Psyllid ID: psy11928

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ
Secondary Structure (PSIPRED)
cccccccccccEEEEEccccEEEEEcccccccccccccHHHHHHHHccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHcccccEEEEEccHHHHHHHccEEEEEEccEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEccccccccEEEEcccEEEEEEccccHHHccccHHHHHcccccHHHHHHHHHHHHHHccccHHHHcccHHHccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHcHHHHHHHHccc
Coil and Loop (DISEMBL)
myahcdlqpqqgelkknhrlrigrfdqhsgehltaeetpAEYLQRLFNLPYEKARKQLGtfglaghahtikmkdlsgGQKARVALAELtlnapdviildeptnnldieSIDALADAINEYKGGviivshderlirdteCTLWVIENQTIEEIDGDFDDYRKELLEALGevvnnpsiVANMAVEQ
Flexible Loop (DISEMBL)
myahcdlqpqqgelkknhrLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIenqtieeidgdFDDYRKELLEalgevvnnpsivanmaveq
Low Complexity Region (SEG)
MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ
Disordered region (IsUnstruct)
***************************************AEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIV*******
Disordered Region (DISOPRED)
MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK****SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKE**********************
Disordered Region (DISEMBL)
MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ
Disordered Region (DISPRO)
MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNP**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q6MG08	839	ATP-binding cassette sub-	yes	N/A	0.885	0.194	0.695	5e-63
Q767L0	807	ATP-binding cassette sub-	yes	N/A	0.875	0.199	0.689	6e-63
Q7YR37	807	ATP-binding cassette sub-	yes	N/A	0.869	0.198	0.687	2e-62
Q8NE71	845	ATP-binding cassette sub-	yes	N/A	0.869	0.189	0.687	2e-62
Q6P542	837	ATP-binding cassette sub-	yes	N/A	0.885	0.194	0.689	2e-62
Q9M1H3	723	ABC transporter F family	yes	N/A	0.853	0.217	0.449	7e-38
Q8K268	709	ATP-binding cassette sub-	no	N/A	0.869	0.225	0.472	2e-35
Q66H39	709	ATP-binding cassette sub-	no	N/A	0.869	0.225	0.453	1e-33
Q9NUQ8	709	ATP-binding cassette sub-	no	N/A	0.869	0.225	0.459	1e-33
Q5R9Z5	709	ATP-binding cassette sub-	yes	N/A	0.869	0.225	0.459	2e-33

>sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1

 Score =  239 bits (611), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/164 (69%), Positives = 132/164 (80%), Gaps = 1/164 (0%)

Query: 12  GELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK 71
           GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  HAHTI+
Sbjct: 674 GEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQ 733

Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131
           +  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+VSHD 
Sbjct: 734 ICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDA 793

Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
           RLI +T C LWV+E Q++ +IDGDFDDY++E+LEALGEV VN P
Sbjct: 794 RLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVNRP 837

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.
Rattus norvegicus (taxid: 10116)

>sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=2 SV=1

 Score =  239 bits (611), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 111/161 (68%), Positives = 131/161 (81%)

Query: 11  QGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI 70
           +GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  HAHTI
Sbjct: 641 RGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTI 700

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
           ++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+VSHD
Sbjct: 701 QICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHD 760

Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVV 171
            RLI +T C LWV+E Q++ +IDGDFDDY++E+LEALGEV+
Sbjct: 761 ARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVM 801

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.

Sus scrofa (taxid: 9823)

>sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1

 Score =  238 bits (606), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 130/160 (81%)

Query: 12  GELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK 71
           GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  HAHTI+
Sbjct: 642 GEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQ 701

Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131
           +  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+VSHD 
Sbjct: 702 ICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDA 761

Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVV 171
           RLI +T C LWV+E Q++ +IDGDF+DY++E+LEALGEV+
Sbjct: 762 RLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVM 801

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.

Pan troglodytes (taxid: 9598)

>sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2

 Score =  238 bits (606), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 130/160 (81%)

Query: 12  GELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK 71
           GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  HAHTI+
Sbjct: 680 GEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQ 739

Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131
           +  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+VSHD 
Sbjct: 740 ICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDA 799

Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVV 171
           RLI +T C LWV+E Q++ +IDGDF+DY++E+LEALGEV+
Sbjct: 800 RLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVM 839

Isoform 2 is required for efficient Cap- and IRES-mediated mRNA translation initiation. Isoform 2 is not involved in the ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1 PE=1 SV=1

 Score =  238 bits (606), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/164 (68%), Positives = 131/164 (79%), Gaps = 1/164 (0%)

Query: 12  GELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK 71
           GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  HAHTI+
Sbjct: 672 GEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSFNLPYQDARKCLGRFGLESHAHTIQ 731

Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131
           +  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AIN+YKG VI+VSHD 
Sbjct: 732 ICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINDYKGAVIVVSHDA 791

Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
           RLI +T C LWV+E Q + +IDGDFDDY++E+LEALGEV VN P
Sbjct: 792 RLITETNCQLWVVEEQGVSQIDGDFDDYKREVLEALGEVMVNRP 835

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.

Mus musculus (taxid: 10090)

>sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1

 Score =  156 bits (395), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 12/169 (7%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL------FNLPYEKARKQLG 59
           DL P +GE++++ +LRIGR+ QH  + LT  ETP +YL RL      F+   E  R +LG
Sbjct: 546 DLVPTEGEMRRSQKLRIGRYSQHFVDLLTMGETPVQYLLRLHPDQEGFS-KQEAVRAKLG 604

Query: 60  TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119
            FGL  H H   +  LSGGQKARV    ++++ P +++LDEPTN+LD++SIDALADA++E
Sbjct: 605 KFGLPSHNHLSPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664

Query: 120 YKGGVIIVSHDERLIR-----DTECTLWVIENQTIEEIDGDFDDYRKEL 163
           + GGV++VSHD RLI      + +  +WV+E+ T+    G F++Y+++L
Sbjct: 665 FTGGVVLVSHDSRLISRVCAEEEKSQIWVVEDGTVNFFPGTFEEYKEDL 713

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K268|ABCF3_MOUSE ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=1 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 102/161 (63%), Gaps = 1/161 (0%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLA 64
           DL P +G    +  L+IG F QH  E L    +  E L R F  LP E+ R QLG +G++
Sbjct: 541 DLSPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGLPEEEYRHQLGRYGIS 600

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
           G      +  LSGGQK+RVA A++T+  P+  ILDEPTN+LD+E+I+AL  A+N ++GGV
Sbjct: 601 GELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGQALNNFRGGV 660

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
           I+VSHDER IR     LWV EN ++  ++G FD YR  L E
Sbjct: 661 ILVSHDERFIRLVCKELWVCENGSVTRVEGGFDQYRALLQE 701

Mus musculus (taxid: 10090)

>sp|Q66H39|ABCF3_RAT ATP-binding cassette sub-family F member 3 OS=Rattus norvegicus GN=Abcf3 PE=2 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 100/161 (62%), Gaps = 1/161 (0%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLA 64
           DL P +G    +  L+IG F QH  E L    +  E L R F   P E+ R QLG +G++
Sbjct: 541 DLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGIS 600

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
           G      +  LSGGQK+RVA A++T+  P+  ILDEPTN+LD+E+I+AL  A+N ++GGV
Sbjct: 601 GELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGHALNNFRGGV 660

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
           ++VSHDER IR     LWV E  ++  ++G FD YR  L E
Sbjct: 661 VLVSHDERFIRLVCKELWVCEKGSVTRVEGGFDQYRALLQE 701

Rattus norvegicus (taxid: 10116)

>sp|Q9NUQ8|ABCF3_HUMAN ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 99/161 (61%), Gaps = 1/161 (0%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLA 64
           DL P +G    +  L+IG F QH  E L    +  E L R F   P E+ R QLG +G++
Sbjct: 541 DLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGIS 600

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
           G      +  LSGGQK+RVA A++T+  P+  ILDEPTN+LD+E+I+AL  A+N ++GGV
Sbjct: 601 GELAMRPLASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNFRGGV 660

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
           I+VSHDER IR     LWV E   +  ++G FD YR  L E
Sbjct: 661 ILVSHDERFIRLVCRELWVCEGGGVTRVEGGFDQYRALLQE 701

Homo sapiens (taxid: 9606)

>sp|Q5R9Z5|ABCF3_PONAB ATP-binding cassette sub-family F member 3 OS=Pongo abelii GN=ABCF3 PE=2 SV=1

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 99/161 (61%), Gaps = 1/161 (0%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLA 64
           DL P +G    +  L+IG F QH  E L    +  E L R F   P E+ R QLG +G++
Sbjct: 541 DLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGIS 600

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
           G      +  LSGGQK+RVA A++T+  P+  ILDEPTN+LD+E+I+AL  A+N ++GGV
Sbjct: 601 GELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNFRGGV 660

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
           I+VSHDER IR     LWV E   +  ++G FD YR  L E
Sbjct: 661 ILVSHDERFIRLVCRELWVCEGGGVTRVEGGFDQYRALLQE 701

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
193676397	1024	PREDICTED: ATP-binding cassette sub-fami	0.967	0.173	0.877	5e-90
322795259	647	hypothetical protein SINV_01158 [Solenop	0.961	0.273	0.882	1e-88
383848444	632	PREDICTED: ATP-binding cassette sub-fami	0.961	0.280	0.877	1e-88
350416015	632	PREDICTED: ATP-binding cassette sub-fami	0.967	0.281	0.872	3e-88
340711562	632	PREDICTED: LOW QUALITY PROTEIN: ATP-bind	0.967	0.281	0.872	3e-88
158300342	910	AGAP012249-PA [Anopheles gambiae str. PE	0.972	0.196	0.882	4e-88
380029930	632	PREDICTED: ATP-binding cassette sub-fami	0.961	0.280	0.882	1e-87
66513776	632	PREDICTED: ATP-binding cassette sub-fami	0.961	0.280	0.882	1e-87
307215518	635	ATP-binding cassette sub-family F member	0.961	0.278	0.871	2e-87
332022454	657	ATP-binding cassette sub-family F member	0.961	0.269	0.871	3e-87

>gi|193676397|ref|XP_001947037.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Acyrthosiphon pisum]

 Score =  335 bits (859), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 171/179 (95%)

Query: 6    DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG 65
            DLQP  GE++KNHR+++G+FDQHSGEHLTAEETPAEYL RLF+LPYEKARKQLGTFGLAG
Sbjct: 846  DLQPTIGEMRKNHRMKLGKFDQHSGEHLTAEETPAEYLMRLFDLPYEKARKQLGTFGLAG 905

Query: 66   HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI 125
            HAHTI+MKDLSGGQKARVALAEL LNAPDVIILDEPTNNLDIESIDALA+AIN+YKGGVI
Sbjct: 906  HAHTIRMKDLSGGQKARVALAELCLNAPDVIILDEPTNNLDIESIDALAEAINDYKGGVI 965

Query: 126  IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
            IVSHDERLIRDTECTLWVIE+QTI E+DGDFDDYRKELLE LGEV+N+PSI AN AVEQ
Sbjct: 966  IVSHDERLIRDTECTLWVIEDQTINEVDGDFDDYRKELLECLGEVINSPSIAANAAVEQ 1024

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795259|gb|EFZ18064.1| hypothetical protein SINV_01158 [Solenopsis invicta]

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 158/179 (88%), Positives = 167/179 (93%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG 65
           D+ PQ+GE+ KNHRLRIGRFDQHSGEHLTAEETPAEYL RLF+LPYEKARKQLGTFGL+ 
Sbjct: 469 DITPQKGEITKNHRLRIGRFDQHSGEHLTAEETPAEYLMRLFDLPYEKARKQLGTFGLSS 528

Query: 66  HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI 125
           HAHTIKMKDLSGGQKARVALAEL LNAPDV+ILDEPTNNLDIESIDALADAINEYKGGVI
Sbjct: 529 HAHTIKMKDLSGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALADAINEYKGGVI 588

Query: 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
           IVSHDERLIRDTEC L+VIENQ I  IDGDFDDYRKELLE+LGEV+NNPSI AN AV Q
Sbjct: 589 IVSHDERLIRDTECCLYVIENQQINAIDGDFDDYRKELLESLGEVINNPSIAANAAVLQ 647

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848444|ref|XP_003699860.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Megachile rotundata]

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 168/179 (93%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG 65
           DLQP +GE+ KNHRLRIG+FDQHSGEHLTAEETP+EYL RLFNLPYEKARKQLGTFGL+ 
Sbjct: 454 DLQPNRGEVSKNHRLRIGKFDQHSGEHLTAEETPSEYLMRLFNLPYEKARKQLGTFGLSS 513

Query: 66  HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI 125
           HAHTIKMKDLSGGQKARVALAEL LNAPDV+ILDEPTNNLDIESIDALADAIN+YKGGVI
Sbjct: 514 HAHTIKMKDLSGGQKARVALAELCLNAPDVVILDEPTNNLDIESIDALADAINDYKGGVI 573

Query: 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
           IVSHDERLIR+TEC L+VIENQ I EIDGDFDDYRKELLE+LGEV+NNPSI AN AV Q
Sbjct: 574 IVSHDERLIRETECCLYVIENQQINEIDGDFDDYRKELLESLGEVINNPSIAANAAVLQ 632

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416015|ref|XP_003490817.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Bombus impatiens]

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/180 (87%), Positives = 168/180 (93%)

Query: 5   CDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLA 64
            DLQP +GEL +NHRLRIG+FDQHSGEHLTAEETP+EYL RLF+LPYEKARKQLGTFGL+
Sbjct: 453 ADLQPVKGELIRNHRLRIGKFDQHSGEHLTAEETPSEYLMRLFDLPYEKARKQLGTFGLS 512

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
            HAHTIKMKDLSGGQKARVALAEL LNAPDV+ILDEPTNNLDIESIDALADAIN+YKGGV
Sbjct: 513 SHAHTIKMKDLSGGQKARVALAELCLNAPDVVILDEPTNNLDIESIDALADAINDYKGGV 572

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
           IIVSHDERLIRDTEC L+VIENQ I EIDGDFDDYRKELLE+LGEV+NNPSI AN AV Q
Sbjct: 573 IIVSHDERLIRDTECCLYVIENQQINEIDGDFDDYRKELLESLGEVINNPSIAANAAVLQ 632

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711562|ref|XP_003394344.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family F member 1-like [Bombus terrestris]

 Score =  329 bits (843), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/180 (87%), Positives = 168/180 (93%)

Query: 5   CDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLA 64
            DLQP +GEL +NHRLRIG+FDQHSGEHLTAEETP+EYL RLF+LPYEKARKQLGTFGL+
Sbjct: 453 ADLQPVKGELIRNHRLRIGKFDQHSGEHLTAEETPSEYLMRLFDLPYEKARKQLGTFGLS 512

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
            HAHTIKMKDLSGGQKARVALAEL LNAPDV+ILDEPTNNLDIESIDALADAIN+YKGGV
Sbjct: 513 SHAHTIKMKDLSGGQKARVALAELCLNAPDVVILDEPTNNLDIESIDALADAINDYKGGV 572

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
           IIVSHDERLIRDTEC L+VIENQ I EIDGDFDDYRKELLE+LGEV+NNPSI AN AV Q
Sbjct: 573 IIVSHDERLIRDTECCLYVIENQQINEIDGDFDDYRKELLESLGEVINNPSIAANAAVLQ 632

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300342|ref|XP_320293.4| AGAP012249-PA [Anopheles gambiae str. PEST] gi|157013113|gb|EAA00265.4| AGAP012249-PA [Anopheles gambiae str. PEST]

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 158/179 (88%), Positives = 170/179 (94%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG 65
           +L P QGE K+NHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLA 
Sbjct: 732 ELDPVQGEAKRNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAS 791

Query: 66  HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI 125
           HAHTIKMKDLSGGQKARVALAEL LNAPDV+ILDEPTNNLDIESIDALA+AINEYKGGVI
Sbjct: 792 HAHTIKMKDLSGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALAEAINEYKGGVI 851

Query: 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
           IVSHDERLIR+TECTL+VIE+QTI E+DGDFDDYRKE+L++LGEV+NNPSI AN AV Q
Sbjct: 852 IVSHDERLIRETECTLFVIEDQTINEVDGDFDDYRKEVLDSLGEVINNPSISANAAVLQ 910

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029930|ref|XP_003698616.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Apis florea]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/179 (88%), Positives = 166/179 (92%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG 65
           DLQP +GE  KNHRLRIG+FDQHSGEHLTAEE+P EYL RLF+LPYEKARKQLGTFGL+ 
Sbjct: 454 DLQPIKGESIKNHRLRIGKFDQHSGEHLTAEESPVEYLMRLFDLPYEKARKQLGTFGLSS 513

Query: 66  HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI 125
           HAHTIKMKDLSGGQKARVALAEL LNAPDV+ILDEPTNNLDIESIDALADAINEYKGGVI
Sbjct: 514 HAHTIKMKDLSGGQKARVALAELCLNAPDVVILDEPTNNLDIESIDALADAINEYKGGVI 573

Query: 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
           IVSHDERLIRDTEC L+VIENQ I EIDGDFDDYRKELLE+LGEVVNNPSI AN AV Q
Sbjct: 574 IVSHDERLIRDTECCLYVIENQQINEIDGDFDDYRKELLESLGEVVNNPSIAANAAVLQ 632

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66513776|ref|XP_623255.1| PREDICTED: ATP-binding cassette sub-family F member 1-like isoform 1 [Apis mellifera]

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/179 (88%), Positives = 166/179 (92%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG 65
           DLQP +GE  KNHRLRIG+FDQHSGEHLTAEE+P EYL RLF+LPYEKARKQLGTFGL+ 
Sbjct: 454 DLQPIKGESIKNHRLRIGKFDQHSGEHLTAEESPVEYLMRLFDLPYEKARKQLGTFGLSS 513

Query: 66  HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI 125
           HAHTIKMKDLSGGQKARVALAEL LNAPDV+ILDEPTNNLDIESIDALADAINEYKGGVI
Sbjct: 514 HAHTIKMKDLSGGQKARVALAELCLNAPDVVILDEPTNNLDIESIDALADAINEYKGGVI 573

Query: 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
           IVSHDERLIRDTEC L+VIENQ I EIDGDFDDYRKELLE+LGEVVNNPSI AN AV Q
Sbjct: 574 IVSHDERLIRDTECCLYVIENQQINEIDGDFDDYRKELLESLGEVVNNPSIAANAAVLQ 632

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215518|gb|EFN90170.1| ATP-binding cassette sub-family F member 1 [Harpegnathos saltator]

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 165/179 (92%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG 65
           DL  Q+GE+ KNHRLRIGRFDQHSGEHLTAEETP EYL RLF+LPYEKARKQLGTFGL+ 
Sbjct: 457 DLTSQKGEVTKNHRLRIGRFDQHSGEHLTAEETPTEYLMRLFDLPYEKARKQLGTFGLSS 516

Query: 66  HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI 125
           HAHTIKMKDLSGGQKARVALAEL LNAPDV+ILDEPTNNLDIESIDALADAIN+YKGGVI
Sbjct: 517 HAHTIKMKDLSGGQKARVALAELCLNAPDVVILDEPTNNLDIESIDALADAINDYKGGVI 576

Query: 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
           IVSHDERLIRDTEC L+VIENQ I  IDGDFDDYRKELLE+LGEV+NNPSI AN AV Q
Sbjct: 577 IVSHDERLIRDTECCLYVIENQQINAIDGDFDDYRKELLESLGEVINNPSIAANAAVLQ 635

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022454|gb|EGI62762.1| ATP-binding cassette sub-family F member 1 [Acromyrmex echinatior]

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 166/179 (92%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG 65
           D+  Q+GE+ KNHRLRIGRFDQHSGEHLTAEETPAEYL RLF+LPYEKARKQLGTFGL+ 
Sbjct: 479 DITSQKGEITKNHRLRIGRFDQHSGEHLTAEETPAEYLMRLFDLPYEKARKQLGTFGLSS 538

Query: 66  HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI 125
           HAHTIKMKDLSGGQKARVALAEL LNAPDV+ILDEPTNNLDIESIDALADAIN+YKGGVI
Sbjct: 539 HAHTIKMKDLSGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALADAINDYKGGVI 598

Query: 126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
           IVSHDERLIRDTEC L+VIENQ I  IDGDFDDYRKELLE+LGEV+NNPSI AN AV Q
Sbjct: 599 IVSHDERLIRDTECCLYVIENQQINAIDGDFDDYRKELLESLGEVINNPSIAANAAVLQ 657

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
FB|FBgn0030321	901	CG1703 [Drosophila melanogaste	0.972	0.198	0.821	2.4e-76
RGD|620286	839	Abcf1 "ATP-binding cassette, s	0.913	0.200	0.686	7.3e-59
UNIPROTKB|Q6MG08	839	Abcf1 "ATP-binding cassette su	0.913	0.200	0.686	7.3e-59
UNIPROTKB|F6Y789	841	ABCF1 "Uncharacterized protein	0.913	0.199	0.680	1.2e-58
UNIPROTKB|J9NXH0	787	ABCF1 "Uncharacterized protein	0.913	0.213	0.680	1.2e-58
UNIPROTKB|E2R3F9	842	ABCF1 "Uncharacterized protein	0.913	0.199	0.680	1.2e-58
UNIPROTKB|K7GL02	842	ABCF1 "ATP-binding cassette, s	0.913	0.199	0.680	1.5e-58
UNIPROTKB|Q767L0	807	ABCF1 "ATP-binding cassette su	0.913	0.208	0.680	1.5e-58
MGI|MGI:1351658	837	Abcf1 "ATP-binding cassette, s	0.913	0.200	0.680	1.9e-58
UNIPROTKB|E1BGH0	845	ABCF1 "Uncharacterized protein	0.913	0.198	0.674	4.2e-58

FB|FBgn0030321 CG1703 [Drosophila melanogaster (taxid:7227)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 147/179 (82%), Positives = 167/179 (93%)

Query:     6 DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG 65
             +L+PQ+GE +KNHRL +GRFDQHSGEHLTAEE+ AEYLQRLFNLP+EKARK LG+FGL  
Sbjct:   723 ELEPQEGEQRKNHRLHVGRFDQHSGEHLTAEESAAEYLQRLFNLPHEKARKALGSFGLVS 782

Query:    66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI 125
             HAHTIKMKDLSGGQKARVALAEL L+APDV+ILDEPTNNLDIESIDALA+AINEY+GGVI
Sbjct:   783 HAHTIKMKDLSGGQKARVALAELCLSAPDVLILDEPTNNLDIESIDALAEAINEYEGGVI 842

Query:   126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
             IVSHDERLIR+T CTL+VIE+QTI EI G+FDDYRKE+L++LGEVVNNPS+VAN AV Q
Sbjct:   843 IVSHDERLIRETGCTLYVIEDQTINEIVGEFDDYRKEVLDSLGEVVNNPSVVANAAVLQ 901

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

RGD|620286 Abcf1 "ATP-binding cassette, subfamily F (GCN20), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 116/169 (68%), Positives = 134/169 (79%)

Query:     7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66
             L P  GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  H
Sbjct:   669 LTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGRFGLESH 728

Query:    67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
             AHTI++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+
Sbjct:   729 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIV 788

Query:   127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
             VSHD RLI +T C LWV+E Q++ +IDGDFDDY++E+LEALGEV VN P
Sbjct:   789 VSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVNRP 837

GO:0005524 "ATP binding" evidence=IEA;ISO;ISS

GO:0005635 "nuclear envelope" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=IDA

GO:0006412 "translation" evidence=NAS

GO:0006413 "translational initiation" evidence=IEA;ISO;ISS

GO:0008494 "translation activator activity" evidence=IEA;ISO;ISS

GO:0016887 "ATPase activity" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISO;ISS

GO:0042788 "polysomal ribosome" evidence=IEA;ISO;ISS

GO:0043022 "ribosome binding" evidence=IEA;ISO;ISS

GO:0045727 "positive regulation of translation" evidence=ISO;ISS

UNIPROTKB|Q6MG08 Abcf1 "ATP-binding cassette sub-family F member 1" [Rattus norvegicus (taxid:10116)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 116/169 (68%), Positives = 134/169 (79%)

Query:     7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66
             L P  GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  H
Sbjct:   669 LTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGRFGLESH 728

Query:    67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
             AHTI++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+
Sbjct:   729 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIV 788

Query:   127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
             VSHD RLI +T C LWV+E Q++ +IDGDFDDY++E+LEALGEV VN P
Sbjct:   789 VSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVNRP 837

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F6Y789 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 115/169 (68%), Positives = 135/169 (79%)

Query:     7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66
             L P +GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  H
Sbjct:   671 LTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESH 730

Query:    67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
             AHTI++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+
Sbjct:   731 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIV 790

Query:   127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
             VSHD RLI +T C LWV+E Q++ +IDGDF+DY++E+LEALGEV VN P
Sbjct:   791 VSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVNRP 839

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|J9NXH0 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 115/169 (68%), Positives = 135/169 (79%)

Query:     7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66
             L P +GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  H
Sbjct:   617 LTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESH 676

Query:    67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
             AHTI++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+
Sbjct:   677 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIV 736

Query:   127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
             VSHD RLI +T C LWV+E Q++ +IDGDF+DY++E+LEALGEV VN P
Sbjct:   737 VSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVNRP 785

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|E2R3F9 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 115/169 (68%), Positives = 135/169 (79%)

Query:     7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66
             L P +GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  H
Sbjct:   672 LTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESH 731

Query:    67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
             AHTI++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+
Sbjct:   732 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIV 791

Query:   127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
             VSHD RLI +T C LWV+E Q++ +IDGDF+DY++E+LEALGEV VN P
Sbjct:   792 VSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVNRP 840

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|K7GL02 ABCF1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Sus scrofa (taxid:9823)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 115/169 (68%), Positives = 135/169 (79%)

Query:     7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66
             L P +GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  H
Sbjct:   672 LTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESH 731

Query:    67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
             AHTI++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+
Sbjct:   732 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIV 791

Query:   127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
             VSHD RLI +T C LWV+E Q++ +IDGDFDDY++E+LEALGEV V+ P
Sbjct:   792 VSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVSRP 840

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|Q767L0 ABCF1 "ATP-binding cassette sub-family F member 1" [Sus scrofa (taxid:9823)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 115/169 (68%), Positives = 135/169 (79%)

Query:     7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66
             L P +GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  H
Sbjct:   637 LTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESH 696

Query:    67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
             AHTI++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+
Sbjct:   697 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIV 756

Query:   127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
             VSHD RLI +T C LWV+E Q++ +IDGDFDDY++E+LEALGEV V+ P
Sbjct:   757 VSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVSRP 805

GO:0005737 "cytoplasm" evidence=ISS

GO:0042788 "polysomal ribosome" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005635 "nuclear envelope" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0008494 "translation activator activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0045727 "positive regulation of translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0016887 "ATPase activity" evidence=IEA

MGI|MGI:1351658 Abcf1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Mus musculus (taxid:10090)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 115/169 (68%), Positives = 133/169 (78%)

Query:     7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66
             L P  GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  H
Sbjct:   667 LTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSFNLPYQDARKCLGRFGLESH 726

Query:    67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
             AHTI++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AIN+YKG VI+
Sbjct:   727 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINDYKGAVIV 786

Query:   127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
             VSHD RLI +T C LWV+E Q + +IDGDFDDY++E+LEALGEV VN P
Sbjct:   787 VSHDARLITETNCQLWVVEEQGVSQIDGDFDDYKREVLEALGEVMVNRP 835

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005635 "nuclear envelope" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=ISO

GO:0006413 "translational initiation" evidence=ISO

GO:0008494 "translation activator activity" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042788 "polysomal ribosome" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

GO:0045727 "positive regulation of translation" evidence=ISO

UNIPROTKB|E1BGH0 ABCF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 597 (215.2 bits), Expect = 4.2e-58, P = 4.2e-58
 Identities = 114/169 (67%), Positives = 135/169 (79%)

Query:     7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH 66
             L P +GE++KNHRL+IG F+Q   E L  EETP EYLQR FNLPY+ ARK LG FGL  H
Sbjct:   675 LTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESH 734

Query:    67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII 126
             AHTI++  LSGGQKARV  AEL    PDV+ILDEPTNNLDIESIDAL +AINEYKG VI+
Sbjct:   735 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIV 794

Query:   127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEV-VNNP 174
             VSHD RLI +T C LWV+E Q++ +IDGDF+DY++E+LEALGEV V+ P
Sbjct:   795 VSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVSRP 843

GO:0043022 "ribosome binding" evidence=IEA

GO:0042788 "polysomal ribosome" evidence=IEA

GO:0008494 "translation activator activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q767L0	ABCF1_PIG	No assigned EC number	0.6894	0.875	0.1995	yes	N/A
Q7YR37	ABCF1_PANTR	No assigned EC number	0.6875	0.8695	0.1982	yes	N/A
Q6P542	ABCF1_MOUSE	No assigned EC number	0.6890	0.8858	0.1947	yes	N/A
Q6MG08	ABCF1_RAT	No assigned EC number	0.6951	0.8858	0.1942	yes	N/A
Q8NE71	ABCF1_HUMAN	No assigned EC number	0.6875	0.8695	0.1893	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	184
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-46
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	5e-36
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	8e-33
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-31
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-27
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	1e-19
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-19
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-18
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-18
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	5e-17
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	5e-17
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	8e-17
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	8e-17
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	9e-17
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	9e-17
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-16
pfam00005	119	pfam00005, ABC_tran, ABC transporter	3e-16
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	5e-16
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	2e-15
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	3e-15
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	3e-15
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-14
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-14
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	3e-14
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	4e-14
COG4133	209	COG4133, CcmA, ABC-type transport system involved	4e-14
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	4e-14
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	5e-14
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	5e-14
COG4988	559	COG4988, CydD, ABC-type transport system involved	6e-14
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	1e-13
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-13
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-13
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-13
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-12
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-12
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-12
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-12
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-12
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	3e-12
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	4e-12
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	5e-12
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	6e-12
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	9e-12
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-11
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	1e-11
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-11
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	3e-11
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	3e-11
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	5e-11
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	6e-11
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	6e-11
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	6e-11
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	7e-11
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	7e-11
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	7e-11
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	8e-11
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	8e-11
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	1e-10
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	1e-10
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	1e-10
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	1e-10
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	1e-10
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-10
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-10
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	2e-10
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-10
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-10
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-10
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	3e-10
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-10
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	4e-10
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	4e-10
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	5e-10
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	6e-10
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	6e-10
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	8e-10
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	8e-10
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	1e-09
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-09
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	1e-09
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-09
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-09
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	2e-09
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-09
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-09
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	3e-09
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	3e-09
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	3e-09
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	4e-09
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	5e-09
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	6e-09
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	6e-09
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	6e-09
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	7e-09
COG4987	573	COG4987, CydC, ABC-type transport system involved	7e-09
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	8e-09
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	9e-09
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	9e-09
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	9e-09
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	1e-08
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-08
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-08
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	2e-08
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	2e-08
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-08
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-08
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	3e-08
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	3e-08
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	3e-08
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	3e-08
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	4e-08
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	4e-08
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	5e-08
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	5e-08
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	5e-08
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	6e-08
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	6e-08
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	6e-08
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	8e-08
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	8e-08
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	9e-08
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	1e-07
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	1e-07
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-07
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	1e-07
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	1e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-07
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-07
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	2e-07
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	2e-07
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-07
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	4e-07
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	4e-07
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	4e-07
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	4e-07
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	4e-07
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	4e-07
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-07
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	5e-07
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	6e-07
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	6e-07
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	6e-07
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	7e-07
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	7e-07
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	7e-07
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	7e-07
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	8e-07
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	8e-07
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	8e-07
COG5265	497	COG5265, ATM1, ABC-type transport system involved	9e-07
COG4598	256	COG4598, HisP, ABC-type histidine transport system	9e-07
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	1e-06
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	1e-06
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-06
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-06
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-06
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	2e-06
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	2e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-06
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	2e-06
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-06
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-06
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-06
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-06
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	3e-06
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	3e-06
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	3e-06
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	3e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-06
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	4e-06
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	4e-06
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	4e-06
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	5e-06
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	6e-06
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	6e-06
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	6e-06
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	6e-06
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	7e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	8e-06
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	8e-06
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	8e-06
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	9e-06
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	9e-06
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	9e-06
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	1e-05
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	1e-05
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-05
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-05
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	1e-05
pfam13304	256	pfam13304, AAA_21, AAA domain	1e-05
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	1e-05
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-05
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	1e-05
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-05
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	1e-05
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	1e-05
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-05
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-05
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	1e-05
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-05
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-05
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	2e-05
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	2e-05
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	2e-05
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-05
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-05
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-05
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	2e-05
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	2e-05
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	2e-05
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	2e-05
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	2e-05
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-05
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	3e-05
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	3e-05
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	3e-05
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	3e-05
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	3e-05
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	3e-05
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	3e-05
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	3e-05
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	3e-05
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	3e-05
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	3e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-05
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	4e-05
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	4e-05
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	4e-05
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	5e-05
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	5e-05
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	6e-05
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	6e-05
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	6e-05
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	6e-05
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	6e-05
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	6e-05
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	6e-05
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	7e-05
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	7e-05
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	7e-05
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	7e-05
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	7e-05
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	7e-05
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	8e-05
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	8e-05
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	9e-05
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	1e-04
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	1e-04
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-04
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	1e-04
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-04
TIGR00606	1311	TIGR00606, rad50, rad50	1e-04
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-04
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	1e-04
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	2e-04
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	2e-04
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	2e-04
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	2e-04
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	2e-04
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-04
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	2e-04
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	2e-04
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	3e-04
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	3e-04
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	3e-04
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	3e-04
cd03270	226	cd03270, ABC_UvrA_I, ATP-binding cassette domain I	3e-04
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	3e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	3e-04
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	3e-04
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	3e-04
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	4e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	4e-04
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	4e-04
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	4e-04
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	4e-04
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	4e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	5e-04
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	5e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	5e-04
pfam13558	79	pfam13558, SbcCD_C, Putative exonuclease SbcCD, C	5e-04
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	5e-04
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	6e-04
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	6e-04
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	6e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	6e-04
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	6e-04
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	7e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	8e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	8e-04
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	0.001
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	0.001
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	0.001
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	0.001
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	0.001
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
cd03279	213	cd03279, ABC_sbcCD, ATP-binding cassette domain of	0.001
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	0.002
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.002
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	0.002
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	0.002
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	0.002
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	0.002
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	0.002
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	0.002
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	0.002
cd03272	243	cd03272, ABC_SMC3_euk, ATP-binding cassette domain	0.002
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	0.002
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	0.002
COG4637	373	COG4637, COG4637, Predicted ATPase [General functi	0.002
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	0.002
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	0.003
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	0.003
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	0.003
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	0.003
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	0.003
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	0.003
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	0.003
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	0.004
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	0.004
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	0.004
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	0.004

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score =  158 bits (401), Expect = 3e-46
 Identities = 61/161 (37%), Positives = 100/161 (62%), Gaps = 3/161 (1%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLA 64
           +L P  G +K    ++IG FDQH  + L  ++T  E L   F +   ++ R  LG FG  
Sbjct: 371 ELGPLSGTVKVGETVKIGYFDQHR-DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
           G      +  LSGG+KAR+ LA+L L  P++++LDEPTN+LDIES++AL +A+ +++G V
Sbjct: 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTV 489

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
           ++VSHD   +      +W++E+  +EE +G ++DY ++  E
Sbjct: 490 LLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQKKE 529

Length = 530

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score =  131 bits (332), Expect = 5e-36
 Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 1/159 (0%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLA 64
           +LQP  G + ++ ++R+  F QH  + L     P  Y+ R F  +P +K R  LG+FG+ 
Sbjct: 558 ELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 617

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
           G+     M  LSGGQK+RVA A++T   P +++LDEP+N+LD+++++AL   +  ++GGV
Sbjct: 618 GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGV 677

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKEL 163
           ++VSHDE LI  +   LWV+    +    G F DY+K L
Sbjct: 678 LMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTL 716

Length = 718

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score =  122 bits (309), Expect = 8e-33
 Identities = 61/162 (37%), Positives = 100/162 (61%), Gaps = 1/162 (0%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYE-KARKQLGTFGLA 64
           +L P  GE+     +++G F QH  E L A+E+P ++L RL     E K R  LG FG  
Sbjct: 361 ELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQ 420

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV 124
           G   T + +  SGG+KAR+ LA +    P++++LDEPTN+LD++   AL +A+ +++G +
Sbjct: 421 GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGAL 480

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEA 166
           ++VSHD  L+R T   L+++ +  +E  DGD +DY++ L + 
Sbjct: 481 VVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDV 522

Length = 638

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score =  110 bits (277), Expect = 2e-31
 Identities = 36/74 (48%), Positives = 53/74 (71%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
           LSGG+K R+ALA+L L  P++++LDEPTN+LD+ESI+AL +A+ EY G VI+VSHD   +
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130

Query: 135 RDTECTLWVIENQT 148
                 +  +E+  
Sbjct: 131 DQVATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score =  106 bits (268), Expect = 2e-27
 Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 2/98 (2%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
            +  LSGG + RVALA   L  PD+++LDEPTN+LD+ESI+ L D +  Y G VI+VSHD
Sbjct: 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHD 209

Query: 131 ERLIRDTECT-LWVIENQTIEEIDGDFDDYRKELLEAL 167
              + D   T +  ++   +    G++  Y ++  E L
Sbjct: 210 RYFL-DNVATHILELDRGKLTPYKGNYSSYLEQKAERL 246

Length = 530

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 85.0 bits (211), Expect = 1e-19
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 35/173 (20%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGE---HLTAEETPAE----------------YLQRL 46
            LQ   G +    +L +  FDQH  E     T  +  AE                YLQ  
Sbjct: 368 QLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQD- 426

Query: 47  FNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           F    ++A                 +K LSGG++ R+ LA L L   +++ILDEPTN+LD
Sbjct: 427 FLFHPKRAM--------------TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472

Query: 107 IESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIE-NQTIEEIDGDFDD 158
           +E+++ L + ++ Y+G V++VSHD + + +T    W+ E N  I    G + D
Sbjct: 473 VETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525

Length = 635

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 82.4 bits (204), Expect = 3e-19
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 10/107 (9%)

Query: 31  EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALA 86
             LT  E   E+  RL+ L  E+A ++    L  FGL   A+  K++ LSGG K R+++A
Sbjct: 91  PELTVREN-LEFFARLYGLSKEEAEERIEELLELFGLEDKANK-KVRTLSGGMKQRLSIA 148

Query: 87  ELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG----GVIIVSH 129
              L+ P+++ILDEPT+ LD ES   + + + E        +++ +H
Sbjct: 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195

Length = 293

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 9/174 (5%)

Query: 8   QPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYL---QRLFNL-PYE-KARKQLGTFG 62
           QP  G +K    +++   DQ S + L   +T  E +     +  L   E  +R  +G F 
Sbjct: 373 QPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFN 431

Query: 63  LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG 122
             G     K+  LSGG++ RV LA+   +  +V++LDEPTN+LD+E++ AL +A+ E+ G
Sbjct: 432 FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG 491

Query: 123 GVIIVSHDERLIRDTECT--LWVIENQTIEEIDGDFDDYRKELLEALGEVVNNP 174
             +++SHD R   D   T  L    +  +E  +G++ +Y ++    LGE  + P
Sbjct: 492 CAVVISHD-RWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGEDADQP 544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 78.7 bits (195), Expect = 2e-18
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 31  EHLTAEE---TPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
             LT  E    P     +        A + L   GL       K  +LSGGQ+ RVA+A 
Sbjct: 96  PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155

Query: 88  LTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHDERL 133
             +N P +I+ DEPT NLD ++    ++ L +   E    +I+V+HD  L
Sbjct: 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205

Length = 226

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 77.7 bits (192), Expect = 5e-17
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
           LSGG++ RVAL  L L+ PD+++LDEPTN+LD ES+  L   + EY G V+ V+HD
Sbjct: 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHD 217

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 75.2 bits (186), Expect = 5e-17
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 32  HLTAEE---TPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAEL 88
            LTA E    P            E+A + L   GL    +     +LSGGQ+ RVA+A  
Sbjct: 96  DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-YPSELSGGQQQRVAIARA 154

Query: 89  TLNAPDVIILDEPTNNLDIES----IDALADAINEYKG-GVIIVSHDERLIR 135
             N P +I+ DEPT NLD E+    ++ L + +N+  G  +++V+HD  L  
Sbjct: 155 LANDPKIILADEPTGNLDSETGKEVMELLRE-LNKEAGTTIVVVTHDPELAE 205

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 74.2 bits (183), Expect = 8e-17
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 27  QHSGEHLTAEETPAEYLQRLFNLP--YEKARKQLGTFGLAG----HAHTIKMKDLSGGQK 80
           Q     L  +    E L  L  L    E+A   L    L      H        LSGGQK
Sbjct: 78  QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL-----SLSGGQK 132

Query: 81  ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDERLI 134
            R+A+A   L+  D++I DEPT+ LD ++++ + + I E       VI+++HD   +
Sbjct: 133 QRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL 189

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 73.0 bits (180), Expect = 8e-17
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDE 131
           LSGGQ+ RVALA   L  PD+++LDEPT+ LD  S + L + + E       VIIV+HD 
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140

Query: 132 RLIR 135
            L  
Sbjct: 141 ELAE 144

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 76.9 bits (190), Expect = 9e-17
 Identities = 31/89 (34%), Positives = 56/89 (62%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
            +K LSGG+K R+   +L +  P+V+++DEPTN++D+ESI++L  A+ +Y+G +I VSHD
Sbjct: 435 SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHD 494

Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDY 159
              +      +  I    + +  G +++Y
Sbjct: 495 REFVSSLATRIIEITPDGVVDFSGTYEEY 523

Length = 530

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 74.0 bits (183), Expect = 9e-17
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E+  + L   GL G         LSGGQK RVA+A +    PD+++LDEPT  LD     
Sbjct: 113 ERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171

Query: 112 ALADAINEYKG---GVIIVSHDERLIRD 136
            L + + + K     +IIV+HD  L+ +
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLE 199

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 75.5 bits (187), Expect = 2e-16
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
           LSGG++ RVAL  L L  PD+++LDEPTN+LD ES+  L   +++Y G V+ V+HD
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD 219

Length = 556

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 70.8 bits (174), Expect = 3e-16
 Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 20/113 (17%)

Query: 7   LQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPY--- 51
           LQP  G +  +             R RIG   Q     L  E T  E L   F L     
Sbjct: 11  LQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDP--QLFPELTVRENL--FFGLRDKEA 66

Query: 52  -EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN 103
             +A + L   GL        +  LSGGQK RVA+A   L  P +++LDEPT 
Sbjct: 67  DARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 74.4 bits (184), Expect = 5e-16
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 54  ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL 113
           +R  +G F   G     K+  LSGG++ R+ LA+      +V++LDEPTN+LD+E++ AL
Sbjct: 425 SRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484

Query: 114 ADAINEYKGGVIIVSHDERLIRDTECT---LWVIENQTIEEIDGDFDDYRKELLEALGEV 170
            +A+ E+ G  +++SHD R   D   T    +  ++Q +E  +G+F +Y ++    LG  
Sbjct: 485 EEALLEFPGCAVVISHD-RWFLDRIATHILAFEGDSQ-VEWFEGNFQEYEEDKKRRLGAD 542

Query: 171 VNNP 174
              P
Sbjct: 543 AARP 546

Length = 556

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 32  HLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLN 91
           +LTA E     L RL  +  ++  + L   GL   A   K+K  S G K R+ +A   L 
Sbjct: 86  NLTAREN-LRLLARLLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIALALLG 143

Query: 92  APDVIILDEPTNNLDIESIDALADAI---NEYKGGVIIVSH 129
            PD++ILDEPTN LD + I  L + I    +    V+I SH
Sbjct: 144 NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSH 184

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 58  LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
           L   GL   A    +  LSGG   + AL    ++ PDV++LDEPTN+LDIE+I+ L   +
Sbjct: 143 LAQLGLDPDA---ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL 199

Query: 118 NEYKGGVIIVSHDERLIR 135
             ++G +I +SHD   IR
Sbjct: 200 KTFQGSIIFISHDRSFIR 217

Length = 635

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 68  HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIV 127
           H   M +++ G K RV LA+   + PD+++LDEPTNNLDI +I  L D +NE    +II+
Sbjct: 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIII 208

Query: 128 SHD 130
           SHD
Sbjct: 209 SHD 211

Length = 530

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 67.8 bits (167), Expect = 1e-14
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
            LSGG K R+ALA+  L+ P+++ILDEPT+ LD ES     + + E K     +++ SH 
Sbjct: 95  KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154

Query: 131 ERLI 134
               
Sbjct: 155 LEEA 158

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 23/146 (15%)

Query: 7   LQPQQGEL--------KKNHRLRIGRFDQHSGEH----LTAEET-------PAEYLQRLF 47
           L+P  GE+        K+  RLRIG   Q S       +T ++           + +RL 
Sbjct: 54  LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN 113

Query: 48  NLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
               EK  + L   G+       ++ +LSGGQK RV LA      PD+++LDEP   +D+
Sbjct: 114 KKDKEKVDEALERVGMEDLRDR-QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172

Query: 108 ESIDALADAINEYKG---GVIIVSHD 130
                + D + E +     V++V+HD
Sbjct: 173 AGQKEIYDLLKELRQEGKTVLMVTHD 198

Length = 254

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHD 130
           LSGGQ+ R+A+A   +  P ++ILDEPT+ LD+    + ++ L +   E     + +SHD
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201

Query: 131 ERLIRDTECTLWVIENQTIEEI-------DGDFDDYRKELLEA 166
             L+      + V++N  I EI             Y +ELLEA
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRELLEA 244

Length = 252

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 66.3 bits (163), Expect = 4e-14
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   L  P ++ILDE T+ LD E+   + +A+     G  VI+++H   
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156

Query: 133 LIRD 136
            IRD
Sbjct: 157 TIRD 160

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 18/142 (12%)

Query: 7   LQPQQGELK-KNHRLRIGRFDQHSGEH-----------LTAEETPAEYLQRLFN-LPYEK 53
           L+P  GE+  +   ++  R   H               LTA E    + QR         
Sbjct: 52  LRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALEN-LHFWQRFHGSGNAAT 110

Query: 54  ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL 113
             + L   GLAG    + +  LS GQ+ RVALA L L+   + ILDEP   LD E +  L
Sbjct: 111 IWEALAQVGLAGLED-LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169

Query: 114 ADAINEY--KGGVIIV-SHDER 132
              +  +  +GG++++ +H   
Sbjct: 170 TALMAAHAAQGGIVLLTTHQPL 191

Length = 209

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 67.2 bits (165), Expect = 4e-14
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI 110
             K  + L   GL+  A   ++ +LSGGQ+ RV LA   +  PD+++LDEP   +D ++ 
Sbjct: 110 KAKVDEALERVGLSELADR-QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ 168

Query: 111 DALADAINEYKG---GVIIVSHD 130
           + + + + E +     +++V+HD
Sbjct: 169 EDIYELLRELRREGMTILVVTHD 191

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 67.4 bits (165), Expect = 5e-14
 Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 17/138 (12%)

Query: 7   LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQ------RLFNLPYEKARKQLGT 60
           + P +G +K+N +LRIG   Q      T   T   +L+      +   LP  K R Q   
Sbjct: 54  VAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK-RVQ--- 109

Query: 61  FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN-- 118
              AGH     M+ LSGG+  RV LA   LN P +++LDEPT  +D+    AL D I+  
Sbjct: 110 ---AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166

Query: 119 --EYKGGVIIVSHDERLI 134
             E    V++VSHD  L+
Sbjct: 167 RRELDCAVLMVSHDLHLV 184

Length = 251

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E+  + L   GL          +LSGGQK RVA+A +    P++++LDEPT  LD +   
Sbjct: 117 ERVAEALELVGLEELLDR-PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175

Query: 112 ALADAINEYK----GGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY--RKELLE 165
            L + + + K      +IIV+HD  L+ +    + V+++  I   DGD  +     ELL 
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI-LADGDPAEIFNDAELLL 234

Query: 166 A 166
           A
Sbjct: 235 A 235

Length = 235

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ  R+ALA   L+   +++LDEPT +LD E+   +  A+ E      V++++H   
Sbjct: 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLE 516

Query: 133 LIRDTECTLWVIENQTIEEIDGDFDD 158
              D +  + V++N  + E  G  ++
Sbjct: 517 DAADADR-IVVLDNGRLVEQ-GTHEE 540

Length = 559

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 11/72 (15%)

Query: 75  LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESID-ALADAINEYKGG---- 123
            SGG+K       R+ALAE   +   ++ LDEPT NLD E+I+ +LA+ I E K      
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175

Query: 124 VIIVSHDERLIR 135
           +I+++HDE L+ 
Sbjct: 176 LIVITHDEELVD 187

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 13/136 (9%)

Query: 32  HLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGHAHTIKMKD-LSGGQKARVALA 86
           HLT  E       ++  L      EKA + L   GLA  A        LSGGQ+ RVA+A
Sbjct: 91  HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD--AYPAQLSGGQQQRVAIA 148

Query: 87  E-LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDERLIRDTECTLW 142
             L ++ P V++ DEPT+ LD E +  + D + +       +IIV+H+    R+    + 
Sbjct: 149 RALAMD-PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI 207

Query: 143 VIENQTIEEIDGDFDD 158
            ++   I E +G  ++
Sbjct: 208 FMDQGKIIE-EGPPEE 222

Length = 240

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 18/145 (12%)

Query: 40  AEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMK--DLSGGQKARVALAELTLNAP 93
            E L+        +ARK+    L   GL             LSGG + RV +A      P
Sbjct: 115 REALRLHGKGSRAEARKRAVELLEQVGLP-DPERRDRYPHQLSGGMRQRVMIAMALALKP 173

Query: 94  DVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHDERLIRD-TECTLW-----V 143
            ++I DEPT  LD     + +D L D   E    V+ ++HD  ++ +  +  +      +
Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233

Query: 144 IENQTIEEIDGDF-DDYRKELLEAL 167
           +E    EEI  +    Y + LL A+
Sbjct: 234 VETGPTEEILSNPQHPYTRGLLAAV 258

Length = 539

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+ALA   L+ P +++LDE T+ LD E+   +   + +   G  VII++H   
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669

Query: 133 LIRDTE 138
            IR  +
Sbjct: 670 TIRSAD 675

Length = 709

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 19  RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKM 72
           R RIG   Q  G   + T  E   +Y+  L  +P ++ + +    L    L   A   K+
Sbjct: 71  RRRIGYLPQEFGVYPNFTVREF-LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-KI 128

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE 108
             LSGG + RV +A+  +  P ++I+DEPT  LD E
Sbjct: 129 GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 32  HLTAEE---TPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAEL 88
           +LTA E    P E            A+  L   GL G   T     LSGG++ RVALA  
Sbjct: 102 NLTALENVALPLELRGESSADSRAGAKALLEAVGL-GKRLTHYPAQLSGGEQQRVALARA 160

Query: 89  TLNAPDVIILDEPTNNLDIESIDALAD---AINEYKG-GVIIVSHDERL 133
               PDV+  DEPT NLD  + D +AD   A+N  +G  +++V+HD +L
Sbjct: 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL 209

Length = 228

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ  R+ALA   L    +++LDEPT +LD E+   + +A+     G  V++V+H   
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLA 518

Query: 133 LIRD 136
           L   
Sbjct: 519 LAAL 522

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E+A + L   GL  H    +  +LSGG++ RVA+A   +N P +++ DEPT NLD  +  
Sbjct: 120 ERAYEMLEKVGL-EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178

Query: 112 ALADAINE----YKGGVIIVSHDERLIRDTECTLWVIEN 146
            + D + E         ++V+HD  L +  +  L  +++
Sbjct: 179 IIFDLMLELNRELNTSFLVVTHDLELAKKLDRVL-EMKD 216

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 62.5 bits (153), Expect = 2e-12
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
           LSGGQ+ RVA+A      P ++I DEPT+ LD+      +D L     E    ++ ++HD
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205

Query: 131 ERLIR 135
             ++ 
Sbjct: 206 LGVVA 210

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 5/74 (6%)

Query: 58  LGTFGLAGHAHTIKMKDLSGGQKARVALAELTL-NAPDVIILDEPTNNLDIESIDALADA 116
           L   GLA  AH +    LS GQK RVALA L + N P + ILDEPT  LD  ++   A+ 
Sbjct: 112 LEAVGLAPLAH-LPFGYLSAGQKRRVALARLLVSNRP-IWILDEPTAALDAAAVALFAEL 169

Query: 117 INEY--KGGVIIVS 128
           I  +  +GG++I +
Sbjct: 170 IRAHLAQGGIVIAA 183

Length = 207

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 61.8 bits (151), Expect = 4e-12
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 10/102 (9%)

Query: 38  TPAEYLQ---RLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTL 90
           T  E+L+   RL  LP  + +++    L   GL   A+  + + LSGG K +++LA   +
Sbjct: 91  TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-RARTLSGGMKRKLSLAIALI 149

Query: 91  NAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
             P V++LDEPT+ LD  S  A+ D I E + G  +I+ +H 
Sbjct: 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHS 191

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 61.7 bits (151), Expect = 5e-12
 Identities = 42/137 (30%), Positives = 58/137 (42%), Gaps = 15/137 (10%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLG 59
           D+           R R+G   Q     + LT  E  A  L+    L      E   ++L 
Sbjct: 63  DISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLE 122

Query: 60  TFGLAGHAHTIKM-KDLSGGQKARVALAE-LTLNAPDVIILDEPTNNLDIESIDALADAI 117
             GL G         +LSGG K RVALA  L L+ P++++ DEPT  LD  +   + D I
Sbjct: 123 AVGLRGAED--LYPAELSGGMKKRVALARALALD-PELLLYDEPTAGLDPIASGVIDDLI 179

Query: 118 N----EYKGGVIIVSHD 130
                E     I+V+HD
Sbjct: 180 RSLKKELGLTSIMVTHD 196

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 60.6 bits (148), Expect = 6e-12
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
           LSGG++ R+A A L L+ P  + LDE T+ LD ES D L   + E    VI V H     
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRP--- 148

Query: 135 RDTECTLWVIENQTIEEIDGD 155
                +LW   ++ + ++DG+
Sbjct: 149 -----SLWKFHDRVL-DLDGE 163

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 60.1 bits (147), Expect = 9e-12
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSH 129
           +LSGG++ RV LA      P +++LDEPT++LDI    E ++ L     E    V++V H
Sbjct: 97  ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156

Query: 130 D 130
           D
Sbjct: 157 D 157

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
            LSGGQ+ R+ LA    N P+V++LDEPT+ LD  S   + + I E K    ++IV+H+
Sbjct: 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 8/95 (8%)

Query: 42  YLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVII 97
           YL +L  L  E+AR++    L    L+ +A+  ++++LS G + +V      ++ P+++I
Sbjct: 93  YLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLI 151

Query: 98  LDEPTNNLDIESIDALADAINEYKGG---VIIVSH 129
           LDEP + LD  +++ L D I E       VI+ +H
Sbjct: 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 35/144 (24%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----I 107
           E+A++ L   GLAG         LSGG + RVA+A      P +++LDEP   LD     
Sbjct: 109 ERAKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167

Query: 108 ESIDALADAINEYKGGVIIVSHD--------ERLIRDTECTLWVIENQ--TIEEI----- 152
           E  D L     E +  V++V+HD        +R++        V+ N+   I E      
Sbjct: 168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV--------VLSNRPGRIGEELEIDL 219

Query: 153 -------DGDFDDYRKELLEALGE 169
                  D +F + R+ELLE L E
Sbjct: 220 PRPRIRGDPEFLELREELLEELRE 243

Length = 248

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 58  LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
           L   GL G         LS GQ+ R+ALA L L+   + ILDEPT  LD   +  LA  +
Sbjct: 112 LAAVGLTGFEDLP-AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170

Query: 118 NEY---KGGVIIVSHDER 132
             +    G V++ +H + 
Sbjct: 171 RAHLARGGIVLLTTHQDL 188

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 62  GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD---AIN 118
           GL+     +  + LSGG++ RVA+A   +N+P ++I DEPT NLD ++   + +    IN
Sbjct: 125 GLSHKHRALPAE-LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183

Query: 119 EYKGGVIIVSHDERLIRDTECTLWVIEN 146
           +    V++ +H + L+  T   +  +E 
Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIALER 211

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSH 129
           LSGGQ+ R+ALA      P +++LDEP +NLD E   ALA AI   K   G V++++H
Sbjct: 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530

Length = 580

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 59.7 bits (145), Expect = 6e-11
 Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 32  HLTAEETPAEYLQRLFNLPYEKARK-----QLGTFGLAGHAHTIKMKDLSGGQKARVALA 86
           H+T  +  A  L+     P E   +      L    L G A       LSGGQ+ RVALA
Sbjct: 91  HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-RYPAQLSGGQRQRVALA 149

Query: 87  ELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHDERLIRDTECTLW 142
                 P V++LDEP   LD     E    L    +      + V+HD+    +    + 
Sbjct: 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVV 209

Query: 143 VIENQTIEEIDGDFDDYRKE----LLEALGEVVNNPSIVAN 179
           V+    IE++    + Y       +   LGEV   P  V  
Sbjct: 210 VLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGEVIL 250

Length = 345

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 58.6 bits (143), Expect = 6e-11
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E+A + L   GLA  A      +LS GQ+ R+ +A      P +++LDEP   L+ E  +
Sbjct: 122 ERAEELLERVGLADLADRP-AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180

Query: 112 ALAD---AINEYKGGVIIVSHDERLIRD 136
            LA+    + E    V++V HD  ++  
Sbjct: 181 ELAELIRELRERGITVLLVEHDMDVVMS 208

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 58.3 bits (142), Expect = 6e-11
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDE 131
            SGG+K R  + +L L  PD+ ILDEP + LDI+++  +A+ IN+ +     V+I++H +
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164

Query: 132 RLI 134
           RL+
Sbjct: 165 RLL 167

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
           LSGGQ+  VALA   LN P +++LDEPT+ +D+ S + L + + +  G   +II++H
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITH 197

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 59.5 bits (145), Expect = 7e-11
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 22/102 (21%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-- 130
           LSGGQ+  VALA   L  P +++LDEPT+ +D  S +   D +  +  G  +++V+H   
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661

Query: 131 -----ERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEAL 167
                +R+I        V++N  I   DG     + ++LEAL
Sbjct: 662 LLDLVDRII--------VMDNGRI-VADGP----KDQVLEAL 690

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 62  GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAIN 118
           GL   A     + LSGG++ RVA+A   +N+P +++ DEPT NLD    E I  L   +N
Sbjct: 126 GLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN 184

Query: 119 EYKGGVIIVSHDERLIR 135
           +    VI+ +HD  L+ 
Sbjct: 185 KRGTTVIVATHDLSLVD 201

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 59.4 bits (144), Expect = 8e-11
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   L  P ++ILDE T+ LD E+   + DA+ +   G   +I++H   
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525

Query: 133 LIRDTECTLWVIENQTIEEID 153
            I++ +  + V++N  I E  
Sbjct: 526 TIKNAD-RIIVLDNGRIVERG 545

Length = 567

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 58.7 bits (143), Expect = 8e-11
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI--- 107
            E   + L   GL   A    + +LSGG++ RV +A        +++LDEPT++LDI   
Sbjct: 116 EEIVEEALELLGLEHLADRP-VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174

Query: 108 -ESIDALADAINEYKGGVIIVSHD 130
            E ++ L D   E    V++V HD
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHD 198

Length = 258

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 19  RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQLG-TFGLAGHAHTI--KMK 73
           R R+G     +G  + LTA E   EY   L+ L  ++   +L       G    +  ++ 
Sbjct: 77  RRRLGFVSDSTGLYDRLTAREN-LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVS 128
             S G + +VA+A   ++ P V++LDEPT  LD+ +  AL + I + +  G  I+ S
Sbjct: 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 11/97 (11%)

Query: 43  LQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIIL 98
            + LF L  ++ + Q    L   G+   A+  +   LSGGQ+ RVA+A   +  P +I+ 
Sbjct: 113 WRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILA 171

Query: 99  DEPTNNLDIES----IDALADAINEYKGG-VIIVSHD 130
           DEP  +LD ES    +D L D IN+  G  VI+  H 
Sbjct: 172 DEPVASLDPESAKKVMDILKD-INQEDGITVIVNLHQ 207

Length = 258

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 32  HLTAE---ETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAEL 88
           HLTA    E PA Y          +A++ L   GL       +   LSGGQ+ RV++A  
Sbjct: 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-YQPSQLSGGQQQRVSIARA 158

Query: 89  TLNAPDVIILDEPTNNLDIES---IDALADAINEYKGGVIIVSHD-------ERL--IRD 136
            +N   VI+ DEPT  LD  S   + A+   + +    VIIV+HD       ER+  IRD
Sbjct: 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRD 218

Query: 137 TE 138
            E
Sbjct: 219 GE 220

Length = 648

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVS--HDER 132
           LSGG++ R+A A L L+ P  + LDE T+ LD E+ D L   + E      ++S  H   
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT 575

Query: 133 LIR 135
           L  
Sbjct: 576 LWN 578

Length = 604

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDE 131
           LSGGQ+ R+ LA      P +++LDEP ++LD+E   AL  AI   K      I+++H  
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156

Query: 132 RLIR 135
             + 
Sbjct: 157 ETLA 160

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 3/63 (4%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHDE 131
           LSGGQ+ R+ALA      P +++LDEP +NLD E   ALA+AI   K     V++++H  
Sbjct: 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP 514

Query: 132 RLI 134
            L+
Sbjct: 515 SLL 517

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIE---SIDALADAINEYKG-GVIIVSHD 130
           LSGGQ+ RVALA      PDV++LDEPT+ LD      + AL  ++    G  V++V+HD
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 6/86 (6%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE-YKGG--VIIVSHD 130
           +LSGGQK RVALA +    PD ++ DEPT  LD + +  + +  +   K G  +I+V+HD
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224

Query: 131 -ERLIRDTECTLWVIENQTIEEIDGD 155
            + ++  T+ T++  + + I+  DGD
Sbjct: 225 LDNVLEWTKRTIFFKDGKIIK--DGD 248

Length = 305

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE--- 108
            +  + L   GL   A  +    LSGG++ RVA+A   +N P V++ DEPT NLD +   
Sbjct: 116 RRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174

Query: 109 SIDALADAINEYKGGVIIVSHDERLIRD 136
            I  L + IN     V++ +HD  L+  
Sbjct: 175 EIMRLFEEINRLGTTVLMATHDLELVNR 202

Length = 223

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 75  LSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVIIVS 128
           LSGGQ+ R+ +A  L LN P +I+ DEP + LD+ S+ A     L D   E     + +S
Sbjct: 110 LSGGQRQRIGIARALALN-PKLIVADEPVSALDV-SVQAQILNLLKDLQEELGLTYLFIS 167

Query: 129 HDERLIRDTECTLWVIENQTIEEIDGDFDD--------YRKELLEA 166
           HD  ++R     + V+    I EI G  ++        Y K LL A
Sbjct: 168 HDLSVVRYISDRIAVMYLGKIVEI-GPTEEVFSNPLHPYTKALLSA 212

Length = 268

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 63  LAGHAHTIKM-----KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
           LAG + T +M     K  SGG + R+ALA      PD+++LDEPTN+LD+ ++  L   +
Sbjct: 328 LAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL 387

Query: 118 NEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEAL 167
            ++    I+VSH    +      +  +  Q +    GD+D + +   E L
Sbjct: 388 LKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQL 437

Length = 718

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDE 131
            SGG+K R  + +L L  P + ILDEP + LDI+++  +A+ IN  +    GV+I++H +
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204

Query: 132 RL 133
           RL
Sbjct: 205 RL 206

Length = 251

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 52  EKARKQLGTFGLAGHAHTIKM-KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI--- 107
           E+A + L   GL+G  +       LSGG + RVALA      PDV++LDEP + LD    
Sbjct: 110 ERAEELLELVGLSGFEN--AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167

Query: 108 ESI-DALADAINEYKGGVIIVSHD 130
           E + + L D   E    V++V+HD
Sbjct: 168 EQLQEELLDIWRETGKTVLLVTHD 191

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 19  RLRIGRFDQHSG--EHLTAEET---PAEYLQRLFNL-PYEKARKQLGTFGLAGHAHTIKM 72
           R  IG   Q       LTA +      E    L      E+AR  L   GL  H      
Sbjct: 81  RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-YP 139

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVS 128
            +LSGGQK RVA+A   ++ P +++ DEPT  LD +S    ++ +     E    ++IV+
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199

Query: 129 HDERL 133
           HD R+
Sbjct: 200 HDNRI 204

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 12/92 (13%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE--- 108
            +AR+ L   GLAG   +   + LSGGQ+ RVA+A      P+VI+ DEPT+ LD E   
Sbjct: 123 ARARELLAKVGLAGKETSYP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181

Query: 109 ----SIDALADAINEYKGGVIIVSHDERLIRD 136
               +I  LA    + K  ++IV+H+    RD
Sbjct: 182 EVLNTIRQLA----QEKRTMVIVTHEMSFARD 209

Length = 250

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---E 108
            +A + L   GL   A+  +  +LSGG++ RVA+A   +N P +++ DEPT NLD    +
Sbjct: 124 SRALEMLAAVGLEHRANH-RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182

Query: 109 SIDALADAINEYKG-GVIIVSHD----ERLIRDTE 138
           SI  L   +N  +G   ++V+HD    +R+ R  E
Sbjct: 183 SIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLE 217

Length = 233

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 25  FDQ-HSGEHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQ 79
           F Q +   HLT +E   E   R+  L  ++A  +    L    L  +A    +  LSGGQ
Sbjct: 88  FQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH-LSGGQ 146

Query: 80  KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI---IVSHDERLIRD 136
           + RVA+A   +  P V++ DEPT  LD E    +   I E     I   IV+H+  + R 
Sbjct: 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARK 206

Query: 137 TECTLWVIENQTIEE 151
           T   +  +EN  I E
Sbjct: 207 TASRVVYMENGHIVE 221

Length = 242

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD---AINEYKGGVIIV 127
           K+ +LSGG++ RVALA   L  P +I+ DEPT +LD ++ D + D    +N+    +IIV
Sbjct: 131 KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIV 190

Query: 128 SHD 130
           +HD
Sbjct: 191 THD 193

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 15/135 (11%)

Query: 12  GELKKNHRLRIGRFDQHSGEH--LTAEETPAEYLQRLFNLPYEKARKQLGT----FGLAG 65
           G L +  + RIG   +  G +  +T E+    YL  L  +P  + +K+L        + G
Sbjct: 64  GPLSQEIKNRIGYLPEERGLYPKMTVEDQLK-YLAELKGMPKAEIQKKLQAWLERLEIVG 122

Query: 66  HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GG 123
                K+K+LS G + ++      ++ P+++ILDEP + LD  +++ L DAI E K  G 
Sbjct: 123 KKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181

Query: 124 VIIVS-----HDERL 133
            II S     H E L
Sbjct: 182 TIIFSSHRMEHVEEL 196

Length = 300

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 56.0 bits (136), Expect = 8e-10
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 17/107 (15%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
           LSGG + RV +A      P ++I DEPT  LD+      +D L +   E    +I+++HD
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213

Query: 131 ERLIR---DTECTL---WVIENQTIEEIDGDFDD----YRKELLEAL 167
             ++    D    +    ++E   +EEI   F +    Y + LL +L
Sbjct: 214 LGVVAEIADRVAVMYAGRIVEEGPVEEI---FKNPKHPYTRGLLNSL 257

Length = 316

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 28/91 (30%), Positives = 54/91 (59%)

Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131
           + D SGG + R+ LA+  +   D+++LDEPTN+LD++++  L   +  Y+G +I++SHD 
Sbjct: 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDR 206

Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKE 162
             +      +  IE Q++ E  G++  +  +
Sbjct: 207 DFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQ 237

Length = 638

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---IE 108
            + R+ L   G +G         LSGG+K RVA+A      PDV++LDEPT  LD    E
Sbjct: 106 RRVREALTAVGASGLRER-PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164

Query: 109 SIDALADAINEYKGGVIIVSHDERLI 134
            + A+   +      V+I +HD  L 
Sbjct: 165 QMLAILRRLRAEGMTVVISTHDVDLA 190

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 31  EHLTAEETPAEYLQRLFNLPYEKARKQL----GTFGLAGHAHTI----KMKDLSGGQKAR 82
             LT  ET          LP + +            L   A T      +K +SGG++ R
Sbjct: 94  PGLTVRETLTYTAI--LRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRR 151

Query: 83  VALAELTLNAPDVIILDEPTNNLD 106
           V++A   L  P V+ILDEPT+ LD
Sbjct: 152 VSIAVQLLWDPKVLILDEPTSGLD 175

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 32  HLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
           HLT  E       ++  +      E+A + L   GLA  A       LSGGQ+ RVA+A 
Sbjct: 90  HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-YPAQLSGGQQQRVAIAR 148

Query: 88  -LTLNAPDVIILDEPTNNLDIESIDALADAINEY-KGG--VIIVSHDERLIRD 136
            L +N P V++ DEPT+ LD E +  + D + +  + G  +++V+H+    R+
Sbjct: 149 ALAMN-PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 8/88 (9%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQK R+A+A   L  P +++LDE T+ LD ES   + +A++    G   I+++H  R
Sbjct: 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH--R 197

Query: 133 L--IRDTECTLWVIENQTIEEIDGDFDD 158
           L  IR+ +    V++N  + E  G  D+
Sbjct: 198 LSTIRNADLIA-VLQNGQVVEQ-GTHDE 223

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   L  P ++ILDE T+ LD ES   +  A+          +++H   
Sbjct: 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLS 198

Query: 133 LIRDTECTLWVIENQTIEEI 152
            I + +  + V+E+  I E 
Sbjct: 199 TIENADRIV-VLEDGKIVER 217

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES- 109
            E+A   L   GLA  A+  +   LSGGQ+ RVA+A      PD+I+ DEP  +LD ++ 
Sbjct: 123 KERALSALERVGLADKAYQ-RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181

Query: 110 ---IDALADAINEYKGGVIIVS 128
              +D L   IN+  G  +I++
Sbjct: 182 KQVMDYLKR-INKEDGITVIIN 202

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIES 109
             +AR+ L   GL     T  + DLS  Q+  V +A  L+ +A  V+ILDEPT  L ++ 
Sbjct: 123 RRRARELLARLGLDIDPDT-LVGDLSIAQRQMVEIARALSFDA-RVLILDEPTAALTVKE 180

Query: 110 IDALADAINEYKG---GVIIVSH 129
            + L D I   K     +I +SH
Sbjct: 181 TERLFDLIRRLKAQGVAIIYISH 203

Length = 500

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 33  LTAEETPAEYLQRLFNLPYEKARKQ-LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLN 91
           LTA E    + QRL     ++A  + L   GLAG    + ++ LS GQ+ RVALA L L 
Sbjct: 89  LTALENLR-FYQRLHGPGDDEALWEALAQVGLAGFED-VPVRQLSAGQQRRVALARLWLT 146

Query: 92  APDVIILDEPTNNLDIESIDALADAINEY--KGG-VIIVSH 129
              + ILDEP   +D + +  L   + ++  +GG VI+ +H
Sbjct: 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187

Length = 204

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSH 129
           +LSGGQK RVA+A +    P ++ILDEPT  LD +  D + + I     EY   +I+VSH
Sbjct: 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203

Length = 287

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 43  LQRLFNLPYE----KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIIL 98
            + LF L  +    +A   L   GL   A+  +   LSGGQ+ RVA+A   +  P +I+ 
Sbjct: 110 WRSLFGLFPKEEKQRALAALERVGLLDKAYQ-RADQLSGGQQQRVAIARALMQQPKLILA 168

Query: 99  DEPTNNLDIES----IDALADAINEYKGGVIIVS-HDERLIR 135
           DEP  +LD  S    +D L   IN  +G  +IVS H   L R
Sbjct: 169 DEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQVDLAR 209

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
            +  + L   GLA  A   K+++L+GG + RV +A   L+ P +++LDEPT  LD  S  
Sbjct: 111 ARIAELLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRA 169

Query: 112 ALADAINEYKGGVIIVSHDERLIRDTE-CTLW 142
           A             I +H   L RD     LW
Sbjct: 170 A-------------ITAHVRALARDQGLSVLW 188

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----I 107
            +  + L   GL G A   K   LSGGQ+ RVALA   +  P V++LDEP + LD     
Sbjct: 115 ARVEEALELVGLEGFADR-KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173

Query: 108 ESIDALADAINEYKGGVIIVSHD 130
           +    L +   E     + V+HD
Sbjct: 174 QMRKELKELQRELGITFVYVTHD 196

Length = 352

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
             A+  L   GL      +  + LSGG++ RVALA      PDV+  DEPT NLD ++ D
Sbjct: 125 NGAKALLEQLGLGKRLDHLPAQ-LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183

Query: 112 ALADAI----NEYKGGVIIVSHDERLIRDTECTLWVIENQTIEE 151
            +AD +     E+   +I+V+HD +L    +  L ++  Q  EE
Sbjct: 184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227

Length = 228

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 32  HLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
           HLT ++   E   R+  L  ++A  +    L    L  +A    +  LSGGQ+ RVA+A 
Sbjct: 96  HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH-LSGGQQQRVAIAR 154

Query: 88  LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVI---IVSHDERLIRDTECTLWVI 144
             +  P V++ DEPT  LD E    +   I E     I   IV+H+  + R T   +  +
Sbjct: 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214

Query: 145 ENQTIEE 151
           EN  I E
Sbjct: 215 ENGHIVE 221

Length = 242

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 15/88 (17%)

Query: 32  HLTAEETPAEYLQRLFNLP---YEKARKQ-----LGTFGLAGHAHTI-----KMKDLSGG 78
            LT  E      Q    +P    +K +++     L   GL   A+T      ++K LSGG
Sbjct: 113 TLTVREH--LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGG 170

Query: 79  QKARVALAELTLNAPDVIILDEPTNNLD 106
           ++ R+A A   L  P ++  DEPT+ LD
Sbjct: 171 ERKRLAFASELLTDPPLLFCDEPTSGLD 198

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 23/143 (16%)

Query: 7   LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYL---QRLF-------NLPYEKARK 56
            +P +G ++ N R+     D   G  L  E+    Y+    RLF       NL Y   + 
Sbjct: 48  TRPDEGRIELNGRVL---VDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104

Query: 57  QLGTFG----LAGHAHTIKMK--DLSGGQKARVALAELTLNAPDVIILDEPTNNLDI--- 107
               F     L G  H +      LSGG+K RVA+    L AP+++++DEP  +LD+   
Sbjct: 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164

Query: 108 -ESIDALADAINEYKGGVIIVSH 129
            E +  L    +E    ++ VSH
Sbjct: 165 REILPYLERLRDEINIPILYVSH 187

Length = 352

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGG++ R+ALA   L+   + +LDEPT  LD  +   +   + E+  G  +++V+H  R
Sbjct: 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLR 534

Query: 133 LIRDTECTLWVIENQTIEE 151
            +   +  + +   + IEE
Sbjct: 535 GLERMDRIIVLDNGKIIEE 553

Length = 573

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
           LSGG+K RVA+A   L  P +++LDE T+ LD  +   +  A+ +   G   I+++H
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAH 194

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 12/143 (8%)

Query: 18  HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIK 71
            R R+G   Q       LT  E  A  L+    LP    R+     L   GL G A  + 
Sbjct: 83  IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY 142

Query: 72  MKDLSGGQKARVALAE-LTLNAPDVIILDEPTNNLD-IES--IDALADAINEYKGG-VII 126
             +LSGG + RVALA  + L+ P+++ LDEPT+ LD I +  ID L   +N+  G  VI+
Sbjct: 143 PSELSGGMRKRVALARAIALD-PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM 201

Query: 127 VSHDERLIRDTECTLWVIENQTI 149
           V+HD   +      + V+ +  +
Sbjct: 202 VTHDLDSLLTIADRVAVLADGKV 224

Length = 263

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 52.5 bits (126), Expect = 9e-09
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 58  LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
           L   GL G      +  LS GQ+ RVALA L L+   + ILDEPT  LD   +   A+A+
Sbjct: 110 LARVGLNGFED-RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168

Query: 118 NEY--KGGVIIVS 128
             +  +GG+++++
Sbjct: 169 AGHCARGGMVVLT 181

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 32  HLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
           H T  E    +   +  +P     E+A + L   GL G+A      +LSGG + RV LA 
Sbjct: 120 HRTVLEN-VAFGLEVQGVPKAEREERALEALELVGLEGYADK-YPNELSGGMQQRVGLAR 177

Query: 88  LTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
              N PD++++DE  + LD     E  D L +   + K  ++ ++HD
Sbjct: 178 ALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD 224

Length = 386

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
           LSGGQ+ RV +A    N PD++I DEPT  LD     + +D L +   E    ++ ++HD
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217

Query: 131 ERLIR---DTECTLW---VIENQTIEEIDGDF----DDYRKELLEA 166
             ++R   D    +    ++E  T E +   F      Y ++LL A
Sbjct: 218 LGIVRKFADRVYVMQHGEIVETGTTETL---FAAPQHPYTRKLLAA 260

Length = 534

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 13/105 (12%)

Query: 75  LSGGQKARVALA-ELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
           LSGGQ+ RVA+A  L L  P ++ILDEP + LD     + ++ L D   E     + +SH
Sbjct: 430 LSGGQRQRVAIARALALE-PKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488

Query: 130 DERLIRDTECTLWVIENQTIEE-------IDGDFDDYRKELLEAL 167
           D  ++R     + V+ +  I E        +     Y ++LL A+
Sbjct: 489 DLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAAV 533

Length = 539

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 32  HLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
           HLT  E  A +  +L  +P  + R +    L   GL G  +     +LSGGQ+ RVALA 
Sbjct: 86  HLTVAENIA-FGLKLRGVPKAEIRARVRELLELVGLEGLLNR-YPHELSGGQQQRVALAR 143

Query: 88  LTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
                P +++LDEP + LD +      + L +   E     I V+HD
Sbjct: 144 ALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 75  LSGGQKARVALA----ELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIV 127
           LSGG+K   ALA      +L    + ILDE    LD     ALA+AI E+      VI++
Sbjct: 78  LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137

Query: 128 SHDERLI 134
           +H   L 
Sbjct: 138 THLPELA 144

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 32  HLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI--KMKDLSGGQKARVALAELT 89
           H+T  +  A  L++      E  RK L    + G  H +  K + LSGG++ RVA+A   
Sbjct: 85  HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL 144

Query: 90  LNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
           +  P +++LDEP + LD+ +     + L     E+   V+ V+HD
Sbjct: 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHD 130
           LSGG+K RVA+A +    P V++LDEPT  LD + +  L D +N     Y   VI  +H 
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197

Query: 131 ERLIRDTECTLWVIEN------QTIEEI 152
             L+ +    ++V++        T+EEI
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYGTVEEI 225

Length = 277

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 58  LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
           L   GLAG+  T+ ++ LS GQK R+ALA L L+   + +LDEP  NLD+E I  +   I
Sbjct: 122 LAIVGLAGYEDTL-VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180

Query: 118 NEY---KGGVIIVSH 129
           + +    G  ++ +H
Sbjct: 181 SAHLRGGGAALVTTH 195

Length = 214

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 62  GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE---SIDALADAIN 118
           GL+  A       LSGGQK RVA+A    N P +++ DE T+ LD E   SI  L   IN
Sbjct: 130 GLSDKADR-YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN 188

Query: 119 EYKG-GVIIVSHDERLIRD------TECTLWVIENQTIEEID 153
              G  +++++H+  +++             ++E  T+ E+ 
Sbjct: 189 RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230

Length = 339

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---- 106
            E+A + L   GL G  H     +LSGG + RV LA      PD++++DE  + LD    
Sbjct: 138 EERAAEALELVGLEGWEHK-YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196

Query: 107 IESIDALADAINEYKGGVIIVSHD 130
            E  D L     E +  ++ ++HD
Sbjct: 197 REMQDELLRLQAELQKTIVFITHD 220

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
            LSGGQ+ R+ +A      P+V+++DEPT+ LD  S   + + I E K    ++IV+H
Sbjct: 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206

Length = 253

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDER 132
           SGG+K R  + ++ L  P + ILDE  + LDI+++  +A+ IN  +      +I++H +R
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205

Query: 133 LIR 135
           L+ 
Sbjct: 206 LLN 208

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA-PDVIILDEPTNNLDIESI 110
           E+AR+ L   GL   A      +LS GQ+ R+ +A   L   P +++LDEP   L+ E  
Sbjct: 128 ERARELLEFVGLGELADRP-AGNLSYGQQRRLEIA-RALATQPKLLLLDEPAAGLNPEET 185

Query: 111 DALADAI----NEYKGGVIIVSHDERLIRD 136
           + LA+ I    +     ++++ HD +L+  
Sbjct: 186 EELAELIRELRDRGGVTILLIEHDMKLVMG 215

Length = 250

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 12/100 (12%)

Query: 49  LPYEKA-RKQLGTFGLAG----HAHTI--KMKD-LSGGQKARVALAELTLNAPDVIILDE 100
           LP E A  K + T  + G     A  I  K  D LS G++ RVALA++ +  P ++ILDE
Sbjct: 394 LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE 453

Query: 101 PTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRD 136
           PT  +D  +   +  +I     E +   IIVSHD   + D
Sbjct: 454 PTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLD 493

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHD 130
           LSGG+K RVALA      P++++LDEP + LD      L   + +        VI V+HD
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191

Query: 131 -ERLIRDTECTLWVIENQTI 149
                   +  + + + +  
Sbjct: 192 LSEAEYLADRIVVMEDGRLQ 211

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 19/116 (16%)

Query: 8   QPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYL---QRLF-------NLPYEKARKQ 57
           +PQ+G +  N R+    FD   G  L  E+    Y+    RLF       NL Y  A+  
Sbjct: 49  RPQKGRIVLNGRVL---FDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSM 105

Query: 58  LGTF----GLAGHAHTIKM--KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
           +  F     L G    +      LSGG+K RVA+    L AP+++++DEP  +LD+
Sbjct: 106 VAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161

Length = 352

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LS GQ  R+ALA   L    +++LDEPT +LD  S   +  A+N        ++V+H   
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH--- 542

Query: 133 LIRDTEC--TLWVIENQTIEEIDGDFDD 158
            + D      +WV+++  I +  GD+ +
Sbjct: 543 QLEDLAQWDQIWVMQDGQIVQ-QGDYAE 569

Length = 588

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 11/121 (9%)

Query: 19  RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKM 72
           R  IG   Q++   E LT  E   E + RL+ LP ++A ++    L  F L G A    +
Sbjct: 65  RRSIGIVPQYASVDEDLTGREN-LEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRPV 122

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSH 129
              SGG + R+ +A   ++ PDV+ LDEPT  LD  +  A+ D I   K     +++ +H
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182

Query: 130 D 130
            
Sbjct: 183 Y 183

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 51.2 bits (122), Expect = 6e-08
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG----VIIVSHD 130
           LSGGQK R+++A   +  P ++ILDE T++LD +S   +   IN  KG      II++H 
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639

Query: 131 ERLIRDTECTLWVI---ENQTIEEIDGDFDDYRKELLE 165
              IR    T++V+   E  +  ++D   +D  K+  E
Sbjct: 640 LSTIRYAN-TIFVLSNRERGSTVDVDIIGEDPTKDNKE 676

Length = 1466

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
           LSGG++ R+ALA   L    +++LDEPT +LD E+ D L + +     G  V++++H  
Sbjct: 472 LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 7/111 (6%)

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI----DALADAINEY 120
            H  T   +DLSGG+K RV LA      P + + DEPT  LD ++     +AL +A+   
Sbjct: 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS 218

Query: 121 KGGVIIVSHDERLIRD-TECTLWVIENQTIEEIDGDFDDYRKELLEALGEV 170
              +++ SH   +I D ++  +W +EN  I+E  G  D+     +E + EV
Sbjct: 219 GISMVLTSHWPEVIEDLSDKAIW-LENGEIKEE-GTPDEVVAVFMEGVSEV 267

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 58  LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
           L   GL     T  +K+LSGG+  RV++A    N P+V++LDEPT+ LD  S + + + I
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174

Query: 118 ----NEYKGGVIIVSHD-ERLIRDTECTLWVIENQTIE 150
               N+    VI ++H+ E+  R  + T ++ +   +E
Sbjct: 175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212

Length = 241

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG----VIIVSHD 130
           LSGGQK RVA+A +    P VIILDE T+ LD ++   L D + + K      +I ++HD
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202

Length = 269

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE-- 108
            E+  + L   GL   A       LSGGQK RV +A    N P V++ DE T+ LD E  
Sbjct: 118 EERVLELLELVGLEDKAD-AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176

Query: 109 -SIDALADAINEYKG-GVIIVSHDERLIRDTECTLWVIENQTIEE 151
            SI AL   IN   G  +++++H+  +++     + V+E   + E
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 43/136 (31%), Positives = 58/136 (42%), Gaps = 16/136 (11%)

Query: 7   LQPQQGELKKNHRLRIGRFDQHS----------GEHLTAEETPAEYLQRLFNLPYEKARK 56
           L+P  GE+  +      R D H            E+LTA E   +    L  LP  +  +
Sbjct: 50  LRPTSGEIIFDGH-PWTRKDLHKIGSLIESPPLYENLTAREN-LKVHTTLLGLPDSRIDE 107

Query: 57  QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA 116
            L    L  +    K K  S G K R+ +A   LN P ++ILDEPTN LD   I  L + 
Sbjct: 108 VLNIVDL-TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELREL 166

Query: 117 INEYKG---GVIIVSH 129
           I  +      VI+ SH
Sbjct: 167 IRSFPEQGITVILSSH 182

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           E+  + L    L G+A+  K   LSGGQ+ RVA+A   +N P V++LDEP   LD
Sbjct: 109 ERVAEALDLVQLEGYANR-KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 62  GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-NEY 120
           GL G  H      LSGGQ+ARVAL    L  P  ++LDEP + LD+   D     + +E 
Sbjct: 123 GLDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181

Query: 121 KGG---VIIVSHDERLIRDTECTLWVIENQTIEE 151
           +      + V+HD   ++D      VIE    E+
Sbjct: 182 RAAGIPTVQVTHD---LQDVPAGSRVIEMAQWEQ 212

Length = 213

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKGGVIIVSHDE 131
           LSGGQK RVA+A +    P++I+LDEPT+ LD      I  L   +N+    +II +HD 
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV 197

Query: 132 RLI 134
            L+
Sbjct: 198 DLV 200

Length = 275

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 75  LSGGQKARVALAE-------LTLNAP-DVIILDEPTNNLDIESIDALADAINEYKGG--- 123
           LSGG++   +LA        L   A  +++ LDEP   LD E ++ LA+ + E       
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875

Query: 124 VIIVSHDERLI 134
           +II+SH E L 
Sbjct: 876 IIIISHVEELK 886

Length = 908

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 12/65 (18%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD-------IESIDALADAINEYKGG 123
           K++ LSGG++ RV++A   ++ P ++ LDEPT+ LD       +  +  LAD      G 
Sbjct: 108 KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-----GR 162

Query: 124 VIIVS 128
            II S
Sbjct: 163 TIICS 167

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----I 107
           + A + L   GLA  A+      LSGGQK RVALA   ++ P +++LDEP   LD    I
Sbjct: 112 DAALQALAAVGLADRANEWPAA-LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170

Query: 108 ESIDALADAINEYKGGVIIVSHD 130
           E  D +     ++   V++V+HD
Sbjct: 171 EMQDLIESLWQQHGFTVLLVTHD 193

Length = 257

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
           LSGGQK RVA+A +    PD+IILDE T+ LD     E ++ +     +    V+ ++HD
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200

Length = 279

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           EKA K L   GL+    +    +LSGGQ  RVA+A +    P+++ LDEP   LD E   
Sbjct: 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182

Query: 112 ALADAINEY-KGG--VIIVSHD 130
            +     +Y K G  VI+V+H+
Sbjct: 183 EMMQLFKDYQKAGHTVILVTHN 204

Length = 287

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSH 129
           LS G++  V +A        ++ILDEPT  L    ++ L   I   +     VI +SH
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
           LSGGQK R+A+A   +  P V+ILDE T+ LD E    L ++ +     V++++H    +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV 677

Query: 135 RDTECTLWVIENQTIE 150
              +  L + +   +E
Sbjct: 678 ERADQILVLKKGSVVE 693

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 75  LSGGQKARVALAELTL-NAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
           LSGGQ+ R+A+A   L ++P ++ILDE T+ LD ES  A+  A++E +     ++++H  
Sbjct: 481 LSGGQRQRIAIARALLRDSP-ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539

Query: 132 RLIRDTECTLWVIENQTIEE 151
             I   +  L V+E+  I E
Sbjct: 540 STIEKADEIL-VVEDGEIVE 558

Length = 582

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 23/145 (15%)

Query: 7   LQPQQGEL----------KKNHRLRIGR-FDQHSGEHLTAEETPAE---YLQRLFNLPYE 52
           LQP  GE+          +K    RIG  F Q +   L  +    +    L  +++LP  
Sbjct: 71  LQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT--QLWWDLPVIDSFYLLAAIYDLPPA 128

Query: 53  KARKQLGTFGLA---GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
           + +K+L                ++ LS GQ+ R  +A   L+ P+++ LDEPT  LD+ +
Sbjct: 129 RFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188

Query: 110 IDA----LADAINEYKGGVIIVSHD 130
            +     L +   E    V++ SH 
Sbjct: 189 QENIRNFLKEYNRERGTTVLLTSHY 213

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
           LSGGQK RVA+A      P +IILDE T+ LD    +E I  +    ++Y+  VI ++HD
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200

Length = 279

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 19  RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPYEKARKQLGT---FGLAGHAHTIKM 72
           R R+G   Q   ++L  + T  E L    R F L    AR  +     F    +    K+
Sbjct: 79  RQRVGVVPQF--DNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV 136

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
            +LSGG K R+ LA   +N PDV++LDEPT  LD
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170

Length = 306

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
           LSGGQ+ R+ +A      P++++LDEPT+ LD ++   + D I E +G   ++IV+H+ +
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242

Query: 132 RLIRDTECTLWVIENQTIE 150
           +  R ++ T++  E   +E
Sbjct: 243 QASRVSDYTMFFYEGVLVE 261

Length = 286

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 9/105 (8%)

Query: 33  LTAEETPAEYLQRLFNLPYEKARKQLG----TFGLAGHAHTIKMKDLSGGQKARVALAEL 88
           LTA E    Y  RL  L  ++ + ++        L  +      +  S G K +VA+A  
Sbjct: 90  LTARENLK-YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE-FSTGMKQKVAIARA 147

Query: 89  TLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHD 130
            ++ P +++LDEPT+ LDI +     D I + K     VI  SH 
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192

Length = 245

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 12/109 (11%)

Query: 75  LSGGQKARVALAELTL-NAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
           LSGG++ R+A+A   L NAP +++LDE T+ LD+E+   + +AI+  +      I++H  
Sbjct: 472 LSGGERQRLAIARAILKNAP-ILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRL 530

Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKE------LLEALGEVVNNP 174
             +R+ +  L++ + + IE+  G F +  ++      LL   G + N P
Sbjct: 531 STVRNADLVLFLDQGRLIEK--GSFQELIQKDGRFYKLLRRSGLLTNQP 577

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 71  KMKDLSGGQKARVALA-ELTLNA-PDVIILDEPTNNLDIESIDALADAINEY---KGGVI 125
           K+  LSGG+  RV LA EL       + ILDEP+  L  + I+ L + I         VI
Sbjct: 84  KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVI 143

Query: 126 IVSHDERLIRDTECTLWVIE 145
           ++ H+  ++   +   W+I+
Sbjct: 144 LIEHNLDVLSSAD---WIID 160

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
           LSGGQ+ R+ +A      P+V++LDEPT+ LD  +   + + I E K    ++IV+H
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH 129
           LSGGQK RVA+A   +  P V+ILDE T+ LD ES   +  A+ ++  +  V++++H
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
           LSGGQ+ R+A+A   +  P ++I DE T+ LD ES   +   + E   G  VII++H
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAH 650

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 13  ELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGH 66
           EL++  R +IG   Q      H+T  +        L   P     EKA + L   GL  +
Sbjct: 64  ELREVRRKKIGMVFQQFALFPHMTILQN-TSLGPELLGWPEQERKEKALELLKLVGLEEY 122

Query: 67  AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV-- 124
            H     +LSGG + RV LA      PD++++DE  + LD    D++ D + + +  +  
Sbjct: 123 EHRYP-DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181

Query: 125 --IIVSHD 130
             + ++HD
Sbjct: 182 TIVFITHD 189

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 8/61 (13%)

Query: 76  SGGQKARVALAE-LTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVIIVSH 129
           SGGQ+ R+A+A  L L+ PDV++ DEP + LD+ S+ A     + D   E     + +SH
Sbjct: 156 SGGQRQRIAIARALMLD-PDVVVADEPVSALDV-SVQAQVLNLMMDLQQELGLSYVFISH 213

Query: 130 D 130
           D
Sbjct: 214 D 214

Length = 327

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKGGVIIVSHDE 131
           LSGG++ RV +A   +N P V++ DEPT NLD    E I  L +  N     V++ +HD 
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197

Query: 132 RLI 134
            LI
Sbjct: 198 GLI 200

Length = 222

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 47.3 bits (112), Expect = 8e-07
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 9/142 (6%)

Query: 19  RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR----KQLGTFGLAGHAHTIKM 72
           R R+    QH     H+T  E   E   ++  L  ++AR    K L   G+   A     
Sbjct: 91  RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP 150

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA---LADAINEYKGGVIIVSH 129
             LSGGQ+ RV++A      P+V++ DEPT+ LD E +     +   + E    +++V+H
Sbjct: 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210

Query: 130 DERLIRDTECTLWVIENQTIEE 151
           +    R     +  +    IEE
Sbjct: 211 EMGFARHVSSHVIFLHQGKIEE 232

Length = 257

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
           LSGGQ+ R+ +A      PDV+++DEP + LD  S  A+ D INE K    ++IV+H+
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHN 206

Length = 258

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 47.3 bits (112), Expect = 8e-07
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES-- 109
           ++A + L   G+   AH  ++  LSGGQ+ RVA+A   +    VI+ DEP  +LD ES  
Sbjct: 131 QRALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESAR 189

Query: 110 --IDALADAINEYKGGVIIVS 128
             +D L D IN+  G  ++V+
Sbjct: 190 IVMDTLRD-INQNDGITVVVT 209

Length = 262

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGG+K RVA+A   L  P ++ILDE T+ LD  +  A+  A+ E   G   ++++H   
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459

Query: 133 LIRDTECTLWVIENQTIEE 151
            I D +  + V++N  I E
Sbjct: 460 TIIDADEII-VLDNGRIVE 477

Length = 497

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E+A K L   G+A  A       LSGGQ+ RVA+A      P+V++ DEPT+ LD E + 
Sbjct: 131 ERAEKYLAKVGIAEKADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVG 189

Query: 112 ALADAIN---EYKGGVIIVSHDERLIRDTECTLWVIENQTIEE 151
            +   +    E    +++V+H+    RD    +  +    IEE
Sbjct: 190 EVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232

Length = 256

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVS 128
             LSGGQ+ RVALA   +  P V +LDEP +NLD +    +   I           I V+
Sbjct: 132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVT 191

Query: 129 HD--ERLIRDTECTLWVIENQTIEEIDGDFDDYRK 161
           HD  E +       + V+ +  I+++    + Y +
Sbjct: 192 HDQVEAMTLAD--RIVVMNDGRIQQVGTPLELYER 224

Length = 338

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 32  HLTAEETPAEYLQRLFNLPYE----KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
           H+T EE  A +  ++  +P      +  + L    L   A   K   LSGGQ+ RVALA 
Sbjct: 56  HMTVEENVA-FGLKMRKVPRAEIKPRVLEALRLVQLEEFADR-KPHQLSGGQQQRVALAR 113

Query: 88  LTLNAPDVIILDEPTNNLDIESIDALAD---AINEYKG-GVIIVSHDER 132
             +  P +++LDEP + LD +  D +      I E  G   + V+HD+ 
Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 41  EYLQ---RLFNLPYEKARKQLGTF----GLAGHAHTIKMKDLSGGQKARVALAELTLNAP 93
           EYLQ    ++ +  +  ++++       GL    H  K+  LS G + RV LA+  ++ P
Sbjct: 94  EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQLSKGYRQRVGLAQALIHDP 152

Query: 94  DVIILDEPTNNLD 106
            V+ILDEPT  LD
Sbjct: 153 KVLILDEPTTGLD 165

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           + A+  L   GL           LSGGQK RVA+A +    P+++I DEPT  LD +   
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEH 213

Query: 112 ALADAINEYKGG---VIIVSH 129
            +   I + K     V +++H
Sbjct: 214 EMMQLILDAKANNKTVFVITH 234

Length = 320

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHDE 131
           SGGQ+ R+A+A   +  P++I+LDEPT+ LD     + +D L D   ++    + +SHD 
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487

Query: 132 RLIR 135
            ++R
Sbjct: 488 AVVR 491

Length = 534

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K K LSGGQ+ RVA+    +  P V +LDEP +NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

Length = 369

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKGGVIIVSHD 130
           LS GQK RVA+A +    PDVI+LDEP   LD    E++  + D ++     VI+ +HD
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197

Length = 274

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI-ESIDALADAINEYKGG--VIIV 127
            + +LSGG+  RVA+A   L   D    DEPT+ LDI + ++  A  I E   G  V++V
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV-ARLIRELAEGKYVLVV 267

Query: 128 SHD 130
            HD
Sbjct: 268 EHD 270

Length = 590

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           +KAR+ +   GL          +LSGGQ  RVA+A +    P+V++LDEPT  LD
Sbjct: 123 QKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177

Length = 290

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
            +LS G++  +A+A   L  P ++ILDE T+N+D E+   + +A+ +   G   II++H 
Sbjct: 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHR 197

Query: 131 ERLIRDTECTLWVIENQTIEE 151
              I++ +  L V+++  I E
Sbjct: 198 LSTIKNADKIL-VLDDGKIIE 217

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIV 127
           + +LSGGQ+ R  +A +     D ++LDEP NNLD+    + +  L    +E    +++V
Sbjct: 133 LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVV 192

Query: 128 SHD 130
            HD
Sbjct: 193 LHD 195

Length = 252

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 75  LSGGQKARV----ALAELTLNAPD--VIILDEPTNNLDI----ESIDALADAINEYKGGV 124
           LSGG++ RV     LA+L         ++LDEPT+ LD+      +       +E    V
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194

Query: 125 IIVSHD 130
           I+V HD
Sbjct: 195 IVVLHD 200

Length = 258

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K K LSGGQ+ RVAL    +  P V ++DEP +NLD
Sbjct: 127 KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 32  HLTAEETPAEYL--QRLFN-LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAEL 88
           HL  E+  A  L  Q++      E+    L   GL   A  +  + LSGG + R+A+A  
Sbjct: 93  HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQ-LSGGMQQRIAIARA 151

Query: 89  TLNAPDVIILDEPTNNLD-------IESIDALADAINEYKGGVIIVSHDE 131
               PDV++LDEP + LD        E I AL + + E    ++ V+HD+
Sbjct: 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT--ILCVTHDQ 199

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 9/134 (6%)

Query: 32  HLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
           HLTA E       R+     E+A KQ    L   GLA  AH     +LSGGQ+ RVA+A 
Sbjct: 91  HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP-SELSGGQQQRVAIAR 149

Query: 88  LTLNAPDVIILDEPTNNLDIE---SIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI 144
                P +++ DEPT+ LD E    +  +   + E    ++IV+H+          L  I
Sbjct: 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI 209

Query: 145 ENQTIEEIDGDFDD 158
           +   I E DGD   
Sbjct: 210 DKGRIAE-DGDPQV 222

Length = 240

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
           LSGGQK RVA+A +    P+ II DEPT  LD     E ++ + +   +Y   +I+++H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203

Length = 280

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 75  LSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
           LSGG + +V LA  L  + P V+ILDEPT  +D+ +   +   I E       V+++S +
Sbjct: 105 LSGGNQQKVVLARWLARD-PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIV 127
            + +LSGG+  RVA+A   L   DV   DEP++ LDI      A  I E       VI+V
Sbjct: 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVV 269

Query: 128 SHD 130
            HD
Sbjct: 270 EHD 272

Length = 591

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
           LSGGQ+ R+ +A      P+V+++DEPT+ LD  S   + + I E K    ++IV+H+
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN 204

Length = 250

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHD 130
           +LSGGQ+ RV +A      P V++LDEP   LD+ + + L +   E  G    +++ +HD
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
           LSGGQ+ R+ +A      PDVI++DEPT+ LD  S   + + + E K    +IIV+H+
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN 225

Length = 271

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINE-YKGGVIIVSHDE 131
           SGGQ+ R+A+A   +  P +IILDEPT++LD      I AL  ++ + ++   + +SHD 
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486

Query: 132 RLIR 135
            ++R
Sbjct: 487 HVVR 490

Length = 529

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSH 129
            LSGG+K RVA+    L++P ++++DEP   LD     E +  L     E+   ++ VSH
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSH 190

Query: 130 D 130
            
Sbjct: 191 S 191

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD 130
           DLSGGQ+ R+ +A      P+VI++DEP + LD  +   + D I E   +  V+IV+H+
Sbjct: 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238

Length = 285

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
               + L    L+ H     M  LSGG++ RV +A      P +++LDEPTN+LD+ +  
Sbjct: 116 AVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL 174

Query: 112 ALADAINEYKGG---VIIVSHD 130
                + E       V+   HD
Sbjct: 175 ETLALVRELAATGVTVVAALHD 196

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 19  RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKM 72
           R +IG   Q      H T  +   E    +  +   +A K+    L   GLA  A  +  
Sbjct: 86  RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPA 145

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVS 128
           + LSGGQ+ RVA+A      P V++ DE T+ LD E +  + + I    +E+   +++V+
Sbjct: 146 Q-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT 204

Query: 129 HDERLIRD 136
           H+    R+
Sbjct: 205 HEMGFARE 212

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHD 130
           LSGG + +VA+A   +  P V+ILDEPT  +D+ +   +   IN++K     +I+VS +
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454

Length = 501

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 44.8 bits (107), Expect = 8e-06
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVII 126
            +KDLSGG+  RVA+A       D+ +LDEP+ +LD+E   A+A AI     E +   ++
Sbjct: 450 NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV 509

Query: 127 VSHD 130
           V HD
Sbjct: 510 VDHD 513

Length = 590

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG----GVIIVSHD 130
           LSGGQK RVA+A +    P +IILDE T+ LD    + +   I + K      VI ++HD
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203

Length = 282

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 74  DLSGGQKARVALAELTLNAP-DVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS 128
           +LSGG+  RVA+A   L+   D+ +LDEP+  LD+E     +  I  +    +    +V 
Sbjct: 115 ELSGGELQRVAIA-ACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVE 173

Query: 129 HD 130
           HD
Sbjct: 174 HD 175

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 44.5 bits (106), Expect = 9e-06
 Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 16/112 (14%)

Query: 32  HLTAEETPAE--YLQRLFN--------LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA 81
           HL  E T AE  YL +L +        L   +AR+QL   G+     T  +K LS GQ+ 
Sbjct: 89  HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQ 147

Query: 82  RVALAE-LTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVII-VSH 129
            V +A+ L  NA  VI  DEPT++L    I+ L   I E +  G VI+ VSH
Sbjct: 148 MVEIAKALARNA-RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198

Length = 501

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHD 130
           LSGGQK RVALA      P +++LDEP   LD +    L   +     E K   + V+HD
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196

Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDYR----KELLEALGEV 170
           +    +    + V+    IE+       +R    + +LE +GEV
Sbjct: 197 QEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEV 240

Length = 353

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.2 bits (104), Expect = 9e-06
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
           LSGGQ+ R+ +A     +P V+++DEP + LD  S   + + I+E K    ++IV+H+ +
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQ 206

Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRK 161
           +  R ++ T +    + +E     +DD +K
Sbjct: 207 QAARVSDKTAFFYMGEMVE-----YDDTKK 231

Length = 250

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 75  LSGGQKARVALAE-LTLNAPDVIILDEPTNNLD 106
           LSGGQK RVA+A  L LN P++II DE T+ LD
Sbjct: 143 LSGGQKQRVAIASVLALN-PEIIIFDESTSMLD 174

Length = 271

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
           LSGGQ+ R+ +A      P+V++LDEP + LD  S   + + I E K    V+IV+H+
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN 214

Length = 260

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 8/88 (9%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGG++ R+A+A   L  P ++ILDE T+ LD+E+   +  A++E   G    I++H  R
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAH--R 529

Query: 133 L--IRDTECTLWVIENQTIEEIDGDFDD 158
           L  +R+ +  L V +N  + E  G FD+
Sbjct: 530 LSTVRNADRIL-VFDNGRVVE-SGSFDE 555

Length = 588

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK----GGVIIVSHD 130
           +SGGQ  ++A+  +    PD+I+LDEPT  LD +S   +   +   +      +I+VSHD
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205

Length = 286

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
            +A +Q     LA    T    DLSGGQ+ R  LA +      V++LDEPT  LDI    
Sbjct: 120 NQAMEQTRINHLADRRLT----DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV 175

Query: 112 ALADAINEYKGG---VIIVSHD 130
            L   + E       V+ V HD
Sbjct: 176 ELMRLMRELNTQGKTVVTVLHD 197

Length = 255

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 69  TIKMKDLSGGQKARVALAEL---TLNAPDVIILDEPTNNLDIESIDALADAIN---EYKG 122
            + +K +S G K  +AL       L    ++++DEP N L  + +  L + +    E   
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGA 243

Query: 123 GVIIVSHDERLIR 135
            +I  +H   L+ 
Sbjct: 244 QLIFTTHSPLLLD 256

Length = 256

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 8/93 (8%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD-E 131
           LSGGQ+ RV +A +    PDVI+LDEPT+ LD  S   + + + E +    +I+V+H   
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMH 208

Query: 132 RLIRDTECTLWVIENQTIEEIDGDFDDYRKELL 164
           +  R ++ T + +    IE     F D ++  L
Sbjct: 209 QASRISDKTAFFLTGNLIE-----FADTKQMFL 236

Length = 252

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHD 130
           LSGGQ+ RVALA      P V++LDEP   LD +    L   +    +E     + V+HD
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190

Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDYRKE----LLEALGEV 170
           +    +    + V+ N  IE+I    + Y       ++  LGEV
Sbjct: 191 QEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEV 234

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 13/86 (15%)

Query: 52  EKARKQLGTFGLAGHAHTIKMK----DLSGGQKARVALAELTLNAPDVIILDEPTNNLD- 106
           +     L   GLAG       K    +LSGG++ RVALA + +    V++LDEP   LD 
Sbjct: 107 QAIEVALARVGLAG-----LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161

Query: 107 ---IESIDALADAINEYKGGVIIVSH 129
               E +D + D   E K  V++V+H
Sbjct: 162 ALRAEMLDLVLDLHAETKMTVLMVTH 187

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
           LSGGQ+ R+ +A      P V+++DEPT+ +DI +  A+   I E K    ++IVSH+
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211

Length = 257

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
           LSGGQ+ R+ +A     +P+VI++DEP + LD  S   + D I++ K    ++IV+H+ +
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ 206

Query: 132 RLIRDTECTLWVIENQTIE 150
           +  R ++ T + +  + IE
Sbjct: 207 QATRVSKYTSFFLNGEIIE 225

Length = 250

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKGGVIIVSHD 130
           LSGGQ  RV LA      P ++ILDE  +NLD+      I  L     ++    + ++HD
Sbjct: 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211

Query: 131 ERLIR 135
            RL+ 
Sbjct: 212 LRLVE 216

Length = 268

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
           LSGGQ+ R+A+A   L    +++LDE T+ LD ES   +  A+     G   +I++H
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAH 533

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
           LSGGQ+ R+A+A   ++ P ++I DE T+ LD ES  A+   +++   G  VII++H
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAH 195

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
           LSGGQ+ R+ +A      PD++++DEP + LD  S   L + + E K    +IIV+H+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN 221

Length = 267

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 58  LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
           L  F L     T  + +LSGG+K R+AL       P +++LDE T+ LD  +   + + I
Sbjct: 117 LARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176

Query: 118 NEY----KGGVIIVSHD 130
           + Y       V+ ++HD
Sbjct: 177 HRYVREQNVAVLWITHD 193

Length = 223

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 73   KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
            K LSGGQK R+A+A   L  P +++LDE T++LD  S
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393

Length = 1466

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---IE 108
           E++ K+   +             LSGGQ+ R+ +A      P+VI+LDEPT+ LD    +
Sbjct: 124 EESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183

Query: 109 SIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIE 150
            I+ L + ++E    VI+  +  + IR  +   ++   + IE
Sbjct: 184 RIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225

Length = 250

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           ++ DLSGG K R+ LA   +N P ++ILDEPT  LD
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204

Length = 340

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 18/131 (13%)

Query: 7   LQPQQGEL----------KKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKA 54
           L+P  G             +  R RIG   Q     + LT  E       RL+ +P  + 
Sbjct: 50  LKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN-LYIHARLYGVPGAER 108

Query: 55  RKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI 110
           R++    L   GL   A  + +K  SGG + R+ +A   ++ P+V+ LDEPT  LD ++ 
Sbjct: 109 RERIDELLDFVGLLEAADRL-VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167

Query: 111 DALADAINEYK 121
             + + I + K
Sbjct: 168 AHVWEYIEKLK 178

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
           LSGGQ+ R+ +A      P+VI++DEP + LD  S   + + ++E K    ++IV+H+
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212

Length = 269

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIV 127
           ++ LS GQ+ R  LA   L+ P V+ LDEPT  LD+ +   + + + EY    +  V++ 
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213

Query: 128 SHD 130
           +H 
Sbjct: 214 THI 216

Length = 325

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K   LSGGQ+ RVA+A   +N P V++LDE  + LD
Sbjct: 141 KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176

Length = 375

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
            SGG++ R+ALA + L    +++LDEPT  LD  +   L   I E      +I ++H
Sbjct: 99  FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKGGVIIVSHD- 130
           LSGGQ+ R+ +A      PDVI++DEPT+ LD      I+ L + + +    ++IV+H  
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM 204

Query: 131 --ERLIRDTECTLWVIE 145
              R I D      + E
Sbjct: 205 QQARRISDRTAFFLMGE 221

Length = 249

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           +LSGGQ  RVA+A +    P +++LDEPT  LD
Sbjct: 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177

Length = 280

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 25/114 (21%)

Query: 27  QHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALA 86
           Q       A  +    +     L             L    +      LSGG+  RV LA
Sbjct: 94  QPDKTRTEAVASALNEVAEALGL----------DDKLGRSVNQ-----LSGGEWQRVRLA 138

Query: 87  ELTLN-APDV------IILDEPTNNLDI---ESIDALADAINEYKGGVIIVSHD 130
            + L   PD+      ++LDEP N+LD+    ++D L   + +    V++ SHD
Sbjct: 139 AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192

Length = 248

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSH 129
           DLSGG+  RVA+A   L      + DEP+  LDIE     A AI     E K   ++V H
Sbjct: 71  DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130

Query: 130 D 130
           D
Sbjct: 131 D 131

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD-E 131
           LSGGQ+ R+ +A      P+++++DEPT+ LD  S   + D + + K    +IIV+H+  
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208

Query: 132 RLIRDTECTLWVIENQTIEE--IDGDFDDYRKELLEA 166
           +  R ++ T + +    +E    D  F + R E  EA
Sbjct: 209 QAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERTEA 245

Length = 252

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG----VIIVSHD 130
           LS GQK RVA+A + +  P V++LDEPT  LD   +  +   + E +      +II +HD
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201

Length = 283

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSH 129
           +LSGG+  RVA+A       D+ +LDEP+  LD+E    +A  I       +   ++V H
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514

Query: 130 D 130
           D
Sbjct: 515 D 515

Length = 591

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           LSGGQ+ RV +A +   +P +I+LDEPT+ LD
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALD 180

Length = 252

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI----DALADAINEYKGGVIIVSHD 130
           LSGGQ+ R+ +A      PDVI++DEPT+ LD  S     D + +   EY   ++IV+H+
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYT--IVIVTHN 205

Length = 251

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 13/119 (10%)

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEY 120
             A   +   LSGG K RVA+A      P V++LDEP   LD        + L     E+
Sbjct: 105 TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164

Query: 121 KGGVIIVSHD---ERLIRDTECTLWVIENQTIEEI-DGDFDDYRKELLEALGEVVNNPS 175
           +  V++V+HD     L+ D    L       I +I +  F   R  L     EVV +PS
Sbjct: 165 RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFPRPRDRL-----EVVEDPS 218

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE 131
           M  LSGG+K R+A+A L  + P   ILDE T+ + ++    +     E+   +  VSH +
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRK 639

Query: 132 RLIRDTECTLWVIENQTIEEIDGD 155
            L +  E  L          +DG 
Sbjct: 640 SLWKYHEYLL---------YMDGR 654

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 62  GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAI 117
           GL       ++  LSGGQ+  ++L   TL+ P +++LDE T  LD       ++  A  +
Sbjct: 137 GLENRLSD-RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195

Query: 118 NEYKGGVIIVSH 129
            E+K   ++V+H
Sbjct: 196 EEHKLTTLMVTH 207

Length = 263

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 75  LSGGQKARVALAELTL-NAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
           LSGGQ+ R+A+A   L +AP ++ILDE T+ LD ES   +  A+     G   ++++H
Sbjct: 470 LSGGQRQRLAIARALLKDAP-ILILDEATSALDNESERLVQAALERLMQGRTTLVIAH 526

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
           LSGGQ+ RVALA   +    +++LDEP + LD     E +  ++   +E K  +++V+H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188

Length = 231

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 47  FNLPYEKARK----QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPT 102
           F +P EKA K    +L   GLA         +LSGGQ  RVA+A +    P+V++LDEPT
Sbjct: 113 FGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172

Query: 103 NNLDIES---IDALADAINEYKGGVIIVSH 129
             LD ++   +  L ++I++    V++V+H
Sbjct: 173 AGLDPKARIEMMQLFESIHQSGQTVVLVTH 202

Length = 288

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSH 129
           +LSGGQ+ R+ +A      P ++++DEPT N+D      + + + E K    +++V+H
Sbjct: 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206

Length = 253

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDER 132
           SGG+K R  + ++ +  P++ ILDE  + LDI+++  +AD +N  + G    IIV+H +R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206

Query: 133 LI 134
           ++
Sbjct: 207 IL 208

Length = 248

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 75  LSGGQKARVALAEL------TLNAPDVIILDEPTNNLDI---ESIDALADAINEYKGGVI 125
           LSGG++ RV LA +       + +   + LDEPT+ LDI        LA  +    G V+
Sbjct: 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL 195

Query: 126 IVSHD 130
            V HD
Sbjct: 196 AVLHD 200

Length = 259

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGG--QKARVALAELTLNAPDVIILDEPTNNLDIES 109
             A + +    +   +    +  LSGG  QK  V LA      P V+ILDEPT  +D+ +
Sbjct: 379 ALAERYIRRLRIKTPSPEQPIGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGA 436

Query: 110 IDALADAINEY--KG-GVIIVS 128
              +   I E   +G  ++++S
Sbjct: 437 KAEIYRLIRELAAEGKAILMIS 458

Length = 500

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGV--IIVSHD 130
           LSGGQ+ RVALA     +P +++LDEP + LD    + L   I +   + GV  I+V+HD
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194

Query: 131 E 131
           +
Sbjct: 195 Q 195

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 58  LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI 117
           L T GL      +    LS GQK  + +  L    P +++LDEP   +     +  A+ +
Sbjct: 132 LATIGLGDERDRLA-ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190

Query: 118 NEYKGG--VIIVSHDERLIRD 136
               G   +++V HD   +R+
Sbjct: 191 KSLAGKHSILVVEHDMGFVRE 211

Length = 249

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAINEYKG-GVIIVSHD 130
           LSGGQ  R+ +A      P +I+LDE  +NLD+     I  L   + +  G   + ++HD
Sbjct: 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210

Query: 131 ERLIRDTECTLWVIEN-QTIEEID 153
            RL++     + V++  Q +EE D
Sbjct: 211 LRLVQSFCQRVAVMDKGQIVEECD 234

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--- 121
           G      +K  S G  AR+A +  T   PD+++LDE     D    +   + +NE     
Sbjct: 138 GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197

Query: 122 GGVIIVSHDERLIRDT-ECTLWVIENQTIEEIDGDFDD 158
             +++VSHD   I+   +  +W +E+  I   +G  ++
Sbjct: 198 KTIVLVSHDLGAIKQYCDRAIW-LEHGQIRM-EGSPEE 233

Length = 249

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHDE 131
           SGG + R+ +A   +  P ++ +DEPT  LD+      +D L   + E    V+IV+HD 
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212

Query: 132 RLIR 135
            + R
Sbjct: 213 AVAR 216

Length = 258

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
           LSGGQ+ R+ +A      PDV+++DEPT+ LD  S   + + I + K    ++IV+H+
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213

Length = 259

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 32  HLTAEETPAEYLQRLFNLPYEKARKQ--------LGTFGLAGHAHTIK----MKDLSGGQ 79
           HLT  ET       L  LP    +++        +   GL    +TI     ++ +SGG+
Sbjct: 154 HLTVRETLV--FCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE 211

Query: 80  KARVALAELTLNAPDVIILDEPTNNLD 106
           + RV++A   L  P ++ILDEPT+ LD
Sbjct: 212 RKRVSIAHEMLINPSLLILDEPTSGLD 238

Length = 659

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL- 133
           LSGGQ+ R+ +A   +  P ++ILDE T+ LD E+   + D +       IIV+H  RL 
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH--RLS 673

Query: 134 -IRD 136
            IRD
Sbjct: 674 TIRD 677

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 70  IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           +++  LSGG K R+ LA   +N P ++ILDEPT  LD
Sbjct: 131 VRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
           +LSGGQ+ R+ +A      P+VI++DEP + LD  S   + + I E K    +IIV+H+
Sbjct: 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206

Length = 252

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
           LSGGQ+ R+ +A      P+VI++DEP + LD  +   + D I + K    VIIV+H+
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207

Length = 253

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 24/80 (30%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGV--IIVSHD- 130
           +LSGGQ+ R+ +A      P++++ DEPT+ LD  +  ++ + I++ K  V  +IV+H+ 
Sbjct: 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220

Query: 131 ERLIRDTECTLWVIENQTIE 150
           ++  R ++ T ++   + IE
Sbjct: 221 QQAARVSDYTAYMYMGELIE 240

Length = 265

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD----I 107
           EKA   L   GL  +AH+    +LSGG + RV LA      PD++++DE  + LD     
Sbjct: 143 EKALDALRQVGLENYAHSYP-DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201

Query: 108 ESIDALADAINEYKGGVIIVSHD 130
           E  D L     +++  ++ +SHD
Sbjct: 202 EMQDELVKLQAKHQRTIVFISHD 224

Length = 400

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEP 101
           LSGGQK R++LA    +  D+ +LD+P
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDP 154

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 50  PYEKA-RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE 108
           P        L  F L     T  + +LSGG+K R++L       P V++LDE T+ LD  
Sbjct: 112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171

Query: 109 SIDALADAINEY----KGGVIIVSHD 130
           +   + + I+ Y       V+ V+HD
Sbjct: 172 NKHNVNEIIHRYVREQNIAVLWVTHD 197

Length = 225

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 52  EKAR--KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
           EK R  + L T GLA  A       LS GQK  + +  L +  P +++LDEP   +  E 
Sbjct: 120 EKDRIEEVLETIGLADEADR-LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEE 178

Query: 110 IDALADAINEYKGG--VIIVSHDERLIRDTECTLWV 143
            +  A+ +    G   V++V HD   +R     + V
Sbjct: 179 TEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTV 214

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSH 129
           LSGGQ+ R+ +A      P+V++LDEPT+ LD  S   + + I E K    ++IV+H
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225

Length = 272

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
           LSGGQ+ R+ +A      P+VI++DEPT+ LD  S   + + I   K    +IIV+H+ +
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQ 210

Query: 132 RLIRDTECTLWVIENQTIEEIDGD 155
           +  R ++ T + +     EE   D
Sbjct: 211 QAGRISDRTAFFLNGCIEEESSTD 234

Length = 254

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD 130
           LSGGQ+ R+ +A      P+VI++DEP + LD  S   + + ++E K    +IIV+H+
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209

Length = 264

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
           +SGGQK R+ALA   L    V+ILDE T+NLD 
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDT 644

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           E A + L   GL G A    +  LSGGQ+ RV +A      P +++LDEP   LD
Sbjct: 107 EIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160

Length = 255

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVII----VSHD 130
           +SGGQ+ RVALA   +  P V++ DEP +NLD     ++ + I E +    I    V+HD
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196

Query: 131 E 131
           +
Sbjct: 197 Q 197

Length = 351

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE---SIDALADAINEYKGGVIIV 127
            +  LSGG+  RVA+A       D    DEP++ LDI+   +   L   + E    V++V
Sbjct: 136 NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVV 195

Query: 128 SHD 130
            HD
Sbjct: 196 EHD 198

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           +LSGGQKARV+LA       DV +LD+P + LD
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814

Length = 1560

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 33  LTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA 92
           L  + TP + ++R       K  + L   GL G  H     +LSGGQK RVA+A    + 
Sbjct: 107 LELDNTPKDEIKR-------KVTELLALVGL-GDKHDSYPSNLSGGQKQRVAIARALASN 158

Query: 93  PDVIILDEPTNNLD---IESIDALADAINEYKG-GVIIVSHDERLIR 135
           P V++ DE T+ LD    +SI  L   IN   G  +++++H+  +++
Sbjct: 159 PKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVK 205

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 16/119 (13%)

Query: 50  PYEKARK----QLGTFGLAGHAHTIKMK--DLSGGQKARVALAELTLNAPDVIILDEPTN 103
             ++AR      L   GL      +K     LSGG   RV +A   L  P  +I DEPT 
Sbjct: 95  LSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154

Query: 104 NLDIES---IDALADAINEYKG-GVIIVSHDERL---IRDTECTL---WVIENQTIEEI 152
           +LD+ +   +  L   + +  G G+++++HD  +   I D    +    ++E  T++EI
Sbjct: 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 14/73 (19%)

Query: 76   SGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESID----ALADAINEYKGG-- 123
            S GQK       R+ALAE       +I LDEPT NLD E+I+    AL + I        
Sbjct: 1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN 1260

Query: 124  --VIIVSHDERLI 134
              +++++HDE  +
Sbjct: 1261 FQLLVITHDEDFV 1273

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 19   RLRIGRFDQHS--GEHLTAEETPAEYLQRLFNLPYEKARKQLGTF----GLAGHAHTIKM 72
            R  +G   QH+    HLT  E    Y Q L    +E+A+ ++       GL  H    + 
Sbjct: 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQ-LKGRSWEEAQLEMEAMLEDTGLH-HKRNEEA 1059

Query: 73   KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIV 127
            +DLSGG + ++++A   +    V++LDEPT+ +D  S  ++ D + +Y+ G  I+
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTII 1114

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG-GVIIVS--HDER 132
           SGG++ RV +A   +    +++LDEPT +LD  +   + + I E K  G  ++   HDE 
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE 210

Query: 133 LIRD 136
           +   
Sbjct: 211 VREL 214

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 62  GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE---SIDALADAIN 118
           GL+  A       LSGGQK RVA+A    + P V++ DE T+ LD     SI  L   IN
Sbjct: 129 GLSDKADRYP-AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187

Query: 119 EYKGGVIIV 127
             + G+ IV
Sbjct: 188 R-ELGLTIV 195

Length = 343

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
           LSGGQ+ R+ +A      P +I+ DEPT+ LD  S   + D I   K    ++IV+H+
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212

Length = 258

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDER 132
           SGG+K R  + ++ L   ++ ILDE  + LDI+++  +A+ IN+       +I+++H +R
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212

Query: 133 LI 134
           L+
Sbjct: 213 LL 214

Length = 252

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSH 129
           LSGGQ+ R+ +A      P+V++ DEPT NLD E+   +     E K    +++V+H
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203

Length = 250

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 49  LPYEKARKQLGTFGLAGHAHTIKMKD---LSGGQKARVALAELTLNAPDVIILDEPTNNL 105
           +P E+  K++    LA +    K ++   LSGGQK RVA+A +    P++IILDE T+ L
Sbjct: 112 IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSML 171

Query: 106 DIESIDALADAINE----YKGGVIIVSHD 130
           D      +   I+E    Y+  V+ ++HD
Sbjct: 172 DPTGRQEIMRVIHEIKEKYQLTVLSITHD 200

Length = 277

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
           LSGGQ+ RVALA   +    +++LDEP + LD     E +  +    +E +  +++V+H
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAIN-EYKGGVIIVSH 129
           +LSGGQK RVALA +     + ++LDEPT  LD    E    L + +N EYK  +I+V+H
Sbjct: 150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209

Query: 130 D 130
           +
Sbjct: 210 N 210

Length = 289

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---E 108
           E A + L   GL G  H   +  LSGG + RV +A      P +++LDEP   LD    E
Sbjct: 111 EIAHQMLALVGLEGAEHK-YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTRE 169

Query: 109 SI-DALADAINEYKGGVIIVSHD 130
            + + L D   E    V++++HD
Sbjct: 170 QMQELLLDLWQETGKQVLLITHD 192

Length = 259

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVIIVSH 129
           LSGG++ RV +A   L  P+++I DEPT  LD+ S+ A     L +   E   G++ ++H
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQAQILQLLRELQQELNMGLLFITH 215

Query: 130 DERLIR 135
           +  ++R
Sbjct: 216 NLSIVR 221

Length = 529

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 70  IKMKDLSGGQKARVALAE-LTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVI 125
            K+ +LS   K  + +A+ L L+A  VII+DEPT++L  + +D L   +N+ +     ++
Sbjct: 141 EKVANLSISHKQMLEIAKTLMLDA-KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199

Query: 126 IVSHDERLIR 135
            +SH    IR
Sbjct: 200 YISHKLAEIR 209

Length = 510

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSH 129
           LSGGQ+ R+ +A     +P+VI++DEP + LD  +   + + I+E +    ++IV+H
Sbjct: 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220

Length = 267

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHDE 131
           SGG + R+ +A   +  P ++ +DEPT  LD+      +D L   + +    VIIV+HD 
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209

Query: 132 RLIR 135
            + R
Sbjct: 210 GVAR 213

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI 110
              A+  L   G A H        LS G++ RV +A   +  P+++ILDEP   LD+ + 
Sbjct: 149 LAAAQWLLELLG-AKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207

Query: 111 DALADAINEYKGG-----VIIVSH 129
           + L + + E         ++ V+H
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTH 231

Length = 257

>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 16/80 (20%)

Query: 75  LSGGQKARVALA-ELTLNAPDVI-ILDEPTNNLD-------IESIDALADAINEYKGGVI 125
           LSGG+  R+ LA ++      V+ +LDEP+  L        IE++  L D  N     V+
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNT----VL 193

Query: 126 IVSHDERLIRDTECTLWVIE 145
           +V HDE  IR  +    VI+
Sbjct: 194 VVEHDEDTIRAAD---HVID 210

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 17/81 (20%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI 134
           LS GQK  +ALA + +  P ++ILDE T N+D  +  A+  A+                +
Sbjct: 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL--------------AAV 522

Query: 135 RDTECTLWVIENQ--TIEEID 153
           R+   TL VI ++  TI E D
Sbjct: 523 RE-HTTLVVIAHRLSTIVEAD 542

Length = 592

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD-E 131
           LSGGQ+ R+ +A +    P+VI++DEP + LD  S   + + + E K    + IV+H+ +
Sbjct: 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQ 207

Query: 132 RLIRDTECTLWVIENQTIE 150
           +  R ++ T +++    +E
Sbjct: 208 QAARASDWTGFLLTGDLVE 226

Length = 251

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD-E 131
           LSGGQ+ R+ +A      P V++LDEP + LD  S   + + I E K    +IIV+H+ +
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224

Query: 132 RLIRDTECTLWVIENQTIE 150
           + +R ++ T + +    +E
Sbjct: 225 QALRVSDRTAFFLNGDLVE 243

Length = 268

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 57  QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA 116
           +L   GL G A  +   +LSGG   R ALA      PD+I+ DEP    D  ++  L   
Sbjct: 127 KLEAVGLRGAAK-LMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL 185

Query: 117 INEYKG--GV--IIVSHD 130
           I+E     GV  ++VSHD
Sbjct: 186 ISELNSALGVTCVVVSHD 203

Length = 269

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 17  NHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLS 76
           N RLRIG+        L  +  P +  +++F          L   GL           L+
Sbjct: 101 NPRLRIGQI-LDFPLRLNTDLEPEQRRKQIFE--------TLRMVGLLPDHANYYPHMLA 151

Query: 77  GGQKARVALAELTLNAPDVIILDEPTNNLD 106
            GQK RVALA   +  P +II DE   +LD
Sbjct: 152 PGQKQRVALARALILRPKIIIADEALASLD 181

Length = 267

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 18/101 (17%)

Query: 34  TAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP 93
            A    A+ L RL NLP         TF              SGG++ RV +A   +   
Sbjct: 127 VARAKAADLLTRL-NLPERLWSLAPATF--------------SGGEQQRVNIARGFIVDY 171

Query: 94  DVIILDEPTNNLDIESIDALADAINEYKG-GVIIVS--HDE 131
            +++LDEPT +LD  +   + + I E K  G  +V   HDE
Sbjct: 172 PILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE 212

Length = 235

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
           +LSGGQ+ R+ +A      P ++++DEP + LD  + + + + I E K    +I+V+H  
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208

Query: 132 RLIRDTE------CTLWVIENQTIEEI 152
           +  +          +  ++E  T +EI
Sbjct: 209 KQAKKVSDRVAFFQSGRIVEYNTTQEI 235

Length = 251

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL----ADAINEYKGGVII 126
           K   LSGGQ+ RVALA      P +++LDEP   LD +  D +     D +       ++
Sbjct: 146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205

Query: 127 VSHDE 131
           V+HD+
Sbjct: 206 VTHDQ 210

Length = 377

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 9/77 (11%)

Query: 75  LSGGQKARVALA-ELTLNAP--DVIILDEPTNNLDIESIDALADAINE--YKGG-VIIVS 128
           LSGG+  R+ LA EL+  +    + ILDEPT  L    +  L + +     KG  V+++ 
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229

Query: 129 HDERLIRDTECTLWVIE 145
           H+  +I+   C  W+I+
Sbjct: 230 HNLDVIK---CADWIID 243

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 10/62 (16%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD------IESIDALADAINEYKGGVIIVS 128
           LSGGQ+ R+ +A      P+VI++DEP + LD      IE  D + +   EY   V++V+
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE--DLIEELAEEYT--VVVVT 256

Query: 129 HD 130
           H+
Sbjct: 257 HN 258

Length = 305

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 8/63 (12%)

Query: 74  DLSGG--QKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIV 127
           ++SGG  Q+  +ALA L   AP  II DEPT +LD+ +    +D L   + +   G+++V
Sbjct: 140 EMSGGMLQRMMIALALLC-EAP-FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV 197

Query: 128 SHD 130
           +HD
Sbjct: 198 THD 200

Length = 254

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 12/63 (19%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDI-------ESIDALADAINEYKGGVIIV 127
           LSGGQ+  + LA      P+V++LDEPT+ LD        E I +LAD +      VIIV
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT-----VIIV 218

Query: 128 SHD 130
           +H+
Sbjct: 219 THN 221

Length = 276

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 75  LSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
           LSGG + ++ LA EL    PD++I  +PT  LD+ +I+ + + + E +     V+++S D
Sbjct: 404 LSGGNQQKLILARELARR-PDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED 462

Length = 501

>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 72  MKDLSGGQKA-------RVALAEL-----TLNAPDVIILDEPTNNLDIESIDALADAINE 119
              LSGG+K          ALA          AP +I LDE    LD E+I +L + + E
Sbjct: 20  SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79

Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIV 127
            +K  S G KAR+A A  T   PD++++DE     D    +     + E       VI+V
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILV 198

Query: 128 SHDERLIRDTECT--LWVIENQTIEEID 153
           SHD   I+   C   L  +E   I    
Sbjct: 199 SHDPSSIKRL-CDRALV-LEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSH 129
           LSGGQ+ R+ +A      P+V+++DEPT+ LD  +   + + I E K    +IIV+H
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTH 282

Length = 329

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGG++ R+ +A   L+   +++LDEPT  LD E+   + + + E+     V++++H  R
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH--R 533

Query: 133 LI 134
           L 
Sbjct: 534 LT 535

Length = 574

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD--IES 109
           ++  +QL   GLA  A   K  +LSGG + RV LA        ++++DEP + LD  I +
Sbjct: 143 KRVDEQLELVGLAQWADR-KPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201

Query: 110 --IDALADAINEYKGGVIIVSHD 130
              D L +  ++ K  ++ VSHD
Sbjct: 202 QLQDELLELQSKLKKTIVFVSHD 224

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
           LSGGQ+ R+ +A      P+V+++DEP + LD  +   + + I+E K    +IIV+H+
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207

Length = 253

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVS 128
           +LSGGQK RV LA        VI+LDEP   +D+++   +   + E +  G  ++VS
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVS 198

Length = 272

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           LSGGQ+ RVALA      P V++LDEP   LD
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALD 168

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 14/73 (19%)

Query: 75  LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK------- 121
           LSGG+K       RVA+A+   N   ++I+DEPT  LD +    L D I EY        
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDII-EYSLKDSSDI 860

Query: 122 GGVIIVSHDERLI 134
             VI++SH   L+
Sbjct: 861 PQVIMISHHRELL 873

Length = 895

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD 115
           K LS G+  +  L +  ++ PD++ILDEP + LD+ S   LA+
Sbjct: 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE 176

Length = 490

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 7/48 (14%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDI-------ESIDALAD 115
           LSGG++ RV LA     A  V++LDEPT +LDI       E +  L D
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187

Length = 402

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHD 130
           LSGG + RV +A      P V+I DEPT  LD+     +   I     E   GVI ++HD
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228

Query: 131 ERLIRDTECTLWV------IENQTIEEI 152
             ++ +    + V      +E  ++E+I
Sbjct: 229 MGVVAEIADRVLVMYQGEAVETGSVEQI 256

Length = 623

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI-ESI 110
           EK  + +   GL   AH + +  LSGG++ R  +A L       ++LDEPT+ LDI   +
Sbjct: 126 EKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184

Query: 111 DALA--DAINEYKG-GVIIVSHD 130
           D LA    +++ +G  VI V HD
Sbjct: 185 DVLALVHRLSQERGLTVIAVLHD 207

Length = 265

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD-------IESIDALADAINEYKGGVIIV 127
           +SGG++ RV++AE  ++   V+  D  T  LD       ++ I  +AD +         V
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL----KTTTFV 174

Query: 128 S 128
           S
Sbjct: 175 S 175

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
           LSGG + +  LA+  L  P ++ILDEPT  +D+
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438

Length = 506

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHDE 131
           LS GQK +VAL  L ++   + +LDEP   LD  S+  +   I E++   G V++ SH +
Sbjct: 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187

Length = 200

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 75  LSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVI 125
           LSGG++       R+AL+        ++ILDEPT  LD E    L D +  Y      VI
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVI 848

Query: 126 IVSHDERL 133
           IVSHDE L
Sbjct: 849 IVSHDEEL 856

Length = 880

>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 73  KDLSGGQKARVALA---------ELTLNAP-DVIILDEPTNNLDIESIDALADAINEYKG 122
             LSGG+    +L+         +    A  + + +DE    LD E+++A+A A+   + 
Sbjct: 122 STLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT 181

Query: 123 G---VIIVSHDERL 133
               V ++SH E L
Sbjct: 182 ENRMVGVISHVEEL 195

SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVII 126
           K  +LS GQK R  LA+L    P+V+++DE   +LD  +   +A  I+    E    +I+
Sbjct: 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563

Query: 127 VSHDERLIR 135
           V+H   +  
Sbjct: 564 VTHRPEVGN 572

Length = 593

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 21/74 (28%), Positives = 29/74 (39%)

Query: 61  FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY 120
             L       K    SG  + R+ALA      PDV+ILDE T+ LD E    L       
Sbjct: 47  DQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106

Query: 121 KGGVIIVSHDERLI 134
              ++    +  +I
Sbjct: 107 LLLLLKSEKNLTVI 120

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
           +LS GQ+  + LA   L  P V++LDE T ++D  +   +   I E      ++ ++H  
Sbjct: 125 NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRL 184

Query: 132 RLIRDTECTLWVIENQTIEEID 153
           R I D +  L V++   ++E D
Sbjct: 185 RTIIDYDKIL-VMDAGEVKEYD 205

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 75  LSGGQKARVALAELTLN-APDV------IILDEPTNNLDIESIDALADAINEYKG---GV 124
           LSGG+  RV LA + L   PD       ++LDEP N+LD+    AL   ++        +
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAI 185

Query: 125 IIVSHD 130
           ++ SHD
Sbjct: 186 VMSSHD 191

Length = 248

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG----VIIVS 128
            +LSGGQ+ RV +A      P ++++DEP   LD  +   L + I E +      ++ V+
Sbjct: 134 HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT 193

Query: 129 HDE 131
           HD 
Sbjct: 194 HDI 196

Length = 309

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHD 130
           LSGGQ+ R+ +A      PDV+++DEP + LD  S   + +   E K    +I+V+H+
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHN 219

Length = 274

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 49  LPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNN 104
           LP  + RK+    L   GL  + H    K LSGGQ   VALA +    P+ +I DE T+ 
Sbjct: 108 LPPIEIRKRVDRALAEIGLEKYRHR-SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSM 166

Query: 105 LDIESIDALADAINEY--KGGVII-VSHD 130
           LD +S  A+ + I +   KG  I+ ++H+
Sbjct: 167 LDPDSGIAVLERIKKLHEKGKTIVYITHN 195

Length = 274

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
           LSGGQ+AR++LA       D+ +LD P   LD+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 18/96 (18%)

Query: 40  AEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILD 99
            E L   F++     RK   +              LSGG++ RV +A      P  ++LD
Sbjct: 114 LEELLEEFHI--THLRKSKASS-------------LSGGERRRVEIARALATNPKFLLLD 158

Query: 100 EPTNNLD---IESIDALADAINEYKGGVIIVSHDER 132
           EP   +D   ++ I  +   + +   GV+I  H+ R
Sbjct: 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic SMC3 proteins

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 63  LAGHAHTIKMKDLSGGQKARVALAELTL------NAPDVIILDEPTNNLDIESIDALADA 116
                   +M+ LSGGQK+ VALA L         AP   + DE    LD +   A+A+ 
Sbjct: 147 NMKQDEQQEMQQLSGGQKSLVALA-LIFAIQKCDPAP-FYLFDEIDAALDAQYRTAVANM 204

Query: 117 INE 119
           I E
Sbjct: 205 IKE 207

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 243

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 12/73 (16%)

Query: 46  LFNLPYEKAR--KQLGTFGL-------AGHAHT-IKMK--DLSGGQKARVALAELTLNAP 93
           LF  P++  R  + +    L        G   T I  +  ++SGGQK RV++A    +  
Sbjct: 700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759

Query: 94  DVIILDEPTNNLD 106
           DV I D+P + LD
Sbjct: 760 DVYIFDDPLSALD 772

Length = 1622

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE--YKGGVIIVSHD 130
           LSGGQ+ R+ +A      P +++LDEPT+ LD  S   + + + E  +   +I+V+H+
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200

Length = 246

>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction only]

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 70  IKMKDLSGGQKARVALAELTLNA--PDVIILDEPTNNLDIESIDALADAINEY--KGGVI 125
            + ++LS G    +ALA L L+   P +++LDEP  +L  + + ALA+ +     +  VI
Sbjct: 266 FRDRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVI 325

Query: 126 IVSHDERLIR--DTECTLWV 143
           + +H  RL+   +     W+
Sbjct: 326 VSTHSPRLLNAVEEHSVFWL 345

Length = 373

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHD-E 131
            SGGQ+ R+ +A      P V++LDEPT+ LD  S   + + + E K     I+V+H+ +
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQ 207

Query: 132 RLIRDTECTLWVIENQTIE 150
           +  R ++ T +++    IE
Sbjct: 208 QAGRISDQTAFLMNGDLIE 226

Length = 251

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNL-DIES 109
           Y +A K L    L   +    + +LS G++  V +A++      VII+DEPT+ L D E+
Sbjct: 119 YAEADKLLARLNLRFSSDK-LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177

Query: 110 IDALADAINEYKG---GVIIVSH 129
            ++L   I E K    G++ +SH
Sbjct: 178 -ESLFRVIRELKSQGRGIVYISH 199

Length = 501

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA-----INEYKGGVIIVS 128
           +LSGGQ+ R+ +A       +++ LD+P + LDI   D L        + + K  +++V+
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199

Query: 129 H 129
           H
Sbjct: 200 H 200

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHD 130
           LSGGQ+ RV +A      P ++++DEP   LD  + D L +       E    ++ V+HD
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-----LADAINEYKGGVIIVS 128
           + SGG + RV +A   L  P ++I DEPT  LD+ ++ A     L +   E+   +I+++
Sbjct: 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV-TVQAQIMTLLNELKREFNTAIIMIT 219

Query: 129 HD 130
           HD
Sbjct: 220 HD 221

Length = 330

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD--AINEYKGGVIIV- 127
           K   LS G +  VA+A L     D+ +LDE   NL  E+ D L +   +    GG++++ 
Sbjct: 120 KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLS 179

Query: 128 SHDERLIR 135
           SH E  I+
Sbjct: 180 SHLESSIK 187

Length = 195

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           LSGGQ+ RVA+    +  P V + DEP +NLD
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166

Length = 356

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 67  AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI----ESIDALADAINEYKG 122
            H  ++  LSGG + +V +    L  P++++LDEPT  +D+    E    +A+   + KG
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443

Query: 123 GVIIVS 128
            +II S
Sbjct: 444 IIIISS 449

Length = 491

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDI 107
           LSGG + +  LA++ L  P V+ILDEPT  +D+
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSH 129
           LSGGQ+ RVALA   +    +++LDEP + LD     E +  ++    E +  +++VSH
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188

Length = 232

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 36.3 bits (85), Expect = 0.004
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPT 102
           DLSGGQ+ ++A+A   +  P +++LDEPT
Sbjct: 131 DLSGGQQQQLAIARALVTRPKLLLLDEPT 159

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL- 133
           LSGGQ+ R+ +A   +  P +++ DE T+ LD  +   +++++   K   I+++H  RL 
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH--RLS 646

Query: 134 -IRDTECTLWVIENQTIEEIDGDFDDYRKELLEALG 168
            IR+ +  ++V++   + +  G +D    EL+   G
Sbjct: 647 TIRNAD-RIYVLDAGRVVQ-QGTYD----ELMAREG 676

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.98
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.98
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.98
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.98
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.98
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.98
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.98
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.98
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.98
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.98
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
COG1123	539	ATPase components of various ABC-type transport sy	99.98
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.98
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.98
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.98
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.98
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.98
PRK10908	222	cell division protein FtsE; Provisional	99.98
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.98
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.98
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.98
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.98
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.98
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.98
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.98
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.98
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.98
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.98
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.98
COG0488	530	Uup ATPase components of ABC transporters with dup	99.98
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.98
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.98
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.98
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.98
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.97
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.97
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.97
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.97
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.97
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.97
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.97
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.97
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.97
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.97
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.97
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.97
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.97
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.97
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.97
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.97
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.97
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.97
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.97
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.97
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.97
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.97
COG4172	534	ABC-type uncharacterized transport system, duplica	99.97
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.97
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.97
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.97
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.97
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.97
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.97
PRK11147	635	ABC transporter ATPase component; Reviewed	99.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.97
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.97
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.97
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.97
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.97
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.97
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.97
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.97
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.97
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.97
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.97
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.97
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.97
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.97
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.97
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.97
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.97
KOG0066|consensus	807		99.97
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.97
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.97
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.97
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.97
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.97
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.97
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.97
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.97
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.97
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.97
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.96
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.96
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.96
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.96
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.96
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.96
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.96
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13409	590	putative ATPase RIL; Provisional	99.96
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.96
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.96
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.96
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.96
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.96
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.96
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.96
COG4988	559	CydD ABC-type transport system involved in cytochr	99.96
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.96
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.96
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.96
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.96
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.96
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.96
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.96
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.96
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.96
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.96
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.96
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.96
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.96
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.96
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03246	173	ABCC_Protease_Secretion This family represents the	99.96
COG4172	534	ABC-type uncharacterized transport system, duplica	99.96
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.96
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.96
PRK10938	490	putative molybdenum transport ATP-binding protein	99.96
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.96
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.96
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.96
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.96
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.95
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.95
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.95
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.95
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.95
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.95
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.95
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.95
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.95
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.95
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.95
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.95
KOG0062|consensus	582		99.95
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.95
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.95
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.95
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.95
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.95
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.95
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.95
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.95
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.95
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.95
KOG0055|consensus	1228		99.95
PLN03211	659	ABC transporter G-25; Provisional	99.95
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.94
PLN03232	1495	ABC transporter C family member; Provisional	99.94
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.94
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.94
KOG0927|consensus	614		99.94
PLN03130	1622	ABC transporter C family member; Provisional	99.94
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.94
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.94
COG4987	573	CydC ABC-type transport system involved in cytochr	99.94
PRK13409	590	putative ATPase RIL; Provisional	99.94
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.94
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.94
COG4559	259	ABC-type hemin transport system, ATPase component	99.94
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.94
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.94
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.94
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.94
PLN03073	718	ABC transporter F family; Provisional	99.94
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.94
KOG0057|consensus	591		99.94
PTZ00243	1560	ABC transporter; Provisional	99.93
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.93
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.93
KOG0058|consensus	716		99.93
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.93
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.93
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.93
KOG0062|consensus	582		99.92
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.92
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.92
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.92
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.92
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.92
KOG0055|consensus	1228		99.92
KOG0059|consensus	885		99.92
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.92
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.92
PLN03232	1495	ABC transporter C family member; Provisional	99.92
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.92
PLN03130	1622	ABC transporter C family member; Provisional	99.92
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.92
PLN03140	1470	ABC transporter G family member; Provisional	99.91
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.91
PTZ00243	1560	ABC transporter; Provisional	99.91
PLN03140	1470	ABC transporter G family member; Provisional	99.91
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.91
KOG0927|consensus	614		99.9
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.9
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.89
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.89
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.89
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.88
KOG0054|consensus	1381		99.87
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.87
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.86
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.86
KOG0061|consensus	613		99.86
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.84
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.84
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.83
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.83
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.83
KOG0066|consensus	807		99.83
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.82
KOG0054|consensus	1381		99.81
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.81
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.81
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.8
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.8
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.79
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.79
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.79
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.79
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.79
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.78
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.78
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.78
KOG0056|consensus	790		99.78
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.74
COG4178	604	ABC-type uncharacterized transport system, permeas	99.71
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.71
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.68
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.67
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.66
KOG0065|consensus	1391		99.65
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.65
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.62
PHA02562	562	46 endonuclease subunit; Provisional	99.61
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.59
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.58
PRK10869	553	recombination and repair protein; Provisional	99.57
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.54
PRK03918	880	chromosome segregation protein; Provisional	99.54
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.54
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.53
PRK01156	895	chromosome segregation protein; Provisional	99.52
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.51
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.51
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.49
KOG0060|consensus	659		99.49
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.47
PRK00064	361	recF recombination protein F; Reviewed	99.44
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.43
KOG2355|consensus	291		99.42
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.38
PRK02224	880	chromosome segregation protein; Provisional	99.35
KOG0064|consensus	728		99.32
KOG0063|consensus	592		99.3
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.26
KOG0065|consensus	1391		99.26
TIGR00611	365	recf recF protein. All proteins in this family for	99.24
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.22
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.22
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.18
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.17
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	99.15
PRK13695	174	putative NTPase; Provisional	99.11
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.08
PRK14079	349	recF recombination protein F; Provisional	99.05
KOG0063|consensus	592		99.04
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.93
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.93
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.85
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.83
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.82
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.77
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.76
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.71
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.55
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.35
cd01128	249	rho_factor Transcription termination factor rho is	98.24
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.21
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.14
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.13
COG4637	373	Predicted ATPase [General function prediction only	97.96
PF13175	415	AAA_15: AAA ATPase domain	97.95
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.94
PRK06067	234	flagellar accessory protein FlaH; Validated	97.8
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.77
KOG0962|consensus	1294		97.76
COG3910	233	Predicted ATPase [General function prediction only	97.72
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.69
PRK13891	852	conjugal transfer protein TrbE; Provisional	97.68
PF13166	712	AAA_13: AAA domain	97.66
KOG0933|consensus	1174		97.65
KOG0964|consensus	1200		97.53
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.49
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.43
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	97.2
KOG0996|consensus	1293		96.97
PRK05399	854	DNA mismatch repair protein MutS; Provisional	96.93
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	96.92
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.9
KOG0018|consensus	1141		96.83
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	96.78
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	96.62
PRK08699	325	DNA polymerase III subunit delta'; Validated	96.6
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	96.59
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	96.59
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	96.37
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.32
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.09
COG3044	554	Predicted ATPase of the ABC class [General functio	96.04
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	95.86
PRK14088	440	dnaA chromosomal replication initiation protein; P	95.62
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	95.28
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	95.25
PRK04863	1486	mukB cell division protein MukB; Provisional	94.98
PF13514	1111	AAA_27: AAA domain	94.93
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	94.61
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	93.95
smart00382	148	AAA ATPases associated with a variety of cellular	93.92
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.18
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	92.95
PRK04296	190	thymidine kinase; Provisional	92.63
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	92.37
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	91.53
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	91.14
COG3593	581	Predicted ATP-dependent endonuclease of the OLD fa	90.63
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	90.4
PRK13764	602	ATPase; Provisional	90.18
PRK07414	178	cob(I)yrinic acid a,c-diamide adenosyltransferase;	89.99
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	89.78
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	87.01
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	86.68

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-40  Score=254.76  Aligned_cols=154  Identities=29%  Similarity=0.385  Sum_probs=129.1

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCCH----HHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLPY----EKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~~----~~~~~~l~~~   61 (184)
                      .|.|+.+|++|+|.+++            |+++|+|||+++  |.+..|+.+++..    ..+.++    +++.++|+++
T Consensus        47 clN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V  124 (240)
T COG1126          47 CLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV  124 (240)
T ss_pred             HHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc
Confidence            47899999999998865            457999999974  6666676666542    234443    4567889999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~  138 (184)
                      |+.+..+ .+|.+|||||||||+|||||+.+|+++|+|||||+|||+...++.+.++++   |.|+|+|||++.|+..++
T Consensus       125 GL~~ka~-~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va  203 (240)
T COG1126         125 GLADKAD-AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA  203 (240)
T ss_pred             Cchhhhh-hCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence            9998776 589999999999999999999999999999999999999999988887654   789999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |||+.|++|++++. ++++++
T Consensus       204 drviFmd~G~iie~-g~p~~~  223 (240)
T COG1126         204 DRVIFMDQGKIIEE-GPPEEF  223 (240)
T ss_pred             heEEEeeCCEEEEe-cCHHHH
Confidence            99999999988763 355443

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.8e-38  Score=244.82  Aligned_cols=167  Identities=26%  Similarity=0.335  Sum_probs=140.5

Q ss_pred             CcccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCC--HHHHHHHHhhCCC
Q psy11928          1 MYAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLP--YEKARKQLGTFGL   63 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~--~~~~~~~l~~~~l   63 (184)
                      ++|+|+.+|++|+|.+++            .+.+.+|||+|...+.+..|+...+....   +.+  .+++.++++.+|+
T Consensus        51 r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL  130 (252)
T COG1124          51 RLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGL  130 (252)
T ss_pred             HHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCC
Confidence            368999999999999875            45699999999877888888876665432   222  3558899999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcC
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~  139 (184)
                      .....+++|.+|||||+||++|||||+.+|++||+|||||+||+....++++++.+    ++.|+|+||||+..+..+||
T Consensus       131 ~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd  210 (252)
T COG1124         131 PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD  210 (252)
T ss_pred             CHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh
Confidence            87666789999999999999999999999999999999999999999999999864    46799999999999999999


Q ss_pred             eEEEEeCCeEEEecC-------ChhHHHHHHHHHh
Q psy11928        140 TLWVIENQTIEEIDG-------DFDDYRKELLEAL  167 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~-------~~~~~~~~~~~~~  167 (184)
                      |+++|++|++++...       +...|.+++++..
T Consensus       211 Ri~Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~  245 (252)
T COG1124         211 RIAVMDNGQIVEIGPTEELLSHPSHPYTRELLEAV  245 (252)
T ss_pred             heeeeeCCeEEEeechhhhhcCCccHHHHHHHHhh
Confidence            999999999987432       2345666666554

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-38  Score=254.99  Aligned_cols=149  Identities=25%  Similarity=0.372  Sum_probs=125.0

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHH---HHhcCCCH----HHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYL---QRLFNLPY----EKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~---~~~~~~~~----~~~~~~l~~   60 (184)
                      .+.++.+|++|+|.+++              |++||++||+++  +-...|+.+++   ....+.++    .++.++++.
T Consensus        51 ~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLel  128 (339)
T COG1135          51 LINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL  128 (339)
T ss_pred             HHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHH
Confidence            46789999999998764              568999999985  33334444433   33334443    457789999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~  136 (184)
                      +||++..+ ++|.+|||||||||+|||||+.+|+|||+|||||+|||.+.+.++++|++    +|.||++|||.++.++.
T Consensus       129 VgL~dk~~-~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~  207 (339)
T COG1135         129 VGLSDKAD-RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKR  207 (339)
T ss_pred             cCChhhhc-cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHH
Confidence            99996665 59999999999999999999999999999999999999999999988864    57899999999999999


Q ss_pred             hcCeEEEEeCCeEEEec
Q psy11928        137 TECTLWVIENQTIEEID  153 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~  153 (184)
                      +|+|+.+|++|++++.+
T Consensus       208 ic~rVavm~~G~lvE~G  224 (339)
T COG1135         208 ICDRVAVLDQGRLVEEG  224 (339)
T ss_pred             HhhhheEeeCCEEEEec
Confidence            99999999999998743

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.3e-37  Score=241.42  Aligned_cols=159  Identities=30%  Similarity=0.383  Sum_probs=130.2

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHHH----HHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARK----QLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~----~l~~~   61 (184)
                      .|.|+++|++|+|.+.+              ++++|++||...  ..+++.+|+...+....+.++..+++    -|+.+
T Consensus        53 ~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~V  132 (263)
T COG1127          53 LILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELV  132 (263)
T ss_pred             HHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhc
Confidence            47899999999998753              467999999875  44555566544444455566554443    47889


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhh
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~  137 (184)
                      ||.....++.|++|||||++|++||||++.+|+++++||||+||||.+...+.++|++    ++.|+++||||++.+..+
T Consensus       133 GL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i  212 (263)
T COG1127         133 GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTI  212 (263)
T ss_pred             CCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhh
Confidence            9987734579999999999999999999999999999999999999999888888764    478999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      ||+++++.+|+|. +.|+.++..+
T Consensus       213 ~Drv~~L~~gkv~-~~Gt~~el~~  235 (263)
T COG1127         213 ADRVAVLADGKVI-AEGTPEELLA  235 (263)
T ss_pred             hceEEEEeCCEEE-EeCCHHHHHh
Confidence            9999999999996 5777766543

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-37  Score=243.28  Aligned_cols=151  Identities=26%  Similarity=0.345  Sum_probs=126.1

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCH----HHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPY----EKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~l~~~~l   63 (184)
                      .|.++++|++|+|.+++           |++|||+-|...  +.+.+|+.+++...   .++++    +++.++|+.+|+
T Consensus        46 MINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqig--LFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL  123 (309)
T COG1125          46 MINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL  123 (309)
T ss_pred             HHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcc--cCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCC
Confidence            46789999999998764           678999999864  45555665555432   22332    467899999999


Q ss_pred             Cc-ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhc
Q psy11928         64 AG-HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        64 ~~-~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~  138 (184)
                      +. ...+++|++|||||||||.+||||+.+|+++||||||++|||.+|..+.+.+.    ++++|||+||||++++.+++
T Consensus       124 ~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLa  203 (309)
T COG1125         124 DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLA  203 (309)
T ss_pred             CHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhh
Confidence            75 34457999999999999999999999999999999999999999998888775    45899999999999999999


Q ss_pred             CeEEEEeCCeEEEecC
Q psy11928        139 CTLWVIENQTIEEIDG  154 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~  154 (184)
                      |||.+|++|+++.+..
T Consensus       204 dri~vm~~G~i~Q~~~  219 (309)
T COG1125         204 DRIAVMDAGEIVQYDT  219 (309)
T ss_pred             ceEEEecCCeEEEeCC
Confidence            9999999999987643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-37  Score=243.70  Aligned_cols=144  Identities=28%  Similarity=0.326  Sum_probs=119.0

Q ss_pred             CcccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC----CHHHHHHHHhhCCCCccc
Q psy11928          1 MYAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL----PYEKARKQLGTFGLAGHA   67 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~   67 (184)
                      ++++|+.+|++|+|.+++      ...+||+||++.  +.++.|+.+++..   ..+.    ..+++.++++.+|+.++.
T Consensus        47 riiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~  124 (248)
T COG1116          47 RLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE  124 (248)
T ss_pred             HHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh
Confidence            368999999999999875      347999999985  4455555544322   1111    124688899999999887


Q ss_pred             ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecCHHHHHhhcCeEEE
Q psy11928         68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l----~~~~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      + ++|++|||||||||+|||||+.+|++|||||||++||..++..+.+.+    .+.+.||++||||.+++-.++|||++
T Consensus       125 ~-~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivv  203 (248)
T COG1116         125 D-KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV  203 (248)
T ss_pred             h-cCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEE
Confidence            6 599999999999999999999999999999999999999987766555    45689999999999999999999999


Q ss_pred             EeCC
Q psy11928        144 IENQ  147 (184)
Q Consensus       144 l~~g  147 (184)
                      |.++
T Consensus       204 l~~~  207 (248)
T COG1116         204 LSNR  207 (248)
T ss_pred             ecCC
Confidence            9984

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.1e-36  Score=237.06  Aligned_cols=146  Identities=29%  Similarity=0.392  Sum_probs=121.0

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|.|+.+|++|+|.+++               +.+|||+||+.+  |-+..|+.+++..   ..+..    .+++..+++
T Consensus        50 iig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n--Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~  127 (226)
T COG1136          50 LLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN--LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLE  127 (226)
T ss_pred             HHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC--CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHH
Confidence            57899999999998653               457999999975  4455566555442   22222    345678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+.+...+++|++|||||||||+|||||+.+|+++|+||||.+||..+.+.+++++.+.    +.|||+||||...+.
T Consensus       128 ~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~  207 (226)
T COG1136         128 VLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK  207 (226)
T ss_pred             hcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence            9999876665689999999999999999999999999999999999999999999998654    679999999999997


Q ss_pred             hhcCeEEEEeCCeEE
Q psy11928        136 DTECTLWVIENQTIE  150 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~  150 (184)
                       .|||++.+++|++.
T Consensus       208 -~~dr~i~l~dG~~~  221 (226)
T COG1136         208 -YADRVIELKDGKIE  221 (226)
T ss_pred             -hCCEEEEEeCCeee
Confidence             79999999999853

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-36  Score=241.90  Aligned_cols=153  Identities=26%  Similarity=0.307  Sum_probs=125.2

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----CC----CHHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----NL----PYEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----~~----~~~~~~~~l~~   60 (184)
                      +|+|++.|++|+|.+++            .++|||+||++.  +...+|+.+++....     ..    .+.++.++|+.
T Consensus        47 iIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~l  124 (345)
T COG1118          47 IIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRL  124 (345)
T ss_pred             HHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHH
Confidence            68999999999998764            357999999985  344455554443211     11    13568889999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~  136 (184)
                      +.++...+ ++|.+|||||||||+|||||+..|++||||||+++||...++.+...|.    +++.|.++||||.+++.+
T Consensus       125 vqL~~la~-ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~  203 (345)
T COG1118         125 VQLEGLAD-RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE  203 (345)
T ss_pred             hcccchhh-cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence            99987765 5999999999999999999999999999999999999998877766664    458899999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      +|||+++|++|+|+.. +++++
T Consensus       204 ladrvvvl~~G~Ieqv-g~p~e  224 (345)
T COG1118         204 LADRVVVLNQGRIEQV-GPPDE  224 (345)
T ss_pred             hcceEEEecCCeeeee-CCHHH
Confidence            9999999999999764 44444

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.5e-36  Score=236.48  Aligned_cols=155  Identities=27%  Similarity=0.344  Sum_probs=126.3

Q ss_pred             cccCcccCCceeEEecCC--------eEEEEEecCCCCCCCccCCHHHHHHHh--cC---------CCHHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNHR--------LRIGRFDQHSGEHLTAEETPAEYLQRL--FN---------LPYEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~--------~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~---------~~~~~~~~~l~~~~   62 (184)
                      .|+|+++|++|+|.+.+.        .+||||||....+.+...|+.+++...  .+         .+++++.+.|+++|
T Consensus        49 ~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vg  128 (254)
T COG1121          49 AILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVG  128 (254)
T ss_pred             HHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcC
Confidence            578999999999987542        579999996542334456777766531  11         12367889999999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~  139 (184)
                      +.+..+ +++++|||||+|||.|||||+++|++|+|||||+|+|+.++..+.++|+++   |+||++||||+..+..++|
T Consensus       129 m~~~~~-r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D  207 (254)
T COG1121         129 MEDLRD-RQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFD  207 (254)
T ss_pred             chhhhC-CcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCC
Confidence            997775 699999999999999999999999999999999999999999999998654   7899999999999999999


Q ss_pred             eEEEEeCCeEEEecCChhHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++.++...+ . .|++++.
T Consensus       208 ~vi~Ln~~~~-~-~G~~~~~  225 (254)
T COG1121         208 RVICLNRHLI-A-SGPPEEV  225 (254)
T ss_pred             EEEEEcCeeE-e-ccChhhc
Confidence            9998876544 3 4555443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-36  Score=249.14  Aligned_cols=159  Identities=29%  Similarity=0.350  Sum_probs=128.8

Q ss_pred             CcccCcccCCceeEEecC---------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCH----HHHHHHHhhCCCCc
Q psy11928          1 MYAHCDLQPQQGELKKNH---------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EKARKQLGTFGLAG   65 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~l~~   65 (184)
                      +.|+|+..|++|+|.+++         ++.||+|||++.  |++++.+|+...+.......+    +++.++++.+++++
T Consensus        49 R~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~  128 (352)
T COG3842          49 RMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG  128 (352)
T ss_pred             HHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh
Confidence            468999999999998764         578999999985  445555554322221222222    46889999999998


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      +.. ++|.+|||||||||+|||||+.+|++||||||+|+||..-|.++...++    +.|.|.|+||||.+++..++|||
T Consensus       129 ~~~-R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI  207 (352)
T COG3842         129 FAD-RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRI  207 (352)
T ss_pred             hhh-hChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccce
Confidence            776 5899999999999999999999999999999999999998877666554    56889999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~~  161 (184)
                      ++|++|+|.. .|++++++.
T Consensus       208 ~Vm~~G~I~Q-~gtP~eiY~  226 (352)
T COG3842         208 AVMNDGRIEQ-VGTPEEIYE  226 (352)
T ss_pred             EEccCCceee-cCCHHHHhh
Confidence            9999999975 566655443

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.8e-35  Score=240.99  Aligned_cols=157  Identities=29%  Similarity=0.448  Sum_probs=128.9

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+.+|++|+|.+.+          ++++||+||++.  +.+|+.+++ .++...++..    .+++.++++.+|+..
T Consensus        50 ~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l-~~~~~l~~~~~~~~~~~~~~~l~~~~L~~  128 (293)
T COG1131          50 ILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENL-EFFARLYGLSKEEAEERIEELLELFGLED  128 (293)
T ss_pred             HHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHH-HHHHHHhCCChhHHHHHHHHHHHHcCCch
Confidence            68999999999998764          346999999985  344444442 2333334432    357889999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---C-cEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---K-GGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~-~tiiivsHd~~~~~~~~~~i  141 (184)
                      .. ++++++||+|||||++||+||+.+|+++||||||+||||.++..++++|+++   + .||+++||.+++++.+||+|
T Consensus       129 ~~-~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v  207 (293)
T COG1131         129 KA-NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRV  207 (293)
T ss_pred             hh-CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEE
Confidence            44 4589999999999999999999999999999999999999999999999765   4 69999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~~  161 (184)
                      +++++|+++. .++.+++..
T Consensus       208 ~il~~G~~~~-~g~~~~l~~  226 (293)
T COG1131         208 IILNDGKIIA-EGTPEELKE  226 (293)
T ss_pred             EEEeCCEEEE-eCCHHHHHH
Confidence            9999999975 556555443

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-35  Score=244.00  Aligned_cols=155  Identities=26%  Similarity=0.329  Sum_probs=127.3

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|||+.+|++|+|.+++         .+.||+|||++.  +.+.+|+.+++.   ...+.+    .+++.+..+.+++++
T Consensus        48 ~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~  125 (338)
T COG3839          48 MIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH  125 (338)
T ss_pred             HHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh
Confidence            68999999999999764         468999999985  445555555443   222322    356788999999998


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      .++ ++|.+|||||||||+|||||+.+|+++|||||+|+||...+..+...|++    ++.|+|+||||..++..++|||
T Consensus       126 lL~-r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri  204 (338)
T COG3839         126 LLN-RKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRI  204 (338)
T ss_pred             HHh-cCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEE
Confidence            876 58999999999999999999999999999999999999988877766654    5789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|++...+.+.+-|
T Consensus       205 ~Vm~~G~i~Q~g~p~ely  222 (338)
T COG3839         205 VVMNDGRIQQVGTPLELY  222 (338)
T ss_pred             EEEeCCeeeecCChHHHh
Confidence            999999997644333334

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.2e-35  Score=235.46  Aligned_cols=167  Identities=23%  Similarity=0.255  Sum_probs=131.9

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCC--CCCCccCCHHHH--H-HHhcC-CC---HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSG--EHLTAEETPAEY--L-QRLFN-LP---YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~--~~l~~~~~~~~~--~-~~~~~-~~---~~~~~~~l~~~   61 (184)
                      .|+|+++|.+|+|.+++           .+.+||+||.+.  ..+++.+.+...  . ...+. .+   .+.+.+.|+.+
T Consensus        47 ~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~  126 (258)
T COG1120          47 CLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL  126 (258)
T ss_pred             HHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHh
Confidence            47899999999999875           357999999864  234444433210  0 00011 11   23577889999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~  137 (184)
                      |+.+... +++.+|||||||||.|||||+++|++|||||||++||+..+.+++++++++    +.|||+|+||++.+.++
T Consensus       127 ~~~~la~-r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry  205 (258)
T COG1120         127 GLEHLAD-RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY  205 (258)
T ss_pred             CcHHHhc-CcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence            9987775 589999999999999999999999999999999999999999999998754    58999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHHHHHHHHHhhh
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYRKELLEALGE  169 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~  169 (184)
                      ||++++|++|++...+.+.+...++.++....
T Consensus       206 ad~~i~lk~G~i~a~G~p~evlT~e~l~~Vyg  237 (258)
T COG1120         206 ADHLILLKDGKIVAQGTPEEVLTEENLREVYG  237 (258)
T ss_pred             CCEEEEEECCeEEeecCcchhcCHHHHHHHhC
Confidence            99999999999986444455566766665543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-35  Score=232.75  Aligned_cols=157  Identities=29%  Similarity=0.413  Sum_probs=129.4

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~   62 (184)
                      .++|+++|++|+|.+++            ++++|||||+|...+ ...|+.+-+.   .+.+.+.    +++.+.++.+|
T Consensus        49 ~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vg  127 (235)
T COG1122          49 LLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVG  127 (235)
T ss_pred             HHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcC
Confidence            57999999999997543            467999999996443 4455555433   2333333    45778899999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhc
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~  138 (184)
                      +.+..+ +++.+|||||||||+||.+|+.+|++|||||||++||+.++..+++.+.++    +.|+|++|||++++..+|
T Consensus       128 l~~~~~-r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~a  206 (235)
T COG1122         128 LEELLD-RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYA  206 (235)
T ss_pred             chhhcc-CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhC
Confidence            988765 699999999999999999999999999999999999999999999999765    479999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHHHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      |++++|++|+++. .|++.++.+
T Consensus       207 d~v~vl~~G~i~~-~g~p~~i~~  228 (235)
T COG1122         207 DRVVVLDDGKILA-DGDPAEIFN  228 (235)
T ss_pred             CEEEEEECCEEee-cCCHHHHhh
Confidence            9999999999964 666544433

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-35  Score=234.70  Aligned_cols=153  Identities=25%  Similarity=0.344  Sum_probs=125.4

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      .+.++++|++|+|.+++               ++++++|||...  +.++.|+.++...   ..+.+    .+++.+.++
T Consensus        73 ~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~  150 (386)
T COG4175          73 LLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREERALEALE  150 (386)
T ss_pred             HHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccchhHhhhhhcceeecCCCHHHHHHHHHHHHH
Confidence            36789999999998753               567999999875  4556666655432   22333    245788999


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l----~~~~~tiiivsHd~~~~~  135 (184)
                      .+||+.+.+ ++|++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|    .++++|||+||||++++.
T Consensus       151 ~VgL~~~~~-~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAl  229 (386)
T COG4175         151 LVGLEGYAD-KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEAL  229 (386)
T ss_pred             HcCchhhhh-cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHH
Confidence            999998776 589999999999999999999999999999999999998777666555    456899999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      ++.+||.+|++|+|+. .|++++
T Consensus       230 riG~rIaimkdG~ivQ-~Gtp~e  251 (386)
T COG4175         230 RIGDRIAIMKDGEIVQ-VGTPEE  251 (386)
T ss_pred             hccceEEEecCCeEEE-eCCHHH
Confidence            9999999999999986 454433

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.4e-35  Score=226.68  Aligned_cols=164  Identities=27%  Similarity=0.349  Sum_probs=135.3

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH-----------hcCC----CHH
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR-----------LFNL----PYE   52 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~-----------~~~~----~~~   52 (184)
                      .|+|+.+|++|+|..++              ++++||+||.++  +.++.++++++..           ..++    ++.
T Consensus        49 ~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~  126 (258)
T COG3638          49 SLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKA  126 (258)
T ss_pred             HHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHH
Confidence            47899999999998764              467999999985  4455555544321           1121    124


Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVS  128 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivs  128 (184)
                      .+.+.|+++|+.+.... +.++|||||||||+|||||+++|+++|.|||+++|||.+.+.+++.|++    .|.|+|++.
T Consensus       127 ~Al~aLervgi~~~A~q-ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nL  205 (258)
T COG3638         127 QALDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNL  205 (258)
T ss_pred             HHHHHHHHcCcHHHHHH-HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEe
Confidence            46778999999877764 8999999999999999999999999999999999999999999999964    478999999


Q ss_pred             cCHHHHHhhcCeEEEEeCCeEEEecCChhHHHHHHHHHhhh
Q psy11928        129 HDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGE  169 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~  169 (184)
                      |+.+.+.++|+|++-|++|+++ |+|+..+..++.+..++.
T Consensus       206 H~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~~~~~~iYg  245 (258)
T COG3638         206 HQVDLAKKYADRIIGLKAGRIV-FDGPASELTDEALDEIYG  245 (258)
T ss_pred             chHHHHHHHHhhheEecCCcEE-EeCChhhhhHHHHHHHhc
Confidence            9999999999999999999997 688888877776666554

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.9e-35  Score=221.31  Aligned_cols=157  Identities=25%  Similarity=0.358  Sum_probs=129.3

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|++++.|++|.|.+++          +++||.++.+..  ..+|+++|+. ++...+++.    +.++.++.+.+++.+
T Consensus        47 miatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~-~Fa~L~~l~~~~~kari~~l~k~l~l~~  125 (245)
T COG4555          47 MIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK-YFARLNGLSRKEIKARIAELSKRLQLLE  125 (245)
T ss_pred             HHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHhChHH
Confidence            57899999999998763          678999995542  3455555532 333444433    356778899999988


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      ..+ +++.+||.||||||+|||||+++|++++|||||||||..++..+.+.+.+.   +.+||++||++++++.+||+++
T Consensus       126 ~~~-rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvi  204 (245)
T COG4555         126 YLD-RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI  204 (245)
T ss_pred             HHH-HHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEE
Confidence            776 589999999999999999999999999999999999999999999988765   6799999999999999999999


Q ss_pred             EEeCCeEEEecCChhHHHH
Q psy11928        143 VIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       143 ~l~~g~i~~~~~~~~~~~~  161 (184)
                      ++++|+++. .++.+....
T Consensus       205 vlh~Gevv~-~gs~~~l~~  222 (245)
T COG4555         205 VLHKGEVVL-EGSIEALDA  222 (245)
T ss_pred             EEecCcEEE-cCCHHHHHH
Confidence            999999974 777766543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=2e-34  Score=216.57  Aligned_cols=148  Identities=27%  Similarity=0.370  Sum_probs=122.0

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCC----HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~   61 (184)
                      .|++..+|+.|+|.+++              +++||+|||+..  +..++++|+. +.....+.+    ++++.+.|+.+
T Consensus        47 Li~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA-~pL~v~G~~~~~i~~rV~~~L~~V  125 (223)
T COG2884          47 LIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA-LPLRVIGKPPREIRRRVSEVLDLV  125 (223)
T ss_pred             HHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh-hhhhccCCCHHHHHHHHHHHHHHh
Confidence            46788999999998653              678999999975  3344444432 212222222    35678899999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHHHHHhhc
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~  138 (184)
                      ||.+..+. .|.+|||||||||+||||++++|++||.||||.+|||....++++++.+   .|.||+|.|||.+.+....
T Consensus       126 gL~~k~~~-lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~  204 (223)
T COG2884         126 GLKHKARA-LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR  204 (223)
T ss_pred             ccchhhhc-CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence            99877764 8999999999999999999999999999999999999999998888765   4789999999999999999


Q ss_pred             CeEEEEeCCeEEE
Q psy11928        139 CTLWVIENQTIEE  151 (184)
Q Consensus       139 ~~i~~l~~g~i~~  151 (184)
                      .|++.+++|+++.
T Consensus       205 ~rvl~l~~Grl~~  217 (223)
T COG2884         205 HRVLALEDGRLVR  217 (223)
T ss_pred             CcEEEEeCCEEEe
Confidence            9999999999975

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=2.7e-34  Score=235.57  Aligned_cols=155  Identities=27%  Similarity=0.325  Sum_probs=127.0

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          ++.+||+||++.  +....|+.+++.   ..++..    ..++.++++.+++.
T Consensus        52 ~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  129 (306)
T PRK13537         52 MLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDN--LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE  129 (306)
T ss_pred             HHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            58999999999998753          356999999974  334455555543   223322    23466889999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ...+ +++++||||||||++||+||+++|+++||||||+|||+.++..++++|+++   +.|||++||++++++.+||++
T Consensus       130 ~~~~-~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i  208 (306)
T PRK13537        130 NKAD-AKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRL  208 (306)
T ss_pred             hHhc-CchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence            6654 589999999999999999999999999999999999999999999999764   679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      ++|++|+++. .++.+++.
T Consensus       209 ~il~~G~i~~-~g~~~~l~  226 (306)
T PRK13537        209 CVIEEGRKIA-EGAPHALI  226 (306)
T ss_pred             EEEECCEEEE-ECCHHHHH
Confidence            9999999975 56655553

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-34  Score=238.62  Aligned_cols=154  Identities=22%  Similarity=0.235  Sum_probs=126.8

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+.+|++|+|.+++         ++.|||+||++.  +.+..|+.+++..   ..+.+    .+++.++++.+|+++
T Consensus        49 ~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~  126 (356)
T PRK11650         49 MVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYA--LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP  126 (356)
T ss_pred             HHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--ccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence            68999999999998764         346999999974  4455566655432   12222    245678899999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++    .+.|+|+||||++++..+||++
T Consensus       127 ~~~-~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i  205 (356)
T PRK11650        127 LLD-RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV  205 (356)
T ss_pred             Hhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence            665 58999999999999999999999999999999999999999999888764    3689999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|++.. .++++++
T Consensus       206 ~vl~~G~i~~-~g~~~~~  222 (356)
T PRK11650        206 VVMNGGVAEQ-IGTPVEV  222 (356)
T ss_pred             EEEeCCEEEE-ECCHHHH
Confidence            9999999976 4555544

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.8e-34  Score=236.92  Aligned_cols=153  Identities=26%  Similarity=0.360  Sum_probs=125.5

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~   60 (184)
                      .|+|+++|++|+|.+++              +++|||+||++.  +....|+.+++..   ..+.+    .+++.++++.
T Consensus        50 ~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~  127 (343)
T TIGR02314        50 CVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLAL  127 (343)
T ss_pred             HHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            58999999999998653              346999999974  4444555555432   12222    2356788999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~  136 (184)
                      +|+.+..+ +++++|||||||||+|||||+.+|++|||||||++||+.++..++++|++.    +.|||+||||++++.+
T Consensus       128 vgL~~~~~-~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~  206 (343)
T TIGR02314       128 VGLGDKHD-SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR  206 (343)
T ss_pred             cCCchhhh-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            99987665 589999999999999999999999999999999999999999999988753    6899999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      +||++++|++|++++ .++..+
T Consensus       207 ~~d~v~vl~~G~iv~-~g~~~~  227 (343)
T TIGR02314       207 ICDCVAVISNGELIE-QGTVSE  227 (343)
T ss_pred             hCCEEEEEECCEEEE-EcCHHH
Confidence            999999999999976 454433

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=7.4e-34  Score=232.62  Aligned_cols=155  Identities=26%  Similarity=0.376  Sum_probs=126.8

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          +..+||+||++.  +....|+.+++..   .++..    .+++.++++.+|+.
T Consensus        38 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  115 (302)
T TIGR01188        38 MLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG  115 (302)
T ss_pred             HHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence            68999999999998754          235999999874  3444555555432   22222    23577899999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ...+ +++++|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++   +.|||++||+++++..+||++
T Consensus       116 ~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v  194 (302)
T TIGR01188       116 EAAD-RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI  194 (302)
T ss_pred             hHhC-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence            6654 589999999999999999999999999999999999999999999998764   679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      ++|++|+++. .++.+++.
T Consensus       195 ~~l~~G~i~~-~g~~~~l~  212 (302)
T TIGR01188       195 AIIDHGRIIA-EGTPEELK  212 (302)
T ss_pred             EEEECCEEEE-ECCHHHHH
Confidence            9999999975 55555543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.5e-34  Score=236.52  Aligned_cols=155  Identities=25%  Similarity=0.286  Sum_probs=127.3

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+.+|++|+|.+++         ++.+||+||++.  +.+..++.+++..   ..+.+    ..++.++++.+|+++
T Consensus        49 ~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~  126 (353)
T TIGR03265        49 IIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA--LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG  126 (353)
T ss_pred             HHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc
Confidence            68999999999998764         356999999974  4444555555432   12222    245788999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|+++||||||++||+.++.++.+.|++    .+.|+|+||||++++..+||++
T Consensus       127 ~~~-~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i  205 (353)
T TIGR03265       127 SER-KYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRI  205 (353)
T ss_pred             hhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence            665 58999999999999999999999999999999999999999999988865    3789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      ++|++|+++. .++.+++.
T Consensus       206 ~vl~~G~i~~-~g~~~~~~  223 (353)
T TIGR03265       206 VVMNHGVIEQ-VGTPQEIY  223 (353)
T ss_pred             EEEECCEEEE-EcCHHHHH
Confidence            9999999976 45554443

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=9.6e-34  Score=236.53  Aligned_cols=154  Identities=25%  Similarity=0.329  Sum_probs=126.5

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      .|+|+++|++|+|.+++               ++.+||+||++.  +.+..|+.+++..   ..+..    .+++.++++
T Consensus        38 ~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~--l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~  115 (363)
T TIGR01186        38 MLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA--LFPHMTILQNTSLGPELLGWPEQERKEKALELLK  115 (363)
T ss_pred             HHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc--CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            58999999999998754               357999999874  4455566655432   12222    245778899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|++...+ +++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.+.+.    +.|||+||||++++.
T Consensus       116 ~vgL~~~~~-~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~  194 (363)
T TIGR01186       116 LVGLEEYEH-RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAI  194 (363)
T ss_pred             hcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999986665 589999999999999999999999999999999999999999999988643    689999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||+|++|++|+++. .++++++
T Consensus       195 ~~~drI~vl~~G~iv~-~g~~~ei  217 (363)
T TIGR01186       195 RIGDRIVIMKAGEIVQ-VGTPDEI  217 (363)
T ss_pred             HhCCEEEEEeCCEEEe-eCCHHHH
Confidence            9999999999999975 4554443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-33  Score=235.56  Aligned_cols=154  Identities=24%  Similarity=0.340  Sum_probs=127.4

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+.+|++|+|.+++         ++++||+||++.  +.+..|+.+++..   ..+..    .+++.++++.+|+..
T Consensus        51 ~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~--lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~  128 (351)
T PRK11432         51 LVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG  128 (351)
T ss_pred             HHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--cCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch
Confidence            58999999999998764         357999999974  4455566555432   12222    245778999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|+++||||||++||+..+.++.+.|++    .+.|+|+||||.+++..+||++
T Consensus       129 ~~~-r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i  207 (351)
T PRK11432        129 FED-RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTV  207 (351)
T ss_pred             hhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence            665 68999999999999999999999999999999999999999999988864    3789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|++.. .++++++
T Consensus       208 ~vm~~G~i~~-~g~~~~~  224 (351)
T PRK11432        208 IVMNKGKIMQ-IGSPQEL  224 (351)
T ss_pred             EEEECCEEEE-EcCHHHH
Confidence            9999999976 4555544

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.9e-33  Score=222.29  Aligned_cols=153  Identities=28%  Similarity=0.330  Sum_probs=123.9

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c-CCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F-NLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~-~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++              +..+||+||++.  +....++.+++...   . ...    .+++.++++
T Consensus        45 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~  122 (235)
T cd03261          45 LIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA--LFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLE  122 (235)
T ss_pred             HHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc--cCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence            58999999999998653              235999999874  33445666554321   1 122    234677899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+....+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++.    +.|||+||||++++.
T Consensus       123 ~~~l~~~~~-~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~  201 (235)
T cd03261         123 AVGLRGAED-LYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF  201 (235)
T ss_pred             HcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence            999976654 589999999999999999999999999999999999999999999998763    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      .+||++++|++|++.. .++.++
T Consensus       202 ~~~d~v~~l~~G~i~~-~g~~~~  223 (235)
T cd03261         202 AIADRIAVLYDGKIVA-EGTPEE  223 (235)
T ss_pred             HhcCEEEEEECCeEEE-ecCHHH
Confidence            9999999999999864 555443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=2.2e-33  Score=234.58  Aligned_cols=155  Identities=19%  Similarity=0.250  Sum_probs=127.2

Q ss_pred             cccCcccCCc--eeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQ--GELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~--G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l   63 (184)
                      +|+|+.+|++  |+|.+++         ++.|||+||++.  +.+..|+.+++..   ..+.+    ..++.++++.+|+
T Consensus        50 ~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL  127 (362)
T TIGR03258        50 AIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL  127 (362)
T ss_pred             HHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            5899999999  9998754         346999999974  4455566655432   22222    2457788999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----c-CcEEEEEecCHHHHHhhc
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----Y-KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~-~~tiiivsHd~~~~~~~~  138 (184)
                      ++..+ +++.+|||||||||+|||||+.+|+++||||||++||+..+.++.+.|.+    . +.|+|+||||++++..+|
T Consensus       128 ~~~~~-~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~  206 (362)
T TIGR03258       128 GDAAA-HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLA  206 (362)
T ss_pred             Cchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhC
Confidence            87665 58999999999999999999999999999999999999999999988864    2 679999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |++++|++|+++. .++++++.
T Consensus       207 dri~vl~~G~i~~-~g~~~~~~  227 (362)
T TIGR03258       207 DKAGIMKDGRLAA-HGEPQALY  227 (362)
T ss_pred             CEEEEEECCEEEE-EcCHHHHH
Confidence            9999999999975 55555443

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=2e-33  Score=233.24  Aligned_cols=155  Identities=26%  Similarity=0.314  Sum_probs=126.9

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          +..+||+||++.  +....++.+++.   ..++..    .+++.++++.+++.
T Consensus        86 ~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~  163 (340)
T PRK13536         86 MILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN--LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE  163 (340)
T ss_pred             HHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCcc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            58999999999998754          346999999874  334455555443   222322    23456789999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      +..+ +++++||||||||++||+||+++|+++||||||+|||+.++.++++.|.++   +.|||++||++++++.+||++
T Consensus       164 ~~~~-~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i  242 (340)
T PRK13536        164 SKAD-ARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL  242 (340)
T ss_pred             hhhC-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence            6665 589999999999999999999999999999999999999999999999764   689999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      ++|++|+++. .++.+++.
T Consensus       243 ~il~~G~i~~-~g~~~~l~  260 (340)
T PRK13536        243 CVLEAGRKIA-EGRPHALI  260 (340)
T ss_pred             EEEECCEEEE-EcCHHHHH
Confidence            9999999974 56665543

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=2.8e-33  Score=234.84  Aligned_cols=154  Identities=23%  Similarity=0.295  Sum_probs=127.1

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         ++.+||+||++.  +.+..++.+++..   ..+.+    .+++.++++.+|+++
T Consensus        59 ~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~  136 (375)
T PRK09452         59 LIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYA--LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE  136 (375)
T ss_pred             HHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch
Confidence            68999999999998764         356999999974  4555666665532   12222    235678899999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|++    .+.|+|+||||.+++..+||++
T Consensus       137 ~~~-~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri  215 (375)
T PRK09452        137 FAQ-RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI  215 (375)
T ss_pred             hhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence            665 58999999999999999999999999999999999999999999988865    3789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|++.. .++++++
T Consensus       216 ~vl~~G~i~~-~g~~~~i  232 (375)
T PRK09452        216 VVMRDGRIEQ-DGTPREI  232 (375)
T ss_pred             EEEECCEEEE-EcCHHHH
Confidence            9999999976 4555444

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.5e-33  Score=218.76  Aligned_cols=146  Identities=27%  Similarity=0.354  Sum_probs=120.5

Q ss_pred             cccCcccCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+.+|++|+|.+++        ++.+||+||++...+ ...++.+++...   ......++.++++.+|+.+..+ +
T Consensus        45 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~  122 (205)
T cd03226          45 ILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-R  122 (205)
T ss_pred             HHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-C
Confidence            58999999999998764        236999999863111 133555554321   1222356788999999986664 5


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      ++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++.   +.|||++|||++++..+||++++|++|
T Consensus       123 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G  202 (205)
T cd03226         123 HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG  202 (205)
T ss_pred             CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence            89999999999999999999999999999999999999999999999765   679999999999999999999999999


Q ss_pred             eE
Q psy11928        148 TI  149 (184)
Q Consensus       148 ~i  149 (184)
                      ++
T Consensus       203 ~i  204 (205)
T cd03226         203 AI  204 (205)
T ss_pred             EE
Confidence            86

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1.2e-33  Score=220.87  Aligned_cols=145  Identities=27%  Similarity=0.421  Sum_probs=119.4

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++              ++.++|+||++.  +....++.+++..   ..+..    .+++.++++.
T Consensus        48 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~  125 (216)
T TIGR00960        48 LILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHR--LLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEK  125 (216)
T ss_pred             HHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcc--ccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            58999999999998753              136999999874  3344455555432   11221    2457788999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~  137 (184)
                      +|+.+..+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+.   +.|||+||||++++..+
T Consensus       126 ~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~  204 (216)
T TIGR00960       126 VGLEGKAH-ALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY  204 (216)
T ss_pred             cCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            99986654 589999999999999999999999999999999999999999999998765   67999999999999999


Q ss_pred             cCeEEEEeCCeE
Q psy11928        138 ECTLWVIENQTI  149 (184)
Q Consensus       138 ~~~i~~l~~g~i  149 (184)
                      ||++++|++|++
T Consensus       205 ~d~i~~l~~G~i  216 (216)
T TIGR00960       205 RHRTLTLSRGRL  216 (216)
T ss_pred             CCEEEEEeCCcC
Confidence            999999999864

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-33  Score=234.48  Aligned_cols=154  Identities=23%  Similarity=0.273  Sum_probs=125.6

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+.+|++|+|.+++         ++.+||+||++.  +.+..|+.+++...   .+..    .+++.++++.+++.+
T Consensus        64 ~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~  141 (377)
T PRK11607         64 MLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE  141 (377)
T ss_pred             HHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence            58999999999998764         346999999974  44555666555321   2222    245678899999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.+.    +.+.|+|+||||++++..+||++
T Consensus       142 ~~~-~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri  220 (377)
T PRK11607        142 FAK-RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI  220 (377)
T ss_pred             hhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence            665 5899999999999999999999999999999999999999988876654    45789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|+++. .++++++
T Consensus       221 ~vl~~G~i~~-~g~~~~~  237 (377)
T PRK11607        221 AIMNRGKFVQ-IGEPEEI  237 (377)
T ss_pred             EEEeCCEEEE-EcCHHHH
Confidence            9999999976 4555443

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.7e-33  Score=240.10  Aligned_cols=152  Identities=24%  Similarity=0.273  Sum_probs=129.9

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c-CC----CHHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F-NL----PYEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~-~~----~~~~~~~~l~~   60 (184)
                      +|+|+.+|++|+|.+++             ++++-++||+|...|++..|+.+.+...   + ..    .++++.++++.
T Consensus       336 ~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~  415 (539)
T COG1123         336 ILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLEL  415 (539)
T ss_pred             HHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHH
Confidence            68999999999998754             3479999999987788888887665432   1 11    12357788999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~  136 (184)
                      +|+.....+++|.+||||||||++|||||+.+|+++++|||||.||+..+..+.++|++    ++.|.|+||||+.+++.
T Consensus       416 VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~  495 (539)
T COG1123         416 VGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY  495 (539)
T ss_pred             cCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh
Confidence            99987544579999999999999999999999999999999999999999999998864    57899999999999999


Q ss_pred             hcCeEEEEeCCeEEEec
Q psy11928        137 TECTLWVIENQTIEEID  153 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~  153 (184)
                      +||||++|.+|++++.+
T Consensus       496 i~drv~vm~~G~iVE~G  512 (539)
T COG1123         496 IADRVAVMYDGRIVEEG  512 (539)
T ss_pred             hCceEEEEECCeEEEeC
Confidence            99999999999998843

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=3e-33  Score=218.15  Aligned_cols=147  Identities=29%  Similarity=0.360  Sum_probs=120.8

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         +..++|+||++.  +....++.+++..   ..+..    .+++.++++.+|+..
T Consensus        45 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  122 (213)
T cd03259          45 LIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG  122 (213)
T ss_pred             HHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence            58999999999998753         236999999874  3334455555432   11121    234678899999986


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+.    +.|||++|||++++..+||++
T Consensus       123 ~~~-~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v  201 (213)
T cd03259         123 LLN-RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRI  201 (213)
T ss_pred             hhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEE
Confidence            654 589999999999999999999999999999999999999999999999753    679999999999999999999


Q ss_pred             EEEeCCeEEE
Q psy11928        142 WVIENQTIEE  151 (184)
Q Consensus       142 ~~l~~g~i~~  151 (184)
                      ++|++|++..
T Consensus       202 ~~l~~G~i~~  211 (213)
T cd03259         202 AVMNEGRIVQ  211 (213)
T ss_pred             EEEECCEEEe
Confidence            9999999864

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=3.1e-33  Score=231.39  Aligned_cols=150  Identities=20%  Similarity=0.259  Sum_probs=122.1

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hc--CCCH----HHHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF--NLPY----EKARKQL   58 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~--~~~~----~~~~~~l   58 (184)
                      .|+|+++|++|+|.+++              +..++|+||++...+.+..++.+++..   .+  ..+.    +++.+++
T Consensus        66 ~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l  145 (331)
T PRK15079         66 AIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMM  145 (331)
T ss_pred             HHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            58999999999998653              246999999974234455566555432   11  2232    3467789


Q ss_pred             hhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHH
Q psy11928         59 GTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLI  134 (184)
Q Consensus        59 ~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~  134 (184)
                      +.+|+.....++++.+|||||+|||+|||||+.+|++||+||||++||+.++.++.++|++.    +.|+|+||||++++
T Consensus       146 ~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~  225 (331)
T PRK15079        146 LKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV  225 (331)
T ss_pred             HHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            99999543334689999999999999999999999999999999999999999999988653    67999999999999


Q ss_pred             HhhcCeEEEEeCCeEEE
Q psy11928        135 RDTECTLWVIENQTIEE  151 (184)
Q Consensus       135 ~~~~~~i~~l~~g~i~~  151 (184)
                      ..+||++++|.+|++++
T Consensus       226 ~~~~dri~vl~~G~ive  242 (331)
T PRK15079        226 KHISDRVLVMYLGHAVE  242 (331)
T ss_pred             HHhCCEEEEEECCEEEE
Confidence            99999999999999976

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.9e-34  Score=225.61  Aligned_cols=154  Identities=22%  Similarity=0.321  Sum_probs=127.0

Q ss_pred             CcccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH-hcCCCHHHHHHHHhhCCCC
Q psy11928          1 MYAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR-LFNLPYEKARKQLGTFGLA   64 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~   64 (184)
                      +.|+|+.+|++|.|.+++               +++||||||+..  +++.+++..++.. .+........++.+.+|++
T Consensus        42 n~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR--LFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~  119 (352)
T COG4148          42 NMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR--LFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIE  119 (352)
T ss_pred             HHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc--cccceEEecchhhhhcccchHhHHHHHHHhCcH
Confidence            368999999999998653               568999999974  4444444433321 1222356788899999999


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~  140 (184)
                      +.++ ++|..|||||||||+|+|||+..|++||||||.++||...+.+++.++.++    +..|++|||.++++.+++|+
T Consensus       120 hLL~-R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~  198 (352)
T COG4148         120 HLLD-RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR  198 (352)
T ss_pred             HHHh-hCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhhe
Confidence            7775 689999999999999999999999999999999999999999999998654    57899999999999999999


Q ss_pred             EEEEeCCeEEEecCChhH
Q psy11928        141 LWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       141 i~~l~~g~i~~~~~~~~~  158 (184)
                      +++|++|++.. .|..++
T Consensus       199 vV~le~GkV~A-~g~~e~  215 (352)
T COG4148         199 VVVLENGKVKA-SGPLEE  215 (352)
T ss_pred             EEEecCCeEEe-cCcHHH
Confidence            99999999976 444433

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=3.7e-33  Score=232.69  Aligned_cols=154  Identities=25%  Similarity=0.262  Sum_probs=126.1

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhc-------CCC----HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-------NLP----YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-------~~~----~~~~~~~l~~~   61 (184)
                      +|+|+++|++|+|.+++         ++.+||+||++.  +.+..++.+++....       ..+    .+++.++++.+
T Consensus        47 ~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~--l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  124 (353)
T PRK10851         47 IIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA--LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV  124 (353)
T ss_pred             HHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcc--cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHc
Confidence            58999999999998754         246999999974  444555655543211       122    24577889999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~  137 (184)
                      ++++..+ +++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|++.    +.|+|+||||++++..+
T Consensus       125 ~L~~~~~-~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~  203 (353)
T PRK10851        125 QLAHLAD-RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEV  203 (353)
T ss_pred             CCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            9987665 589999999999999999999999999999999999999999998888653    67999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|+++. .++.+++
T Consensus       204 ~Dri~vl~~G~i~~-~g~~~~i  224 (353)
T PRK10851        204 ADRVVVMSQGNIEQ-AGTPDQV  224 (353)
T ss_pred             CCEEEEEECCEEEE-EcCHHHH
Confidence            99999999999975 4555444

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-33  Score=233.00  Aligned_cols=154  Identities=23%  Similarity=0.217  Sum_probs=125.5

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         ++.+||+||++.  +.+..|+.+++...   .+..    .+++.++++.+|++.
T Consensus        48 ~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~  125 (369)
T PRK11000         48 MIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYA--LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH  125 (369)
T ss_pred             HHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcc--cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence            68999999999998754         246999999874  44455665554321   1222    245778899999986


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++.    +.|+|+||||++++..+||++
T Consensus       126 ~~~-~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i  204 (369)
T PRK11000        126 LLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI  204 (369)
T ss_pred             hhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEE
Confidence            654 589999999999999999999999999999999999999999998888653    679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|++.. .++.+++
T Consensus       205 ~vl~~G~i~~-~g~~~~i  221 (369)
T PRK11000        205 VVLDAGRVAQ-VGKPLEL  221 (369)
T ss_pred             EEEECCEEEE-EcCHHHH
Confidence            9999999975 4555444

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.1e-33  Score=229.80  Aligned_cols=151  Identities=23%  Similarity=0.282  Sum_probs=123.4

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---h-cCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---L-FNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~-~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++              +..|||+||++...+.+..++.+.+..   . ....    .+++.++++
T Consensus        60 ~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~  139 (327)
T PRK11308         60 LLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMA  139 (327)
T ss_pred             HHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            58899999999998653              246999999974345555666544321   1 1222    245778999


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+.....++++++|||||+|||+|||||+.+|++||+||||++||+.++.+++++|.+.    +.|+|+||||+..+.
T Consensus       140 ~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~  219 (327)
T PRK11308        140 KVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVE  219 (327)
T ss_pred             HCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            9999643334689999999999999999999999999999999999999999999988653    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEe
Q psy11928        136 DTECTLWVIENQTIEEI  152 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~  152 (184)
                      .+||++++|.+|++++.
T Consensus       220 ~~adrv~vm~~G~ive~  236 (327)
T PRK11308        220 HIADEVMVMYLGRCVEK  236 (327)
T ss_pred             HhCCEEEEEECCEEEEE
Confidence            99999999999999874

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=5.9e-33  Score=227.40  Aligned_cols=154  Identities=25%  Similarity=0.310  Sum_probs=125.2

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          +..+||+||++.  +....++.+++..   .++...    +++.++++.+++.
T Consensus        49 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~  126 (303)
T TIGR01288        49 MLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDN--LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE  126 (303)
T ss_pred             HHhCCCCCCceEEEECCEECcccHHHHhhcEEEEecccc--CCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh
Confidence            58999999999998753          346999999874  3344555555431   222222    3456789999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      +..+ +++++||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++   +.|||++|||++++..+||++
T Consensus       127 ~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i  205 (303)
T TIGR01288       127 SKAD-VRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL  205 (303)
T ss_pred             hHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence            6554 589999999999999999999999999999999999999999999999765   679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|+++. .++.++.
T Consensus       206 ~~l~~G~i~~-~g~~~~~  222 (303)
T TIGR01288       206 CVLESGRKIA-EGRPHAL  222 (303)
T ss_pred             EEEECCEEEE-EcCHHHH
Confidence            9999999864 5555444

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=6.2e-33  Score=227.07  Aligned_cols=155  Identities=25%  Similarity=0.405  Sum_probs=128.4

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          +..+||+||++.  +....++.+++..   .++..    .+++.++++.+|+.
T Consensus        47 ~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~  124 (301)
T TIGR03522        47 IITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR  124 (301)
T ss_pred             HHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            58999999999998754          246999999874  4445566665432   22322    24577889999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      +..+ ++++.||||||||++||+||+.+|+++||||||+|||+.+++++++.++++  +.|||++||+++++..+||+++
T Consensus       125 ~~~~-~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~  203 (301)
T TIGR03522       125 PEQH-KKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVI  203 (301)
T ss_pred             hHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEE
Confidence            7665 589999999999999999999999999999999999999999999999876  5799999999999999999999


Q ss_pred             EEeCCeEEEecCChhHHH
Q psy11928        143 VIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       143 ~l~~g~i~~~~~~~~~~~  160 (184)
                      ++++|++.. .++.+++.
T Consensus       204 ~l~~G~i~~-~g~~~~~~  220 (301)
T TIGR03522       204 IINKGKIVA-DKKLDELS  220 (301)
T ss_pred             EEECCEEEE-eCCHHHHH
Confidence            999999974 66666553

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.7e-33  Score=223.22  Aligned_cols=168  Identities=23%  Similarity=0.249  Sum_probs=131.5

Q ss_pred             cccCccc-C----CceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHH----HHhcCC-C----HH
Q psy11928          2 YAHCDLQ-P----QQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYL----QRLFNL-P----YE   52 (184)
Q Consensus         2 ~~~G~~~-p----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~----~~~~~~-~----~~   52 (184)
                      .|.|+++ |    .+|+|.+++               .+.|+++||+|...|++..++..-+    ....+. .    .+
T Consensus        50 aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~  129 (316)
T COG0444          50 AIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE  129 (316)
T ss_pred             HHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHH
Confidence            3567776 3    568887643               3479999999875666666654332    222222 1    24


Q ss_pred             HHHHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEE
Q psy11928         53 KARKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVII  126 (184)
Q Consensus        53 ~~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiii  126 (184)
                      ++.++|+.+|+.+.  ..+.+|.+|||||+|||.||.|++.+|++||.||||++||+..+.+++++|++    .+.|+|+
T Consensus       130 ~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiil  209 (316)
T COG0444         130 RAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALIL  209 (316)
T ss_pred             HHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            67889999999853  33569999999999999999999999999999999999999999999998864    4789999


Q ss_pred             EecCHHHHHhhcCeEEEEeCCeEEEecC-------ChhHHHHHHHHHhhh
Q psy11928        127 VSHDERLIRDTECTLWVIENQTIEEIDG-------DFDDYRKELLEALGE  169 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l~~g~i~~~~~-------~~~~~~~~~~~~~~~  169 (184)
                      ||||+..+.++||||.||..|++++...       +.+.|.+.++..+..
T Consensus       210 ITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~  259 (316)
T COG0444         210 ITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPR  259 (316)
T ss_pred             EeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHHHHhCcc
Confidence            9999999999999999999999988432       335577776666543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=6.2e-33  Score=217.39  Aligned_cols=147  Identities=26%  Similarity=0.318  Sum_probs=121.3

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          +..++|+||++.  +....++.+++..   .++..    .+++.++++.+++.
T Consensus        45 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  122 (220)
T cd03265          45 MLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL  122 (220)
T ss_pred             HHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence            68999999999998754          246999999874  3344555554432   22222    23567889999997


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~  140 (184)
                      ...+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+.    +.|||++|||++++..+|++
T Consensus       123 ~~~~-~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~  201 (220)
T cd03265         123 EAAD-RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDR  201 (220)
T ss_pred             HHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            6554 589999999999999999999999999999999999999999999988653    67999999999999999999


Q ss_pred             EEEEeCCeEEE
Q psy11928        141 LWVIENQTIEE  151 (184)
Q Consensus       141 i~~l~~g~i~~  151 (184)
                      ++++++|++..
T Consensus       202 i~~l~~G~i~~  212 (220)
T cd03265         202 VAIIDHGRIIA  212 (220)
T ss_pred             EEEEeCCEEEE
Confidence            99999999975

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.1e-32  Score=217.85  Aligned_cols=153  Identities=29%  Similarity=0.346  Sum_probs=123.1

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-----------C---HH
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-----------P---YE   52 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-----------~---~~   52 (184)
                      +|+|+++|++|+|.+++            +..++|+||++.  +....++.+++...   ...           .   .+
T Consensus        45 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (236)
T cd03219          45 LISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPR--LFPELTVLENVMVAAQARTGSGLLLARARREEREARE  122 (236)
T ss_pred             HHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccc--cccCCCHHHHHHHHHhhccccccccccccccHHHHHH
Confidence            58999999999998653            235999999874  34445555554321   110           1   23


Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH  129 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH  129 (184)
                      ++.++++.+|++...+ +++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.|.+.   +.|||+|||
T Consensus       123 ~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH  201 (236)
T cd03219         123 RAEELLERVGLADLAD-RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEH  201 (236)
T ss_pred             HHHHHHHHcCccchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence            4677899999986554 589999999999999999999999999999999999999999999998754   579999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      |++++..+||+++++++|++.. .++.++
T Consensus       202 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~  229 (236)
T cd03219         202 DMDVVMSLADRVTVLDQGRVIA-EGTPDE  229 (236)
T ss_pred             CHHHHHHhCCEEEEEeCCEEEe-ecCHHH
Confidence            9999999999999999999864 455443

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=1e-32  Score=218.62  Aligned_cols=155  Identities=26%  Similarity=0.324  Sum_probs=124.0

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh-----------cC-C---CHH
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-----------FN-L---PYE   52 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-----------~~-~---~~~   52 (184)
                      +|+|+++|++|+|.+++              +..++|+||++.  +....++.+++...           .+ .   ..+
T Consensus        46 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~  123 (241)
T cd03256          46 CLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQ  123 (241)
T ss_pred             HHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCc--ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHH
Confidence            58999999999998653              235999999874  33344555544311           01 1   123


Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEe
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS  128 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivs  128 (184)
                      ++.++++.+++....+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++|
T Consensus       124 ~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t  202 (241)
T cd03256         124 RALAALERVGLLDKAY-QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL  202 (241)
T ss_pred             HHHHHHHHcCChhhhC-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            5677899999976554 589999999999999999999999999999999999999999999988753    67999999


Q ss_pred             cCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928        129 HDERLIRDTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||++++..+||++++|++|+++. .++.+++.
T Consensus       203 H~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~  233 (241)
T cd03256         203 HQVDLAREYADRIVGLKDGRIVF-DGPPAELT  233 (241)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEe-ecCHHHhh
Confidence            99999999999999999999875 55655543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=1.1e-32  Score=215.99  Aligned_cols=147  Identities=27%  Similarity=0.305  Sum_probs=121.0

Q ss_pred             cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~~   68 (184)
                      +|+|+.+|++|+|.+++      +..++|+||++.  +....++.+++..   ..+..    .+++.++++.+|+....+
T Consensus        49 ~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  126 (220)
T cd03293          49 IIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDA--LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN  126 (220)
T ss_pred             HHhCCCCCCceEEEECCEECccccCcEEEEecccc--cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh
Confidence            58999999999998764      356999999874  3344555555432   11221    245678899999976554


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                       +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++.    +.|||+||||++++..+||++++|
T Consensus       127 -~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  205 (220)
T cd03293         127 -AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL  205 (220)
T ss_pred             -CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence             589999999999999999999999999999999999999999999998653    679999999999999999999999


Q ss_pred             e--CCeEEE
Q psy11928        145 E--NQTIEE  151 (184)
Q Consensus       145 ~--~g~i~~  151 (184)
                      +  +|++++
T Consensus       206 ~~~~G~i~~  214 (220)
T cd03293         206 SARPGRIVA  214 (220)
T ss_pred             ECCCCEEEE
Confidence            9  799865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.7e-33  Score=245.67  Aligned_cols=160  Identities=37%  Similarity=0.675  Sum_probs=134.9

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccccccccCCChhHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK   80 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k   80 (184)
                      +|+|+++|++|+|.+....++||++|++...+++..++.+.+.... .....++.++++.|++.....++++++||||||
T Consensus       357 ~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGek  436 (638)
T PRK10636        357 LLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEK  436 (638)
T ss_pred             HHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHH
Confidence            6899999999999987667899999975333555566655543221 122456788999999964333468999999999


Q ss_pred             HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928         81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus        81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |||+||++++.+|++|||||||||||+.++..+.+.|.++++|||+||||++++..+||+++++++|+++.+.|++++|.
T Consensus       437 qRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        437 ARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            99999999999999999999999999999999999999998899999999999999999999999999977789988885


Q ss_pred             H
Q psy11928        161 K  161 (184)
Q Consensus       161 ~  161 (184)
                      +
T Consensus       517 ~  517 (638)
T PRK10636        517 Q  517 (638)
T ss_pred             H
Confidence            4

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-32  Score=229.09  Aligned_cols=153  Identities=24%  Similarity=0.356  Sum_probs=124.7

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++              ++.+||+||++.  +....++.+++..   ..+..    .+++.++++.
T Consensus        50 ~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~  127 (343)
T PRK11153         50 CINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLEL  127 (343)
T ss_pred             HHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            58999999999998753              246999999874  3344555555432   22222    2356788999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~  136 (184)
                      +|+.+..+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++.    +.|||++|||++++..
T Consensus       128 ~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~  206 (343)
T PRK11153        128 VGLSDKAD-RYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKR  206 (343)
T ss_pred             cCCchhhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            99986654 589999999999999999999999999999999999999999999998754    6799999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      +||++++|++|+++. .++.++
T Consensus       207 ~~d~v~~l~~G~i~~-~g~~~~  227 (343)
T PRK11153        207 ICDRVAVIDAGRLVE-QGTVSE  227 (343)
T ss_pred             hCCEEEEEECCEEEE-EcCHHH
Confidence            999999999999975 454443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=238.79  Aligned_cols=162  Identities=31%  Similarity=0.549  Sum_probs=135.3

Q ss_pred             CcccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh--------------c-------------------
Q psy11928          1 MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL--------------F-------------------   47 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~--------------~-------------------   47 (184)
                      ++|+|...|++|+|......++||++|++.  +....++.+.+...              +                   
T Consensus        47 kilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (530)
T COG0488          47 KILAGELEPDSGEVTRPKGLRVGYLSQEPP--LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLE  124 (530)
T ss_pred             HHHcCCCcCCCCeEeecCCceEEEeCCCCC--cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            378999999999999888889999999974  33344444332110              0                   


Q ss_pred             ---CC-CHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcE
Q psy11928         48 ---NL-PYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG  123 (184)
Q Consensus        48 ---~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~t  123 (184)
                         .. .+.++..++..+|+...  .+++++||||||.||+||+||+.+||+||||||||+||..++.||.++|.++.+|
T Consensus       125 ~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gt  202 (530)
T COG0488         125 ELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGT  202 (530)
T ss_pred             hhcccchHHHHHHHHhcCCCCcc--cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCc
Confidence               00 02456678888999865  3589999999999999999999999999999999999999999999999998779


Q ss_pred             EEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHHHHHHH
Q psy11928        124 VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEA  166 (184)
Q Consensus       124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~~~~~  166 (184)
                      +|+||||.+|+..+|++|+.++.|++..|.|+++.|.+...+.
T Consensus       203 viiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~  245 (530)
T COG0488         203 VIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAER  245 (530)
T ss_pred             EEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887755433

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=2.9e-33  Score=209.22  Aligned_cols=154  Identities=25%  Similarity=0.283  Sum_probs=128.2

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh--cC--C---CHHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FN--L---PYEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~--~---~~~~~~~~l~~~~l~~   65 (184)
                      .++|...|.+|+|.+++         .+.++++||+++  +....|+.+++...  .+  .   .++++..++.++|+..
T Consensus        44 LIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN--LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~  121 (231)
T COG3840          44 LIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN--LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAG  121 (231)
T ss_pred             HHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccc--cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhh
Confidence            57999999999998764         467999999974  55555555554421  11  1   2466888999999998


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      +.+ +.|.+|||||||||+|||+|+.+-+|++|||||++|||.-+.++..++.+.    +.|++||||.++++.++++++
T Consensus       122 ~~~-RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~  200 (231)
T COG3840         122 FLK-RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRV  200 (231)
T ss_pred             Hhh-hCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhce
Confidence            876 589999999999999999999999999999999999999999999888653    679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      +++++|+|.. .++..++
T Consensus       201 ~fl~~Gri~~-~g~~~~~  217 (231)
T COG3840         201 VFLDNGRIAA-QGSTQEL  217 (231)
T ss_pred             EEEeCCEEEe-eccHHHH
Confidence            9999999964 5555443

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=7.8e-33  Score=215.75  Aligned_cols=147  Identities=24%  Similarity=0.341  Sum_probs=118.9

Q ss_pred             cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHHhcC--------C---CHHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN--------L---PYEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~--------~---~~~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++      +..++|+||++........++.+++.....        .   ..+++.++++.+++.
T Consensus        44 ~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  123 (213)
T cd03235          44 AILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS  123 (213)
T ss_pred             HHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH
Confidence            68999999999999875      356999999874111122466666542110        1   123567889999997


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ...+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++   +.|||+||||++++..+||++
T Consensus       124 ~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i  202 (213)
T cd03235         124 ELAD-RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRV  202 (213)
T ss_pred             HHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence            6554 589999999999999999999999999999999999999999999998764   579999999999999999999


Q ss_pred             EEEeCCeE
Q psy11928        142 WVIENQTI  149 (184)
Q Consensus       142 ~~l~~g~i  149 (184)
                      ++|++|.+
T Consensus       203 ~~l~~~~~  210 (213)
T cd03235         203 LLLNRTVV  210 (213)
T ss_pred             EEEcCcEe
Confidence            99988743

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-32  Score=225.93  Aligned_cols=155  Identities=27%  Similarity=0.351  Sum_probs=124.2

Q ss_pred             cccCcccCCceeEEecC-----------------------------------CeEEEEEecCCCCCCCccCCHHHHHHH-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR-   45 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~-   45 (184)
                      .|+|+++|++|+|.+++                                   ++.|||+||++...+. ..++.+++.. 
T Consensus        52 ~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~  130 (305)
T PRK13651         52 HLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFG  130 (305)
T ss_pred             HHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhh
Confidence            58999999999997742                                   2358999998632232 3466665532 


Q ss_pred             --hcCCCH----HHHHHHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q psy11928         46 --LFNLPY----EKARKQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN  118 (184)
Q Consensus        46 --~~~~~~----~~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~  118 (184)
                        ..+...    +++.++++.+|+. ... ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.
T Consensus       131 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~  209 (305)
T PRK13651        131 PVSMGVSKEEAKKRAAKYIELVGLDESYL-QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD  209 (305)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCChhhh-hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence              122222    3567889999996 444 46899999999999999999999999999999999999999999999886


Q ss_pred             hc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        119 EY---KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       119 ~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +.   +.|||+||||++++..+||++++|++|+++. .++.+++
T Consensus       210 ~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~-~g~~~~~  252 (305)
T PRK13651        210 NLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK-DGDTYDI  252 (305)
T ss_pred             HHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            54   6899999999999999999999999999875 4555443

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-32  Score=238.96  Aligned_cols=159  Identities=26%  Similarity=0.505  Sum_probs=133.1

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCC-cccccccccCCChh
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLA-GHAHTIKMKDLSGG   78 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG   78 (184)
                      +|+|+++|++|+|.++++..+||++|++...+....++.+++....  ....+++.++++.+|+. ... ++++++||||
T Consensus       364 ~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgG  442 (530)
T PRK15064        364 TLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-KKSVKVLSGG  442 (530)
T ss_pred             HHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-cCcccccCHH
Confidence            5899999999999998888899999986322334456666554321  12245678899999995 344 4689999999


Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928         79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus        79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      |||||+||||++.+|++|||||||+|||+.++..+.+.|.+++.|||+||||++++..+||+++++++|+++.+.+++.+
T Consensus       443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~  522 (530)
T PRK15064        443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEE  522 (530)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHH
Confidence            99999999999999999999999999999999999999999888999999999999999999999999998756777766


Q ss_pred             HHH
Q psy11928        159 YRK  161 (184)
Q Consensus       159 ~~~  161 (184)
                      +.+
T Consensus       523 ~~~  525 (530)
T PRK15064        523 YLR  525 (530)
T ss_pred             HHH
Confidence            543

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.6e-32  Score=226.76  Aligned_cols=154  Identities=23%  Similarity=0.266  Sum_probs=125.8

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+.+|++|+|.+++         ++.+||+||++.  +.+..++.+++..   ..+..    .+++.++++.+++..
T Consensus        15 ~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~   92 (325)
T TIGR01187        15 LLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEE   92 (325)
T ss_pred             HHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--ccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcc
Confidence            58999999999998754         246999999874  4445566655432   11222    235678899999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+.    +.|+|+||||++++..+||++
T Consensus        93 ~~~-~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i  171 (325)
T TIGR01187        93 FAD-RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI  171 (325)
T ss_pred             hhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence            665 589999999999999999999999999999999999999999999988653    679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|++.. .++.+++
T Consensus       172 ~vl~~G~i~~-~g~~~~~  188 (325)
T TIGR01187       172 AIMRKGKIAQ-IGTPEEI  188 (325)
T ss_pred             EEEECCEEEE-EcCHHHH
Confidence            9999999975 4555444

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=1.3e-32  Score=213.75  Aligned_cols=147  Identities=30%  Similarity=0.396  Sum_probs=122.9

Q ss_pred             cccCcccCCceeEEecCC---------eEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNHR---------LRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~---------~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .|+|+.+|++|+|.+++.         ..++|+||++.  +....++.+++...   +....+++.++++.+++....+ 
T Consensus        45 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-  121 (208)
T cd03268          45 IILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPG--FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-  121 (208)
T ss_pred             HHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-
Confidence            579999999999987642         36999999864  44455666654321   2234566788999999976554 


Q ss_pred             ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      +++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.+.+.   +.|+|++|||++++..+||++++|++
T Consensus       122 ~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~  201 (208)
T cd03268         122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINK  201 (208)
T ss_pred             hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence            589999999999999999999999999999999999999999999998754   67999999999999999999999999


Q ss_pred             CeEEE
Q psy11928        147 QTIEE  151 (184)
Q Consensus       147 g~i~~  151 (184)
                      |+++.
T Consensus       202 g~i~~  206 (208)
T cd03268         202 GKLIE  206 (208)
T ss_pred             CEEEe
Confidence            99864

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=9.2e-33  Score=215.07  Aligned_cols=147  Identities=26%  Similarity=0.358  Sum_probs=121.8

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~   64 (184)
                      .|+|+++|++|+|.+++          +..++|+||++.  +....++.+++..   ..+..    .+++.++++.+|+.
T Consensus        44 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  121 (211)
T cd03264          44 ILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG  121 (211)
T ss_pred             HHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH
Confidence            58999999999998764          346999999874  3344566555432   11222    23567789999997


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      ...+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.+.  +.|||++|||++++..+||+++
T Consensus       122 ~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~  200 (211)
T cd03264         122 DRAK-KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVA  200 (211)
T ss_pred             HHHh-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEE
Confidence            6554 589999999999999999999999999999999999999999999999865  5799999999999999999999


Q ss_pred             EEeCCeEEE
Q psy11928        143 VIENQTIEE  151 (184)
Q Consensus       143 ~l~~g~i~~  151 (184)
                      +|++|++..
T Consensus       201 ~l~~g~i~~  209 (211)
T cd03264         201 VLNKGKLVF  209 (211)
T ss_pred             EEECCEEEe
Confidence            999999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-32  Score=218.52  Aligned_cols=154  Identities=29%  Similarity=0.319  Sum_probs=123.5

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----------CC----CHH
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----------NL----PYE   52 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----------~~----~~~   52 (184)
                      +|+|+++|++|+|.+++              +..+||+||++.  +....++.+++....           +.    ..+
T Consensus        47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~  124 (243)
T TIGR02315        47 CINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYN--LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE  124 (243)
T ss_pred             HHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCc--ccccccHHHHHhhcccccccchhhhhccccHHHHH
Confidence            58999999999998653              235999999874  333445555543110           00    123


Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEe
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS  128 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivs  128 (184)
                      ++.++++.+|+....+ +++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|.+.    +.|||+||
T Consensus       125 ~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~t  203 (243)
T TIGR02315       125 RALSALERVGLADKAY-QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL  203 (243)
T ss_pred             HHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            5677899999976554 589999999999999999999999999999999999999999999998754    67999999


Q ss_pred             cCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        129 HDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++..+||++++|++|+++. .++.+++
T Consensus       204 H~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~  233 (243)
T TIGR02315       204 HQVDLAKKYADRIVGLKAGEIVF-DGAPSEL  233 (243)
T ss_pred             CCHHHHHHhcCeEEEEECCEEEe-cCCHHHh
Confidence            99999999999999999999875 5555544

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.9e-33  Score=206.82  Aligned_cols=148  Identities=30%  Similarity=0.298  Sum_probs=120.4

Q ss_pred             CcccCcccCCceeEEecC---------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcC----CCHHHHHHHHh
Q psy11928          1 MYAHCDLQPQQGELKKNH---------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFN----LPYEKARKQLG   59 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~----~~~~~~~~~l~   59 (184)
                      |+++|+..|++|+|++.+               .+++|||||...  ++++..+|+.-.+ ...+    .....+.++|+
T Consensus        54 ~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPl-eL~ge~~~~~~~~A~~lL~  132 (228)
T COG4181          54 AVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL-ELRGESSADSRAGAKALLE  132 (228)
T ss_pred             HHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchh-hhcCCccccHHHHHHHHHH
Confidence            578999999999998642               467999999764  4455444432211 1112    12356788999


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~  135 (184)
                      .+|+...... +|.+|||||||||+|||||+..|+||+.||||.+||..+-+.+.+++-    +.|.|+|+||||...+.
T Consensus       133 ~vGLg~Rl~H-yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~  211 (228)
T COG4181         133 AVGLGKRLTH-YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA  211 (228)
T ss_pred             HhCccccccc-CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH
Confidence            9999877764 899999999999999999999999999999999999999998888874    45789999999999998


Q ss_pred             hhcCeEEEEeCCeEEE
Q psy11928        136 DTECTLWVIENQTIEE  151 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~  151 (184)
                      + |+|++-|.+|++++
T Consensus       212 R-c~R~~r~~~G~l~~  226 (228)
T COG4181         212 R-CDRQLRLRSGRLVE  226 (228)
T ss_pred             h-hhheeeeecceecc
Confidence            6 89999999999853

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-32  Score=228.47  Aligned_cols=154  Identities=23%  Similarity=0.276  Sum_probs=126.4

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++               ++.+||+||++.  +.+..++.+++... .....+++.++++.+|+++
T Consensus        43 ~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~  120 (352)
T PRK11144         43 AISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR--LFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEP  120 (352)
T ss_pred             HHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcc--cCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCch
Confidence            58999999999997643               246999999874  44555666655422 1122456788999999986


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|++.    +.|+|+||||++++..+||++
T Consensus       121 ~~~-~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i  199 (352)
T PRK11144        121 LLD-RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRV  199 (352)
T ss_pred             hhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEE
Confidence            654 589999999999999999999999999999999999999999999888653    679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|++.. .++.+++
T Consensus       200 ~~l~~G~i~~-~g~~~~i  216 (352)
T PRK11144        200 VVLEQGKVKA-FGPLEEV  216 (352)
T ss_pred             EEEeCCEEEE-ecCHHHH
Confidence            9999999975 4555443

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=2.2e-32  Score=216.83  Aligned_cols=153  Identities=25%  Similarity=0.253  Sum_probs=123.0

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC----C----HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL----P----YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~----~----~~~~~~~l~~~   61 (184)
                      +|+|+++|++|+|.+++         +..++|++|++.  +....++.+++...   ...    .    .+++.++++.+
T Consensus        47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  124 (239)
T cd03296          47 LIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV  124 (239)
T ss_pred             HHhCCCCCCceEEEECCEECCcCCccccceEEEecCCc--ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHc
Confidence            58999999999998754         235999999874  33344555554321   111    1    13456789999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~  137 (184)
                      |++...+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+.    +.|||+||||++++..+
T Consensus       125 ~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~  203 (239)
T cd03296         125 QLDWLAD-RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEV  203 (239)
T ss_pred             CChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            9976554 589999999999999999999999999999999999999999999998753    67999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      ||++++|++|+++. .++.++
T Consensus       204 ~d~i~~l~~G~i~~-~~~~~~  223 (239)
T cd03296         204 ADRVVVMNKGRIEQ-VGTPDE  223 (239)
T ss_pred             CCEEEEEECCeEEE-ecCHHH
Confidence            99999999999875 455443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=1.4e-32  Score=214.13  Aligned_cols=147  Identities=25%  Similarity=0.287  Sum_probs=121.5

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhc----CC---CHHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLF----NL---PYEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~~---~~~~~~~~l~~~~l~~   65 (184)
                      +|+|+.+|++|+|.+++         ++.+||++|++.  +....++.+++....    ..   ..+++.++++.+|+..
T Consensus        43 ~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  120 (211)
T cd03298          43 LIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN--LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG  120 (211)
T ss_pred             HHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccc--cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH
Confidence            58999999999998754         235999999874  344456666653211    11   1245778899999986


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+.    +.|||++|||++++..+||++
T Consensus       121 ~~~-~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i  199 (211)
T cd03298         121 LEK-RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRV  199 (211)
T ss_pred             HHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEE
Confidence            554 589999999999999999999999999999999999999999999998753    679999999999999999999


Q ss_pred             EEEeCCeEEE
Q psy11928        142 WVIENQTIEE  151 (184)
Q Consensus       142 ~~l~~g~i~~  151 (184)
                      ++|++|+++.
T Consensus       200 ~~l~~G~i~~  209 (211)
T cd03298         200 VFLDNGRIAA  209 (211)
T ss_pred             EEEECCEEee
Confidence            9999999864

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=4.8e-32  Score=237.93  Aligned_cols=174  Identities=28%  Similarity=0.501  Sum_probs=139.9

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc---CC--CHHHHHHHHhhCCCCcccccccccCCC
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF---NL--PYEKARKQLGTFGLAGHAHTIKMKDLS   76 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS   76 (184)
                      +|+|+.+|++|+|.++....|||++|++. .+....++.+++....   ..  ...++.++++.+|+.....++++++||
T Consensus       367 ~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  445 (552)
T TIGR03719       367 MITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLS  445 (552)
T ss_pred             HHcCCCCCCCeEEEECCceEEEEEeCCcc-ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCC
Confidence            58999999999998865557999999852 2344556666554321   11  123456789999996433345899999


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeC-CeEEEecCC
Q psy11928         77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIEN-QTIEEIDGD  155 (184)
Q Consensus        77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~-g~i~~~~~~  155 (184)
                      |||||||+||||++.+|+++||||||+|||+.++..+.+.|.++++|||+||||++++..+||++++|++ |++..+.++
T Consensus       446 gGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~  525 (552)
T TIGR03719       446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGN  525 (552)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCC
Confidence            9999999999999999999999999999999999999999999878999999999999999999999987 588777889


Q ss_pred             hhHHHHHHHHHhhhhhcCchh
Q psy11928        156 FDDYRKELLEALGEVVNNPSI  176 (184)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~  176 (184)
                      +++|.+...+.+.+....++.
T Consensus       526 ~~~~~~~~~~~~~~~~~~~~~  546 (552)
T TIGR03719       526 YSEYEEDKKRRLGEDADQPHR  546 (552)
T ss_pred             HHHHHHHHHHHHHhhhhhhHh
Confidence            888877766666555554443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-32  Score=229.55  Aligned_cols=154  Identities=25%  Similarity=0.260  Sum_probs=126.2

Q ss_pred             cccCcccCCceeEEecCC-------------------eEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHH
Q psy11928          2 YAHCDLQPQQGELKKNHR-------------------LRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~-------------------~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~   55 (184)
                      .|+|+++|++|+|.+++.                   +.+||+||++.  +.+..|+.+++...   .+..    ..++.
T Consensus        69 ~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~--l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~  146 (382)
T TIGR03415        69 AVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA--LMPWLTVEENVAFGLEMQGMPEAERRKRVD  146 (382)
T ss_pred             HHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc--CCCCCcHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            589999999999987641                   36999999874  44455666554321   1222    24567


Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCH
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDE  131 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~  131 (184)
                      ++++.+|+....+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+    .+.|||+||||+
T Consensus       147 e~le~vgL~~~~~-~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl  225 (382)
T TIGR03415       147 EQLELVGLAQWAD-KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL  225 (382)
T ss_pred             HHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            8899999986665 58999999999999999999999999999999999999999999998864    368999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++.++||++++|++|+++. .++.+++
T Consensus       226 ~e~~~l~DrI~vl~~G~iv~-~g~~~ei  252 (382)
T TIGR03415       226 DEALKIGNRIAIMEGGRIIQ-HGTPEEI  252 (382)
T ss_pred             HHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence            99999999999999999976 4555444

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=2.1e-32  Score=213.60  Aligned_cols=147  Identities=25%  Similarity=0.242  Sum_probs=120.3

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHhcC--C---CHHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN--L---PYEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~--~---~~~~~~~~l~~~   61 (184)
                      +|+|+++|++|+|.+++               +..++|+||++.  +....++.+++.....  .   ..+++.++++.+
T Consensus        42 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~  119 (214)
T cd03297          42 CIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA--LFPHLNVRENLAFGLKRKRNREDRISVDELLDLL  119 (214)
T ss_pred             HHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCc--cCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHc
Confidence            58899999999997643               235999999874  3344566555432111  1   124577889999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~  137 (184)
                      |+....+ +++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.+.    +.|||++|||.+++..+
T Consensus       120 ~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~  198 (214)
T cd03297         120 GLDHLLN-RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYL  198 (214)
T ss_pred             CCHhHhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHh
Confidence            9976554 589999999999999999999999999999999999999999999988653    67999999999999999


Q ss_pred             cCeEEEEeCCeEEE
Q psy11928        138 ECTLWVIENQTIEE  151 (184)
Q Consensus       138 ~~~i~~l~~g~i~~  151 (184)
                      ||+++++++|+++.
T Consensus       199 ~d~i~~l~~G~i~~  212 (214)
T cd03297         199 ADRIVVMEDGRLQY  212 (214)
T ss_pred             cCEEEEEECCEEEe
Confidence            99999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=3.5e-32  Score=219.38  Aligned_cols=154  Identities=22%  Similarity=0.312  Sum_probs=124.1

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++               +..+||+||++.  +....++.+++..   ..+..    .+++.++++
T Consensus        69 ~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~  146 (269)
T cd03294          69 CINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALE  146 (269)
T ss_pred             HHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            68999999999998643               136999999874  3334455555432   11111    235678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+.+..+ +++.+||||||||++||||++.+|++|||||||+|||+.++..+.+.|.++    +.|||++|||++++.
T Consensus       147 ~~~l~~~~~-~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~  225 (269)
T cd03294         147 LVGLEGWEH-KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL  225 (269)
T ss_pred             HcCCHhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999986554 589999999999999999999999999999999999999999999988654    579999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||++++|++|++.. .++.+++
T Consensus       226 ~~~d~v~~l~~G~i~~-~g~~~~~  248 (269)
T cd03294         226 RLGDRIAIMKDGRLVQ-VGTPEEI  248 (269)
T ss_pred             HhcCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999975 4554444

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=1.7e-32  Score=214.53  Aligned_cols=147  Identities=22%  Similarity=0.330  Sum_probs=121.7

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          +..+||+||++.  +....++.+++..   .++..    .+++.++++.+|+.
T Consensus        50 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  127 (218)
T cd03266          50 MLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTG--LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME  127 (218)
T ss_pred             HHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcc--cCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence            68999999999998754          246999999873  3344556555432   12222    23567889999997


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      +..+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.++   +.|||+||||++++..+||++
T Consensus       128 ~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i  206 (218)
T cd03266         128 ELLD-RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRV  206 (218)
T ss_pred             HHHh-hhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEE
Confidence            6554 589999999999999999999999999999999999999999999999764   679999999999999999999


Q ss_pred             EEEeCCeEEE
Q psy11928        142 WVIENQTIEE  151 (184)
Q Consensus       142 ~~l~~g~i~~  151 (184)
                      ++|++|++..
T Consensus       207 ~~l~~G~i~~  216 (218)
T cd03266         207 VVLHRGRVVY  216 (218)
T ss_pred             EEEECCEEee
Confidence            9999999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-32  Score=222.60  Aligned_cols=156  Identities=26%  Similarity=0.309  Sum_probs=123.6

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~   59 (184)
                      +|+|+.+|++|+|.+++               ++.+||+||++...+. ..++.+++..   ..+.+.    +++.++++
T Consensus        52 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~  130 (290)
T PRK13634         52 HLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIE  130 (290)
T ss_pred             HHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            58999999999998754               1359999998732232 2355555432   122222    34677899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+.....++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.++++++    +.|||+||||++++.
T Consensus       131 ~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~  210 (290)
T PRK13634        131 LVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAA  210 (290)
T ss_pred             HCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            9999643334589999999999999999999999999999999999999999999988653    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||++++|++|+++. .++.+++
T Consensus       211 ~~~drv~~l~~G~i~~-~g~~~~~  233 (290)
T PRK13634        211 RYADQIVVMHKGTVFL-QGTPREI  233 (290)
T ss_pred             HhCCEEEEEECCEEEE-ECCHHHH
Confidence            9999999999999875 5555443

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1.7e-32  Score=214.46  Aligned_cols=144  Identities=30%  Similarity=0.410  Sum_probs=117.5

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++               ++.++|++|++.  +....++.+++..   ..+..    .+++.++++
T Consensus        49 ~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~  126 (218)
T cd03255          49 ILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN--LLPDLTALENVELPLLLAGVPKKERRERAEELLE  126 (218)
T ss_pred             HHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccc--cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence            58999999999998643               236999999874  3344455555432   11221    245678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|++...+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++.    +.|||+||||++++.
T Consensus       127 ~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  205 (218)
T cd03255         127 RVGLGDRLN-HYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE  205 (218)
T ss_pred             HcCCchhhh-cChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence            999986654 589999999999999999999999999999999999999999999998754    579999999999997


Q ss_pred             hhcCeEEEEeCCeE
Q psy11928        136 DTECTLWVIENQTI  149 (184)
Q Consensus       136 ~~~~~i~~l~~g~i  149 (184)
                       +||++++|++|++
T Consensus       206 -~~d~v~~l~~G~i  218 (218)
T cd03255         206 -YADRIIELRDGKI  218 (218)
T ss_pred             -hhcEEEEeeCCcC
Confidence             8999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-32  Score=218.33  Aligned_cols=147  Identities=27%  Similarity=0.263  Sum_probs=122.8

Q ss_pred             cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccccccccC
Q psy11928          2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHTIKMKD   74 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~   74 (184)
                      +|+|+++|++|+|.+++      +..++|++|++.  +....++.+++.... .....++.++++.+|+....+ +++.+
T Consensus        57 ~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~  133 (257)
T PRK11247         57 LLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR--LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-EWPAA  133 (257)
T ss_pred             HHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc--CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-CChhh
Confidence            68999999999998754      346999999874  444456766654321 112356778999999986654 58999


Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q psy11928         75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIE  150 (184)
Q Consensus        75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~  150 (184)
                      ||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+.    +.|||+||||++++..+||+++++++|+++
T Consensus       134 LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~  213 (257)
T PRK11247        134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG  213 (257)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999988653    689999999999999999999999999986


Q ss_pred             E
Q psy11928        151 E  151 (184)
Q Consensus       151 ~  151 (184)
                      .
T Consensus       214 ~  214 (257)
T PRK11247        214 L  214 (257)
T ss_pred             e
Confidence            4

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-32  Score=229.40  Aligned_cols=154  Identities=24%  Similarity=0.303  Sum_probs=125.1

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++               +..+||+||++.  +.+..|+.+++..   ..+..    .+++.++++
T Consensus        73 ~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~  150 (400)
T PRK10070         73 LLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--LMPHMTVLDNTAFGMELAGINAEERREKALDALR  150 (400)
T ss_pred             HHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            58999999999998753               136999999874  4445566655432   12222    245678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|++...+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+.    +.|||+||||++++.
T Consensus       151 ~~gL~~~~~-~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~  229 (400)
T PRK10070        151 QVGLENYAH-SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAM  229 (400)
T ss_pred             HcCCChhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence            999987665 589999999999999999999999999999999999999999999988653    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||++++|++|+++. .++.+++
T Consensus       230 ~~~Dri~vL~~G~i~~-~g~~~~l  252 (400)
T PRK10070        230 RIGDRIAIMQNGEVVQ-VGTPDEI  252 (400)
T ss_pred             HhCCEEEEEECCEEEe-cCCHHHH
Confidence            9999999999999975 4544443

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=2.6e-32  Score=212.39  Aligned_cols=147  Identities=24%  Similarity=0.357  Sum_probs=121.5

Q ss_pred             cccCcccCCceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCccc
Q psy11928          2 YAHCDLQPQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAGHA   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~   67 (184)
                      +|+|+.+|++|+|.+++       +..++|++|++.  +....++.+++..   ..+..    .+++.++++.+|++...
T Consensus        45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  122 (210)
T cd03269          45 MILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA  122 (210)
T ss_pred             HHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc--CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH
Confidence            68999999999998865       346999999874  3344455555432   12221    24567889999997655


Q ss_pred             ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      + +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+++.   +.|||++|||.+++..+||+++++
T Consensus       123 ~-~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  201 (210)
T cd03269         123 N-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLL  201 (210)
T ss_pred             h-CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEE
Confidence            4 589999999999999999999999999999999999999999999998764   579999999999999999999999


Q ss_pred             eCCeEEE
Q psy11928        145 ENQTIEE  151 (184)
Q Consensus       145 ~~g~i~~  151 (184)
                      ++|++..
T Consensus       202 ~~g~i~~  208 (210)
T cd03269         202 NKGRAVL  208 (210)
T ss_pred             eCCEEEe
Confidence            9999864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=2.5e-32  Score=212.78  Aligned_cols=147  Identities=24%  Similarity=0.285  Sum_probs=120.1

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         +..++|+||++.  +....++.+++..   ..+..    .+++.++++.+|+..
T Consensus        45 ~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  122 (213)
T cd03301          45 MIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA--LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH  122 (213)
T ss_pred             HHhCCCCCCceEEEECCEECCcCCcccceEEEEecChh--hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH
Confidence            68999999999998753         235999999874  3334455554432   11222    234667899999976


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++|||++++..+|+++
T Consensus       123 ~~~-~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i  201 (213)
T cd03301         123 LLD-RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI  201 (213)
T ss_pred             HHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence            554 589999999999999999999999999999999999999999999998653    679999999999999999999


Q ss_pred             EEEeCCeEEE
Q psy11928        142 WVIENQTIEE  151 (184)
Q Consensus       142 ~~l~~g~i~~  151 (184)
                      +++++|+++.
T Consensus       202 ~~l~~g~~~~  211 (213)
T cd03301         202 AVMNDGQIQQ  211 (213)
T ss_pred             EEEECCEEEe
Confidence            9999999865

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-32  Score=221.62  Aligned_cols=156  Identities=28%  Similarity=0.346  Sum_probs=123.9

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~   59 (184)
                      .|+|+++|++|+|.+++               +..+||+||++...+.. .++.+++..   ..+.+.    .++.++++
T Consensus        51 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~  129 (288)
T PRK13643         51 HLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLE  129 (288)
T ss_pred             HHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHH
Confidence            58999999999998753               23599999987322222 356555432   122222    34677899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+|+.....++++.+||||||||++|||+|+.+|+++||||||++||+.++..+.+.++++   +.|||++|||++++..
T Consensus       130 ~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~  209 (288)
T PRK13643        130 MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVAD  209 (288)
T ss_pred             HcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence            9999643334689999999999999999999999999999999999999999999988653   6799999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +||++++|++|+++. .++.+++
T Consensus       210 ~~dri~~l~~G~i~~-~g~~~~~  231 (288)
T PRK13643        210 YADYVYLLEKGHIIS-CGTPSDV  231 (288)
T ss_pred             hCCEEEEEECCEEEE-ECCHHHH
Confidence            999999999999975 5665554

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=3.6e-32  Score=219.27  Aligned_cols=154  Identities=25%  Similarity=0.350  Sum_probs=123.6

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hc-CCCH----HHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF-NLPY----EKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~-~~~~----~~~~~~l~   59 (184)
                      +|+|+.+|++|+|.+++              +..++|+||++.  +....++.+++..   .. ....    .++.++++
T Consensus        52 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~  129 (269)
T PRK11831         52 LIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGA--LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLE  129 (269)
T ss_pred             HHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccc--cCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            68999999999998653              235999999864  3344455555432   11 1122    34567899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+....+ +++++|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++.    +.|||+||||++++.
T Consensus       130 ~~gl~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~  208 (269)
T PRK11831        130 AVGLRGAAK-LMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVL  208 (269)
T ss_pred             HcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence            999986554 589999999999999999999999999999999999999999999988754    579999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||++++|++|++.. .++.+++
T Consensus       209 ~~~d~v~~l~~G~i~~-~g~~~~~  231 (269)
T PRK11831        209 SIADHAYIVADKKIVA-HGSAQAL  231 (269)
T ss_pred             HhhCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999875 4555444

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=3.4e-32  Score=229.78  Aligned_cols=154  Identities=23%  Similarity=0.290  Sum_probs=126.1

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cC-CC---HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FN-LP---YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~-~~---~~~~~~~l~   59 (184)
                      .|+|+++|++|+|.+++           ++.+||++|++.  +....++.+++...       .. ..   .+++.++++
T Consensus        48 ~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~--l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le  125 (402)
T PRK09536         48 AINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTS--LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME  125 (402)
T ss_pred             HHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCC--CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHH
Confidence            58999999999998754           346999999874  33445665554321       01 11   245778999


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+|+.+..+ +++.+|||||||||+|||||+++|++|||||||+|||+.++..++++|+++   +.|||++|||++++.+
T Consensus       126 ~vgl~~~~~-~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~  204 (402)
T PRK09536        126 RTGVAQFAD-RPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAAR  204 (402)
T ss_pred             HcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence            999986654 589999999999999999999999999999999999999999999988764   5799999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +||++++|++|++.. .++.+++
T Consensus       205 ~adrii~l~~G~iv~-~G~~~ev  226 (402)
T PRK09536        205 YCDELVLLADGRVRA-AGPPADV  226 (402)
T ss_pred             hCCEEEEEECCEEEE-ecCHHHH
Confidence            999999999999975 5666554

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-32  Score=223.85  Aligned_cols=151  Identities=17%  Similarity=0.212  Sum_probs=121.0

Q ss_pred             cccCccc----CCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH----h-c-C---CC---
Q psy11928          2 YAHCDLQ----PQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR----L-F-N---LP---   50 (184)
Q Consensus         2 ~~~G~~~----p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~-~-~---~~---   50 (184)
                      +|+|+++    |++|+|.+++               ++.|+|+||++...+.+..++.+.+..    . . +   ..   
T Consensus        52 ~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~  131 (330)
T PRK15093         52 AICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGW  131 (330)
T ss_pred             HHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHH
Confidence            5788886    5899998753               136999999975335555665544321    1 1 1   01   


Q ss_pred             -HHHHHHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcE
Q psy11928         51 -YEKARKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGG  123 (184)
Q Consensus        51 -~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~t  123 (184)
                       .+++.++++.+|+.+.  ..++++.+|||||||||+|||||+.+|++||+||||++||+.++.++.++|++    .+.|
T Consensus       132 ~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~t  211 (330)
T PRK15093        132 RKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTT  211 (330)
T ss_pred             HHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCE
Confidence             2457789999999742  22458999999999999999999999999999999999999999999999875    3679


Q ss_pred             EEEEecCHHHHHhhcCeEEEEeCCeEEEe
Q psy11928        124 VIIVSHDERLIRDTECTLWVIENQTIEEI  152 (184)
Q Consensus       124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~  152 (184)
                      ||+||||++++..+||++++|++|++++.
T Consensus       212 ii~itHdl~~v~~~~dri~vm~~G~ive~  240 (330)
T PRK15093        212 ILLISHDLQMLSQWADKINVLYCGQTVET  240 (330)
T ss_pred             EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999763

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-32  Score=220.10  Aligned_cols=155  Identities=27%  Similarity=0.356  Sum_probs=123.5

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~   61 (184)
                      .|+|+++|++|+|.+++             +..+||+||++...+ ...++.+++..   ..+...    +++.++++.+
T Consensus        52 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~  130 (287)
T PRK13637         52 HLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIV  130 (287)
T ss_pred             HHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHc
Confidence            57999999999997653             246999999873112 23455555432   122232    3467889999


Q ss_pred             CCC--cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         62 GLA--GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        62 ~l~--~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      |+.  ... ++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|+++    +.|||+||||++++.
T Consensus       131 gL~~~~~~-~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~  209 (287)
T PRK13637        131 GLDYEDYK-DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVA  209 (287)
T ss_pred             CCCchhhc-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            996  334 4589999999999999999999999999999999999999999999998653    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||++++|++|++.. .++.+++
T Consensus       210 ~~~drv~~l~~G~i~~-~g~~~~~  232 (287)
T PRK13637        210 KLADRIIVMNKGKCEL-QGTPREV  232 (287)
T ss_pred             HhCCEEEEEECCEEEE-ECCHHHH
Confidence            9999999999999975 5555444

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=5e-32  Score=213.91  Aligned_cols=153  Identities=26%  Similarity=0.388  Sum_probs=123.7

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++              +..++|+||++.  +....++.+++..   ..+..    ...+.++++.
T Consensus        50 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~  127 (233)
T cd03258          50 CINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFN--LLSSRTVFENVALPLEIAGVPKAEIEERVLELLEL  127 (233)
T ss_pred             HHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            58999999999998653              245999999874  3344555555432   11222    2356788999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~  136 (184)
                      +++++..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++|||++++..
T Consensus       128 ~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~  206 (233)
T cd03258         128 VGLEDKAD-AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKR  206 (233)
T ss_pred             CCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            99986554 589999999999999999999999999999999999999999999998753    6799999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      +||++++|++|+++. .++.++
T Consensus       207 ~~d~i~~l~~G~i~~-~~~~~~  227 (233)
T cd03258         207 ICDRVAVMEKGEVVE-EGTVEE  227 (233)
T ss_pred             hCCEEEEEECCEEEE-ecCHHH
Confidence            999999999999975 444433

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=5.8e-32  Score=216.59  Aligned_cols=155  Identities=26%  Similarity=0.389  Sum_probs=124.7

Q ss_pred             cccCcccCCceeEEecC------------------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC---
Q psy11928          2 YAHCDLQPQQGELKKNH------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP---   50 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~---   50 (184)
                      +|+|+++|++|+|.+++                        ++.++|+||++.  +....++.+++..    .....   
T Consensus        50 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~sv~enl~~~~~~~~~~~~~~  127 (257)
T PRK10619         50 CINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKQE  127 (257)
T ss_pred             HHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcc--cCCCCcHHHHHHHHHHHhCCCCHHH
Confidence            68999999999997653                        235999999874  3344555555431    11222   


Q ss_pred             -HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928         51 -YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVII  126 (184)
Q Consensus        51 -~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii  126 (184)
                       ..++.++++.+|+.....++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++.   +.|||+
T Consensus       128 ~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii  207 (257)
T PRK10619        128 ARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV  207 (257)
T ss_pred             HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence             2356788999999765424579999999999999999999999999999999999999999999988754   689999


Q ss_pred             EecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||||++++..+||+++++++|+++. .++.+++
T Consensus       208 vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~  239 (257)
T PRK10619        208 VTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQL  239 (257)
T ss_pred             EeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence            9999999999999999999999975 5555544

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-32  Score=220.47  Aligned_cols=154  Identities=25%  Similarity=0.294  Sum_probs=123.7

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l   63 (184)
                      .|+|+++|++|+|.+++           +..+||+||++...+ ...++.+++..   ..+..    .+++.++++.+|+
T Consensus        50 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L  128 (274)
T PRK13647         50 HLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM  128 (274)
T ss_pred             HHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            57899999999998764           246999999863112 23455555432   11222    2356788999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      .+..+ +++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+.   +.|||++|||++++.++||+
T Consensus       129 ~~~~~-~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~  207 (274)
T PRK13647        129 WDFRD-KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQ  207 (274)
T ss_pred             HHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence            76654 589999999999999999999999999999999999999999999999754   67999999999999999999


Q ss_pred             EEEEeCCeEEEecCChhH
Q psy11928        141 LWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       141 i~~l~~g~i~~~~~~~~~  158 (184)
                      +++|++|++++ .++.+.
T Consensus       208 i~~l~~G~i~~-~g~~~~  224 (274)
T PRK13647        208 VIVLKEGRVLA-EGDKSL  224 (274)
T ss_pred             EEEEECCEEEE-ECCHHH
Confidence            99999999875 444443

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=6.1e-32  Score=240.60  Aligned_cols=159  Identities=31%  Similarity=0.542  Sum_probs=134.1

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc-CC--C--HHHHHHHHhhCCCCcccccccccCCC
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NL--P--YEKARKQLGTFGLAGHAHTIKMKDLS   76 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~--~--~~~~~~~l~~~~l~~~~~~~~~~~LS   76 (184)
                      +|+|+++|++|+|.++....|||++|++. .+....++.+++.... ..  .  ..++.++++.|++.....++++++||
T Consensus       364 ~l~G~~~p~~G~i~~~~~~~i~y~~q~~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  442 (635)
T PRK11147        364 LMLGQLQADSGRIHCGTKLEVAYFDQHRA-ELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALS  442 (635)
T ss_pred             HHhCCCCCCCcEEEECCCcEEEEEeCccc-ccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCC
Confidence            58999999999998855568999999752 3455567766654321 11  1  34577889999996433346899999


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEe-CCeEEEecCC
Q psy11928         77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIE-NQTIEEIDGD  155 (184)
Q Consensus        77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~-~g~i~~~~~~  155 (184)
                      |||||||+||++++.+|++|||||||||||+.++..+.+.+.++++|||+||||++++..+|+++++++ +|++..+.|+
T Consensus       443 gGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~  522 (635)
T PRK11147        443 GGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGG  522 (635)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCC
Confidence            999999999999999999999999999999999999999999998899999999999999999999998 8999999999


Q ss_pred             hhHHHH
Q psy11928        156 FDDYRK  161 (184)
Q Consensus       156 ~~~~~~  161 (184)
                      +++|.+
T Consensus       523 y~~y~~  528 (635)
T PRK11147        523 YHDARQ  528 (635)
T ss_pred             HHHHHH
Confidence            999854

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=2e-32  Score=213.48  Aligned_cols=144  Identities=26%  Similarity=0.379  Sum_probs=118.0

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++              +..++|++|++.  +....++.+++...   .+..    .+++.++++.
T Consensus        47 ~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~  124 (214)
T TIGR02673        47 LLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFR--LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQ  124 (214)
T ss_pred             HHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChh--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            68999999999997653              236999999874  33345555554321   1221    2456788999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~  137 (184)
                      +++....+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++   +.|||+||||++++..+
T Consensus       125 ~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~  203 (214)
T TIGR02673       125 VGLEHKAD-AFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRV  203 (214)
T ss_pred             cCChhhhh-CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            99986554 589999999999999999999999999999999999999999999999764   67999999999999999


Q ss_pred             cCeEEEEeCCe
Q psy11928        138 ECTLWVIENQT  148 (184)
Q Consensus       138 ~~~i~~l~~g~  148 (184)
                      ||++++|++|+
T Consensus       204 ~d~i~~l~~G~  214 (214)
T TIGR02673       204 AHRVIILDDGR  214 (214)
T ss_pred             cCEEEEecCCC
Confidence            99999999884

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.9e-32  Score=227.60  Aligned_cols=154  Identities=21%  Similarity=0.242  Sum_probs=124.5

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC--HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP--YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~--~~~~~~~l~~~   61 (184)
                      +|+|+++|++|+|.+++               ++.+||+||++.  +.+..++.+++...   ....  ..++.++++.+
T Consensus        42 ~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~  119 (354)
T TIGR02142        42 LIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR--LFPHLSVRGNLRYGMKRARPSERRISFERVIELL  119 (354)
T ss_pred             HHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCc--cCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHc
Confidence            58999999999997643               245999999874  34445665554321   1111  23577899999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~  137 (184)
                      |+....+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++.    +.|||+||||++++..+
T Consensus       120 gL~~~~~-~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~  198 (354)
T TIGR02142       120 GIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRL  198 (354)
T ss_pred             CChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence            9986655 589999999999999999999999999999999999999999999988653    67999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|++.. .++.+++
T Consensus       199 ~d~i~~l~~G~i~~-~g~~~~~  219 (354)
T TIGR02142       199 ADRVVVLEDGRVAA-AGPIAEV  219 (354)
T ss_pred             CCEEEEEeCCEEEE-ECCHHHH
Confidence            99999999999975 4555443

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=9.5e-32  Score=241.15  Aligned_cols=161  Identities=37%  Similarity=0.721  Sum_probs=133.4

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH-hcCCCHHHHHHHHhhCCCCcccccccccCCChhHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR-LFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK   80 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k   80 (184)
                      +|+|+++|++|+|.++.+.++||++|++...++...+....+.. ......+++.++++.+|+......+++.+||||||
T Consensus       554 ~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqk  633 (718)
T PLN03073        554 LISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK  633 (718)
T ss_pred             HHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHH
Confidence            58999999999999887788999999864334444443222222 12334567888999999975333468999999999


Q ss_pred             HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928         81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus        81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |||+|||+++.+|++|||||||||||+.++..+.+.+.++++|||+||||++++..+|++++++++|+++.+.|++++|.
T Consensus       634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~  713 (718)
T PLN03073        634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK  713 (718)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence            99999999999999999999999999999999999998877799999999999999999999999999976788887775


Q ss_pred             HH
Q psy11928        161 KE  162 (184)
Q Consensus       161 ~~  162 (184)
                      +.
T Consensus       714 ~~  715 (718)
T PLN03073        714 KT  715 (718)
T ss_pred             HH
Confidence            54

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=8e-32  Score=213.84  Aligned_cols=154  Identities=25%  Similarity=0.344  Sum_probs=124.7

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----------CC----CHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----------NL----PYEKA   54 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----------~~----~~~~~   54 (184)
                      +|+|+++|++|+|.+++            +..++|+||++.  +....++.+++....           ..    ...++
T Consensus        47 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (242)
T TIGR03411        47 VITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT--VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRI  124 (242)
T ss_pred             HHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc--cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHH
Confidence            68999999999998753            135999999864  344456555543210           00    12356


Q ss_pred             HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHH
Q psy11928         55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDER  132 (184)
Q Consensus        55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~  132 (184)
                      .++++.+|+....+ +++++|||||+|||+||||++.+|+++||||||+|||+.++..+.+.|+++  +.|||++||+++
T Consensus       125 ~~~l~~~~l~~~~~-~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~  203 (242)
T TIGR03411       125 EEVLETIGLADEAD-RLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME  203 (242)
T ss_pred             HHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            78899999986554 589999999999999999999999999999999999999999999999865  479999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        133 LIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++..+||+++++++|++.. .++.+++
T Consensus       204 ~~~~~~d~i~~l~~g~~~~-~~~~~~~  229 (242)
T TIGR03411       204 FVRSIADKVTVLHQGSVLA-EGSLDQV  229 (242)
T ss_pred             HHHHhCCEEEEEECCeEEe-eCCHHHH
Confidence            9999999999999999875 5555554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.3e-32  Score=212.38  Aligned_cols=156  Identities=24%  Similarity=0.260  Sum_probs=126.4

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhc--C--CC---HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--N--LP---YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~--~~---~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         +..++|+||++.  +....++.+++....  .  ..   .+++.++++.+|++.
T Consensus        44 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  121 (232)
T PRK10771         44 LIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN--LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED  121 (232)
T ss_pred             HHhCCCCCCCceEEECCeecCcCChhhccEEEEecccc--cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH
Confidence            58999999999998764         246999999874  444456666553211  1  11   245778899999976


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++|||++++..+||++
T Consensus       122 ~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i  200 (232)
T PRK10771        122 LLA-RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS  200 (232)
T ss_pred             HHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence            554 589999999999999999999999999999999999999999999988653    679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~~  161 (184)
                      +++++|++.. .++.+++..
T Consensus       201 ~~l~~g~i~~-~g~~~~~~~  219 (232)
T PRK10771        201 LVVADGRIAW-DGPTDELLS  219 (232)
T ss_pred             EEEECCEEEE-eCCHHHHHh
Confidence            9999999974 566655543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.2e-32  Score=235.12  Aligned_cols=157  Identities=29%  Similarity=0.437  Sum_probs=128.2

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh--------------c--------------------
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL--------------F--------------------   47 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~--------------~--------------------   47 (184)
                      +|+|+++|++|+|.+++...+||++|++.  +....++.+++...              .                    
T Consensus        46 ~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (530)
T PRK15064         46 ILGGDLEPSAGNVSLDPNERLGKLRQDQF--AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKF  123 (530)
T ss_pred             HHhCCCCCCCceEEecCCCEEEEEeccCC--cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            68999999999999887778999999863  22333443332110              0                    


Q ss_pred             ----CC-CHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCc
Q psy11928         48 ----NL-PYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG  122 (184)
Q Consensus        48 ----~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~  122 (184)
                          +. ...++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+.+.
T Consensus       124 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~  203 (530)
T PRK15064        124 AEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS  203 (530)
T ss_pred             HhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC
Confidence                00 1235667899999975443457899999999999999999999999999999999999999999999998889


Q ss_pred             EEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928        123 GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       123 tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |||+||||++++..+||++++|++|++..+.++++++.
T Consensus       204 tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~  241 (530)
T PRK15064        204 TMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM  241 (530)
T ss_pred             eEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence            99999999999999999999999999865678777664

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=7.6e-32  Score=214.91  Aligned_cols=154  Identities=30%  Similarity=0.423  Sum_probs=123.0

Q ss_pred             cccCcccCCceeEEecC-------------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHH
Q psy11928          2 YAHCDLQPQQGELKKNH-------------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKA   54 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~   54 (184)
                      +|+|+++|++|+|.+++                   +..++|+||++.  +....++.+++..    .....    .+++
T Consensus        48 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  125 (250)
T PRK11264         48 CINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN--LFPHRTVLENIIEGPVIVKGEPKEEATARA  125 (250)
T ss_pred             HHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            58999999999997542                   235999999874  3334455555432    11222    2346


Q ss_pred             HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928         55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE  131 (184)
Q Consensus        55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~  131 (184)
                      .++++.+|+....+ +++++|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+.   +.|||++|||+
T Consensus       126 ~~~l~~~gl~~~~~-~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~  204 (250)
T PRK11264        126 RELLAKVGLAGKET-SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM  204 (250)
T ss_pred             HHHHHHcCCcchhh-CChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            77899999976554 589999999999999999999999999999999999999999999988653   67999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++..+||++++|++|+++. .++.+++
T Consensus       205 ~~~~~~~d~i~~l~~G~i~~-~~~~~~~  231 (250)
T PRK11264        205 SFARDVADRAIFMDQGRIVE-QGPAKAL  231 (250)
T ss_pred             HHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence            99999999999999999875 4555443

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=7.9e-32  Score=217.10  Aligned_cols=157  Identities=23%  Similarity=0.265  Sum_probs=123.3

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~~~~   62 (184)
                      +|+|+++|++|+|.+++           +..++|+||++...+....++.+++..    .....    .+++.++++.+|
T Consensus        58 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (267)
T PRK15112         58 MLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVG  137 (267)
T ss_pred             HHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC
Confidence            58999999999998753           235999999864223444455444321    11111    234678899999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhc
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~  138 (184)
                      +.....++++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.|.+.    +.|||+|||+++++..+|
T Consensus       138 l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~  217 (267)
T PRK15112        138 LLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHIS  217 (267)
T ss_pred             CChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhc
Confidence            9533334578999999999999999999999999999999999999999999988753    679999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++|++|++.. .++.+++
T Consensus       218 d~i~~l~~G~i~~-~~~~~~~  237 (267)
T PRK15112        218 DQVLVMHQGEVVE-RGSTADV  237 (267)
T ss_pred             CEEEEEECCEEEe-cCCHHHH
Confidence            9999999999964 5555444

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=8.5e-32  Score=212.35  Aligned_cols=154  Identities=23%  Similarity=0.345  Sum_probs=123.5

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~   62 (184)
                      +|+|+++|++|+|.+++            +..++|+||++.  +....++.+++..   .....    ..++.++++.++
T Consensus        45 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  122 (232)
T cd03218          45 MIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS--IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFH  122 (232)
T ss_pred             HHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc--ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence            58999999999998653            135999999874  3344555554432   11221    234667899999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~  139 (184)
                      ++...+ +++.+||||||||++||||++.+|++|||||||+|||+.++..+.+.+++.   +.|||++|||++++..+||
T Consensus       123 l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d  201 (232)
T cd03218         123 ITHLRK-SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD  201 (232)
T ss_pred             Chhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            986554 589999999999999999999999999999999999999999999988653   6799999999999999999


Q ss_pred             eEEEEeCCeEEEecCChhHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++|++|++.. .++.+++
T Consensus       202 ~i~~l~~G~i~~-~~~~~~~  220 (232)
T cd03218         202 RAYIIYEGKVLA-EGTPEEI  220 (232)
T ss_pred             EEEEEECCeEEE-EeCHHHh
Confidence            999999999864 4555443

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7e-32  Score=219.51  Aligned_cols=154  Identities=25%  Similarity=0.334  Sum_probs=122.7

Q ss_pred             cccCcccCCceeEEecCC---------------eEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNHR---------------LRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~---------------~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++.               ..+||+||++...+. ..++.+++..   .....    .+++.++++
T Consensus        52 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~  130 (287)
T PRK13641         52 HFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLK  130 (287)
T ss_pred             HHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            589999999999987541               359999998631122 2455555432   12222    234678899


Q ss_pred             hCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928         60 TFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~  135 (184)
                      .+|++ ...+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++   +.|||++|||++++.
T Consensus       131 ~~gL~~~~~~-~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~  209 (287)
T PRK13641        131 KVGLSEDLIS-KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVA  209 (287)
T ss_pred             HcCCChhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            99996 4444 589999999999999999999999999999999999999999999998764   579999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      .+||++++|++|+++. .++.++
T Consensus       210 ~~~d~v~~l~~G~i~~-~g~~~~  231 (287)
T PRK13641        210 EYADDVLVLEHGKLIK-HASPKE  231 (287)
T ss_pred             HhCCEEEEEECCEEEE-eCCHHH
Confidence            9999999999999875 455444

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.9e-32  Score=209.69  Aligned_cols=148  Identities=23%  Similarity=0.284  Sum_probs=121.3

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh--c--CC---CHHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL--F--NL---PYEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~--~~---~~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         +..++|+||++.  +....++.+++...  .  ..   ...++.++++.+|+.+
T Consensus        43 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  120 (213)
T TIGR01277        43 LIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD  120 (213)
T ss_pred             HHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH
Confidence            68999999999998754         245999999974  33445665554321  1  11   1245677899999976


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+.    +.|||+|||+.+++..+||++
T Consensus       121 ~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v  199 (213)
T TIGR01277       121 YLD-RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQI  199 (213)
T ss_pred             Hhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeE
Confidence            554 589999999999999999999999999999999999999999999988653    579999999999999999999


Q ss_pred             EEEeCCeEEEe
Q psy11928        142 WVIENQTIEEI  152 (184)
Q Consensus       142 ~~l~~g~i~~~  152 (184)
                      ++|++|++.+.
T Consensus       200 ~~l~~g~i~~~  210 (213)
T TIGR01277       200 AVVSQGKIKVV  210 (213)
T ss_pred             EEEECCeEEEe
Confidence            99999998753

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-32  Score=220.54  Aligned_cols=155  Identities=24%  Similarity=0.342  Sum_probs=122.7

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      .|+|+++|++|+|.+++               ++.|||+||++...+.. .++.+++..   ..+.+    .+++.++++
T Consensus        52 ~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~  130 (286)
T PRK13646         52 NINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLM  130 (286)
T ss_pred             HHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHH
Confidence            58999999999998653               23699999986322222 355555432   11222    234678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+.....++++.+|||||||||+|||||+.+|+++||||||+|||+.++.++.++++++    +.|||+||||++++.
T Consensus       131 ~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~  210 (286)
T PRK13646        131 DLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVA  210 (286)
T ss_pred             HcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            9999633333589999999999999999999999999999999999999999999998753    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      .+||++++|++|+++. .++..+
T Consensus       211 ~~~dri~~l~~G~i~~-~g~~~~  232 (286)
T PRK13646        211 RYADEVIVMKEGSIVS-QTSPKE  232 (286)
T ss_pred             HhCCEEEEEECCEEEE-ECCHHH
Confidence            9999999999999975 455544

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=4.3e-32  Score=211.19  Aligned_cols=145  Identities=30%  Similarity=0.398  Sum_probs=116.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l   63 (184)
                      +|+|+++|++|+|.+++           +..++|+||++.. .....++.+++...   .+..    ..++.++++.+++
T Consensus        46 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l  124 (211)
T cd03225          46 LLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDD-QFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL  124 (211)
T ss_pred             HHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhh-hcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc
Confidence            58999999999998754           2469999998631 11234555544321   1121    2346778999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      ....+ +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.++   +.|||++|||++++..+||+
T Consensus       125 ~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~  203 (211)
T cd03225         125 EGLRD-RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADR  203 (211)
T ss_pred             Hhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence            76554 589999999999999999999999999999999999999999999999754   57999999999999999999


Q ss_pred             EEEEeCCe
Q psy11928        141 LWVIENQT  148 (184)
Q Consensus       141 i~~l~~g~  148 (184)
                      +++|++|+
T Consensus       204 i~~l~~G~  211 (211)
T cd03225         204 VIVLEDGK  211 (211)
T ss_pred             EEEEeCCC
Confidence            99999884

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.9e-31  Score=234.26  Aligned_cols=156  Identities=26%  Similarity=0.425  Sum_probs=128.0

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh-----------------cCCC--------------
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL-----------------FNLP--------------   50 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~-----------------~~~~--------------   50 (184)
                      +|+|+++|++|+|.++....+||+||++.  +....|+.+++...                 ....              
T Consensus        52 ~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (556)
T PRK11819         52 IMAGVDKEFEGEARPAPGIKVGYLPQEPQ--LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGEL  129 (556)
T ss_pred             HHhCCCCCCCceEEecCCCEEEEEecCCC--CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence            68999999999999877778999999874  22333444332110                 0000              


Q ss_pred             ------------HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q psy11928         51 ------------YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN  118 (184)
Q Consensus        51 ------------~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~  118 (184)
                                  ..++.++++.+|+.. . ++++++|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~  207 (556)
T PRK11819        130 QEIIDAADAWDLDSQLEIAMDALRCPP-W-DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH  207 (556)
T ss_pred             HHHHHhcCccchHHHHHHHHHhCCCCc-c-cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHH
Confidence                        234667889999963 4 45899999999999999999999999999999999999999999999999


Q ss_pred             hcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        119 EYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       119 ~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      +++.|||+||||++++..+||++++|++|+++.+.++++.|.+
T Consensus       208 ~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  250 (556)
T PRK11819        208 DYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE  250 (556)
T ss_pred             hCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence            9888999999999999999999999999998767888776643

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.98  E-value=9.4e-32  Score=214.94  Aligned_cols=153  Identities=29%  Similarity=0.371  Sum_probs=124.0

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCcc--CCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAE--ETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQ   79 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~   79 (184)
                      +|+|+++|++|+|.++.+..++|+||++.  +...  .++.+++....+...+++.++++.+|+.+..+ +++.+|||||
T Consensus        49 ~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq  125 (251)
T PRK09544         49 VVLGLVAPDEGVIKRNGKLRIGYVPQKLY--LDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-APMQKLSGGE  125 (251)
T ss_pred             HHhCCCCCCceEEEECCccCEEEeccccc--cccccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-CChhhCCHHH
Confidence            58999999999999987778999999874  2222  34444443222233456788899999986554 5899999999


Q ss_pred             HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCC
Q psy11928         80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGD  155 (184)
Q Consensus        80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~  155 (184)
                      |||++||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++|||++++..+|+++++|++ +++. .++
T Consensus       126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~-~g~  203 (251)
T PRK09544        126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC-SGT  203 (251)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe-eCC
Confidence            99999999999999999999999999999999999988643    67999999999999999999999965 5654 455


Q ss_pred             hhHH
Q psy11928        156 FDDY  159 (184)
Q Consensus       156 ~~~~  159 (184)
                      .+++
T Consensus       204 ~~~~  207 (251)
T PRK09544        204 PEVV  207 (251)
T ss_pred             HHHH
Confidence            5444

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.98  E-value=4.7e-32  Score=213.66  Aligned_cols=156  Identities=21%  Similarity=0.261  Sum_probs=123.1

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC-HHHHHHHHhhCC-CC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP-YEKARKQLGTFG-LA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~-~~~~~~~l~~~~-l~   64 (184)
                      +|+|+++|++|+|.+++            +..++|+||++.  +....++.+++...   .+.. .+...++++.++ +.
T Consensus        45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~  122 (230)
T TIGR03410        45 TLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLK  122 (230)
T ss_pred             HHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCc--ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHH
Confidence            58999999999998653            235999999874  34445666554321   1222 233466777776 45


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~  140 (184)
                      ...+ +++.+||||||||++||||++.+|+++||||||+|||+.++.++.+.|.+.    +.|||++||+++++..+||+
T Consensus       123 ~~~~-~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~  201 (230)
T TIGR03410       123 EMLG-RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADR  201 (230)
T ss_pred             HHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCE
Confidence            4444 589999999999999999999999999999999999999999999998753    67999999999999999999


Q ss_pred             EEEEeCCeEEEecCChhHHHH
Q psy11928        141 LWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       141 i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      ++++++|+++. .++.+++..
T Consensus       202 v~~l~~g~i~~-~~~~~~~~~  221 (230)
T TIGR03410       202 YYVMERGRVVA-SGAGDELDE  221 (230)
T ss_pred             EEEEECCEEEE-ECCHHHcCh
Confidence            99999999975 555555533

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.98  E-value=9.8e-32  Score=213.18  Aligned_cols=154  Identities=28%  Similarity=0.316  Sum_probs=124.1

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh----cCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL----FNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~----~~~~----~~~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++             ++.++|++|++.  +.+..++.+++...    .+..    .+++.++++.
T Consensus        46 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  123 (240)
T PRK09493         46 CINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFY--LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAK  123 (240)
T ss_pred             HHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            58999999999998653             235999999864  33444555544321    1221    2346778999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~  137 (184)
                      +|++...+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.++|.++   +.|||++|||++++..+
T Consensus       124 ~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  202 (240)
T PRK09493        124 VGLAERAH-HYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV  202 (240)
T ss_pred             cCChHHHh-cChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            99976554 589999999999999999999999999999999999999999999998654   67999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|+++. .++.+++
T Consensus       203 ~d~i~~l~~G~i~~-~g~~~~~  223 (240)
T PRK09493        203 ASRLIFIDKGRIAE-DGDPQVL  223 (240)
T ss_pred             CCEEEEEECCEEEe-eCCHHHH
Confidence            99999999999975 5555544

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.98  E-value=1.1e-31  Score=222.23  Aligned_cols=151  Identities=21%  Similarity=0.238  Sum_probs=120.6

Q ss_pred             cccCcccCC---ceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHH----HhcCCCH----HHHH
Q psy11928          2 YAHCDLQPQ---QGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQ----RLFNLPY----EKAR   55 (184)
Q Consensus         2 ~~~G~~~p~---~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~----~~~~~~~----~~~~   55 (184)
                      .|+|+++|+   +|+|.+++               ++.|+|+||++...+.+..++.+.+.    ...+...    +++.
T Consensus        61 ~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~  140 (330)
T PRK09473         61 ALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESV  140 (330)
T ss_pred             HHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            578999996   99998754               13699999997433445555544332    1112222    3567


Q ss_pred             HHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEec
Q psy11928         56 KQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsH  129 (184)
                      ++++.+|+.+.  ..++++++|||||+|||+|||||+.+|++||+||||++||+.++..+.++|.+.    +.|+|+|||
T Consensus       141 ~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH  220 (330)
T PRK09473        141 RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH  220 (330)
T ss_pred             HHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence            78999999642  123589999999999999999999999999999999999999999999988643    679999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEe
Q psy11928        130 DERLIRDTECTLWVIENQTIEEI  152 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~  152 (184)
                      |+..+..+||++++|++|++++.
T Consensus       221 dl~~~~~~~Dri~vm~~G~ive~  243 (330)
T PRK09473        221 DLGVVAGICDKVLVMYAGRTMEY  243 (330)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999873

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.1e-31  Score=221.91  Aligned_cols=151  Identities=19%  Similarity=0.220  Sum_probs=119.6

Q ss_pred             cccCccc----CCceeEEecCC---------------eEEEEEecCCCCCCCccCCHHHH----HHHhcCCC----HHHH
Q psy11928          2 YAHCDLQ----PQQGELKKNHR---------------LRIGRFDQHSGEHLTAEETPAEY----LQRLFNLP----YEKA   54 (184)
Q Consensus         2 ~~~G~~~----p~~G~i~~~~~---------------~~ig~v~q~~~~~l~~~~~~~~~----~~~~~~~~----~~~~   54 (184)
                      .|+|+++    |++|+|.+++.               +.|+|+||++...+.+..++.+.    +....+..    .+++
T Consensus        52 ~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~  131 (326)
T PRK11022         52 AIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRA  131 (326)
T ss_pred             HHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            5789887    48999987531               25999999974234444554332    22211222    2457


Q ss_pred             HHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEe
Q psy11928         55 RKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS  128 (184)
Q Consensus        55 ~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivs  128 (184)
                      .++++.+|+.+.  ..++++++|||||+|||+|||||+.+|++||+||||++||+.++..++++|+++    +.|+|+||
T Consensus       132 ~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iT  211 (326)
T PRK11022        132 IDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLIT  211 (326)
T ss_pred             HHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            788999999642  224589999999999999999999999999999999999999999999988653    67999999


Q ss_pred             cCHHHHHhhcCeEEEEeCCeEEEe
Q psy11928        129 HDERLIRDTECTLWVIENQTIEEI  152 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~g~i~~~  152 (184)
                      ||++.+..+||++++|.+|++++.
T Consensus       212 Hdl~~~~~~adri~vm~~G~ive~  235 (326)
T PRK11022        212 HDLALVAEAAHKIIVMYAGQVVET  235 (326)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999874

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.98  E-value=7.5e-32  Score=211.28  Aligned_cols=152  Identities=21%  Similarity=0.305  Sum_probs=120.7

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC--CHHHHHHHHhhC-CC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL--PYEKARKQLGTF-GL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~-~l   63 (184)
                      +|+|+++|++|+|.+++            +..++|+||++.  +....++.+++...   ...  ...++.++++.+ ++
T Consensus        45 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l  122 (222)
T cd03224          45 TIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRR--IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL  122 (222)
T ss_pred             HHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccc--cCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh
Confidence            58999999999998653            235999999874  33445665554321   111  123456677777 46


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      ....+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.   +.|||++|||++++..+||+
T Consensus       123 ~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~  201 (222)
T cd03224         123 KERRK-QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADR  201 (222)
T ss_pred             hhhhh-CchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccE
Confidence            65454 589999999999999999999999999999999999999999999999764   57999999999999999999


Q ss_pred             EEEEeCCeEEEecCChh
Q psy11928        141 LWVIENQTIEEIDGDFD  157 (184)
Q Consensus       141 i~~l~~g~i~~~~~~~~  157 (184)
                      +++|++|++.. .++.+
T Consensus       202 i~~l~~G~i~~-~~~~~  217 (222)
T cd03224         202 AYVLERGRVVL-EGTAA  217 (222)
T ss_pred             EEEeeCCeEEE-eCCHH
Confidence            99999999875 44443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=7.9e-32  Score=212.90  Aligned_cols=146  Identities=25%  Similarity=0.364  Sum_probs=118.6

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++               ++.++|+||++.  +....++.+++..   ..+..    .+++.++++
T Consensus        54 ~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~  131 (233)
T PRK11629         54 LLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHH--LLPDFTALENVAMPLLIGKKKPAEINSRALEMLA  131 (233)
T ss_pred             HHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            58999999999998753               145999999864  3334456555432   11211    235678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+++..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||+||||++++.
T Consensus       132 ~~gl~~~~~-~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~  210 (233)
T PRK11629        132 AVGLEHRAN-HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAK  210 (233)
T ss_pred             HcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            999986554 589999999999999999999999999999999999999999999998753    679999999999998


Q ss_pred             hhcCeEEEEeCCeEEE
Q psy11928        136 DTECTLWVIENQTIEE  151 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~  151 (184)
                      .. +++++|++|+++.
T Consensus       211 ~~-~~~~~l~~G~i~~  225 (233)
T PRK11629        211 RM-SRQLEMRDGRLTA  225 (233)
T ss_pred             hh-CEEEEEECCEEEE
Confidence            75 6899999999864

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.98  E-value=1.3e-31  Score=212.87  Aligned_cols=154  Identities=27%  Similarity=0.372  Sum_probs=123.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l   63 (184)
                      +|+|+.+|++|+|.+++           +..++|+||++.  +....++.+++..   ..+..    .+++.++++.+|+
T Consensus        46 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l  123 (242)
T cd03295          46 MINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGL  123 (242)
T ss_pred             HHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCcc--ccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999998653           246999999874  3344555555432   11222    2356788999999


Q ss_pred             Cc--ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928         64 AG--HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        64 ~~--~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~  137 (184)
                      ..  ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++||+.+++..+
T Consensus       124 ~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~  202 (242)
T cd03295         124 DPAEFAD-RYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRL  202 (242)
T ss_pred             CcHHHHh-cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence            75  444 589999999999999999999999999999999999999999999988753    67999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|+++. .++.+.+
T Consensus       203 ~d~i~~l~~G~i~~-~~~~~~~  223 (242)
T cd03295         203 ADRIAIMKNGEIVQ-VGTPDEI  223 (242)
T ss_pred             CCEEEEEECCEEEE-ecCHHHH
Confidence            99999999999975 4554443

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.98  E-value=1.9e-31  Score=209.40  Aligned_cols=151  Identities=28%  Similarity=0.368  Sum_probs=124.4

Q ss_pred             cccCcccCCceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCHHHHHHHHhhCCCCccccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPYEKARKQLGTFGLAGHAHTIK   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~   71 (184)
                      +|+|+++|++|+|.+++       .+.++|+||++.  +....++.+++..   ..+....++.++++.+|+++..+ ++
T Consensus        45 ~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~  121 (223)
T TIGR03740        45 MITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP--LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-KK  121 (223)
T ss_pred             HHhCCCCCCceEEEECCEeccccccccEEEEcCCCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-hh
Confidence            58999999999998754       246999999864  3334455555432   22334567788999999986654 58


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      +.+|||||+||++||||++.+|+++||||||+|||+.+++.+.+.|.++   +.|||++|||++++..+||+++++++|+
T Consensus       122 ~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  201 (223)
T TIGR03740       122 AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGV  201 (223)
T ss_pred             HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCE
Confidence            9999999999999999999999999999999999999999999999764   5799999999999999999999999999


Q ss_pred             EEEecCCh
Q psy11928        149 IEEIDGDF  156 (184)
Q Consensus       149 i~~~~~~~  156 (184)
                      +.. .++.
T Consensus       202 i~~-~~~~  208 (223)
T TIGR03740       202 LGY-QGKI  208 (223)
T ss_pred             EEE-ecCh
Confidence            875 3443

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=1.3e-31  Score=212.69  Aligned_cols=148  Identities=24%  Similarity=0.304  Sum_probs=120.7

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHA   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~   67 (184)
                      +|+|+.+|++|+|.+++           +..++|+||++.  +.. .++.+++...   ......++.++++.+|+....
T Consensus        48 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~  124 (241)
T PRK14250         48 LINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY  124 (241)
T ss_pred             HHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH
Confidence            68999999999998754           246999999874  222 3565554321   111234677889999996333


Q ss_pred             ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEE
Q psy11928         68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      .++++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++
T Consensus       125 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~  204 (241)
T PRK14250        125 ATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAF  204 (241)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEE
Confidence            34589999999999999999999999999999999999999999999988653    68999999999999999999999


Q ss_pred             EeCCeEEEe
Q psy11928        144 IENQTIEEI  152 (184)
Q Consensus       144 l~~g~i~~~  152 (184)
                      |++|+++..
T Consensus       205 l~~G~i~~~  213 (241)
T PRK14250        205 LNKGILVEY  213 (241)
T ss_pred             EeCCEEEEe
Confidence            999999753

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=9.7e-32  Score=221.60  Aligned_cols=155  Identities=22%  Similarity=0.280  Sum_probs=123.4

Q ss_pred             cccCcccCCceeEEecC---------------------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH
Q psy11928          2 YAHCDLQPQQGELKKNH---------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY   51 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~   51 (184)
                      +|+|+++|++|+|.+++                           ++.+||+||++...+.. .++.+++..   ..+.+.
T Consensus        71 ~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~  149 (320)
T PRK13631         71 HFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKK  149 (320)
T ss_pred             HHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCH
Confidence            58999999999998652                           23599999987322322 366655432   112222


Q ss_pred             ----HHHHHHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcE
Q psy11928         52 ----EKARKQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGG  123 (184)
Q Consensus        52 ----~~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~t  123 (184)
                          +++.++++.+|+. ...+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|.+.   +.|
T Consensus       150 ~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~T  228 (320)
T PRK13631        150 SEAKKLAKFYLNKMGLDDSYLE-RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKT  228 (320)
T ss_pred             HHHHHHHHHHHHHcCCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCE
Confidence                3467789999996 3444 589999999999999999999999999999999999999999999998653   679


Q ss_pred             EEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        124 VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||+||||++++..+||++++|++|+++. .|+.+++
T Consensus       229 iiivtHd~~~~~~~adri~vl~~G~i~~-~g~~~~~  263 (320)
T PRK13631        229 VFVITHTMEHVLEVADEVIVMDKGKILK-TGTPYEI  263 (320)
T ss_pred             EEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999999999975 5555443

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.98  E-value=8.3e-32  Score=230.93  Aligned_cols=154  Identities=23%  Similarity=0.250  Sum_probs=125.1

Q ss_pred             cccCcccCC----ceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHH----HhcCCC----HHHH
Q psy11928          2 YAHCDLQPQ----QGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQ----RLFNLP----YEKA   54 (184)
Q Consensus         2 ~~~G~~~p~----~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~----~~~~~~----~~~~   54 (184)
                      .|.|++++.    +|+|.+++               ...|+++||+|...+.+..++..-+.    ...+..    .+++
T Consensus        54 ~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a  133 (539)
T COG1123          54 ALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRA  133 (539)
T ss_pred             HHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHH
Confidence            356788776    79997653               35799999998655666666543332    122121    3457


Q ss_pred             HHHHhhCCCCcccc-cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11928         55 RKQLGTFGLAGHAH-TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSH  129 (184)
Q Consensus        55 ~~~l~~~~l~~~~~-~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsH  129 (184)
                      .++|+.+|+.+... +++|++|||||||||.||+||+.+|++||+||||.+||+..+.+++++|++    .+.++|+|||
T Consensus       134 ~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITH  213 (539)
T COG1123         134 VELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH  213 (539)
T ss_pred             HHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcC
Confidence            78999999986554 258999999999999999999999999999999999999999999999975    4789999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCCh
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDF  156 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~  156 (184)
                      |++.+.++|||+++|++|++++ .|+.
T Consensus       214 Dl~Vva~~aDrv~Vm~~G~iVE-~G~~  239 (539)
T COG1123         214 DLGVVAELADRVVVMYKGEIVE-TGPT  239 (539)
T ss_pred             CHHHHHHhcCeEEEEECCEEEE-ecCH
Confidence            9999999999999999999987 4443

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.98  E-value=2.9e-31  Score=233.16  Aligned_cols=161  Identities=27%  Similarity=0.491  Sum_probs=132.0

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc---CC--CHHHHHHHHhhCCCCcccccccccCCC
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF---NL--PYEKARKQLGTFGLAGHAHTIKMKDLS   76 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS   76 (184)
                      +|+|+++|++|+|.++....+||+||++. .+....++.+++....   ..  ....+..+++.+|+.....++++++||
T Consensus       369 ~i~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  447 (556)
T PRK11819        369 MITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLS  447 (556)
T ss_pred             HHhCCCCCCCeEEEECCceEEEEEeCchh-hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCC
Confidence            58999999999999865567999999852 2344556666554211   11  123456789999996433345899999


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeC-CeEEEecCC
Q psy11928         77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIEN-QTIEEIDGD  155 (184)
Q Consensus        77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~-g~i~~~~~~  155 (184)
                      |||||||+||||++.+|++|||||||+|||+.++..+.+.|.++.+|||+||||++++..+||+++++++ |++..+.|+
T Consensus       448 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~  527 (556)
T PRK11819        448 GGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGN  527 (556)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCC
Confidence            9999999999999999999999999999999999999999999877999999999999999999999986 788777888


Q ss_pred             hhHHHHHH
Q psy11928        156 FDDYRKEL  163 (184)
Q Consensus       156 ~~~~~~~~  163 (184)
                      +++|.+..
T Consensus       528 ~~~~~~~~  535 (556)
T PRK11819        528 FQEYEEDK  535 (556)
T ss_pred             HHHHHHHH
Confidence            88776553

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.98  E-value=1.4e-31  Score=211.89  Aligned_cols=154  Identities=27%  Similarity=0.364  Sum_probs=123.1

Q ss_pred             cccCcccCCceeEEecCC----------eEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNHR----------LRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+.+|++|+|.+++.          +.++|+||++.  +....++.+++..   ..+..    .+++.++++.+|+.
T Consensus        46 ~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~  123 (236)
T TIGR03864        46 LLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPT--LDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA  123 (236)
T ss_pred             HHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCC--CcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh
Confidence            589999999999987541          36999999864  3344555555432   11222    23467789999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~  140 (184)
                      ...+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++|||++++.. ||+
T Consensus       124 ~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~  201 (236)
T TIGR03864       124 ERAD-DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDR  201 (236)
T ss_pred             hhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCE
Confidence            6554 589999999999999999999999999999999999999999999988653    5799999999999975 999


Q ss_pred             EEEEeCCeEEEecCChhHHH
Q psy11928        141 LWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       141 i~~l~~g~i~~~~~~~~~~~  160 (184)
                      +++|++|++.. .++.+.+.
T Consensus       202 i~~l~~G~i~~-~~~~~~~~  220 (236)
T TIGR03864       202 LVVLHRGRVLA-DGAAAELR  220 (236)
T ss_pred             EEEEeCCeEEE-eCCHHHHH
Confidence            99999999875 55555443

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.98  E-value=1.1e-31  Score=215.96  Aligned_cols=157  Identities=22%  Similarity=0.289  Sum_probs=123.0

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++              +..++|+||++...+....++.+++..    .....    .+++.++++
T Consensus        56 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~  135 (265)
T TIGR02769        56 LLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLD  135 (265)
T ss_pred             HHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            68999999999998653              235999999863123334555554321    11121    245678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+.....++++.+|||||||||+||||++.+|++|||||||++||+.++..+.+.|.++    +.|||+||||++++.
T Consensus       136 ~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~  215 (265)
T TIGR02769       136 MVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQ  215 (265)
T ss_pred             HcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence            9999633223589999999999999999999999999999999999999999999888653    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||++++|++|+++. .++.+++
T Consensus       216 ~~~d~i~~l~~G~i~~-~g~~~~~  238 (265)
T TIGR02769       216 SFCQRVAVMDKGQIVE-ECDVAQL  238 (265)
T ss_pred             HHhcEEEEEeCCEEEE-ECCHHHH
Confidence            9999999999999975 4554443

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.98  E-value=8.5e-32  Score=210.80  Aligned_cols=151  Identities=29%  Similarity=0.366  Sum_probs=122.4

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+.+|++|+|.+++          ++.+||++|++.  +....++.+++..   .++..    .+++.++++.+++.
T Consensus        47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  124 (220)
T cd03263          47 MLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT  124 (220)
T ss_pred             HHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence            58999999999998754          235999999874  3334455554432   12222    23567889999997


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      +..+ +++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+.  +.|||++|||++++..+||+++
T Consensus       125 ~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~  203 (220)
T cd03263         125 DKAN-KRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIA  203 (220)
T ss_pred             HHHh-ChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEE
Confidence            6554 589999999999999999999999999999999999999999999999765  4699999999999999999999


Q ss_pred             EEeCCeEEEecCCh
Q psy11928        143 VIENQTIEEIDGDF  156 (184)
Q Consensus       143 ~l~~g~i~~~~~~~  156 (184)
                      ++++|+++. .++.
T Consensus       204 ~l~~g~i~~-~~~~  216 (220)
T cd03263         204 IMSDGKLRC-IGSP  216 (220)
T ss_pred             EEECCEEEe-cCCH
Confidence            999999875 4443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.98  E-value=1e-31  Score=211.37  Aligned_cols=147  Identities=26%  Similarity=0.305  Sum_probs=119.4

Q ss_pred             cccCcc-----cCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDL-----QPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~-----~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+.     +|++|+|.+++             +..+||+||++.  +. ..++.+++..   ..+. .    .+++.
T Consensus        45 ~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~  121 (227)
T cd03260          45 LLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVE  121 (227)
T ss_pred             HHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHH
Confidence            578999     99999998653             235999999874  33 4566655432   1111 1    24567


Q ss_pred             HHHhhCCCCccccccc-ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHH
Q psy11928         56 KQLGTFGLAGHAHTIK-MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDER  132 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~-~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~  132 (184)
                      ++++.+|+....+.+. +.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+..  .|||++|||++
T Consensus       122 ~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~  201 (227)
T cd03260         122 EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ  201 (227)
T ss_pred             HHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH
Confidence            8899999986554423 59999999999999999999999999999999999999999999997653  69999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEE
Q psy11928        133 LIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~  151 (184)
                      ++..+||++++|++|+++.
T Consensus       202 ~~~~~~d~i~~l~~G~i~~  220 (227)
T cd03260         202 QAARVADRTAFLLNGRLVE  220 (227)
T ss_pred             HHHHhCCEEEEEeCCEEEE
Confidence            9999999999999999875

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10908 cell division protein FtsE; Provisional

Probab=99.98  E-value=1.6e-31  Score=209.73  Aligned_cols=146  Identities=24%  Similarity=0.330  Sum_probs=119.8

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++              +..++|+||++.  +....++.+++..   ..+...    +++.++++.
T Consensus        47 ~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~  124 (222)
T PRK10908         47 LICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHH--LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK  124 (222)
T ss_pred             HHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcc--ccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHH
Confidence            58999999999997653              236999999874  3344566655432   122222    246678999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~  137 (184)
                      +++....+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.+.+.   +.|+|++|||++++..+
T Consensus       125 ~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  203 (222)
T PRK10908        125 VGLLDKAK-NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR  203 (222)
T ss_pred             cCChhhhh-CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            99976554 589999999999999999999999999999999999999999999988754   57999999999999999


Q ss_pred             cCeEEEEeCCeEE
Q psy11928        138 ECTLWVIENQTIE  150 (184)
Q Consensus       138 ~~~i~~l~~g~i~  150 (184)
                      ||++++|++|+++
T Consensus       204 ~d~i~~l~~G~i~  216 (222)
T PRK10908        204 SYRMLTLSDGHLH  216 (222)
T ss_pred             CCEEEEEECCEEc
Confidence            9999999999885

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.98  E-value=1.6e-31  Score=209.42  Aligned_cols=145  Identities=26%  Similarity=0.344  Sum_probs=117.5

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+.+|++|+|.+++               +..++|+||++.  +....++.+++..   .....    .+++.++++
T Consensus        50 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~  127 (221)
T TIGR02211        50 LLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHH--LLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE  127 (221)
T ss_pred             HHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            58999999999998653               146999999864  3334455555432   11121    235678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|++...+ +++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.|.+.    +.|||++|||++++.
T Consensus       128 ~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~  206 (221)
T TIGR02211       128 KVGLEHRIN-HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK  206 (221)
T ss_pred             HcCChhhhh-CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence            999986554 589999999999999999999999999999999999999999999998643    679999999999997


Q ss_pred             hhcCeEEEEeCCeEE
Q psy11928        136 DTECTLWVIENQTIE  150 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~  150 (184)
                      . ||++++|++|+++
T Consensus       207 ~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       207 K-LDRVLEMKDGQLF  220 (221)
T ss_pred             h-cCEEEEEeCCEec
Confidence            5 7999999999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=1.5e-31  Score=212.30  Aligned_cols=154  Identities=20%  Similarity=0.276  Sum_probs=124.0

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c-CCC----HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F-NLP----YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~-~~~----~~~~~~~l~~~   61 (184)
                      +|+|+.+|++|+|.+++            +..++|+||++.  +....++.+++...   . ...    ..++.++++.+
T Consensus        48 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~  125 (241)
T PRK10895         48 MVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF  125 (241)
T ss_pred             HHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCc--ccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHc
Confidence            68999999999998753            246999999874  33445555554321   1 111    23467789999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHHHHHhhc
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~  138 (184)
                      |+....+ +++.+|||||+|||+||||++.+|+++||||||+|||+.++..+.+.+.+   .+.|||++||+++++..+|
T Consensus       126 ~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~  204 (241)
T PRK10895        126 HIEHLRD-SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVC  204 (241)
T ss_pred             CCHHHhh-cchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhc
Confidence            9976554 58999999999999999999999999999999999999999998888764   3679999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++|++|+++. .++.+++
T Consensus       205 d~v~~l~~G~i~~-~~~~~~~  224 (241)
T PRK10895        205 ERAYIVSQGHLIA-HGTPTEI  224 (241)
T ss_pred             CEEEEEeCCeEEe-eCCHHHH
Confidence            9999999999875 5665554

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.98  E-value=1.6e-31  Score=214.60  Aligned_cols=157  Identities=22%  Similarity=0.253  Sum_probs=125.1

Q ss_pred             cccCcccCC---ceeEEecC----------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----------C-CC
Q psy11928          2 YAHCDLQPQ---QGELKKNH----------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----------N-LP   50 (184)
Q Consensus         2 ~~~G~~~p~---~G~i~~~~----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----------~-~~   50 (184)
                      .|+|+++|+   +|+|.+++                +..++|+||++.  +....++.+++....           . ..
T Consensus        49 ~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  126 (262)
T PRK09984         49 HLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN--LVNRLSVLENVLIGALGSTPFWRTCFSWFT  126 (262)
T ss_pred             HHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc--cccCCcHHHHHHhhhcccccchhhhccccc
Confidence            589999886   49997654                125899999874  334456666553210           0 01


Q ss_pred             ---HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcE
Q psy11928         51 ---YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGG  123 (184)
Q Consensus        51 ---~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~t  123 (184)
                         ..++.++++.+|+....+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|++.    +.|
T Consensus       127 ~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~t  205 (262)
T PRK09984        127 REQKQRALQALTRVGMVHFAH-QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGIT  205 (262)
T ss_pred             HHHHHHHHHHHHHcCCHHHHh-CCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence               235678899999976554 589999999999999999999999999999999999999999999999754    579


Q ss_pred             EEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHHH
Q psy11928        124 VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKE  162 (184)
Q Consensus       124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~  162 (184)
                      ||++|||++++..+|++++++++|++.. .++.+++.+.
T Consensus       206 vii~tH~~~~~~~~~d~i~~l~~g~i~~-~g~~~~~~~~  243 (262)
T PRK09984        206 VVVTLHQVDYALRYCERIVALRQGHVFY-DGSSQQFDNE  243 (262)
T ss_pred             EEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHhccH
Confidence            9999999999999999999999999864 6676666443

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.98  E-value=1.7e-31  Score=210.28  Aligned_cols=146  Identities=27%  Similarity=0.268  Sum_probs=118.3

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++               +..++|+||++.  +....++.+++..   .....    .+++.++++
T Consensus        55 ~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~  132 (228)
T PRK10584         55 ILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM--LIPTLNALENVELPALLRGESSRQSRNGAKALLE  132 (228)
T ss_pred             HHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccc--cCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            68999999999998653               136999999874  3334455555432   11111    245778899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+++.+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++    +.|||++|||.+++.
T Consensus       133 ~~~l~~~~~-~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  211 (228)
T PRK10584        133 QLGLGKRLD-HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA  211 (228)
T ss_pred             HcCCHhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            999976554 589999999999999999999999999999999999999999999998643    679999999999986


Q ss_pred             hhcCeEEEEeCCeEEE
Q psy11928        136 DTECTLWVIENQTIEE  151 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~  151 (184)
                      . ||+++++++|++.+
T Consensus       212 ~-~d~i~~l~~g~i~~  226 (228)
T PRK10584        212 R-CDRRLRLVNGQLQE  226 (228)
T ss_pred             h-CCEEEEEECCEEEe
Confidence            5 99999999999854

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.8e-31  Score=213.36  Aligned_cols=154  Identities=25%  Similarity=0.364  Sum_probs=123.1

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-------------cC-----CC-
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------------FN-----LP-   50 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------------~~-----~~-   50 (184)
                      +|+|+.+|++|+|.+++            +..++|+||++.  +....++.+++...             ..     .. 
T Consensus        50 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (255)
T PRK11300         50 CLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVR--LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE  127 (255)
T ss_pred             HHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcc--cCCCCcHHHHHHHhhhccccchhhhhhccccccccch
Confidence            68999999999998754            124889999874  34445555544321             00     00 


Q ss_pred             ---HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcE
Q psy11928         51 ---YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGG  123 (184)
Q Consensus        51 ---~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~t  123 (184)
                         ...+.++++.+|+....+ +++.+||||||||++||||++.+|++|||||||+|||+.++..+.+.|.+.    +.|
T Consensus       128 ~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~t  206 (255)
T PRK11300        128 SEALDRAATWLERVGLLEHAN-RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVT  206 (255)
T ss_pred             hHHHHHHHHHHHhCChhhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCE
Confidence               134667889999976554 589999999999999999999999999999999999999999999998643    679


Q ss_pred             EEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        124 VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       124 iiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++||+++++..+||+++++++|+++. .++.+.+
T Consensus       207 ii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~  241 (255)
T PRK11300        207 VLLIEHDMKLVMGISDRIYVVNQGTPLA-NGTPEEI  241 (255)
T ss_pred             EEEEeCCHHHHHHhCCEEEEEECCeEEe-cCCHHHH
Confidence            9999999999999999999999999974 5555554

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.98  E-value=9.4e-32  Score=238.89  Aligned_cols=154  Identities=23%  Similarity=0.251  Sum_probs=123.8

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++              ++.|+|+||++...+.+..++.+++..   ..+. .    .+++.++++
T Consensus       369 ~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~  448 (623)
T PRK10261        369 ALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLE  448 (623)
T ss_pred             HHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            58999999999998753              236999999873234555666655432   1121 1    245778999


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~  135 (184)
                      .+|+.....++++++|||||||||+|||||+.+|++|||||||++||+.++..+.++|++    .+.|||+||||++++.
T Consensus       449 ~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~  528 (623)
T PRK10261        449 RVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVE  528 (623)
T ss_pred             HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999963223468999999999999999999999999999999999999999999999854    4689999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCCh
Q psy11928        136 DTECTLWVIENQTIEEIDGDF  156 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~  156 (184)
                      .+||++++|++|++++ .++.
T Consensus       529 ~~~dri~vl~~G~iv~-~g~~  548 (623)
T PRK10261        529 RISHRVAVMYLGQIVE-IGPR  548 (623)
T ss_pred             HhCCEEEEEECCEEEE-ecCH
Confidence            9999999999999975 4443

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.3e-31  Score=212.76  Aligned_cols=154  Identities=30%  Similarity=0.360  Sum_probs=124.4

Q ss_pred             cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARK   56 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~   56 (184)
                      +|+|+.+|++|+|.+++                 +..++|+||++.  +....++.+++..    ..+..    ..++.+
T Consensus        47 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~  124 (242)
T PRK11124         47 VLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN--LWPHLTVQQNLIEAPCRVLGLSKDQALARAEK  124 (242)
T ss_pred             HHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            58999999999998653                 235999999874  3444566655431    11222    234677


Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL  133 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~  133 (184)
                      +++.+|+....+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|++.   +.|+|++|||.++
T Consensus       125 ~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~  203 (242)
T PRK11124        125 LLERLRLKPYAD-RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV  203 (242)
T ss_pred             HHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            899999976554 589999999999999999999999999999999999999999999998753   6899999999999


Q ss_pred             HHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        134 IRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +..+||++++|++|++.. .++.+.+
T Consensus       204 ~~~~~d~i~~l~~g~i~~-~~~~~~~  228 (242)
T PRK11124        204 ARKTASRVVYMENGHIVE-QGDASCF  228 (242)
T ss_pred             HHHhcCEEEEEECCEEEE-eCCHHHh
Confidence            999999999999999875 5555444

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.98  E-value=6.4e-32  Score=210.57  Aligned_cols=145  Identities=25%  Similarity=0.387  Sum_probs=118.4

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~   60 (184)
                      +|+|+.+|++|+|.+++              ++.++|++|++.  +....++.+++...   .+..    .+++.++++.
T Consensus        46 ~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  123 (214)
T cd03292          46 LIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFR--LLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL  123 (214)
T ss_pred             HHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCch--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            58999999999997653              235999999874  33444555554321   1222    2356788999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~  137 (184)
                      +|++...+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|+++   +.|||++|||.+++..+
T Consensus       124 ~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~  202 (214)
T cd03292         124 VGLSHKHR-ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT  202 (214)
T ss_pred             cCCHHHhh-CChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            99976554 589999999999999999999999999999999999999999999998764   57999999999999999


Q ss_pred             cCeEEEEeCCeE
Q psy11928        138 ECTLWVIENQTI  149 (184)
Q Consensus       138 ~~~i~~l~~g~i  149 (184)
                      ||++++|++|++
T Consensus       203 ~d~i~~l~~G~~  214 (214)
T cd03292         203 RHRVIALERGKL  214 (214)
T ss_pred             CCEEEEEeCCcC
Confidence            999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.98  E-value=2.1e-31  Score=210.25  Aligned_cols=147  Identities=23%  Similarity=0.219  Sum_probs=119.6

Q ss_pred             cccCcccCCceeEEecCC------eEEEEEecCCCCCCCccCCHHHHHHHh-----cCCCH----HHHHHHHhhCCCCcc
Q psy11928          2 YAHCDLQPQQGELKKNHR------LRIGRFDQHSGEHLTAEETPAEYLQRL-----FNLPY----EKARKQLGTFGLAGH   66 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~~~~~~~~~~-----~~~~~----~~~~~~l~~~~l~~~   66 (184)
                      +|+|+.+|++|+|.+++.      ...+|++|++.  +....++.+++...     .....    +++.++++.+|++..
T Consensus        30 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  107 (230)
T TIGR01184        30 LISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEA  107 (230)
T ss_pred             HHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHH
Confidence            589999999999987642      23589999874  33445555554321     11221    246778999999865


Q ss_pred             cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEE
Q psy11928         67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        67 ~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      .+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+.    +.|||+||||++++..+||+++
T Consensus       108 ~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~  186 (230)
T TIGR01184       108 AD-KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVV  186 (230)
T ss_pred             Hc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence            54 589999999999999999999999999999999999999999999988653    6799999999999999999999


Q ss_pred             EEeCCeEEE
Q psy11928        143 VIENQTIEE  151 (184)
Q Consensus       143 ~l~~g~i~~  151 (184)
                      +|++|+++.
T Consensus       187 ~l~~G~i~~  195 (230)
T TIGR01184       187 MLTNGPAAN  195 (230)
T ss_pred             EEeCCcEec
Confidence            999999864

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.98  E-value=2.8e-31  Score=208.74  Aligned_cols=149  Identities=23%  Similarity=0.270  Sum_probs=117.5

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C-H---HH-HHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P-Y---EK-ARKQL   58 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~-~---~~-~~~~l   58 (184)
                      +|+|+++|++|+|.+++              +..+||++|++...+....++.+++..   .... . .   .. +.+++
T Consensus        50 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l  129 (228)
T cd03257          50 AILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLL  129 (228)
T ss_pred             HHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            68999999999998643              236999999873123334555554431   1111 1 1   11 24678


Q ss_pred             hhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928         59 GTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL  133 (184)
Q Consensus        59 ~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~  133 (184)
                      +.+++. ...+ +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+.    +.|||++|||+++
T Consensus       130 ~~~~l~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  208 (228)
T cd03257         130 VGVGLPEEVLN-RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV  208 (228)
T ss_pred             HHCCCChhHhh-CCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            899995 3444 589999999999999999999999999999999999999999999998653    6799999999999


Q ss_pred             HHhhcCeEEEEeCCeEEE
Q psy11928        134 IRDTECTLWVIENQTIEE  151 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~  151 (184)
                      +..+||++++|++|++..
T Consensus       209 ~~~~~d~i~~l~~G~i~~  226 (228)
T cd03257         209 VAKIADRVAVMYAGKIVE  226 (228)
T ss_pred             HHHhcCeEEEEeCCEEEe
Confidence            999999999999999864

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.9e-31  Score=213.63  Aligned_cols=147  Identities=22%  Similarity=0.281  Sum_probs=120.3

Q ss_pred             cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~~   68 (184)
                      +|+|+++|++|+|.+++      ...+||++|++.  +....++.+++..   ..+..    ..++.++++.+|+....+
T Consensus        46 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~  123 (255)
T PRK11248         46 LIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG--LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK  123 (255)
T ss_pred             HHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc--cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh
Confidence            58999999999998754      235899999864  3344556555432   11222    235678899999976554


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                       +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+.    +.|||+||||++++..+||++++|
T Consensus       124 -~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l  202 (255)
T PRK11248        124 -RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL  202 (255)
T ss_pred             -CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence             589999999999999999999999999999999999999999999998764    679999999999999999999999


Q ss_pred             e--CCeEEE
Q psy11928        145 E--NQTIEE  151 (184)
Q Consensus       145 ~--~g~i~~  151 (184)
                      +  +|++++
T Consensus       203 ~~~~G~i~~  211 (255)
T PRK11248        203 SPGPGRVVE  211 (255)
T ss_pred             eCCCcEEEE
Confidence            8  488865

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.98  E-value=1.8e-31  Score=231.37  Aligned_cols=160  Identities=38%  Similarity=0.696  Sum_probs=142.1

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccccccccCCChhHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK   80 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k   80 (184)
                      +|+|...|.+|+|.+....++||+.|+... +....++.+++..... .....++.+|..|+|......++++.||||||
T Consensus       367 ~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~-l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk  445 (530)
T COG0488         367 LLAGELGPLSGTVKVGETVKIGYFDQHRDE-LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEK  445 (530)
T ss_pred             HHhhhcccCCceEEeCCceEEEEEEehhhh-cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHH
Confidence            578899999999999888899999998752 3366788888876542 23577899999999987666679999999999


Q ss_pred             HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928         81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus        81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      .|+.||+.++.+|.+||||||||+||+.++..+.+.|.++.+|||+||||++|+..+|+++|++++ ++..+.|.+++|.
T Consensus       446 ~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~  524 (530)
T COG0488         446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL  524 (530)
T ss_pred             HHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998 7877889998887


Q ss_pred             HHH
Q psy11928        161 KEL  163 (184)
Q Consensus       161 ~~~  163 (184)
                      +..
T Consensus       525 ~~~  527 (530)
T COG0488         525 EQK  527 (530)
T ss_pred             Hhh
Confidence            653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.98  E-value=2.9e-31  Score=212.67  Aligned_cols=156  Identities=25%  Similarity=0.307  Sum_probs=119.8

Q ss_pred             cccCcccCCceeEEecCC--------------------eEEEEEecCCCCCC----CccCCHHHHHHHhcCCC----HHH
Q psy11928          2 YAHCDLQPQQGELKKNHR--------------------LRIGRFDQHSGEHL----TAEETPAEYLQRLFNLP----YEK   53 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~--------------------~~ig~v~q~~~~~l----~~~~~~~~~~~~~~~~~----~~~   53 (184)
                      +|+|+++|++|+|.+++.                    ..++|+||++...+    +..+++...+.......    ..+
T Consensus        51 ~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  130 (258)
T PRK11701         51 ALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT  130 (258)
T ss_pred             HHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH
Confidence            689999999999976542                    24999999873122    22333322211111111    235


Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEec
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSH  129 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsH  129 (184)
                      +.++++.+++.....++++.+||||||||++|||||+.+|+++||||||++||+.++.++.+.+++.    +.|||++||
T Consensus       131 ~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH  210 (258)
T PRK11701        131 AGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH  210 (258)
T ss_pred             HHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence            6778999999642223589999999999999999999999999999999999999999999988643    679999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      |++++..+||+++++++|++++ .++.++
T Consensus       211 ~~~~~~~~~d~i~~l~~g~i~~-~~~~~~  238 (258)
T PRK11701        211 DLAVARLLAHRLLVMKQGRVVE-SGLTDQ  238 (258)
T ss_pred             CHHHHHHhcCEEEEEECCEEEE-eCCHHH
Confidence            9999999999999999999975 454443

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.98  E-value=2e-31  Score=209.53  Aligned_cols=156  Identities=23%  Similarity=0.293  Sum_probs=123.3

Q ss_pred             cccCcccCCceeEEecCC------eEEEEEecCCCCCCCccCCHHHHHHHh-------c-CCC---HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNHR------LRIGRFDQHSGEHLTAEETPAEYLQRL-------F-NLP---YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~-~~~---~~~~~~~l~~~~l~   64 (184)
                      +|+|+.+|++|+|.+++.      +.++|+||++........++.+++...       . ...   .+++.++++.++++
T Consensus        25 ~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  104 (223)
T TIGR03771        25 AILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT  104 (223)
T ss_pred             HHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCc
Confidence            589999999999998763      469999998742111224555544221       0 011   23567789999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ...+ +++.+||||||||++||||++.+|+++|+||||++||+.++..+.+.+.+.   +.|+|++|||++++..+||++
T Consensus       105 ~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i  183 (223)
T TIGR03771       105 ELAD-RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRV  183 (223)
T ss_pred             hhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence            6554 589999999999999999999999999999999999999999999999754   579999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      +++ +|+++. .++.+++.
T Consensus       184 ~~l-~G~i~~-~~~~~~~~  200 (223)
T TIGR03771       184 VLL-NGRVIA-DGTPQQLQ  200 (223)
T ss_pred             EEE-CCEEEe-ecCHHHhc
Confidence            999 799874 55555543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.98  E-value=5.6e-32  Score=210.39  Aligned_cols=156  Identities=28%  Similarity=0.438  Sum_probs=131.6

Q ss_pred             cccCcccCCceeEEecC-------CeEEEEEecCCCCCCCccCCHHH---HHHHhcCCCHH----HHHHHHhhCCCCccc
Q psy11928          2 YAHCDLQPQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAE---YLQRLFNLPYE----KARKQLGTFGLAGHA   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~---~~~~~~~~~~~----~~~~~l~~~~l~~~~   67 (184)
                      .|.|+++|++|+|.+++       +.+|||+|.+..  +.+.+++.+   |+....+++++    ++..+|+++++....
T Consensus        47 mILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERG--Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~  124 (300)
T COG4152          47 MILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG--LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKK  124 (300)
T ss_pred             HHhccCCccCceEEEcCcchhhhhhhhcccChhhhc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccc
Confidence            47899999999999986       357999999863  666666655   44445566543    456789999998777


Q ss_pred             ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      . +++.+||.|++||+++..+++++|+++|||||||||||.+.+.+.+.+.+   .|.|||++||.++.++++||++++|
T Consensus       125 ~-~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL  203 (300)
T COG4152         125 T-KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML  203 (300)
T ss_pred             c-chHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee
Confidence            5 58999999999999999999999999999999999999999999998865   4789999999999999999999999


Q ss_pred             eCCeEEEecCChhHHHH
Q psy11928        145 ENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       145 ~~g~i~~~~~~~~~~~~  161 (184)
                      ++|+.+. .|+....++
T Consensus       204 ~kG~~V~-~G~v~~ir~  219 (300)
T COG4152         204 KKGQTVL-YGTVEDIRR  219 (300)
T ss_pred             cCCceEE-eccHHHHHH
Confidence            9999864 666666555

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=2.1e-31  Score=215.82  Aligned_cols=156  Identities=24%  Similarity=0.329  Sum_probs=122.1

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++               +..|+|+||++...+.. .++.+++..   ..+...    +.+.++++
T Consensus        52 ~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~  130 (280)
T PRK13649         52 LLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLA  130 (280)
T ss_pred             HHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            68999999999998653               13599999986211222 355555432   122222    24567888


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.++   +.|||+||||++++..
T Consensus       131 ~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~  210 (280)
T PRK13649        131 LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVAN  210 (280)
T ss_pred             HcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence            9999743224589999999999999999999999999999999999999999999998754   6799999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +||++++|++|++.. .++.+++
T Consensus       211 ~~d~i~~l~~G~i~~-~g~~~~~  232 (280)
T PRK13649        211 YADFVYVLEKGKLVL-SGKPKDI  232 (280)
T ss_pred             hCCEEEEEECCEEEE-eCCHHHH
Confidence            999999999999875 4554443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=5e-31  Score=234.72  Aligned_cols=157  Identities=23%  Similarity=0.412  Sum_probs=127.6

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHH--------------------------Hh----c---C
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQ--------------------------RL----F---N   48 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~--------------------------~~----~---~   48 (184)
                      +|+|+++|++|+|.+.+...+||++|++.. .  ..+...++.                          ..    .   .
T Consensus        46 iL~G~~~pd~G~I~~~~~~~i~~~~q~~~~-~--~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (638)
T PRK10636         46 LLKNEISADGGSYTFPGNWQLAWVNQETPA-L--PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDA  122 (638)
T ss_pred             HHhCCCCCCCceEEecCCCEEEEEecCCCC-C--CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Confidence            689999999999998877779999996421 1  112111110                          00    0   0


Q ss_pred             -CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEE
Q psy11928         49 -LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIV  127 (184)
Q Consensus        49 -~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiiv  127 (184)
                       ....++.++++.+|+.....++++++|||||||||+||+||+.+|++|||||||||||+.++.++.++|.++++|||+|
T Consensus       123 ~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviiv  202 (638)
T PRK10636        123 WTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILI  202 (638)
T ss_pred             cchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEE
Confidence             0124577889999997322345899999999999999999999999999999999999999999999999998999999


Q ss_pred             ecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        128 SHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       128 sHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      |||++++..+|+++++|++|++..+.|+++.|..
T Consensus       203 sHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~  236 (638)
T PRK10636        203 SHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV  236 (638)
T ss_pred             eCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence            9999999999999999999999888898887754

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.9e-31  Score=214.66  Aligned_cols=154  Identities=22%  Similarity=0.247  Sum_probs=123.7

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc----C----C---CHHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF----N----L---PYEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~----~---~~~~~~~~l~   59 (184)
                      .|+|+++|++|+|.+++           +..++|+||++.  +....++.+++....    .    .   ..+++.++++
T Consensus        56 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T PRK10575         56 MLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS  133 (265)
T ss_pred             HHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHH
Confidence            58999999999998764           235999999863  333456655543210    0    1   1235678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+++....+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++||+++++.
T Consensus       134 ~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~  212 (265)
T PRK10575        134 LVGLKPLAH-RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA  212 (265)
T ss_pred             HcCCHHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999976554 589999999999999999999999999999999999999999999988653    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||++++|++|+++. .++.+++
T Consensus       213 ~~~d~i~~l~~G~i~~-~~~~~~~  235 (265)
T PRK10575        213 RYCDYLVALRGGEMIA-QGTPAEL  235 (265)
T ss_pred             HhCCEEEEEECCeEEE-ecCHHHh
Confidence            9999999999999975 4555544

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.97  E-value=1.3e-31  Score=208.74  Aligned_cols=145  Identities=26%  Similarity=0.376  Sum_probs=118.4

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++             +..++|++|++.  +....++.+++..    ..+..    .+++.++++.
T Consensus        45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~  122 (213)
T cd03262          45 CINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN--LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEK  122 (213)
T ss_pred             HHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            58999999999998653             235999999874  3334455555432    11222    2346778999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~  137 (184)
                      +|+....+ +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|.+.   +.|||++|||++++..+
T Consensus       123 ~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~  201 (213)
T cd03262         123 VGLADKAD-AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV  201 (213)
T ss_pred             cCCHhHhh-hCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            99976554 589999999999999999999999999999999999999999999999754   67999999999999999


Q ss_pred             cCeEEEEeCCeE
Q psy11928        138 ECTLWVIENQTI  149 (184)
Q Consensus       138 ~~~i~~l~~g~i  149 (184)
                      ||++++|++|++
T Consensus       202 ~d~i~~l~~g~i  213 (213)
T cd03262         202 ADRVIFMDDGRI  213 (213)
T ss_pred             CCEEEEEeCCcC
Confidence            999999999864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.97  E-value=4.2e-31  Score=208.48  Aligned_cols=156  Identities=22%  Similarity=0.257  Sum_probs=122.1

Q ss_pred             cccCcccC----CceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C---HHHHHHHHhhC
Q psy11928          2 YAHCDLQP----QQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P---YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p----~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~---~~~~~~~l~~~   61 (184)
                      +|+|+.+|    ++|+|.+++         +..++|++|++...+....++.+++..   ..+. .   .+++.++++.+
T Consensus        31 ~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  110 (230)
T TIGR02770        31 AILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV  110 (230)
T ss_pred             HHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHc
Confidence            58999999    899998764         247999999973112333444433221   1111 1   23477889999


Q ss_pred             CCC---cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHH
Q psy11928         62 GLA---GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLI  134 (184)
Q Consensus        62 ~l~---~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~  134 (184)
                      ++.   ... ++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++||+++++
T Consensus       111 ~l~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~  189 (230)
T TIGR02770       111 GLPDPEEVL-KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVV  189 (230)
T ss_pred             CCCchHHHH-hCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            997   234 3589999999999999999999999999999999999999999999888653    67999999999999


Q ss_pred             HhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        135 RDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       135 ~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ..+||++++|++|++.. .++.+++
T Consensus       190 ~~~~d~i~~l~~G~i~~-~~~~~~~  213 (230)
T TIGR02770       190 ARIADEVAVMDDGRIVE-RGTVKEI  213 (230)
T ss_pred             HHhCCEEEEEECCEEEE-eCCHHHH
Confidence            99999999999999975 4555444

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.1e-31  Score=215.94  Aligned_cols=153  Identities=26%  Similarity=0.311  Sum_probs=122.1

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l   63 (184)
                      .|+|+++|++|+|.+++           +..+||+||++. ......++.+++..   ..+...    +++.++++.+|+
T Consensus        52 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL  130 (279)
T PRK13650         52 LIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGM  130 (279)
T ss_pred             HHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC
Confidence            58999999999998754           236999999863 12233455555432   112222    356788999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~  139 (184)
                      .+..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.+++.    +.|||+||||++++. .||
T Consensus       131 ~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~d  208 (279)
T PRK13650        131 QDFKE-REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSD  208 (279)
T ss_pred             HhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCC
Confidence            86554 589999999999999999999999999999999999999999999988643    679999999999995 799


Q ss_pred             eEEEEeCCeEEEecCChhH
Q psy11928        140 TLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~  158 (184)
                      ++++|++|++.. .++.++
T Consensus       209 ri~~l~~G~i~~-~g~~~~  226 (279)
T PRK13650        209 RVLVMKNGQVES-TSTPRE  226 (279)
T ss_pred             EEEEEECCEEEE-ECCHHH
Confidence            999999999875 455444

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.97  E-value=5e-31  Score=211.47  Aligned_cols=154  Identities=27%  Similarity=0.313  Sum_probs=124.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC----CHHHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL----PYEKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~----~~~~~~~~l~~~~l   63 (184)
                      +|+|+++|++|+|.+++           +..++|+||++.  +....++.+++...   ...    ...++.++++.+|+
T Consensus        47 ~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l  124 (258)
T PRK13548         47 ALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDL  124 (258)
T ss_pred             HHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCC
Confidence            58999999999998754           235999999864  33445666665431   111    12346788999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTL------NAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL  133 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~------~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~  133 (184)
                      ....+ +++.+|||||||||+|||||+      .+|+++||||||+|||+.++..+.+.|+++    +.|||++|||+++
T Consensus       125 ~~~~~-~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  203 (258)
T PRK13548        125 AHLAG-RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL  203 (258)
T ss_pred             HhHhc-CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            76554 589999999999999999999      599999999999999999999999988643    5799999999999


Q ss_pred             HHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        134 IRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +..+||++++|++|++.. .++.+++
T Consensus       204 ~~~~~d~i~~l~~G~i~~-~~~~~~~  228 (258)
T PRK13548        204 AARYADRIVLLHQGRLVA-DGTPAEV  228 (258)
T ss_pred             HHHhcCEEEEEECCEEEe-eCCHHHH
Confidence            999999999999999874 5555554

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.2e-31  Score=211.72  Aligned_cols=154  Identities=25%  Similarity=0.331  Sum_probs=123.6

Q ss_pred             cccCcccCCceeEEecC------------------------CeEEEEEecCCCCCCCccCCHHHHHHHh----cCCC---
Q psy11928          2 YAHCDLQPQQGELKKNH------------------------RLRIGRFDQHSGEHLTAEETPAEYLQRL----FNLP---   50 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~----~~~~---   50 (184)
                      +|+|+++|++|+|.+++                        ++.++|++|++.  +....++.+++...    .+..   
T Consensus        45 ~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~  122 (252)
T TIGR03005        45 ILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFN--LFPHKTVLDNVTEAPVLVLGMARAE  122 (252)
T ss_pred             HHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcc--cCCCCcHHHHHHHHHHHhcCCCHHH
Confidence            68999999999997643                        235999999864  33445555554321    1121   


Q ss_pred             -HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEE
Q psy11928         51 -YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVI  125 (184)
Q Consensus        51 -~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tii  125 (184)
                       .+++.++++.+|+....+ +++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+.    +.|+|
T Consensus       123 ~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii  201 (252)
T TIGR03005       123 AEKRAMELLDMVGLADKAD-HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML  201 (252)
T ss_pred             HHHHHHHHHHHcCChhHhh-cChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence             234678899999976554 589999999999999999999999999999999999999999999988653    67999


Q ss_pred             EEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       126 ivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|||++++..+||++++|++|++++ .++.+++
T Consensus       202 ivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  234 (252)
T TIGR03005       202 LVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEI  234 (252)
T ss_pred             EEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence            99999999999999999999999975 4555444

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4e-31  Score=211.52  Aligned_cols=154  Identities=25%  Similarity=0.266  Sum_probs=123.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cCC----CHHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FNL----PYEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~~----~~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++           +..++|+||++.  +....++.+++...       +..    ...++.++++
T Consensus        47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (255)
T PRK11231         47 CFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHL--TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME  124 (255)
T ss_pred             HHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCC--CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHH
Confidence            68999999999998754           235999999864  33344555554321       111    1235677899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+|+....+ +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|.+.   +.|||++|||++++.+
T Consensus       125 ~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~  203 (255)
T PRK11231        125 QTRINHLAD-RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASR  203 (255)
T ss_pred             HcCCHHHHc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            999976554 589999999999999999999999999999999999999999999998754   6799999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +||+++++++|++.. .++.+++
T Consensus       204 ~~d~i~~l~~G~i~~-~~~~~~~  225 (255)
T PRK11231        204 YCDHLVVLANGHVMA-QGTPEEV  225 (255)
T ss_pred             hcCEEEEEECCeEEE-EcCHHHh
Confidence            999999999999874 4555544

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.5e-31  Score=212.46  Aligned_cols=154  Identities=23%  Similarity=0.262  Sum_probs=124.2

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--c------CCC---HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--F------NLP---YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~------~~~---~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++           +..++|+||++.  +....++.+++...  .      ...   .+++.++++
T Consensus        52 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  129 (265)
T PRK10253         52 TLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNAT--TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ  129 (265)
T ss_pred             HHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCc--CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHH
Confidence            68999999999998754           235999999874  33345555554321  0      011   235678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+....+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++|||++++.
T Consensus       130 ~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~  208 (265)
T PRK10253        130 ATGITHLAD-QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQAC  208 (265)
T ss_pred             HcCCHHHhc-CCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999976554 589999999999999999999999999999999999999999999988653    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||++++|++|++.. .++..++
T Consensus       209 ~~~d~i~~l~~G~i~~-~g~~~~~  231 (265)
T PRK10253        209 RYASHLIALREGKIVA-QGAPKEI  231 (265)
T ss_pred             HhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999875 5555554

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.5e-31  Score=212.01  Aligned_cols=154  Identities=22%  Similarity=0.269  Sum_probs=124.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cCC-C---HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FNL-P---YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~~-~---~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++           ++.++|++|++.  +....++.+++...       ... .   .+++.++++
T Consensus        46 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (256)
T TIGR03873        46 LLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALA  123 (256)
T ss_pred             HHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHH
Confidence            58999999999998754           235999999873  23345565554321       111 1   235677899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+++.+..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.   +.|||++|||++++..
T Consensus       124 ~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~  202 (256)
T TIGR03873       124 RTELSHLAD-RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAAS  202 (256)
T ss_pred             HcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            999976554 589999999999999999999999999999999999999999999999765   6799999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +||++++|++|+++. .++.+++
T Consensus       203 ~~d~i~~l~~G~i~~-~g~~~~~  224 (256)
T TIGR03873       203 YCDHVVVLDGGRVVA-AGPPREV  224 (256)
T ss_pred             hCCEEEEEeCCCEEE-ecCHHHh
Confidence            999999999999975 5665554

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.2e-31  Score=214.57  Aligned_cols=155  Identities=23%  Similarity=0.304  Sum_probs=124.1

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~   61 (184)
                      +|+|+.+|++|+|.+++             +..+||+||++...+ ...++.+++..   ..+.+    .+++.++++.+
T Consensus        51 ~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~  129 (283)
T PRK13636         51 NLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT  129 (283)
T ss_pred             HHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC
Confidence            58999999999998754             135999999873112 23455555432   12222    23467789999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~  137 (184)
                      |+....+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+.    +.|||++|||++++..+
T Consensus       130 gL~~~~~-~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~  208 (283)
T PRK13636        130 GIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLY  208 (283)
T ss_pred             CChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence            9986654 589999999999999999999999999999999999999999998888653    67999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|+++. .++.+++
T Consensus       209 ~dri~~l~~G~i~~-~g~~~~~  229 (283)
T PRK13636        209 CDNVFVMKEGRVIL-QGNPKEV  229 (283)
T ss_pred             CCEEEEEECCEEEE-eCCHHHH
Confidence            99999999999975 5655543

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.2e-31  Score=213.23  Aligned_cols=155  Identities=24%  Similarity=0.281  Sum_probs=121.6

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~   61 (184)
                      +|+|+++|++|+|.+++             +..+||+||++...+ ...++.+++..   ..+...    +++.++++.+
T Consensus        46 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  124 (271)
T PRK13638         46 NLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI-FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLV  124 (271)
T ss_pred             HHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            58999999999997653             135999999863111 12233333321   122222    3456789999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~  138 (184)
                      |+.+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+.   +.|||+||||++++..+|
T Consensus       125 ~l~~~~~-~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  203 (271)
T PRK13638        125 DAQHFRH-QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEIS  203 (271)
T ss_pred             CCHhHhc-CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence            9976554 589999999999999999999999999999999999999999999998764   679999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++|++|+++. .++.+++
T Consensus       204 d~i~~l~~G~i~~-~g~~~~~  223 (271)
T PRK13638        204 DAVYVLRQGQILT-HGAPGEV  223 (271)
T ss_pred             CEEEEEECCEEEE-eCCHHHH
Confidence            9999999999875 5555443

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.4e-31  Score=214.48  Aligned_cols=155  Identities=25%  Similarity=0.359  Sum_probs=124.1

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l   63 (184)
                      +|+|+++|++|+|.+++           +..+||+||++...+. ..++.+++..   ..+...    +++.++++.+|+
T Consensus        49 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l  127 (277)
T PRK13652         49 HFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL  127 (277)
T ss_pred             HHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            58999999999998754           1359999998731222 3455555432   112222    346788999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~  139 (184)
                      .+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+++.    +.|||++|||++++...||
T Consensus       128 ~~~~~-~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~d  206 (277)
T PRK13652        128 EELRD-RVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMAD  206 (277)
T ss_pred             hhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence            86554 589999999999999999999999999999999999999999999988653    6799999999999999999


Q ss_pred             eEEEEeCCeEEEecCChhHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++|++|+++. .++.+++
T Consensus       207 rv~~l~~G~i~~-~g~~~~~  225 (277)
T PRK13652        207 YIYVMDKGRIVA-YGTVEEI  225 (277)
T ss_pred             EEEEEECCeEEE-ECCHHHH
Confidence            999999999875 5665554

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=1.3e-31  Score=202.97  Aligned_cols=158  Identities=24%  Similarity=0.328  Sum_probs=127.7

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCC-C----HHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNL-P----YEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~-~----~~~~~~~l~~~~   62 (184)
                      .++|+.+|++|+|.++.            +..|||+||+++  ..+++++|+...+....+. .    +.++.++|+.|.
T Consensus        49 mi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~  128 (243)
T COG1137          49 MIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH  128 (243)
T ss_pred             EEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc
Confidence            46899999999998763            457999999986  4466666643333222211 1    234668999999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecCHHHHHhhcC
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN---EYKGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~~  139 (184)
                      +.+..+ ++..+||||||+|+.|||||+.+|+++||||||+|.||.+...+.++++   +.|..|+|+-|+..+...+||
T Consensus       129 i~hlr~-~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~d  207 (243)
T COG1137         129 ITHLRD-SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICD  207 (243)
T ss_pred             hHHHhc-CcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhh
Confidence            987765 5899999999999999999999999999999999999999888777765   457899999999999999999


Q ss_pred             eEEEEeCCeEEEecCChhHHHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      |.+++.+|++.. .|+++++.+
T Consensus       208 RaYIi~~G~vla-~G~p~ei~~  228 (243)
T COG1137         208 RAYIISDGKVLA-EGSPEEIVN  228 (243)
T ss_pred             eEEEEecCeEEe-cCCHHHHhc
Confidence            999999999974 777766543

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.97  E-value=8.5e-31  Score=208.68  Aligned_cols=153  Identities=22%  Similarity=0.240  Sum_probs=122.5

Q ss_pred             cccCcccCC-----ceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcC-CC----HHHHH
Q psy11928          2 YAHCDLQPQ-----QGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFN-LP----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~-~~----~~~~~   55 (184)
                      +|+|+++|+     +|+|.+++             +..++|+||++.  +.. .++.+++..   ..+ ..    .+++.
T Consensus        46 ~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~  122 (247)
T TIGR00972        46 SLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVE  122 (247)
T ss_pred             HHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence            588999998     99998643             235999999874  333 555555432   112 11    23467


Q ss_pred             HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      ++++.+|+.    ...+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++.  +.|||+|||
T Consensus       123 ~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH  201 (247)
T TIGR00972       123 ESLKKAALWDEVKDRLH-DSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH  201 (247)
T ss_pred             HHHHHcCCCcchhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence            789999997    4444 589999999999999999999999999999999999999999999999764  379999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++..+||++++|++|+++. .++.+++
T Consensus       202 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~  230 (247)
T TIGR00972       202 NMQQAARISDRTAFFYDGELVE-YGPTEQI  230 (247)
T ss_pred             CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999975 4555444

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=5.3e-32  Score=202.41  Aligned_cols=153  Identities=30%  Similarity=0.456  Sum_probs=121.2

Q ss_pred             cCcccCCceeEEecC------------------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCH----HH
Q psy11928          4 HCDLQPQQGELKKNH------------------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EK   53 (184)
Q Consensus         4 ~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~----~~   53 (184)
                      .=+.+|+.|.|.+++                        |.+.|+|||+.+  ..++.-+|+.+......+.++    ++
T Consensus        53 N~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~  132 (256)
T COG4598          53 NFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIER  132 (256)
T ss_pred             HhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHH
Confidence            346789999997542                        345899999875  334444444443333333333    45


Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecC
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN---EYKGGVIIVSHD  130 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd  130 (184)
                      ++.+|.++|+.+..+ .+|..|||||+||++|||||+.+|+++|+|||||+|||+-.-++++.+.   +.|.|+++|||.
T Consensus       133 Ae~~L~kVGi~ek~~-~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHE  211 (256)
T COG4598         133 AEKYLAKVGIAEKAD-AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE  211 (256)
T ss_pred             HHHHHHHhCchhhhh-cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence            778999999987665 5899999999999999999999999999999999999998887777665   458999999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      +.|+...++.++.+++|.|.+ .|++++
T Consensus       212 M~FAR~Vss~v~fLh~G~iEE-~G~P~q  238 (256)
T COG4598         212 MGFARDVSSHVIFLHQGKIEE-EGPPEQ  238 (256)
T ss_pred             hhHHHhhhhheEEeecceecc-cCChHH
Confidence            999999999999999999965 566544

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.7e-31  Score=214.32  Aligned_cols=155  Identities=23%  Similarity=0.241  Sum_probs=120.6

Q ss_pred             cccCcccCCceeEEecC----------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH----------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQL   58 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l   58 (184)
                      +|+|+++|++|+|.+++                +..++|++|++...+. ..++.+++..   ..+...    +++.+++
T Consensus        56 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll  134 (289)
T PRK13645         56 LTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELL  134 (289)
T ss_pred             HHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            68999999999997643                2359999998631121 2345554432   112222    3456788


Q ss_pred             hhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928         59 GTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL  133 (184)
Q Consensus        59 ~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~  133 (184)
                      +.+++. ... ++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+.    +.|||+||||+++
T Consensus       135 ~~~~L~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~  213 (289)
T PRK13645        135 KLVQLPEDYV-KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ  213 (289)
T ss_pred             HHcCCChhHh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            999995 344 4589999999999999999999999999999999999999999999988653    6799999999999


Q ss_pred             HHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        134 IRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +..+||++++|++|+++. .++.+++
T Consensus       214 ~~~~~d~i~~l~~G~i~~-~g~~~~~  238 (289)
T PRK13645        214 VLRIADEVIVMHEGKVIS-IGSPFEI  238 (289)
T ss_pred             HHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            999999999999999875 4554443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.97  E-value=5.3e-31  Score=229.43  Aligned_cols=154  Identities=21%  Similarity=0.235  Sum_probs=127.0

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCC---CHHHHHHHHhhCCCCcc
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNL---PYEKARKQLGTFGLAGH   66 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~   66 (184)
                      +|+|+++|++|+|.+++            +..+||+||++.  +....++.+++......   ..+++.++++.+|+...
T Consensus        56 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~  133 (510)
T PRK15439         56 IIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD  133 (510)
T ss_pred             HHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc
Confidence            68999999999998754            135999999874  44556666665432111   13457788999999866


Q ss_pred             cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEE
Q psy11928         67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        67 ~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      .+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++.   +.|||+||||++++..+||++++
T Consensus       134 ~~-~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~  212 (510)
T PRK15439        134 LD-SSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISV  212 (510)
T ss_pred             cc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            54 589999999999999999999999999999999999999999999998754   67999999999999999999999


Q ss_pred             EeCCeEEEecCChhHH
Q psy11928        144 IENQTIEEIDGDFDDY  159 (184)
Q Consensus       144 l~~g~i~~~~~~~~~~  159 (184)
                      |++|++.. .++++++
T Consensus       213 l~~G~i~~-~g~~~~~  227 (510)
T PRK15439        213 MRDGTIAL-SGKTADL  227 (510)
T ss_pred             EECCEEEE-ecChHHc
Confidence            99999975 5666554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.97  E-value=8.9e-31  Score=229.91  Aligned_cols=156  Identities=26%  Similarity=0.422  Sum_probs=126.4

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH----h-------------cCC--C------------
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR----L-------------FNL--P------------   50 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~----~-------------~~~--~------------   50 (184)
                      +|+|+++|++|+|.++....|||++|++.  +....|+.+++..    .             ...  .            
T Consensus        50 ~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (552)
T TIGR03719        50 IMAGVDKEFNGEARPAPGIKVGYLPQEPQ--LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAEL  127 (552)
T ss_pred             HHhCCCCCCCceEEecCCCEEEEEeccCC--CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence            68999999999999877778999999874  2233344443321    0             000  0            


Q ss_pred             ------------HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q psy11928         51 ------------YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN  118 (184)
Q Consensus        51 ------------~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~  118 (184)
                                  ..++.++++.+|+.. .+ +++++|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~-~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~  205 (552)
T TIGR03719       128 QEIIDAADAWDLDRKLEIAMDALRCPP-WD-ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ  205 (552)
T ss_pred             HHHHHhcCcchhHHHHHHHHhhCCCCc-cc-CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHH
Confidence                        123455677888853 33 5899999999999999999999999999999999999999999999999


Q ss_pred             hcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        119 EYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       119 ~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      +++.|||+||||++++..+||++++|++|++..+.|+++++.+
T Consensus       206 ~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~  248 (552)
T TIGR03719       206 EYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE  248 (552)
T ss_pred             hCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence            9888999999999999999999999999998767788776544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.97  E-value=7.4e-31  Score=209.65  Aligned_cols=156  Identities=22%  Similarity=0.270  Sum_probs=120.1

Q ss_pred             cccCcccCCceeEEecCC--------------------eEEEEEecCCCCCCCccCCHHHHHH----HhcC----CCHHH
Q psy11928          2 YAHCDLQPQQGELKKNHR--------------------LRIGRFDQHSGEHLTAEETPAEYLQ----RLFN----LPYEK   53 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~--------------------~~ig~v~q~~~~~l~~~~~~~~~~~----~~~~----~~~~~   53 (184)
                      +|+|+.+|++|+|.+++.                    ..++|++|++...+....++.+.+.    ....    ...++
T Consensus        48 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  127 (253)
T TIGR02323        48 CLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAA  127 (253)
T ss_pred             HHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHH
Confidence            689999999999987531                    2489999986422222223222221    1111    11245


Q ss_pred             HHHHHhhCCCCc-ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEe
Q psy11928         54 ARKQLGTFGLAG-HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS  128 (184)
Q Consensus        54 ~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivs  128 (184)
                      +.++++.+|+.. ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.+++.+.+.+.+.    +.|||+||
T Consensus       128 ~~~~l~~l~l~~~~~~-~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vs  206 (253)
T TIGR02323       128 AHDWLEEVEIDPTRID-DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT  206 (253)
T ss_pred             HHHHHHHcCCChhhhh-cCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            678899999963 444 589999999999999999999999999999999999999999999988643    67999999


Q ss_pred             cCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        129 HDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |+++++..+||++++|++|+++. .++.+++
T Consensus       207 H~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~  236 (253)
T TIGR02323       207 HDLGVARLLAQRLLVMQQGRVVE-SGLTDQV  236 (253)
T ss_pred             CCHHHHHHhcCEEEEEECCEEEE-ECCHHHH
Confidence            99999999999999999999975 4444433

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=7.5e-32  Score=198.70  Aligned_cols=153  Identities=32%  Similarity=0.394  Sum_probs=125.0

Q ss_pred             CcccCCceeEEec-----------------CCeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCH----HHHHHHHhhC
Q psy11928          5 CDLQPQQGELKKN-----------------HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EKARKQLGTF   61 (184)
Q Consensus         5 G~~~p~~G~i~~~-----------------~~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~   61 (184)
                      =+..|.+|+..+.                 .|+++|+|||.+.  +.+++-+|+.+......+.++    .++.++++++
T Consensus        50 lle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrl  129 (242)
T COG4161          50 LLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRL  129 (242)
T ss_pred             HHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHh
Confidence            3567889988642                 1567999999875  555555555554444444443    4567899999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~  138 (184)
                      .+.++.+ +.|-.|||||+|||+|||||+.+|++|++||||++|||+-..++.++|+++   |.|=++|||..+++.+.+
T Consensus       130 rl~~~ad-r~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~a  208 (242)
T COG4161         130 RLKPYAD-RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTA  208 (242)
T ss_pred             ccccccc-cCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhh
Confidence            9998776 589999999999999999999999999999999999999999999999876   679999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+++.|++|+|++ .|+.+-+
T Consensus       209 s~vvyme~g~ive-~g~a~~f  228 (242)
T COG4161         209 SRVVYMENGHIVE-QGDASCF  228 (242)
T ss_pred             hheEeeecCeeEe-ecchhhc
Confidence            9999999999987 4444333

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.97  E-value=8.8e-31  Score=227.59  Aligned_cols=147  Identities=23%  Similarity=0.236  Sum_probs=121.1

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c---C-CC----HHHHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F---N-LP----YEKARKQL   58 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~---~-~~----~~~~~~~l   58 (184)
                      +|+|+++|++|+|.+++            +..+||+||++.  +....|+.+++...   .   . ..    .+++.+++
T Consensus        49 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (501)
T PRK10762         49 VLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELN--LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLL  126 (501)
T ss_pred             HHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchh--ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHH
Confidence            68999999999998753            235999999863  34455666554321   0   1 11    23567889


Q ss_pred             hhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928         59 GTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR  135 (184)
Q Consensus        59 ~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~  135 (184)
                      +.+|+.+..+ +++++|||||||||+|||||+.+|++|||||||++||+.++.++.+.+.+.   +.|||+||||++++.
T Consensus       127 ~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~  205 (501)
T PRK10762        127 ARLNLRFSSD-KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIF  205 (501)
T ss_pred             HHcCCCCCcc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            9999986654 589999999999999999999999999999999999999999999888654   679999999999999


Q ss_pred             hhcCeEEEEeCCeEEE
Q psy11928        136 DTECTLWVIENQTIEE  151 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~  151 (184)
                      .+||++++|++|+++.
T Consensus       206 ~~~d~i~~l~~G~i~~  221 (501)
T PRK10762        206 EICDDVTVFRDGQFIA  221 (501)
T ss_pred             HhCCEEEEEeCCEEEE
Confidence            9999999999999865

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.97  E-value=1.1e-30  Score=207.15  Aligned_cols=154  Identities=21%  Similarity=0.294  Sum_probs=119.3

Q ss_pred             cccCcc--cCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcC-------CC----HHH
Q psy11928          2 YAHCDL--QPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFN-------LP----YEK   53 (184)
Q Consensus         2 ~~~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~-------~~----~~~   53 (184)
                      +|+|+.  +|++|+|.+++            +..++|++|++.  +....++.+++..   ...       ..    .++
T Consensus        45 ~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (243)
T TIGR01978        45 TIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKL  122 (243)
T ss_pred             HHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHH
Confidence            578985  79999998754            123899999874  3344455444321   100       11    234


Q ss_pred             HHHHHhhCCCCccccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928         54 ARKQLGTFGLAGHAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH  129 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH  129 (184)
                      +.++++.+|+.....++++. +||||||||++|||||+.+|+++||||||++||+.++..+.+.|.+.   +.|||+|||
T Consensus       123 ~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH  202 (243)
T TIGR01978       123 LKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH  202 (243)
T ss_pred             HHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEe
Confidence            67789999997433334676 59999999999999999999999999999999999999999999765   579999999


Q ss_pred             CHHHHHhh-cCeEEEEeCCeEEEecCChhH
Q psy11928        130 DERLIRDT-ECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       130 d~~~~~~~-~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      |++++..+ ||++++|++|++.. .++.+.
T Consensus       203 ~~~~~~~~~~d~i~~l~~G~i~~-~g~~~~  231 (243)
T TIGR01978       203 YQRLLNYIKPDYVHVLLDGRIVK-SGDVEL  231 (243)
T ss_pred             cHHHHHhhcCCeEEEEeCCEEEE-ecCHHH
Confidence            99999998 89999999999864 555543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.97  E-value=1.2e-30  Score=206.60  Aligned_cols=154  Identities=21%  Similarity=0.264  Sum_probs=123.8

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         +..++|+||++.  +....++.+++..   .....    .+++.++++.+|+..
T Consensus        44 ~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  121 (235)
T cd03299          44 TIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYA--LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH  121 (235)
T ss_pred             HHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence            68999999999998754         346999999864  3333455554432   11111    234677899999976


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||+||++||||++.+|++++|||||+|||+.+++++.+.+++.    +.|+|++||+++++..+||++
T Consensus       122 ~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i  200 (235)
T cd03299         122 LLN-RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKV  200 (235)
T ss_pred             HHh-cCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence            665 589999999999999999999999999999999999999999999988753    679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|++++ .++.+..
T Consensus       201 ~~l~~G~i~~-~~~~~~~  217 (235)
T cd03299         201 AIMLNGKLIQ-VGKPEEV  217 (235)
T ss_pred             EEEECCEEEE-ecCHHHH
Confidence            9999999975 4554433

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.97  E-value=8.5e-31  Score=228.56  Aligned_cols=155  Identities=28%  Similarity=0.363  Sum_probs=123.5

Q ss_pred             cccCcccCCceeEEec-C-----------------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCC----HHHHHHH
Q psy11928          2 YAHCDLQPQQGELKKN-H-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLP----YEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~-~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~----~~~~~~~   57 (184)
                      +|+|+++|++|+|.++ +                 +.++||+||++.  +....++.+++....  ...    .+++.++
T Consensus       329 ~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~  406 (520)
T TIGR03269       329 IIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAVIT  406 (520)
T ss_pred             HHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            5899999999999873 2                 135999999863  344556666553211  111    2346778


Q ss_pred             HhhCCCCcc----cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11928         58 LGTFGLAGH----AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSH  129 (184)
Q Consensus        58 l~~~~l~~~----~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsH  129 (184)
                      ++.+|+...    ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.+    .+.|||+|||
T Consensus       407 l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH  486 (520)
T TIGR03269       407 LKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH  486 (520)
T ss_pred             HHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence            999999741    23468999999999999999999999999999999999999999999999854    4689999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++..+||++++|++|+++. .++.++.
T Consensus       487 d~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  515 (520)
T TIGR03269       487 DMDFVLDVCDRAALMRDGKIVK-IGDPEEI  515 (520)
T ss_pred             CHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            9999999999999999999865 4555444

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7.9e-31  Score=212.13  Aligned_cols=155  Identities=26%  Similarity=0.384  Sum_probs=124.1

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~   61 (184)
                      +|+|+++|++|+|.+++             +..|+|+||++...+. ..++.+++..   ..+..    .+++.++++.+
T Consensus        47 ~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~  125 (275)
T PRK13639         47 HFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAV  125 (275)
T ss_pred             HHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence            58999999999997653             2359999998631121 2355555432   11222    23567889999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~  138 (184)
                      |+.+..+ +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.+.++   +.|||++|||++++..+|
T Consensus       126 ~L~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~  204 (275)
T PRK13639        126 GMEGFEN-KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYA  204 (275)
T ss_pred             CCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence            9986654 589999999999999999999999999999999999999999999999764   679999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++|++|+++. .++.+++
T Consensus       205 d~i~~l~~G~i~~-~g~~~~~  224 (275)
T PRK13639        205 DKVYVMSDGKIIK-EGTPKEV  224 (275)
T ss_pred             CEEEEEECCEEEE-eCCHHHH
Confidence            9999999999875 5555544

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.97  E-value=2.3e-30  Score=207.10  Aligned_cols=157  Identities=21%  Similarity=0.259  Sum_probs=122.3

Q ss_pred             cccCcccC----CceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC--CHHHHHHHHhhCCC
Q psy11928          2 YAHCDLQP----QQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL--PYEKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p----~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l   63 (184)
                      +|+|+.+|    ++|+|.+++         ++.++|+||++...+.+..++.++...   ..+.  ..+++.++++.+++
T Consensus        48 ~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  127 (254)
T PRK10418         48 AALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL  127 (254)
T ss_pred             HHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCC
Confidence            68999999    999998754         246999999863112233344333221   1121  23467888999999


Q ss_pred             Ccc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928         64 AGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        64 ~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~  137 (184)
                      ...  ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++.    +.|||++||+++++..+
T Consensus       128 ~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~  207 (254)
T PRK10418        128 ENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARL  207 (254)
T ss_pred             CChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence            752  223589999999999999999999999999999999999999999999888653    67999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||+++++++|++.. .++.+++
T Consensus       208 ~d~v~~l~~G~i~~-~~~~~~~  228 (254)
T PRK10418        208 ADDVAVMSHGRIVE-QGDVETL  228 (254)
T ss_pred             CCEEEEEECCEEEE-ecCHHHH
Confidence            99999999999975 4555444

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.97  E-value=2.3e-30  Score=206.35  Aligned_cols=144  Identities=22%  Similarity=0.271  Sum_probs=117.5

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG   78 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG   78 (184)
                      +|+|+++|++|+|.+++. .++|++|++.  .....++.+++...   .........++++.+++....+ +++++||||
T Consensus        44 ~L~G~~~p~~G~i~~~g~-~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgG  119 (246)
T cd03237          44 MLAGVLKPDEGDIEIELD-TVSYKPQYIK--ADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-REVPELSGG  119 (246)
T ss_pred             HHhCCCcCCCCeEEECCc-eEEEeccccc--CCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-CChhhCCHH
Confidence            589999999999998764 7999999864  22234555554321   1111234567899999976554 589999999


Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q psy11928         79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTI  149 (184)
Q Consensus        79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i  149 (184)
                      |||||+|||||+.+|+++||||||++||+.++..+.+.|+++    +.|||+||||++++..+||++++++++..
T Consensus       120 e~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~  194 (246)
T cd03237         120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS  194 (246)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence            999999999999999999999999999999999999988764    68999999999999999999999976543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.6e-31  Score=229.23  Aligned_cols=150  Identities=18%  Similarity=0.237  Sum_probs=121.0

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHHhc-----------CC-C----HH
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQRLF-----------NL-P----YE   52 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~~~-----------~~-~----~~   52 (184)
                      +|+|+.+|++|+|.+++            ++.+||+||++. ..+....++.+++....           +. .    .+
T Consensus       308 ~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  387 (510)
T PRK09700        308 CLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQR  387 (510)
T ss_pred             HHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHH
Confidence            58999999999998754            135999999842 23444556665543210           10 1    13


Q ss_pred             HHHHHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEe
Q psy11928         53 KARKQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVS  128 (184)
Q Consensus        53 ~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivs  128 (184)
                      ++.++++.+|+. +..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++   +.|||+||
T Consensus       388 ~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vs  466 (510)
T PRK09700        388 TAENQRELLALKCHSVN-QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS  466 (510)
T ss_pred             HHHHHHHhcCCCCCCcc-CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            467889999996 4454 589999999999999999999999999999999999999999999998754   78999999


Q ss_pred             cCHHHHHhhcCeEEEEeCCeEEEe
Q psy11928        129 HDERLIRDTECTLWVIENQTIEEI  152 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~g~i~~~  152 (184)
                      ||++++..+||+++++++|++...
T Consensus       467 Hd~~~~~~~~d~i~~l~~G~i~~~  490 (510)
T PRK09700        467 SELPEIITVCDRIAVFCEGRLTQI  490 (510)
T ss_pred             CCHHHHHhhCCEEEEEECCEEEEE
Confidence            999999999999999999998653

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.97  E-value=1.3e-30  Score=206.45  Aligned_cols=148  Identities=24%  Similarity=0.335  Sum_probs=118.1

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          +..++|++|+.. .+....++.+++.   ...+...    +++.++++.+|+.
T Consensus        66 ~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~  144 (236)
T cd03267          66 ILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT-QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE  144 (236)
T ss_pred             HHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcc-ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence            58999999999998753          236899985421 2333445555432   1222222    3456788999997


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~  140 (184)
                      +..+ +++.+||||||||++||+|++.+|+++||||||++||+.++..+.+.|.++    +.|||+|||+++++..+||+
T Consensus       145 ~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~  223 (236)
T cd03267         145 ELLD-TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR  223 (236)
T ss_pred             hHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence            6554 589999999999999999999999999999999999999999999999764    57999999999999999999


Q ss_pred             EEEEeCCeEEE
Q psy11928        141 LWVIENQTIEE  151 (184)
Q Consensus       141 i~~l~~g~i~~  151 (184)
                      ++++++|++..
T Consensus       224 i~~l~~G~i~~  234 (236)
T cd03267         224 VLVIDKGRLLY  234 (236)
T ss_pred             EEEEeCCEEEe
Confidence            99999999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1e-30  Score=211.39  Aligned_cols=153  Identities=26%  Similarity=0.341  Sum_probs=121.0

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~   62 (184)
                      +|+|+++|++|+|.+++            +..+||+||++...+ ...++.+++..   .....    .+++.++++.+|
T Consensus        47 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g  125 (274)
T PRK13644         47 HLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIG  125 (274)
T ss_pred             HHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC
Confidence            58999999999997653            235999999873111 23455555432   11222    234677899999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~  139 (184)
                      +....+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.++++   +.|||++|||++++. .||
T Consensus       126 l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d  203 (274)
T PRK13644        126 LEKYRH-RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DAD  203 (274)
T ss_pred             CHHHhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCC
Confidence            986655 589999999999999999999999999999999999999999999998653   679999999999995 599


Q ss_pred             eEEEEeCCeEEEecCChhH
Q psy11928        140 TLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~  158 (184)
                      +++++++|+++. .++.++
T Consensus       204 ~v~~l~~G~i~~-~g~~~~  221 (274)
T PRK13644        204 RIIVMDRGKIVL-EGEPEN  221 (274)
T ss_pred             EEEEEECCEEEE-ECCHHH
Confidence            999999999875 455444

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.1e-30  Score=211.62  Aligned_cols=153  Identities=25%  Similarity=0.337  Sum_probs=122.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l   63 (184)
                      +|+|+.+|++|+|.+++           ++.+||+||++. .+....++.+++..   ..+...    +++.++++.+|+
T Consensus        52 ~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL  130 (279)
T PRK13635         52 LLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGM  130 (279)
T ss_pred             HHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999998754           236999999862 11223455555432   112222    346788999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~  139 (184)
                      ..... +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.+.    +.|||++|||++++.. ||
T Consensus       131 ~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d  208 (279)
T PRK13635        131 EDFLN-REPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-AD  208 (279)
T ss_pred             hhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CC
Confidence            86665 589999999999999999999999999999999999999999999998753    6799999999999975 99


Q ss_pred             eEEEEeCCeEEEecCChhH
Q psy11928        140 TLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~  158 (184)
                      +++++++|++.. .++.++
T Consensus       209 ~i~~l~~G~i~~-~g~~~~  226 (279)
T PRK13635        209 RVIVMNKGEILE-EGTPEE  226 (279)
T ss_pred             EEEEEECCEEEE-ECCHHH
Confidence            999999999865 455443

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.4e-31  Score=204.57  Aligned_cols=134  Identities=24%  Similarity=0.269  Sum_probs=106.1

Q ss_pred             CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCCCCcc---cccccccCCChhHHHHHHHHHH
Q psy11928         19 RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFGLAGH---AHTIKMKDLSGGQKARVALAEL   88 (184)
Q Consensus        19 ~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~lara   88 (184)
                      |++||+|||.|+|+  + +++++++.   ..++...    +.+++.|+...|.+.   ..++....||||||||++||||
T Consensus        87 Rr~vGMVFQkPnPF--p-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa  163 (253)
T COG1117          87 RRRVGMVFQKPNPF--P-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA  163 (253)
T ss_pred             HHHheeeccCCCCC--C-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence            67899999998632  1 44444433   2222221    335566777766532   2234678999999999999999


Q ss_pred             HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCC
Q psy11928         89 TLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTLWVIENQTIEEIDGD  155 (184)
Q Consensus        89 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~  155 (184)
                      |+.+|+|||||||||+|||.+...+.+++.+++  -|||+|||++.-+.+++|+.+++..|++++++.+
T Consensus       164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T  232 (253)
T COG1117         164 LAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT  232 (253)
T ss_pred             HhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence            999999999999999999999999999998874  5999999999999999999999999999987543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.97  E-value=1e-30  Score=215.57  Aligned_cols=149  Identities=24%  Similarity=0.326  Sum_probs=127.0

Q ss_pred             ccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c--CCC----HHHHHHHHh
Q psy11928          3 AHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F--NLP----YEKARKQLG   59 (184)
Q Consensus         3 ~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~--~~~----~~~~~~~l~   59 (184)
                      |.++++++ |+|.+.+              ++++-.|||+|+..+++.+|+.+.+...   +  +.+    .+++.+.|+
T Consensus       333 llrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~  411 (534)
T COG4172         333 LLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALE  411 (534)
T ss_pred             HHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHH
Confidence            45666555 9998653              5679999999988899999987766431   1  122    245778899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~  135 (184)
                      .+|++....+++|.++|||||||++||||++.+|++++||||||+||...+.++.+++++    ++.+-+++|||+..+.
T Consensus       412 EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vvr  491 (534)
T COG4172         412 EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVR  491 (534)
T ss_pred             HcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence            999987766789999999999999999999999999999999999999999999999975    4679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEe
Q psy11928        136 DTECTLWVIENQTIEEI  152 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~  152 (184)
                      .+|+++++|++|+|++.
T Consensus       492 Al~~~viVm~~GkiVE~  508 (534)
T COG4172         492 ALCHRVIVMRDGKIVEQ  508 (534)
T ss_pred             HhhceEEEEeCCEEeee
Confidence            99999999999999984

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.2e-30  Score=205.63  Aligned_cols=155  Identities=23%  Similarity=0.207  Sum_probs=121.3

Q ss_pred             cccCcccC-----CceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC--C----HHHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL--P----YEKARK   56 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~--~----~~~~~~   56 (184)
                      +|+|+.+|     ++|+|.+++           +..+||+||++.  +....++.+++..   ....  .    .+++.+
T Consensus        48 ~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~  125 (250)
T PRK14247         48 VFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRW  125 (250)
T ss_pred             HHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence            57899874     799998653           246999999874  2334555555432   1111  1    234677


Q ss_pred             HHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928         57 QLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~  131 (184)
                      +++.+|+...   ..++++.+||||||||++|||||+.+|+++||||||++||+.++.++.+.|.+.  +.|+|++|||+
T Consensus       126 ~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~  205 (250)
T PRK14247        126 ALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP  205 (250)
T ss_pred             HHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            8999998531   224589999999999999999999999999999999999999999999999764  57999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++..+||++++|++|++.. .++.+++
T Consensus       206 ~~~~~~~d~i~~l~~G~i~~-~g~~~~~  232 (250)
T PRK14247        206 QQAARISDYVAFLYKGQIVE-WGPTREV  232 (250)
T ss_pred             HHHHHhcCEEEEEECCeEEE-ECCHHHH
Confidence            99999999999999999865 4555444

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.97  E-value=9.7e-31  Score=232.43  Aligned_cols=157  Identities=22%  Similarity=0.254  Sum_probs=122.6

Q ss_pred             cccCcccCCceeEEecC-------------------------CeEEEEEecCCCCCCCccCCHHHHHHH---h-cCCC--
Q psy11928          2 YAHCDLQPQQGELKKNH-------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR---L-FNLP--   50 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~-~~~~--   50 (184)
                      .|+|+++|++|+|.+++                         +..|||+||++...+.+..++.+++..   . .+..  
T Consensus        61 ~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~  140 (623)
T PRK10261         61 ALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASRE  140 (623)
T ss_pred             HHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHH
Confidence            58999999999987532                         135999999873123344455554432   1 1222  


Q ss_pred             --HHHHHHHHhhCCCCc--ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----Cc
Q psy11928         51 --YEKARKQLGTFGLAG--HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KG  122 (184)
Q Consensus        51 --~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~  122 (184)
                        .+++.++++.+|+.+  ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++++++    +.
T Consensus       141 ~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~  220 (623)
T PRK10261        141 EAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSM  220 (623)
T ss_pred             HHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCC
Confidence              245778899999963  1234589999999999999999999999999999999999999999999888653    67


Q ss_pred             EEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        123 GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       123 tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |||+||||++++..+||+|++|++|++++ .++..++
T Consensus       221 tvi~itHdl~~~~~~adri~vl~~G~i~~-~g~~~~~  256 (623)
T PRK10261        221 GVIFITHDMGVVAEIADRVLVMYQGEAVE-TGSVEQI  256 (623)
T ss_pred             EEEEEcCCHHHHHHhCCEEEEeeCCeecc-cCCHHHh
Confidence            99999999999999999999999999975 5554443

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.97  E-value=2.2e-30  Score=204.64  Aligned_cols=153  Identities=25%  Similarity=0.312  Sum_probs=123.6

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         +..++|++|++.  +....++.+++...   .+..    .+++.++++.+|+..
T Consensus        45 ~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  122 (232)
T cd03300          45 LIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYA--LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG  122 (232)
T ss_pred             HHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence            58999999999998753         346999999874  33344555554321   1111    235667899999986


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+||+||+||++||||++.+|+++||||||+|||+.++.++.+.+.++    +.|||++||+++++...||++
T Consensus       123 ~~~-~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i  201 (232)
T cd03300         123 YAN-RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI  201 (232)
T ss_pred             hhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE
Confidence            554 589999999999999999999999999999999999999999999988653    679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhH
Q psy11928        142 WVIENQTIEEIDGDFDD  158 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~  158 (184)
                      +++++|++.. .++..+
T Consensus       202 ~~l~~G~~~~-~~~~~~  217 (232)
T cd03300         202 AVMNKGKIQQ-IGTPEE  217 (232)
T ss_pred             EEEECCEEEe-cCCHHH
Confidence            9999999975 444433

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=9.1e-31  Score=207.25  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=121.0

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC--CHHHHHHHHhhC-CC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL--PYEKARKQLGTF-GL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~-~l   63 (184)
                      +|+|+.+|++|+|.+++            +..++|++|++.  +....++.+++...   ...  ..+.+.++++.+ ++
T Consensus        50 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l  127 (237)
T PRK11614         50 TLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR--VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL  127 (237)
T ss_pred             HHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcc--cCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHH
Confidence            58999999999998653            235999999864  33445666554321   111  122355667777 46


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      .+..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++.   +.|||++|||++++..+||+
T Consensus       128 ~~~~~-~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~  206 (237)
T PRK11614        128 HERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR  206 (237)
T ss_pred             HHHHh-CchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCE
Confidence            54444 479999999999999999999999999999999999999999999988653   67999999999999999999


Q ss_pred             EEEEeCCeEEEecCChhHH
Q psy11928        141 LWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       141 i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++|++|+++. .++.++.
T Consensus       207 i~~l~~G~i~~-~~~~~~~  224 (237)
T PRK11614        207 GYVLENGHVVL-EDTGDAL  224 (237)
T ss_pred             EEEEeCCEEEe-eCCHHHH
Confidence            99999999975 5666554

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=1.6e-30  Score=227.31  Aligned_cols=156  Identities=23%  Similarity=0.305  Sum_probs=121.8

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC--CC----HHHHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN--LP----YEKARKQL   58 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~--~~----~~~~~~~l   58 (184)
                      +|+|++ |++|+|.+++              +..+||+||++...+....++.+++...   +.  ..    .+++.+++
T Consensus       331 ~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l  409 (529)
T PRK15134        331 ALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM  409 (529)
T ss_pred             HHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHH
Confidence            578998 5899998754              2359999998621233444555544321   11  11    23567889


Q ss_pred             hhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHH
Q psy11928         59 GTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLI  134 (184)
Q Consensus        59 ~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~  134 (184)
                      +.+|+.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|.+    .+.|||+||||++++
T Consensus       410 ~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~  489 (529)
T PRK15134        410 EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVV  489 (529)
T ss_pred             HHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence            9999963223458999999999999999999999999999999999999999999999874    367999999999999


Q ss_pred             HhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        135 RDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       135 ~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ..+||++++|++|++++ .++.+++
T Consensus       490 ~~~~d~i~~l~~G~i~~-~~~~~~~  513 (529)
T PRK15134        490 RALCHQVIVLRQGEVVE-QGDCERV  513 (529)
T ss_pred             HHhcCeEEEEECCEEEE-EcCHHHH
Confidence            99999999999999975 4554443

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.3e-30  Score=209.89  Aligned_cols=154  Identities=23%  Similarity=0.322  Sum_probs=121.9

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~   62 (184)
                      .|+|+++|++|+|.+++            ++.+||+||++...+. ..++.+.+..   ..+..    .+++.++++.+|
T Consensus        55 ~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g  133 (280)
T PRK13633         55 HMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVG  133 (280)
T ss_pred             HHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCC
Confidence            58999999999998653            2359999998731122 2344444322   11222    244678899999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhc
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~  138 (184)
                      +....+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+.    +.|||+||||++++.. |
T Consensus       134 L~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~  211 (280)
T PRK13633        134 MYEYRR-HAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-A  211 (280)
T ss_pred             CHhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-C
Confidence            986654 589999999999999999999999999999999999999999999998753    6799999999999986 9


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++|++|++.. .++.+++
T Consensus       212 d~v~~l~~G~i~~-~g~~~~~  231 (280)
T PRK13633        212 DRIIVMDSGKVVM-EGTPKEI  231 (280)
T ss_pred             CEEEEEECCEEEE-ecCHHHH
Confidence            9999999999875 4555443

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=225.95  Aligned_cols=153  Identities=25%  Similarity=0.243  Sum_probs=123.5

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cCC---C----HHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FNL---P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~~---~----~~~~~   55 (184)
                      +|+|+++|++|+|.+++            +..+||+||++.  +....++.+++...       ++.   .    .+++.
T Consensus        50 ~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (510)
T PRK09700         50 VLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA  127 (510)
T ss_pred             HHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeeccc--ccCCCcHHHHhhhccccccccccccccCHHHHHHHHH
Confidence            68999999999998753            135999999864  33444555554321       111   1    23567


Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER  132 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~  132 (184)
                      ++++.+|+....+ +++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++.   +.|||+||||++
T Consensus       128 ~~l~~~gl~~~~~-~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~  206 (510)
T PRK09700        128 MMLLRVGLKVDLD-EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA  206 (510)
T ss_pred             HHHHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            7899999986554 589999999999999999999999999999999999999999999998754   679999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        133 LIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      ++..+||++++|++|+++. .+++++
T Consensus       207 ~~~~~~d~v~~l~~G~i~~-~g~~~~  231 (510)
T PRK09700        207 EIRRICDRYTVMKDGSSVC-SGMVSD  231 (510)
T ss_pred             HHHHhCCEEEEEECCEEee-ecchhh
Confidence            9999999999999999864 555544

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.97  E-value=2.5e-30  Score=208.45  Aligned_cols=154  Identities=25%  Similarity=0.310  Sum_probs=121.0

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~   59 (184)
                      +|+|+.+|++|+|.+++              +..++|+||++...+....++.+++..    .....    ..++.++++
T Consensus        57 ~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~  136 (268)
T PRK10419         57 LLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLR  136 (268)
T ss_pred             HHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence            68999999999998653              236999999863223334455544321    11111    235678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+.....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++    +.|+|++||+++++.
T Consensus       137 ~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~  216 (268)
T PRK10419        137 AVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVE  216 (268)
T ss_pred             HcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHH
Confidence            9999632234589999999999999999999999999999999999999999998888643    679999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCCh
Q psy11928        136 DTECTLWVIENQTIEEIDGDF  156 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~  156 (184)
                      .+||++++|++|++.+ .++.
T Consensus       217 ~~~d~i~~l~~G~i~~-~g~~  236 (268)
T PRK10419        217 RFCQRVMVMDNGQIVE-TQPV  236 (268)
T ss_pred             HhCCEEEEEECCEEee-eCCh
Confidence            9999999999999865 4443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=226.54  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=123.4

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHHh---c----C---CC---HHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQRL---F----N---LP---YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~~---~----~---~~---~~~~~   55 (184)
                      +|+|+.+|++|+|.+++            +..++|+||++. ..+....++.+++...   .    +   ..   .+.+.
T Consensus       298 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  377 (501)
T PRK11288        298 LLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENAD  377 (501)
T ss_pred             HHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHH
Confidence            58999999999998753            135899999862 2234445555553211   0    0   01   13467


Q ss_pred             HHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928         56 KQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE  131 (184)
Q Consensus        56 ~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~  131 (184)
                      ++++.+++. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..++++|.+   .+.|||+||||+
T Consensus       378 ~~l~~~~l~~~~~~-~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~  456 (501)
T PRK11288        378 RFIRSLNIKTPSRE-QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL  456 (501)
T ss_pred             HHHHhcCcccCCcc-CccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            889999994 4444 58999999999999999999999999999999999999999999998854   478999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      +++..+||+++++++|++.. .++.+++.
T Consensus       457 ~~~~~~~d~i~~l~~g~i~~-~~~~~~~~  484 (501)
T PRK11288        457 PEVLGVADRIVVMREGRIAG-ELAREQAT  484 (501)
T ss_pred             HHHHhhCCEEEEEECCEEEE-EEccccCC
Confidence            99999999999999999865 44444443

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.97  E-value=6.7e-30  Score=227.53  Aligned_cols=156  Identities=27%  Similarity=0.479  Sum_probs=125.5

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHH---------------------------------HH---
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYL---------------------------------QR---   45 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~---------------------------------~~---   45 (184)
                      +|+|+++|++|+|.+++...+++++|.+...  ...++.+++                                 ..   
T Consensus        48 iiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  125 (635)
T PRK11147         48 ILNGEVLLDDGRIIYEQDLIVARLQQDPPRN--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQE  125 (635)
T ss_pred             HHcCCCCCCCeEEEeCCCCEEEEeccCCCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            6899999999999987766789998865211  111111110                                 00   


Q ss_pred             -hc---C-CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc
Q psy11928         46 -LF---N-LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY  120 (184)
Q Consensus        46 -~~---~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~  120 (184)
                       ..   . ....++.++++.+|+..   ++++++|||||||||+|||||+.+|++||||||||+||+.++.++.++|.++
T Consensus       126 ~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~  202 (635)
T PRK11147        126 QLDHHNLWQLENRINEVLAQLGLDP---DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF  202 (635)
T ss_pred             HHHhcCcccHHHHHHHHHHhCCCCC---CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC
Confidence             00   0 01345778899999962   3589999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHHH
Q psy11928        121 KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKE  162 (184)
Q Consensus       121 ~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~  162 (184)
                      +.|||+||||++++..+|+++++|++|+++.+.|+++.|.+.
T Consensus       203 ~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~  244 (635)
T PRK11147        203 QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLLE  244 (635)
T ss_pred             CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHHH
Confidence            889999999999999999999999999998778888776543

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.3e-30  Score=224.22  Aligned_cols=147  Identities=23%  Similarity=0.225  Sum_probs=120.7

Q ss_pred             cccCcccC--CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c--C-CC----HHHHHHH
Q psy11928          2 YAHCDLQP--QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F--N-LP----YEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~p--~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~--~-~~----~~~~~~~   57 (184)
                      +|+|+++|  ++|+|.+++            +..+||+||++.  +....++.+++...   .  . ..    .+++.++
T Consensus        50 ~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~  127 (506)
T PRK13549         50 VLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKL  127 (506)
T ss_pred             HHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHH
Confidence            68999986  899998753            245999999863  33445665554321   1  1 11    2356788


Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI  134 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~  134 (184)
                      ++.+|++...+ +++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.++   +.|||+||||++++
T Consensus       128 l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~  206 (506)
T PRK13549        128 LAQLKLDINPA-TPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV  206 (506)
T ss_pred             HHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence            99999976554 589999999999999999999999999999999999999999999998664   67999999999999


Q ss_pred             HhhcCeEEEEeCCeEEE
Q psy11928        135 RDTECTLWVIENQTIEE  151 (184)
Q Consensus       135 ~~~~~~i~~l~~g~i~~  151 (184)
                      ..+||++++|++|+++.
T Consensus       207 ~~~~d~v~~l~~G~i~~  223 (506)
T PRK13549        207 KAISDTICVIRDGRHIG  223 (506)
T ss_pred             HHhcCEEEEEECCEEee
Confidence            99999999999999865

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.1e-30  Score=222.90  Aligned_cols=151  Identities=15%  Similarity=0.177  Sum_probs=122.5

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh----cC--CC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL----FN--LP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~----~~--~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++            +..+||+||++.  +....++.+++...    .+  ..    .+++.++++
T Consensus        43 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  120 (491)
T PRK10982         43 CLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD  120 (491)
T ss_pred             HHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHH
Confidence            58999999999998754            245999999874  33445555554321    11  11    134677899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+|++...+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|.+.   +.|||+||||++++..
T Consensus       121 ~~~l~~~~~-~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~  199 (491)
T PRK10982        121 ELDIDIDPR-AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ  199 (491)
T ss_pred             HcCCCCCcc-CchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence            999986654 589999999999999999999999999999999999999999999988664   6799999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCCh
Q psy11928        137 TECTLWVIENQTIEEIDGDF  156 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~  156 (184)
                      +||++++|++|+++. .++.
T Consensus       200 ~~d~i~~l~~G~i~~-~~~~  218 (491)
T PRK10982        200 LCDEITILRDGQWIA-TQPL  218 (491)
T ss_pred             hCCEEEEEECCEEEe-ecCh
Confidence            999999999999875 4443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.97  E-value=2.3e-30  Score=224.94  Aligned_cols=149  Identities=21%  Similarity=0.278  Sum_probs=120.6

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHHh----c----C-CC----HHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQRL----F----N-LP----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~~----~----~-~~----~~~~~   55 (184)
                      +|+|+.+|++|+|.+++            +..+||+||++. ..+....++.+++...    .    + ..    .+++.
T Consensus       297 ~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  376 (501)
T PRK10762        297 VLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVS  376 (501)
T ss_pred             HHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHH
Confidence            58999999999998754            135999999863 1234445665544310    0    0 11    23467


Q ss_pred             HHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928         56 KQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE  131 (184)
Q Consensus        56 ~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~  131 (184)
                      ++++.+|+. ... ++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|+++   +.|||+||||+
T Consensus       377 ~~l~~~~l~~~~~-~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~  455 (501)
T PRK10762        377 DFIRLFNIKTPSM-EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM  455 (501)
T ss_pred             HHHHhcCCCCCCc-cCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            889999995 444 4689999999999999999999999999999999999999999999998764   57999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEE
Q psy11928        132 RLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~  151 (184)
                      +++..+||++++|++|++..
T Consensus       456 ~~~~~~~d~v~~l~~G~i~~  475 (501)
T PRK10762        456 PEVLGMSDRILVMHEGRISG  475 (501)
T ss_pred             HHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999864

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.5e-30  Score=226.32  Aligned_cols=156  Identities=15%  Similarity=0.230  Sum_probs=121.8

Q ss_pred             cccCccc-CCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHH-----hcC---CC----HHHHH
Q psy11928          2 YAHCDLQ-PQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQR-----LFN---LP----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~-p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~-----~~~---~~----~~~~~   55 (184)
                      +|+|+++ |++|+|.+++            +..+||++|++. ..+....++.+++..     ...   ..    .+++.
T Consensus       307 ~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~  386 (506)
T PRK13549        307 CLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTIL  386 (506)
T ss_pred             HHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHH
Confidence            5899998 5999998753            134999999852 123334555554421     111   11    13467


Q ss_pred             HHHhhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928         56 KQLGTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE  131 (184)
Q Consensus        56 ~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~  131 (184)
                      ++++.+++. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+.++|.+   .+.|||++|||+
T Consensus       387 ~~l~~~~l~~~~~~-~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~  465 (506)
T PRK13549        387 ESIQRLKVKTASPE-LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL  465 (506)
T ss_pred             HHHHhcCccCCCcc-cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence            889999996 3444 58999999999999999999999999999999999999999999988864   378999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++..+||++++|++|++.. .++.+++
T Consensus       466 ~~~~~~~d~v~~l~~G~i~~-~~~~~~~  492 (506)
T PRK13549        466 PEVLGLSDRVLVMHEGKLKG-DLINHNL  492 (506)
T ss_pred             HHHHHhCCEEEEEECCEEEE-EeccccC
Confidence            99999999999999999864 4444444

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.5e-30  Score=208.56  Aligned_cols=154  Identities=23%  Similarity=0.279  Sum_probs=121.5

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l   63 (184)
                      .|+|+++|++|+|.+++           +..+||+||++.. +....++.+++..   ..+...    +++.++++.+|+
T Consensus        52 ~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l  130 (277)
T PRK13642         52 LIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDN-QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNM  130 (277)
T ss_pred             HHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHH-hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            58999999999998753           3469999998631 1223355554432   112222    345678899999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~  139 (184)
                      ....+ +++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++.    +.|||++|||++++. .||
T Consensus       131 ~~~~~-~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d  208 (277)
T PRK13642        131 LDFKT-REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSD  208 (277)
T ss_pred             HhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCC
Confidence            76554 589999999999999999999999999999999999999999999998643    679999999999997 599


Q ss_pred             eEEEEeCCeEEEecCChhHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++|++|++++ .++.+++
T Consensus       209 ~i~~l~~G~i~~-~g~~~~~  227 (277)
T PRK13642        209 RILVMKAGEIIK-EAAPSEL  227 (277)
T ss_pred             EEEEEECCEEEE-eCCHHHH
Confidence            999999999875 4555443

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.4e-30  Score=205.36  Aligned_cols=153  Identities=19%  Similarity=0.176  Sum_probs=119.7

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARK   56 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~   56 (184)
                      +|+|+.+|     ++|+|.+++             +..+||+||++.  +.. .++.+++..   ..+...    +++.+
T Consensus        57 ~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  133 (258)
T PRK14268         57 CLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVEN  133 (258)
T ss_pred             HHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            57898875     899997642             235999999874  222 455555432   122222    24667


Q ss_pred             HHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         57 QLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        57 ~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      +++.+++.    ... ++++.+|||||+|||+|||||+.+|+++||||||+|||+.++..+.+.|++.  +.|||+||||
T Consensus       134 ~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~  212 (258)
T PRK14268        134 ALRSAALWDETSDRL-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN  212 (258)
T ss_pred             HHHHcCCCcchhhhh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECC
Confidence            88888884    223 3589999999999999999999999999999999999999999999999765  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||++++|++|++.. .++.+++
T Consensus       213 ~~~~~~~~d~i~~l~~G~i~~-~~~~~~~  240 (258)
T PRK14268        213 MQQAARISDYTGFFLMGELIE-FGQTRQI  240 (258)
T ss_pred             HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            999999999999999999975 4554443

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.97  E-value=5.4e-30  Score=222.54  Aligned_cols=149  Identities=23%  Similarity=0.245  Sum_probs=120.2

Q ss_pred             cccCcccC--CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c--C--CC----HHHHHH
Q psy11928          2 YAHCDLQP--QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F--N--LP----YEKARK   56 (184)
Q Consensus         2 ~~~G~~~p--~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~--~--~~----~~~~~~   56 (184)
                      +|+|+.+|  ++|+|.+++            +..+||+||++.  +....++.+++...   .  .  ..    .+++.+
T Consensus        46 ~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~  123 (500)
T TIGR02633        46 ILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELT--LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKN  123 (500)
T ss_pred             HHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccc--cCCCCcHHHHHHhhccccccccccCHHHHHHHHHH
Confidence            58899987  799998754            235999999874  33445555554321   1  0  11    234678


Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL  133 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~  133 (184)
                      +++.+|+.....++++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++   +.|||+||||+++
T Consensus       124 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~  203 (500)
T TIGR02633       124 LLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE  203 (500)
T ss_pred             HHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence            8999999765434579999999999999999999999999999999999999999999998653   6799999999999


Q ss_pred             HHhhcCeEEEEeCCeEEEe
Q psy11928        134 IRDTECTLWVIENQTIEEI  152 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~~  152 (184)
                      +..+||++++|++|+++..
T Consensus       204 ~~~~~d~i~~l~~G~i~~~  222 (500)
T TIGR02633       204 VKAVCDTICVIRDGQHVAT  222 (500)
T ss_pred             HHHhCCEEEEEeCCeEeee
Confidence            9999999999999998653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.97  E-value=1.7e-30  Score=226.30  Aligned_cols=149  Identities=18%  Similarity=0.234  Sum_probs=119.6

Q ss_pred             cccCcccCCceeEEecCC------------eEEEEEecCCC-CCCCccCCHHHHHHH-----h-c--CC--CHHHHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNHR------------LRIGRFDQHSG-EHLTAEETPAEYLQR-----L-F--NL--PYEKARKQL   58 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~------------~~ig~v~q~~~-~~l~~~~~~~~~~~~-----~-~--~~--~~~~~~~~l   58 (184)
                      +|+|+.+|++|+|.+++.            ..++|+||++. ..+....++.+++..     . .  ..  ..+.+.+++
T Consensus       308 ~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  387 (510)
T PRK15439        308 TLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYR  387 (510)
T ss_pred             HHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHH
Confidence            589999999999987541            35999999752 123344455444321     0 0  11  123467889


Q ss_pred             hhCCCC-cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928         59 GTFGLA-GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI  134 (184)
Q Consensus        59 ~~~~l~-~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~  134 (184)
                      +.+|+. ...+ +++++|||||||||+||||++.+|++|||||||+|||+.+++.+.+.|+++   +.|||+||||++++
T Consensus       388 ~~~~l~~~~~~-~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i  466 (510)
T PRK15439        388 RALNIKFNHAE-QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEI  466 (510)
T ss_pred             HHcCCCCCCcc-CccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence            999996 4554 589999999999999999999999999999999999999999999998764   78999999999999


Q ss_pred             HhhcCeEEEEeCCeEEE
Q psy11928        135 RDTECTLWVIENQTIEE  151 (184)
Q Consensus       135 ~~~~~~i~~l~~g~i~~  151 (184)
                      ..+||+++++++|+++.
T Consensus       467 ~~~~d~i~~l~~G~i~~  483 (510)
T PRK15439        467 EQMADRVLVMHQGEISG  483 (510)
T ss_pred             HHhCCEEEEEECCEEEE
Confidence            99999999999999875

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.5e-30  Score=208.50  Aligned_cols=154  Identities=25%  Similarity=0.275  Sum_probs=121.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l   63 (184)
                      +|+|+++|++|+|.+++           ++.++|+||++.. +....++.+++..   .....    .+++.++++.+|+
T Consensus        54 ~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  132 (269)
T PRK13648         54 LMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDN-QFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM  132 (269)
T ss_pred             HHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHH-hcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999998754           2359999998731 2223344433321   11122    2346678999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~  139 (184)
                      .+..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.+.    +.|||+|||+++++.. ||
T Consensus       133 ~~~~~-~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d  210 (269)
T PRK13648        133 LERAD-YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-AD  210 (269)
T ss_pred             chhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CC
Confidence            76554 589999999999999999999999999999999999999999999988753    5799999999999986 99


Q ss_pred             eEEEEeCCeEEEecCChhHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++|++|++.. .++.+++
T Consensus       211 ~i~~l~~G~i~~-~g~~~~~  229 (269)
T PRK13648        211 HVIVMNKGTVYK-EGTPTEI  229 (269)
T ss_pred             EEEEEECCEEEE-ecCHHHH
Confidence            999999999975 4555443

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5e-30  Score=205.02  Aligned_cols=153  Identities=23%  Similarity=0.232  Sum_probs=119.5

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+++|     ++|+|.+++             +..+||+||++.  +. ..++.+++..   ..+. .    .+.+.
T Consensus        52 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~  128 (254)
T PRK14273         52 TLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN--PF-LMSIYDNISYGPKIHGTKDKKKLDEIVE  128 (254)
T ss_pred             HHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc--cc-cCcHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            57899887     589997643             235999999874  22 2556555432   1111 1    23456


Q ss_pred             HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      +.++.+++.    +.. ++++++||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++  +.|||++||
T Consensus       129 ~~l~~~~l~~~l~~~~-~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH  207 (254)
T PRK14273        129 QSLKKSALWNEVKDKL-NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTH  207 (254)
T ss_pred             HHHHHhCCchhhHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            778888873    233 3579999999999999999999999999999999999999999999999765  479999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++..+||++++|++|+++. .++..++
T Consensus       208 ~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  236 (254)
T PRK14273        208 NMQQAGRISDRTAFFLNGCIEE-ESSTDEL  236 (254)
T ss_pred             CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999975 4554443

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.97  E-value=3.1e-30  Score=201.96  Aligned_cols=146  Identities=25%  Similarity=0.347  Sum_probs=116.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      +|+|+.+|++|+|.+++           +..++|++|++.  +.. .++.+++..... ....++.++++.+++.+..+.
T Consensus        49 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~  125 (220)
T cd03245          49 LLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNK  125 (220)
T ss_pred             HHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHh
Confidence            57899999999998754           236999999874  222 466666543211 234456677888888654432


Q ss_pred             c----------cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhh
Q psy11928         70 I----------KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDT  137 (184)
Q Consensus        70 ~----------~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~  137 (184)
                      .          ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++.  .|||++|||++++ .+
T Consensus       126 ~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~  204 (220)
T cd03245         126 HPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DL  204 (220)
T ss_pred             ccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-Hh
Confidence            1          246999999999999999999999999999999999999999999998753  6999999999987 68


Q ss_pred             cCeEEEEeCCeEEE
Q psy11928        138 ECTLWVIENQTIEE  151 (184)
Q Consensus       138 ~~~i~~l~~g~i~~  151 (184)
                      ||+++++++|+++.
T Consensus       205 ~d~v~~l~~g~i~~  218 (220)
T cd03245         205 VDRIIVMDSGRIVA  218 (220)
T ss_pred             CCEEEEEeCCeEee
Confidence            99999999999864

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.97  E-value=6.3e-30  Score=202.66  Aligned_cols=154  Identities=27%  Similarity=0.319  Sum_probs=123.8

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         +..++|+||++.  +....++.+++...   .+..    .+.+.++++.+++..
T Consensus        45 ~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  122 (237)
T TIGR00968        45 IIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG  122 (237)
T ss_pred             HHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChh--hccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh
Confidence            58999999999998653         246999999874  33344555554321   1221    234677899999976


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+||+||+||++|||+++.+|+++||||||+|||+.++..+.+.|.+.    +.|||++||+++++..+||++
T Consensus       123 ~~~-~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i  201 (237)
T TIGR00968       123 LGD-RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRI  201 (237)
T ss_pred             Hhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEE
Confidence            554 588999999999999999999999999999999999999999999999753    679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      +++++|++++ .++.+.+
T Consensus       202 ~~l~~g~i~~-~~~~~~~  218 (237)
T TIGR00968       202 VVMSNGKIEQ-IGSPDEV  218 (237)
T ss_pred             EEEECCEEEE-ecCHHHH
Confidence            9999999975 4555444

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=3.1e-30  Score=200.78  Aligned_cols=157  Identities=25%  Similarity=0.307  Sum_probs=128.7

Q ss_pred             CcccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-----------c--CC--C---
Q psy11928          1 MYAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-----------F--NL--P---   50 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-----------~--~~--~---   50 (184)
                      ++|+|.++|++|+|.+.+            +..|+..||.+.  +...+|+.+++...           +  ..  .   
T Consensus        48 NlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r--lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~  125 (250)
T COG0411          48 NLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR--LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE  125 (250)
T ss_pred             eeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc--ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHH
Confidence            478999999999998764            346889999874  34455555543211           0  00  1   


Q ss_pred             -HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEE
Q psy11928         51 -YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVI  125 (184)
Q Consensus        51 -~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tii  125 (184)
                       .+++.++|+.+||.+.++ .+.++||+|||+|+.|||||+.+|++||||||.+||.+.....+.+.|.+.    +.||+
T Consensus       126 ~~e~A~~~Le~vgL~~~a~-~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~til  204 (250)
T COG0411         126 ARERARELLEFVGLGELAD-RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTIL  204 (250)
T ss_pred             HHHHHHHHHHHcCCchhhc-chhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEE
Confidence             245778999999998776 589999999999999999999999999999999999999999999888653    57999


Q ss_pred             EEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       126 ivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      +|.||+..+..+||||++|+.|++.. .|++++..+
T Consensus       205 lIEHdM~~Vm~l~dri~Vl~~G~~IA-eG~P~eV~~  239 (250)
T COG0411         205 LIEHDMKLVMGLADRIVVLNYGEVIA-EGTPEEVRN  239 (250)
T ss_pred             EEEeccHHHhhhccEEEeccCCcCcc-cCCHHHHhc
Confidence            99999999999999999999999864 788877654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=8.3e-30  Score=204.50  Aligned_cols=154  Identities=23%  Similarity=0.223  Sum_probs=120.3

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---c-CCCH----HHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F-NLPY----EKAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~-~~~~----~~~~   55 (184)
                      +|+|+++     |++|+|.+++             ++.++|+||++.  +.. .++.+++...   . ..+.    +++.
T Consensus        58 ~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~  134 (260)
T PRK10744         58 TFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVE  134 (260)
T ss_pred             HHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHH
Confidence            5789886     5899997643             246999999874  223 4666554321   1 1221    3467


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++..   ...++++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|++.  +.|||++||+
T Consensus       135 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~  214 (260)
T PRK10744        135 WALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN  214 (260)
T ss_pred             HHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            7888998742   1223578999999999999999999999999999999999999999999999765  4699999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||+++++++|+++. .++.+++
T Consensus       215 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  242 (260)
T PRK10744        215 MQQAARCSDYTAFMYLGELIE-FGNTDTI  242 (260)
T ss_pred             HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            999999999999999999975 4554443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.9e-30  Score=223.52  Aligned_cols=147  Identities=26%  Similarity=0.239  Sum_probs=120.9

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-----cC-CC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-----FN-LP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-----~~-~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++            +..+||+||++.  +....++.+++...     .+ ..    .+++.++++
T Consensus        49 ~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  126 (501)
T PRK11288         49 ILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELH--LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLE  126 (501)
T ss_pred             HHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechh--ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHH
Confidence            68999999999998653            245999999863  33445555554321     11 11    235678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+|+....+ +++.+|||||||||+|||||+.+|+++||||||++||+.++.++.+.|.+.   +.|||+||||++++..
T Consensus       127 ~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~  205 (501)
T PRK11288        127 HLGVDIDPD-TPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA  205 (501)
T ss_pred             HcCCCCCcC-CchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            999976554 589999999999999999999999999999999999999999999998754   6799999999999999


Q ss_pred             hcCeEEEEeCCeEEE
Q psy11928        137 TECTLWVIENQTIEE  151 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~  151 (184)
                      +||++++|++|+++.
T Consensus       206 ~~d~i~~l~~G~i~~  220 (501)
T PRK11288        206 LCDAITVFKDGRYVA  220 (501)
T ss_pred             hCCEEEEEECCEEEe
Confidence            999999999999864

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.8e-30  Score=204.08  Aligned_cols=154  Identities=21%  Similarity=0.245  Sum_probs=119.5

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+..     |++|+|.+++             +..++|++|++.  +.. .++.+++..   ..+. .    .+++.
T Consensus        51 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  127 (253)
T PRK14242         51 CLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVE  127 (253)
T ss_pred             HHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            5778764     6899997653             236999999874  323 366555432   1111 1    23566


Q ss_pred             HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+|+...   ..++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|++.  +.|||+||||
T Consensus       128 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~  207 (253)
T PRK14242        128 RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN  207 (253)
T ss_pred             HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEec
Confidence            78888888431   123578999999999999999999999999999999999999999999999765  4799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||++++|++|++.. .++.+++
T Consensus       208 ~~~~~~~~d~v~~l~~G~i~~-~g~~~~~  235 (253)
T PRK14242        208 MQQAARVSDVTAFFYMGKLIE-VGPTEQI  235 (253)
T ss_pred             HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            999999999999999999975 4554443

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.97  E-value=5.8e-30  Score=223.32  Aligned_cols=138  Identities=26%  Similarity=0.319  Sum_probs=109.3

Q ss_pred             EEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC
Q psy11928         21 RIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP   93 (184)
Q Consensus        21 ~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p   93 (184)
                      .+||+||++. .+....++.+++..   ..+..    .+++.++++.+|++...+ +++++|||||||||+|||||+.+|
T Consensus       110 ~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~iA~al~~~p  187 (520)
T TIGR03269       110 RIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT-HIARDLSGGEKQRVVLARQLAKEP  187 (520)
T ss_pred             cEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-cCcccCCHHHHHHHHHHHHHhcCC
Confidence            5899999732 22233455444322   12222    245678899999976554 589999999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928         94 DVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus        94 ~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      ++|||||||++||+.++.++.++|.++    +.|||+||||++++..+||++++|++|++.. .++++++..
T Consensus       188 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~  258 (520)
T TIGR03269       188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE-EGTPDEVVA  258 (520)
T ss_pred             CEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEee-ecCHHHHHH
Confidence            999999999999999999998887643    6799999999999999999999999999864 566665544

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.8e-30  Score=207.73  Aligned_cols=153  Identities=24%  Similarity=0.300  Sum_probs=120.7

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l   63 (184)
                      +|+|+.+|++|+|.+++           +..+||+||++.. .....|+.+++..   ......    +.+.++++.+|+
T Consensus        54 ~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l  132 (271)
T PRK13632         54 ILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDN-QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM  132 (271)
T ss_pred             HHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHH-hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999997653           3469999998621 1123455554432   112222    246778999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcC
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~  139 (184)
                      ....+ +++.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|.+.    +.|||++||+++++. .||
T Consensus       133 ~~~~~-~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d  210 (271)
T PRK13632        133 EDYLD-KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LAD  210 (271)
T ss_pred             HHHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCC
Confidence            86555 589999999999999999999999999999999999999999999999764    379999999999996 799


Q ss_pred             eEEEEeCCeEEEecCChhH
Q psy11928        140 TLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~  158 (184)
                      ++++|++|++.. .++.++
T Consensus       211 ~v~~l~~G~i~~-~g~~~~  228 (271)
T PRK13632        211 KVIVFSEGKLIA-QGKPKE  228 (271)
T ss_pred             EEEEEECCEEEE-ecCHHH
Confidence            999999999865 444444

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=8e-30  Score=206.93  Aligned_cols=153  Identities=24%  Similarity=0.299  Sum_probs=121.3

Q ss_pred             cccCcccCCc---eeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhh
Q psy11928          2 YAHCDLQPQQ---GELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~---G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~   60 (184)
                      +|+|+++|++   |+|.+++           +..+||+||++.. +....++.+++..   ..+...    +++.++++.
T Consensus        52 ~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~  130 (282)
T PRK13640         52 LINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDN-QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLAD  130 (282)
T ss_pred             HHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHH-hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHH
Confidence            5899999998   8997653           2469999998731 1223455555431   222222    346778999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~  136 (184)
                      +|+.+..+ +++.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|.+.    +.|||++||+++++. 
T Consensus       131 ~~L~~~~~-~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-  208 (282)
T PRK13640        131 VGMLDYID-SEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-  208 (282)
T ss_pred             CCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-
Confidence            99986655 589999999999999999999999999999999999999999999998653    679999999999995 


Q ss_pred             hcCeEEEEeCCeEEEecCChhH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      .||++++|++|++.. .++.++
T Consensus       209 ~~d~i~~l~~G~i~~-~g~~~~  229 (282)
T PRK13640        209 MADQVLVLDDGKLLA-QGSPVE  229 (282)
T ss_pred             hCCEEEEEECCEEEE-eCCHHH
Confidence            799999999999975 455444

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.4e-30  Score=206.91  Aligned_cols=154  Identities=16%  Similarity=0.196  Sum_probs=117.9

Q ss_pred             cccCcccCCceeEEecCC--------eEEEEEecCCCCCCCccCCHHHHHHH--h-----cCC----CHHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNHR--------LRIGRFDQHSGEHLTAEETPAEYLQR--L-----FNL----PYEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~--------~~ig~v~q~~~~~l~~~~~~~~~~~~--~-----~~~----~~~~~~~~l~~~~   62 (184)
                      +|+|+++|++|+|.+++.        ..++|+||++........++.+.+..  .     ...    ..+++.++++.+|
T Consensus        52 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  131 (272)
T PRK15056         52 ALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVD  131 (272)
T ss_pred             HHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcC
Confidence            589999999999987641        35999999864111111122222110  0     001    1234667889999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~  139 (184)
                      +....+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++   +.|||+||||++++..+||
T Consensus       132 l~~~~~-~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d  210 (272)
T PRK15056        132 MVEFRH-RQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD  210 (272)
T ss_pred             ChhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            976554 589999999999999999999999999999999999999999999999754   6799999999999999999


Q ss_pred             eEEEEeCCeEEEecCChhH
Q psy11928        140 TLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~  158 (184)
                      +++++ +|++.. .++.++
T Consensus       211 ~v~~~-~G~i~~-~g~~~~  227 (272)
T PRK15056        211 YTVMV-KGTVLA-SGPTET  227 (272)
T ss_pred             EEEEE-CCEEEe-ecCHHh
Confidence            99777 899865 455544

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.97  E-value=9.4e-30  Score=201.39  Aligned_cols=153  Identities=24%  Similarity=0.350  Sum_probs=116.4

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHH---------HHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKAR---------KQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---------~~l~~   60 (184)
                      +|+|+.+|++|+|.+++           +..++|+||++.  +. ..++.+++.... ......+.         ++++.
T Consensus        47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~  123 (237)
T cd03252          47 LIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENV--LF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISE  123 (237)
T ss_pred             HHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCch--hc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHh
Confidence            58999999999998764           246999999874  22 246666553211 11222222         23333


Q ss_pred             C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      +  ++..... +++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.|.+.  +.|||++|||++++. 
T Consensus       124 l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-  201 (237)
T cd03252         124 LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-  201 (237)
T ss_pred             Ccccccchhh-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-
Confidence            3  4443333 478999999999999999999999999999999999999999999999765  579999999999996 


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      .||+++++++|+++. .++.+++.
T Consensus       202 ~~d~v~~l~~G~i~~-~~~~~~~~  224 (237)
T cd03252         202 NADRIIVMEKGRIVE-QGSHDELL  224 (237)
T ss_pred             hCCEEEEEECCEEEE-EcCHHHHH
Confidence            599999999999975 45555543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=3.7e-30  Score=201.09  Aligned_cols=142  Identities=26%  Similarity=0.364  Sum_probs=115.8

Q ss_pred             cccCcccCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-CHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-PYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~~l~~~~~~   69 (184)
                      +|+|+++|++|+|.+++        +..++|++|++.  +....++.+++...   .+. ..+.+.++++.+++....+ 
T Consensus        56 ~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-  132 (214)
T PRK13543         56 VLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG--LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYED-  132 (214)
T ss_pred             HHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcc--cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhcc-
Confidence            58999999999998764        235999999864  33444565554321   122 2345678899999986654 


Q ss_pred             ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      +++.+||||||||++|||+++.+|+++||||||++||+.+++.+.+.+.+.   +.|+|++|||++++..+|++++++..
T Consensus       133 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        133 TLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            589999999999999999999999999999999999999999999998754   78999999999999999999998753

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=9.2e-30  Score=203.33  Aligned_cols=155  Identities=19%  Similarity=0.177  Sum_probs=120.5

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC--CH----HHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL--PY----EKA   54 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~--~~----~~~   54 (184)
                      +|+|+++|     ++|+|.+++             +..++|+||++.  +....++.+++...   .+.  ..    .++
T Consensus        49 ~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~  126 (253)
T PRK14267         49 TFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN--PFPHLTIYDNVAIGVKLNGLVKSKKELDERV  126 (253)
T ss_pred             HHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc--cCCCCcHHHHHHHHHHhcCccCCHHHHHHHH
Confidence            58899987     499997643             235999999874  33344555554321   111  11    345


Q ss_pred             HHHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         55 RKQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        55 ~~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      .++++.+|+..   ...++++.+||||||||++||||++.+|+++||||||+|||+.++.++.+.|.+.  +.|||++||
T Consensus       127 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH  206 (253)
T PRK14267        127 EWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH  206 (253)
T ss_pred             HHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEEC
Confidence            67888888742   1223589999999999999999999999999999999999999999999999765  479999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++..+||++++|++|++.. .++.+++
T Consensus       207 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~  235 (253)
T PRK14267        207 SPAQAARVSDYVAFLYLGKLIE-VGPTRKV  235 (253)
T ss_pred             CHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999975 4555443

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.97  E-value=2.5e-29  Score=202.25  Aligned_cols=167  Identities=19%  Similarity=0.263  Sum_probs=127.9

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCHH----HHHHHHhhCCCCcccccccccC
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPYE----KARKQLGTFGLAGHAHTIKMKD   74 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~~----~~~~~l~~~~l~~~~~~~~~~~   74 (184)
                      +|+|+++|++|+|.+++.  +++++|.+.  +....++.+++..   ..+...+    .+..+++.+++....+ +++.+
T Consensus        69 ~L~Gl~~p~~G~I~~~g~--~~~~~~~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~  143 (264)
T PRK13546         69 IIGGSLSPTVGKVDRNGE--VSVIAISAG--LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIY-QPVKK  143 (264)
T ss_pred             HHhCCcCCCceEEEECCE--EeEEecccC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCccc
Confidence            589999999999988763  567777653  2334455555432   1122222    2445778888876554 58999


Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928         75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus        75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      |||||+||++||||++.+|++|||||||+|||+.++..+.+.+.+.   +.|||++||+++++..+|++++++++|++..
T Consensus       144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~  223 (264)
T PRK13546        144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD  223 (264)
T ss_pred             CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999988654   6899999999999999999999999999975


Q ss_pred             ecCChhHHHHHHHHHhhhhhcCc
Q psy11928        152 IDGDFDDYRKELLEALGEVVNNP  174 (184)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~  174 (184)
                       .++.+++.......+.....+.
T Consensus       224 -~g~~~~~~~~~~~~~~~~~~~~  245 (264)
T PRK13546        224 -YGELDDVLPKYEAFLNDFKKKS  245 (264)
T ss_pred             -eCCHHHHHHHhHHHHHHHHhcc
Confidence             5666666655544444444443

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=202.28  Aligned_cols=154  Identities=20%  Similarity=0.233  Sum_probs=120.5

Q ss_pred             cccCccc---CCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC------CHHHHHHHH
Q psy11928          2 YAHCDLQ---PQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL------PYEKARKQL   58 (184)
Q Consensus         2 ~~~G~~~---p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~------~~~~~~~~l   58 (184)
                      +|+|+++   |++|+|.+++           +..++|+||++.  +.. .++.+++..   ..+.      ..+++.+++
T Consensus        47 ~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l  123 (246)
T PRK14269         47 CFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCL  123 (246)
T ss_pred             HHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHH
Confidence            5788874   7999998653           346999999874  322 366555432   1111      123466789


Q ss_pred             hhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928         59 GTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL  133 (184)
Q Consensus        59 ~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~  133 (184)
                      +.+++...   ..++++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+.  +.|||+||||+++
T Consensus       124 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~  203 (246)
T PRK14269        124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ  203 (246)
T ss_pred             HHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            99999531   223578999999999999999999999999999999999999999999999764  6799999999999


Q ss_pred             HHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        134 IRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +..+||+++++++|+++. .++..++
T Consensus       204 ~~~~~d~i~~l~~G~i~~-~g~~~~~  228 (246)
T PRK14269        204 GKRVADYTAFFHLGELIE-FGESKEF  228 (246)
T ss_pred             HHhhCcEEEEEECCEEEE-ECCHHHH
Confidence            999999999999999975 4444443

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=7.7e-30  Score=222.98  Aligned_cols=155  Identities=21%  Similarity=0.265  Sum_probs=120.6

Q ss_pred             cccCcccC-----CceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEK   53 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~   53 (184)
                      +|+|+++|     ++|+|.+++               +..+||+||++...+....++.+.+..    ..+..    .++
T Consensus        54 ~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (529)
T PRK15134         54 SILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGE  133 (529)
T ss_pred             HHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence            57899986     799997643               136999999863223334444443321    11222    245


Q ss_pred             HHHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11928         54 ARKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIV  127 (184)
Q Consensus        54 ~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiiv  127 (184)
                      +.++++.+|+.+.  ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++    .+.|||+|
T Consensus       134 ~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v  213 (529)
T PRK15134        134 ILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFI  213 (529)
T ss_pred             HHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            6788999999752  12458999999999999999999999999999999999999999999999875    36899999


Q ss_pred             ecCHHHHHhhcCeEEEEeCCeEEEecCChh
Q psy11928        128 SHDERLIRDTECTLWVIENQTIEEIDGDFD  157 (184)
Q Consensus       128 sHd~~~~~~~~~~i~~l~~g~i~~~~~~~~  157 (184)
                      |||++++..+||++++|++|+++. .+...
T Consensus       214 tHd~~~~~~~~dri~~l~~G~i~~-~g~~~  242 (529)
T PRK15134        214 THNLSIVRKLADRVAVMQNGRCVE-QNRAA  242 (529)
T ss_pred             cCcHHHHHHhcCEEEEEECCEEEE-eCCHH
Confidence            999999999999999999999875 34433

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.6e-30  Score=223.69  Aligned_cols=150  Identities=18%  Similarity=0.247  Sum_probs=118.4

Q ss_pred             cccCcccC-CceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHH-----hc---CCC----HHHHH
Q psy11928          2 YAHCDLQP-QQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQR-----LF---NLP----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p-~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~-----~~---~~~----~~~~~   55 (184)
                      +|+|+.+| ++|+|.+++            +.++||+||++. ..+....++.+++..     ..   ...    ..++.
T Consensus       305 ~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (500)
T TIGR02633       305 ALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIG  384 (500)
T ss_pred             HHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHH
Confidence            58999985 899998753            235999999852 123344455444321     11   111    23467


Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER  132 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~  132 (184)
                      ++++.+++.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.+.++   +.|||+||||++
T Consensus       385 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~  464 (500)
T TIGR02633       385 SAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA  464 (500)
T ss_pred             HHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence            88999999643224589999999999999999999999999999999999999999998887653   689999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEE
Q psy11928        133 LIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~  151 (184)
                      ++..+||+++++++|++..
T Consensus       465 ~~~~~~d~v~~l~~G~i~~  483 (500)
T TIGR02633       465 EVLGLSDRVLVIGEGKLKG  483 (500)
T ss_pred             HHHHhCCEEEEEECCEEEE
Confidence            9999999999999999864

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.97  E-value=1e-29  Score=200.08  Aligned_cols=152  Identities=24%  Similarity=0.305  Sum_probs=115.9

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhC--------
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTF--------   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--------   61 (184)
                      +|+|+.+|++|+|.+++           +..++|+||++.  +.. .++.+++..... ....++.+.++.+        
T Consensus        48 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  124 (229)
T cd03254          48 LLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTF--LFS-GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMK  124 (229)
T ss_pred             HHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCch--hhh-hHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh
Confidence            68999999999998754           345999999874  322 366665543211 1223333333333        


Q ss_pred             ---CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         62 ---GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        62 ---~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                         ++..... +++.+|||||||||+|||||+.+|+++||||||+|||+.+++.+.+.+.+.  +.|||+|||+++++..
T Consensus       125 ~~~~~~~~~~-~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  203 (229)
T cd03254         125 LPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN  203 (229)
T ss_pred             CcccccCHhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence               3433333 468999999999999999999999999999999999999999999999765  5799999999999975


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                       |+++++|++|++.. .++.+++
T Consensus       204 -~d~i~~l~~g~~~~-~~~~~~~  224 (229)
T cd03254         204 -ADKILVLDDGKIIE-EGTHDEL  224 (229)
T ss_pred             -CCEEEEEeCCeEEE-eCCHHHH
Confidence             99999999999875 5555444

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0066|consensus

Probab=99.97  E-value=2.3e-30  Score=215.72  Aligned_cols=174  Identities=75%  Similarity=1.172  Sum_probs=163.1

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA   81 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq   81 (184)
                      .|.|-+.|..|+.+.+.+.+||++.|+....++.+++..+|+...++++.+.++..|..||+....+.-++..|||||+.
T Consensus       632 LL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKa  711 (807)
T KOG0066|consen  632 LLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKA  711 (807)
T ss_pred             HHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchH
Confidence            46799999999999999999999999887789999999999988888888999999999999888877789999999999


Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      ||++|-.-+..|+|||||||||+||+++...+.+.|+++.+.|||||||-.++.+..+..|++++..|-++.|.+++|.+
T Consensus       712 RValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkk  791 (807)
T KOG0066|consen  712 RVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKK  791 (807)
T ss_pred             HHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999989888999999999


Q ss_pred             HHHHHhhhhhcCch
Q psy11928        162 ELLEALGEVVNNPS  175 (184)
Q Consensus       162 ~~~~~~~~~~~~~~  175 (184)
                      ++++.+.++..++.
T Consensus       792 EVLdaLGEv~vs~~  805 (807)
T KOG0066|consen  792 EVLDALGEVLVSKK  805 (807)
T ss_pred             HHHHHHHHHhhCCC
Confidence            99999998887754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.1e-29  Score=202.93  Aligned_cols=154  Identities=22%  Similarity=0.251  Sum_probs=119.9

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC--C----HHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL--P----YEKA   54 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~--~----~~~~   54 (184)
                      +|+|+.+|     ++|+|.+++             +..+||++|++.  +.. .++.+++...   .+.  .    .+++
T Consensus        64 ~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  140 (267)
T PRK14235         64 CLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIV  140 (267)
T ss_pred             HHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHH
Confidence            57898874     899998653             235999999874  222 2555554321   111  1    2345


Q ss_pred             HHHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         55 RKQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        55 ~~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      .++++.+|+...   ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+.  +.|||+|||
T Consensus       141 ~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH  220 (267)
T PRK14235        141 ETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH  220 (267)
T ss_pred             HHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            778999999531   223578999999999999999999999999999999999999999999999765  479999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++..+||++++|++|+++. .++.+++
T Consensus       221 ~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~  249 (267)
T PRK14235        221 SMQQAARVSQRTAFFHLGNLVE-VGDTEKM  249 (267)
T ss_pred             CHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999975 4454443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.97  E-value=5.3e-30  Score=222.11  Aligned_cols=154  Identities=22%  Similarity=0.283  Sum_probs=121.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCC-Cc-----cCCHHHHHHHhcCCCHHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHL-TA-----EETPAEYLQRLFNLPYEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l-~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++           +..+||++|++...+ +.     ..++.+++... ....+++.++++.+|++
T Consensus        48 ~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~  126 (490)
T PRK10938         48 ALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGIT  126 (490)
T ss_pred             HHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCH
Confidence            68999999999998643           124899999864111 11     22333332211 01235677899999997


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      +..+ +++++|||||||||+||+||+.+|+++||||||+|||+.++.++.+.|.++   +.|||+||||++++..+||++
T Consensus       127 ~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v  205 (490)
T PRK10938        127 ALLD-RRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFA  205 (490)
T ss_pred             hhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEE
Confidence            6554 589999999999999999999999999999999999999999999999765   679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhH
Q psy11928        142 WVIENQTIEEIDGDFDD  158 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~  158 (184)
                      ++|++|+++. .++.++
T Consensus       206 ~~l~~G~i~~-~~~~~~  221 (490)
T PRK10938        206 GVLADCTLAE-TGEREE  221 (490)
T ss_pred             EEEECCEEEE-eCCHHH
Confidence            9999999875 455544

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=200.87  Aligned_cols=154  Identities=23%  Similarity=0.248  Sum_probs=119.6

Q ss_pred             cccCccc--C---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcC-CC----HHHHH
Q psy11928          2 YAHCDLQ--P---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFN-LP----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~-~~----~~~~~   55 (184)
                      +|+|+++  |   ++|+|.+++             +..++|+||++.  +....++.+++..   ... ..    .+++.
T Consensus        49 ~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~  126 (252)
T PRK14256         49 SINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN--PFPAMSIYDNVIAGYKLNGRVNRSEADEIVE  126 (252)
T ss_pred             HHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC--CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence            5789886  4   689997643             235999999874  3344555555432   111 11    23466


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++..   ....+.+.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++  +.|||+||||
T Consensus       127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~  206 (252)
T PRK14256        127 SSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN  206 (252)
T ss_pred             HHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECC
Confidence            7888899853   1223478999999999999999999999999999999999999999999999765  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      ++++..+||++++|++|++.. .++.++
T Consensus       207 ~~~~~~~~d~i~~l~~G~i~~-~~~~~~  233 (252)
T PRK14256        207 MQQAARVSDYTAFFYMGDLVE-CGETKK  233 (252)
T ss_pred             HHHHHhhCCEEEEEECCEEEE-eCCHHH
Confidence            999999999999999999975 444443

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.97  E-value=2.9e-29  Score=200.14  Aligned_cols=153  Identities=22%  Similarity=0.279  Sum_probs=120.9

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+.+ .+|+|.+++           +..++|+||++.  +....++.+++...  ....    .+++.++++.+|+.
T Consensus        41 ~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~  117 (248)
T PRK03695         41 RMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLD  117 (248)
T ss_pred             HHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH
Confidence            5789885 599998754           134899999863  22344565554422  1111    23567889999997


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLN-------APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI  134 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~-------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~  134 (184)
                      ...+ +++.+||||||||++||||++.       +|+++||||||+|||+.++..+.++|.+.   +.|||++|||++++
T Consensus       118 ~~~~-~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~  196 (248)
T PRK03695        118 DKLG-RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHT  196 (248)
T ss_pred             hHhc-CCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence            6554 5899999999999999999997       67999999999999999999999998754   57999999999999


Q ss_pred             HhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        135 RDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       135 ~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ..+||++++|++|+++. .++.+++
T Consensus       197 ~~~~d~i~~l~~G~i~~-~g~~~~~  220 (248)
T PRK03695        197 LRHADRVWLLKQGKLLA-SGRRDEV  220 (248)
T ss_pred             HHhCCEEEEEECCEEEE-ECCHHHH
Confidence            99999999999999975 5555544

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=200.76  Aligned_cols=154  Identities=21%  Similarity=0.188  Sum_probs=119.9

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+.+|     ++|+|.+++             +..+||+||++.  +.. .++.+++..   ..+. .    .+++.
T Consensus        49 ~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  125 (251)
T PRK14270         49 CLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVE  125 (251)
T ss_pred             HHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHH
Confidence            57898875     799998653             235999999874  333 465555432   1221 1    13456


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++..   ...++++.+||||||||++||||++.+|+++||||||+|||+.++.++.+.|.++  +.|||+||||
T Consensus       126 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~  205 (251)
T PRK14270        126 WALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN  205 (251)
T ss_pred             HHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcC
Confidence            7888888742   1223578999999999999999999999999999999999999999999999765  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||+++++++|+++. .++.++.
T Consensus       206 ~~~~~~~~d~v~~l~~G~i~~-~~~~~~~  233 (251)
T PRK14270        206 MQQASRVSDYTAFFLMGDLIE-FNKTEKI  233 (251)
T ss_pred             HHHHHHhcCEEEEEECCeEEE-eCCHHHH
Confidence            999999999999999999976 4454443

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.9e-29  Score=201.11  Aligned_cols=154  Identities=24%  Similarity=0.231  Sum_probs=119.6

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+.+|     ++|+|.+++             +..+||++|++.  +....++.+++..   ..+. .    .+.+.
T Consensus        49 ~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~  126 (258)
T PRK14241         49 TLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN--PFPTMSIRDNVVAGLKLNGVRNKKDLDELVE  126 (258)
T ss_pred             HHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            58899874     799998753             135999999864  3344455555432   1111 1    13456


Q ss_pred             HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      ++++.+|+.    ... ++++.+|||||||||+||||++.+|+++||||||+|||+.++.++.+.|.+.  +.|||+|||
T Consensus       127 ~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH  205 (258)
T PRK14241        127 KSLRGANLWNEVKDRL-DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH  205 (258)
T ss_pred             HHHHHcCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            778888884    233 3588999999999999999999999999999999999999999999999765  579999999


Q ss_pred             CHHHHHhhcCeEEEEe------CCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIE------NQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~------~g~i~~~~~~~~~~  159 (184)
                      |++++..+||++++++      +|++++ .++.+++
T Consensus       206 ~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~~~~  240 (258)
T PRK14241        206 NMQQAARVSDQTAFFNLEATGKPGRLVE-IDDTEKI  240 (258)
T ss_pred             CHHHHHHhCCEEEEEecccCCCCceEEe-cCCHHHH
Confidence            9999999999999997      798875 4555444

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-29  Score=203.26  Aligned_cols=154  Identities=21%  Similarity=0.201  Sum_probs=118.5

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~   55 (184)
                      +|+|+.+     |++|+|.+++             +..++|+||++.  +.. .++.+++...   ... .    .+.+.
T Consensus        66 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  142 (268)
T PRK14248         66 SINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN--PFP-KSIYNNITHALKYAGERRKSVLDEIVE  142 (268)
T ss_pred             HHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            5788764     7999997642             236999999874  222 3555554321   111 1    13356


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      +.++.+++..   ...++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++  +.|||++|||
T Consensus       143 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~  222 (268)
T PRK14248        143 ESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN  222 (268)
T ss_pred             HHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeC
Confidence            6788888742   1223589999999999999999999999999999999999999999999999765  4799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||++++|++|+++. .++.+++
T Consensus       223 ~~~~~~~~d~v~~l~~G~i~~-~~~~~~~  250 (268)
T PRK14248        223 MQQALRVSDRTAFFLNGDLVE-YDQTEQI  250 (268)
T ss_pred             HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            999999999999999999975 4554443

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.97  E-value=9.9e-30  Score=228.25  Aligned_cols=154  Identities=21%  Similarity=0.325  Sum_probs=126.5

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT-   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-   69 (184)
                      .|+|+++|++|+|.+++           ++.|||++|++.  +. ..|+.+++......+.+++.+.++..|+.+.... 
T Consensus       498 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~l  574 (686)
T TIGR03797       498 LLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR--LM-SGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAM  574 (686)
T ss_pred             HHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCc--cC-cccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhc
Confidence            58999999999998764           457999999984  32 4577777754333456777777877777543221 


Q ss_pred             ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCe
Q psy11928         70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~  140 (184)
                               ....+||||||||++||||++.+|+++|||||||+||+.+.+.+.+.+.+.++|+|+|||+++.+.. ||+
T Consensus       575 p~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~  653 (686)
T TIGR03797       575 PMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADR  653 (686)
T ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCE
Confidence                     1246799999999999999999999999999999999999999999999888999999999999975 899


Q ss_pred             EEEEeCCeEEEecCChhHHH
Q psy11928        141 LWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       141 i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |++|++|++++ .|+.++..
T Consensus       654 Iivl~~G~iv~-~G~~~~Ll  672 (686)
T TIGR03797       654 IYVLDAGRVVQ-QGTYDELM  672 (686)
T ss_pred             EEEEECCEEEE-ECCHHHHH
Confidence            99999999986 66665543

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-29  Score=201.42  Aligned_cols=154  Identities=21%  Similarity=0.280  Sum_probs=118.8

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC--C----HHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL--P----YEKA   54 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~--~----~~~~   54 (184)
                      +|+|+.+     |++|+|.+++             +..++|+||++.  +... ++.+++..   ..+.  .    .+.+
T Consensus        50 ~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~  126 (251)
T PRK14244         50 CFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIV  126 (251)
T ss_pred             HHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            5788876     4799998643             235999999874  2222 55554432   1111  1    1345


Q ss_pred             HHHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         55 RKQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        55 ~~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      .++++.+|+...   ..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.  +.|||++||
T Consensus       127 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH  206 (251)
T PRK14244        127 EKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTH  206 (251)
T ss_pred             HHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            678899998641   123478999999999999999999999999999999999999999999999765  579999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++..+||++++|++|+++. .++.+++
T Consensus       207 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~  235 (251)
T PRK14244        207 SMKQAKKVSDRVAFFQSGRIVE-YNTTQEI  235 (251)
T ss_pred             CHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999975 4454433

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.97  E-value=2.4e-29  Score=198.58  Aligned_cols=153  Identities=25%  Similarity=0.312  Sum_probs=118.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHH---------HHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEK---------ARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~---------~~~~l~~   60 (184)
                      +|+|+.+|++|+|.+++           ++.++|+||++.  +.. .++.+++.... ......         +.+.++.
T Consensus        47 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (234)
T cd03251          47 LIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVF--LFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIME  123 (234)
T ss_pred             HHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCe--ecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHh
Confidence            58999999999998754           245999999874  322 46666654321 112222         2234444


Q ss_pred             C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      +  ++....+ +++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.|.+.  +.|||++|||++++..
T Consensus       124 l~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  202 (234)
T cd03251         124 LPEGYDTVIG-ERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN  202 (234)
T ss_pred             cccCcceeec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence            4  5554444 478999999999999999999999999999999999999999999999765  6799999999999976


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                       ||++++|++|++.. .++.+++.
T Consensus       203 -~d~v~~l~~G~i~~-~~~~~~~~  224 (234)
T cd03251         203 -ADRIVVLEDGKIVE-RGTHEELL  224 (234)
T ss_pred             -CCEEEEecCCeEee-eCCHHHHH
Confidence             99999999999874 55555543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.97  E-value=1.6e-29  Score=197.96  Aligned_cols=146  Identities=23%  Similarity=0.247  Sum_probs=116.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc--
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH--   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--   68 (184)
                      +|+|+.+|++|+|.+++           ++.++|+||++.  +. ..++.+++........+++.+.++.+++.+...  
T Consensus        49 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l  125 (221)
T cd03244          49 ALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPV--LF-SGTIRSNLDPFGEYSDEELWQALERVGLKEFVESL  125 (221)
T ss_pred             HHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCc--cc-cchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhc
Confidence            58999999999998653           346999999874  32 236666553221223445556666666643321  


Q ss_pred             --------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928         69 --------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        69 --------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~  138 (184)
                              .+++.+||+||+||++||||++.+|+++||||||++||+.++..+.+.|++.  +.|||++||+++++.. |
T Consensus       126 ~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~  204 (221)
T cd03244         126 PGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S  204 (221)
T ss_pred             ccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C
Confidence                    2478999999999999999999999999999999999999999999999865  5799999999999976 9


Q ss_pred             CeEEEEeCCeEEE
Q psy11928        139 CTLWVIENQTIEE  151 (184)
Q Consensus       139 ~~i~~l~~g~i~~  151 (184)
                      +++++|++|++..
T Consensus       205 d~i~~l~~g~~~~  217 (221)
T cd03244         205 DRILVLDKGRVVE  217 (221)
T ss_pred             CEEEEEECCeEEe
Confidence            9999999999865

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.4e-29  Score=203.54  Aligned_cols=152  Identities=24%  Similarity=0.262  Sum_probs=118.9

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC---HHHHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP---YEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~---~~~~~~~   57 (184)
                      +|+|+++     |++|+|.+++             ++.++|+||++.  +... ++.+++...   .+..   .+++.++
T Consensus        84 ~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~  160 (285)
T PRK14254         84 CINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN--PFPK-SIYDNVAYGLKIQGYDGDIDERVEES  160 (285)
T ss_pred             HHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc--cCcC-CHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            5789886     6899997643             236999999874  3332 666554321   1111   2456778


Q ss_pred             HhhCCCCc----ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928         58 LGTFGLAG----HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE  131 (184)
Q Consensus        58 l~~~~l~~----~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~  131 (184)
                      ++.+|+..    .. ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++  +.|||++|||+
T Consensus       161 l~~~~l~~~i~~~~-~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~  239 (285)
T PRK14254        161 LRRAALWDEVKDQL-DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNM  239 (285)
T ss_pred             HHHcCCCchhHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            88998852    23 3579999999999999999999999999999999999999999999999876  46999999999


Q ss_pred             HHHHhhcCeEE-EEeCCeEEEecCChhH
Q psy11928        132 RLIRDTECTLW-VIENQTIEEIDGDFDD  158 (184)
Q Consensus       132 ~~~~~~~~~i~-~l~~g~i~~~~~~~~~  158 (184)
                      +++..+||+++ ++++|+++. .++..+
T Consensus       240 ~~i~~~~dri~v~l~~G~i~~-~g~~~~  266 (285)
T PRK14254        240 QQAARISDKTAVFLTGGELVE-FDDTDK  266 (285)
T ss_pred             HHHHhhcCEEEEEeeCCEEEE-eCCHHH
Confidence            99999999975 579999975 455444

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.8e-29  Score=200.34  Aligned_cols=153  Identities=20%  Similarity=0.219  Sum_probs=118.9

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~   55 (184)
                      +|+|+.+     |++|+|.+++             +..++|++|++.  +.. .++.+++...   .+. .    ..++.
T Consensus        49 ~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  125 (251)
T PRK14251         49 CLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVE  125 (251)
T ss_pred             HHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            6889986     4799997643             235999999874  222 4665554321   111 1    13456


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++..   ...++++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+.  +.|||+||||
T Consensus       126 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~  205 (251)
T PRK14251        126 ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN  205 (251)
T ss_pred             HHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            7788888841   1223578999999999999999999999999999999999999999999999865  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      ++++..+||++++|++|++.. .++.++
T Consensus       206 ~~~~~~~~d~i~~l~~G~i~~-~~~~~~  232 (251)
T PRK14251        206 LQQAGRISDQTAFLMNGDLIE-AGPTEE  232 (251)
T ss_pred             HHHHHhhcCEEEEEECCEEEE-eCCHHH
Confidence            999999999999999999975 344433

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.3e-29  Score=198.75  Aligned_cols=154  Identities=21%  Similarity=0.245  Sum_probs=118.0

Q ss_pred             cccCcccCC-----ceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-CH----HHHH
Q psy11928          2 YAHCDLQPQ-----QGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-PY----EKAR   55 (184)
Q Consensus         2 ~~~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~~----~~~~   55 (184)
                      +|+|+++|+     +|+|.+++             +..++|+||++.  +....++.+++...   .+. ..    +.+.
T Consensus        49 ~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~  126 (252)
T PRK14272         49 AINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN--PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE  126 (252)
T ss_pred             HHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc--cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            588998874     89997643             236999999874  33444565554321   111 12    2344


Q ss_pred             HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      ++++.+++.    ... ++++++|||||+||++||||++.+|+++||||||++||+.++..+.+.|++.  +.|||++||
T Consensus       127 ~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH  205 (252)
T PRK14272        127 RSLRGAALWDEVKDRL-KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH  205 (252)
T ss_pred             HHHHHcCcchhhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            556666653    223 3579999999999999999999999999999999999999999999999765  479999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++++..+||++++|++|++++ .++.+++
T Consensus       206 ~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~  234 (252)
T PRK14272        206 NMHQAARVSDTTSFFLVGDLVE-HGPTDQL  234 (252)
T ss_pred             CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999975 4554443

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.97  E-value=1.5e-29  Score=196.08  Aligned_cols=139  Identities=31%  Similarity=0.393  Sum_probs=111.2

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++               ++.++|++|++.  +....++.+++..   ..+..    .+++.++++
T Consensus        43 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~  120 (206)
T TIGR03608        43 IIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALE  120 (206)
T ss_pred             HHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh--hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            58999999999997653               135999999874  3334455554432   11211    245678899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+|++...+ +++.+|||||+||++|||||+.+|+++||||||++||+.++..+.+.|++.   +.|+|++||+++++. 
T Consensus       121 ~~~l~~~~~-~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-  198 (206)
T TIGR03608       121 KVGLNLKLK-QKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-  198 (206)
T ss_pred             HcCchhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-
Confidence            999976654 589999999999999999999999999999999999999999999999764   679999999999774 


Q ss_pred             hcCeEEEE
Q psy11928        137 TECTLWVI  144 (184)
Q Consensus       137 ~~~~i~~l  144 (184)
                      .|+++++|
T Consensus       199 ~~d~i~~l  206 (206)
T TIGR03608       199 QADRVIEL  206 (206)
T ss_pred             hcCEEEeC
Confidence            79998764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.97  E-value=1.8e-29  Score=197.92  Aligned_cols=144  Identities=31%  Similarity=0.404  Sum_probs=115.8

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcC-CC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFN-LP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~-~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++              +..++|+||++.  +....++.+++..   ... ..    ..++.++++
T Consensus        50 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~  127 (220)
T TIGR02982        50 LIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLE  127 (220)
T ss_pred             HHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            58899999999998753              246999999874  3334455554331   111 12    235778899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      .+|+..... +++.+||+|||||++|||+++.+|+++||||||+|||+.++..+.+.|+++    +.|||++|||++.. 
T Consensus       128 ~~~l~~~~~-~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-  205 (220)
T TIGR02982       128 AVGLGDHLD-YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-  205 (220)
T ss_pred             HcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-
Confidence            999976554 589999999999999999999999999999999999999999999888653    68999999999865 


Q ss_pred             hhcCeEEEEeCCeE
Q psy11928        136 DTECTLWVIENQTI  149 (184)
Q Consensus       136 ~~~~~i~~l~~g~i  149 (184)
                      .+||++++|++|++
T Consensus       206 ~~~d~v~~l~~g~~  219 (220)
T TIGR02982       206 DVADRIVHMEDGKL  219 (220)
T ss_pred             hhCCEEEEEECCEE
Confidence            69999999999975

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.4e-29  Score=198.56  Aligned_cols=154  Identities=24%  Similarity=0.231  Sum_probs=118.1

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+.+|     ++|+|.+++             +..++|++|++.  +.. .++.+++..   ..+. .    .+++.
T Consensus        48 ~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~  124 (250)
T PRK14240         48 TLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVE  124 (250)
T ss_pred             HHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            57888763     699998653             235999999874  222 455554432   1121 1    23456


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++..   ...++++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|++.  +.|||+||||
T Consensus       125 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~  204 (250)
T PRK14240        125 KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN  204 (250)
T ss_pred             HHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence            6788887742   1223579999999999999999999999999999999999999999999999765  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||+++++++|+++. .++.+++
T Consensus       205 ~~~~~~~~d~v~~l~~G~i~~-~~~~~~~  232 (250)
T PRK14240        205 MQQASRISDKTAFFLNGEIVE-FGDTVDL  232 (250)
T ss_pred             HHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence            999999999999999999975 4444443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.97  E-value=1.4e-29  Score=198.91  Aligned_cols=141  Identities=21%  Similarity=0.301  Sum_probs=112.8

Q ss_pred             cccCcccCCceeEEec--C-----------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHH
Q psy11928          2 YAHCDLQPQQGELKKN--H-----------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~--~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~   55 (184)
                      +|+|+++|++|+|.++  +                 +..+||+||++.  +....++.+++..   ..+..    .+++.
T Consensus        53 ~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  130 (224)
T TIGR02324        53 SLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR--VIPRVSALEVVAEPLLERGVPREAARARAR  130 (224)
T ss_pred             HHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            5899999999999875  2                 135999999874  3334455444321   11222    23567


Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER  132 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~  132 (184)
                      ++++.+|+.....++++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++.   +.|||+|||+.+
T Consensus       131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~  210 (224)
T TIGR02324       131 ELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE  210 (224)
T ss_pred             HHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            78999999754334589999999999999999999999999999999999999999999998764   679999999999


Q ss_pred             HHHhhcCeEEEE
Q psy11928        133 LIRDTECTLWVI  144 (184)
Q Consensus       133 ~~~~~~~~i~~l  144 (184)
                      ++..+||+++.+
T Consensus       211 ~~~~~~d~i~~~  222 (224)
T TIGR02324       211 VRELVADRVMDV  222 (224)
T ss_pred             HHHHhcceeEec
Confidence            999999998865

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.7e-29  Score=201.51  Aligned_cols=154  Identities=19%  Similarity=0.230  Sum_probs=118.1

Q ss_pred             cccCc---ccC--CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCD---LQP--QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~---~~p--~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      .|+|+   .+|  ++|+|.+++             +..++|+||++.  +.. .++.+++..   ..+. .    ...+.
T Consensus        48 ~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~  124 (250)
T PRK14245         48 LFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVE  124 (250)
T ss_pred             HHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            46665   454  589997653             235999999874  222 355555432   1111 1    23466


Q ss_pred             HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+|+.+.   ..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++.  +.|||+||||
T Consensus       125 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~  204 (250)
T PRK14245        125 ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN  204 (250)
T ss_pred             HHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            78888988531   223578999999999999999999999999999999999999999999999765  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||++++|++|+++. .++.+++
T Consensus       205 ~~~~~~~~d~v~~l~~G~~~~-~~~~~~~  232 (250)
T PRK14245        205 MQQAARVSDKTAFFYMGEMVE-YDDTKKI  232 (250)
T ss_pred             HHHHHhhCCEEEEEECCEEEE-ECCHHHH
Confidence            999999999999999999975 4555444

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.97  E-value=2.6e-29  Score=203.19  Aligned_cols=152  Identities=20%  Similarity=0.222  Sum_probs=122.5

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+++ ++|+|.+++           +..++|+||++.  +.. .++.+++........+++.+.++.+|+....+ +
T Consensus        49 ~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~--lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~-~  123 (275)
T cd03289          49 AFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVF--IFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIE-Q  123 (275)
T ss_pred             HHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcc--cch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHH-h
Confidence            5789987 789998764           346999999974  332 36666653222234567788889999976554 4


Q ss_pred             cccC-----------CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         71 KMKD-----------LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        71 ~~~~-----------LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                      ++..           ||||||||++||||++.+|+++||||||++||+.++..+.+.|.+.  +.|||+|||+++.+.. 
T Consensus       124 ~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-  202 (275)
T cd03289         124 FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-  202 (275)
T ss_pred             CcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-
Confidence            6665           9999999999999999999999999999999999999999999864  5799999999999875 


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||++++|++|++++ .++++++.
T Consensus       203 ~dri~vl~~G~i~~-~g~~~~l~  224 (275)
T cd03289         203 CQRFLVIEENKVRQ-YDSIQKLL  224 (275)
T ss_pred             CCEEEEecCCeEee-cCCHHHHh
Confidence            99999999999986 45555443

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5e-29  Score=198.91  Aligned_cols=154  Identities=21%  Similarity=0.210  Sum_probs=118.1

Q ss_pred             cccCcc--cC---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC-----HHHHH
Q psy11928          2 YAHCDL--QP---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP-----YEKAR   55 (184)
Q Consensus         2 ~~~G~~--~p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~-----~~~~~   55 (184)
                      +|+|+.  .|   ++|+|.+++             +..++|+||++.  +.. .++.+++..   ..+..     .+++.
T Consensus        50 ~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  126 (252)
T PRK14239         50 SINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVE  126 (252)
T ss_pred             HHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            578874  46   599998653             235999999874  222 455555432   11211     13456


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++..   ...++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+.  +.|||++|||
T Consensus       127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~  206 (252)
T PRK14239        127 KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRS  206 (252)
T ss_pred             HHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECC
Confidence            6788888742   1223578999999999999999999999999999999999999999999999765  4799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||++++|++|++.. .++..+.
T Consensus       207 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  234 (252)
T PRK14239        207 MQQASRISDRTGFFLDGDLIE-YNDTKQM  234 (252)
T ss_pred             HHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            999999999999999999975 4554443

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.7e-29  Score=200.59  Aligned_cols=155  Identities=21%  Similarity=0.269  Sum_probs=120.2

Q ss_pred             cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-CH----HHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-PY----EKARK   56 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~~----~~~~~   56 (184)
                      +|+|+.+|++|+|.+++                 +..++|++|++.  +....++.+++...   .+. ..    +.+.+
T Consensus        55 ~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~  132 (257)
T PRK14246         55 VLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEE  132 (257)
T ss_pred             HHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            68999999997664331                 346999999874  33444555554321   111 11    34567


Q ss_pred             HHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928         57 QLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~  131 (184)
                      +++.+++..   ...++++..||+|||||++||||++.+|+++||||||++||+.++.++.+.|.++  +.|||+|||++
T Consensus       133 ~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~  212 (257)
T PRK14246        133 CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNP  212 (257)
T ss_pred             HHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCH
Confidence            888899853   1223578999999999999999999999999999999999999999999999765  47999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++...|+++++|++|++..+ +..+++
T Consensus       213 ~~~~~~~d~v~~l~~g~i~~~-g~~~~~  239 (257)
T PRK14246        213 QQVARVADYVAFLYNGELVEW-GSSNEI  239 (257)
T ss_pred             HHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence            999999999999999999764 444443

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.96  E-value=2e-29  Score=198.33  Aligned_cols=140  Identities=25%  Similarity=0.312  Sum_probs=112.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC--CHHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL--PYEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~   65 (184)
                      +|+|+.+|++|+|.+++           +..++|+||++.  +.. .++.+++..   ....  ..+++.++++.+++..
T Consensus        52 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~  128 (225)
T PRK10247         52 IVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD  128 (225)
T ss_pred             HHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence            68999999999998764           246999999874  333 366665432   1111  2345678899999964


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ...++++.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.+.+.    +.|||++|||++++. .||++
T Consensus       129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i  207 (225)
T PRK10247        129 TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKV  207 (225)
T ss_pred             HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEE
Confidence            2234589999999999999999999999999999999999999999999988753    679999999999996 59999


Q ss_pred             EEEe
Q psy11928        142 WVIE  145 (184)
Q Consensus       142 ~~l~  145 (184)
                      ++|+
T Consensus       208 ~~l~  211 (225)
T PRK10247        208 ITLQ  211 (225)
T ss_pred             EEEe
Confidence            9995

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.8e-29  Score=201.10  Aligned_cols=141  Identities=21%  Similarity=0.198  Sum_probs=111.8

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC---HHHHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP---YEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~---~~~~~~~   57 (184)
                      +|+|+++     |++|+|.+++             +..++|+||++.  +.. .++.+++...   .+..   .+++.++
T Consensus        58 ~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  134 (269)
T PRK14259         58 SLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERS  134 (269)
T ss_pred             HHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHH
Confidence            5788887     6999998653             135999999874  333 3666655321   1111   2345667


Q ss_pred             HhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928         58 LGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE  131 (184)
Q Consensus        58 l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~  131 (184)
                      ++.+++.    ... ++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|.+.  +.|||++|||+
T Consensus       135 l~~~~l~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~  213 (269)
T PRK14259        135 LRKAAVWDECKDKL-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNM  213 (269)
T ss_pred             HHHhCCcchhhhhh-CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            8888763    223 3578999999999999999999999999999999999999999999999765  46999999999


Q ss_pred             HHHHhhcCeEEEEeC
Q psy11928        132 RLIRDTECTLWVIEN  146 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~  146 (184)
                      +++..+||++++|++
T Consensus       214 ~~~~~~~d~i~~l~~  228 (269)
T PRK14259        214 QQAVRVSDMTAFFNA  228 (269)
T ss_pred             HHHHHhcCEEEEEec
Confidence            999999999999996

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.96  E-value=4.8e-29  Score=193.69  Aligned_cols=138  Identities=22%  Similarity=0.282  Sum_probs=111.2

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+.+|++|+|.+++           +..++|+||++.  +.. .++.+++.........++.+.++   +    . +
T Consensus        53 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~l~---~----~-~  121 (207)
T cd03369          53 ALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPT--LFS-GTIRSNLDPFDEYSDEEIYGALR---V----S-E  121 (207)
T ss_pred             HHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCc--ccC-ccHHHHhcccCCCCHHHHHHHhh---c----c-C
Confidence            58999999999998764           346999999974  333 36666653322223333444443   2    2 4


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      ++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|+++  +.|+|++||+.+++.. ||++++|++|+
T Consensus       122 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~  200 (207)
T cd03369         122 GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGE  200 (207)
T ss_pred             CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCE
Confidence            78999999999999999999999999999999999999999999999865  5799999999999976 99999999999


Q ss_pred             EEE
Q psy11928        149 IEE  151 (184)
Q Consensus       149 i~~  151 (184)
                      +..
T Consensus       201 i~~  203 (207)
T cd03369         201 VKE  203 (207)
T ss_pred             EEe
Confidence            864

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.8e-29  Score=198.84  Aligned_cols=154  Identities=19%  Similarity=0.196  Sum_probs=119.8

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+.+|     ++|+|.+++             +..++|+||++.  +.. .++.+++..   ..+. .    .+.+.
T Consensus        48 ~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~  124 (250)
T PRK14262         48 SINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVE  124 (250)
T ss_pred             HHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            57898874     899998653             246999999874  223 455555432   1111 1    12356


Q ss_pred             HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++...   ..++++.+|||||+||++||||++.+|+++||||||+|||+.++.++.+.|.++  +.|||+||||
T Consensus       125 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~  204 (250)
T PRK14262        125 ESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN  204 (250)
T ss_pred             HHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence            67888888532   224589999999999999999999999999999999999999999999999765  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||+++++++|+++. .++.++.
T Consensus       205 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  232 (250)
T PRK14262        205 IGQAIRIADYIAFMYRGELIE-YGPTREI  232 (250)
T ss_pred             HHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence            999999999999999999975 4555443

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.1e-29  Score=199.35  Aligned_cols=154  Identities=24%  Similarity=0.282  Sum_probs=119.5

Q ss_pred             cccCccc--C---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDLQ--P---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+++  |   ++|+|.+++             +..+||+||++.  +.. .++.+++..   ..+. .    .+++.
T Consensus        57 ~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  133 (259)
T PRK14274         57 TLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN--PFP-QSIFDNVAYGPRIHGTKNKKKLQEIVE  133 (259)
T ss_pred             HHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc--ccc-cCHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence            5788887  3   699997643             235999999874  222 256555432   1121 1    12356


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++..   ...++++.+||||||||++|||+++.+|+++||||||+|||+.++..+.+.|.+.  +.|+|+||||
T Consensus       134 ~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~  213 (259)
T PRK14274        134 KSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN  213 (259)
T ss_pred             HHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence            6788888853   1223589999999999999999999999999999999999999999999999775  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||++++|++|+++. .++.+++
T Consensus       214 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  241 (259)
T PRK14274        214 MQQAARVSDQTAFFYMGELVE-CNDTNKM  241 (259)
T ss_pred             HHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            999999999999999999975 4555554

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.96  E-value=3.4e-29  Score=198.30  Aligned_cols=153  Identities=27%  Similarity=0.359  Sum_probs=115.2

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHH---------hh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQL---------GT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l---------~~   60 (184)
                      +|+|+.+|++|+|.+++           +..++|++|++.  +.. .++.+++.... ....+++.+.+         +.
T Consensus        48 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (238)
T cd03249          48 LLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPV--LFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMS  124 (238)
T ss_pred             HHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchh--hhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHh
Confidence            68999999999998754           245999999864  222 35665554211 11122222222         22


Q ss_pred             C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      +  ++..... +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+.  +.|||++|||++++. 
T Consensus       125 l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-  202 (238)
T cd03249         125 LPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-  202 (238)
T ss_pred             hccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-
Confidence            2  3433333 468999999999999999999999999999999999999999999999764  579999999999997 


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      .||++++|++|++.. .++.+++.
T Consensus       203 ~~d~v~~l~~G~i~~-~~~~~~~~  225 (238)
T cd03249         203 NADLIAVLQNGQVVE-QGTHDELM  225 (238)
T ss_pred             hCCEEEEEECCEEEE-eCCHHHHh
Confidence            799999999999864 55555443

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.9e-29  Score=197.85  Aligned_cols=154  Identities=21%  Similarity=0.228  Sum_probs=118.9

Q ss_pred             cccCcccC-----CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC-----HHHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP-----YEKARK   56 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~-----~~~~~~   56 (184)
                      +|+|+.+|     ++|+|.+++            +..++|+||++.  +.. .++.+++..   ..+..     .+++.+
T Consensus        48 ~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~  124 (249)
T PRK14253         48 CLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVER  124 (249)
T ss_pred             HHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHH
Confidence            57898886     599998643            235999999874  333 455555432   11211     123456


Q ss_pred             HHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928         57 QLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~  131 (184)
                      .++.+++..   ...++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.+.  +.|||+|||++
T Consensus       125 ~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~  204 (249)
T PRK14253        125 SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSM  204 (249)
T ss_pred             HHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence            777788742   1223578999999999999999999999999999999999999999999999865  47999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++..+||++++|++|++.. .++.+++
T Consensus       205 ~~~~~~~d~i~~l~~G~i~~-~g~~~~~  231 (249)
T PRK14253        205 QQARRISDRTAFFLMGELVE-HDDTQVI  231 (249)
T ss_pred             HHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            99999999999999999975 4554443

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.96  E-value=5.1e-29  Score=196.04  Aligned_cols=147  Identities=22%  Similarity=0.229  Sum_probs=117.0

Q ss_pred             cccCccc---CCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH---hc--C-CCH----HHHHH-HHh
Q psy11928          2 YAHCDLQ---PQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF--N-LPY----EKARK-QLG   59 (184)
Q Consensus         2 ~~~G~~~---p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~--~-~~~----~~~~~-~l~   59 (184)
                      .|+|+++   |++|+|.+++        ++.++|+||++.  +....++.+++..   ..  . ...    ..+.+ .++
T Consensus        52 ~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~  129 (226)
T cd03234          52 AISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDI--LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR  129 (226)
T ss_pred             HHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCc--cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHH
Confidence            5789998   9999998754        356999999874  3334455554431   11  1 111    12344 788


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH-HHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE-RLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~-~~~~  135 (184)
                      .++++...+ +++++|||||+||++||||++.+|+++||||||+|||+.++..+.+.+++.   +.|+|++||+. +++.
T Consensus       130 ~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~  208 (226)
T cd03234         130 DLALTRIGG-NLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLF  208 (226)
T ss_pred             hhcchhhhc-ccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHH
Confidence            889876554 579999999999999999999999999999999999999999999998754   57999999998 6888


Q ss_pred             hhcCeEEEEeCCeEEE
Q psy11928        136 DTECTLWVIENQTIEE  151 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~  151 (184)
                      .+||+++++++|+++.
T Consensus       209 ~~~d~i~~l~~G~i~~  224 (226)
T cd03234         209 RLFDRILLLSSGEIVY  224 (226)
T ss_pred             HhCCEEEEEeCCEEEe
Confidence            9999999999999864

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6e-29  Score=202.19  Aligned_cols=153  Identities=21%  Similarity=0.231  Sum_probs=119.1

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~   55 (184)
                      +|+|+.+     |++|+|.+++             +..+||++|++.  +.. .++.+++...   ... .    .+.+.
T Consensus        84 ~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  160 (286)
T PRK14275         84 AINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN--PFP-KSIFDNIAYGPRLHGINDKKQLEEIVE  160 (286)
T ss_pred             HHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC--CCc-cCHHHHHHhHHHhcCCCcHHHHHHHHH
Confidence            5788754     4999997643             236999999874  333 3666665421   111 1    13355


Q ss_pred             HHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         56 KQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      ++++.+|+.    +.. ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++  +.|||++||
T Consensus       161 ~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH  239 (286)
T PRK14275        161 KSLRKAALWDEVSDRL-DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTH  239 (286)
T ss_pred             HHHHHhCCccchhhHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            678888873    233 3579999999999999999999999999999999999999999999999865  469999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++..+||++++|++|++.. .++..++
T Consensus       240 ~~~~~~~~~d~i~~L~~G~i~~-~g~~~~~  268 (286)
T PRK14275        240 NMQQASRVSDYTMFFYEGVLVE-HAPTAQL  268 (286)
T ss_pred             CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999975 4555443

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.96  E-value=6.1e-29  Score=200.85  Aligned_cols=154  Identities=24%  Similarity=0.273  Sum_probs=122.0

Q ss_pred             cccCcccCC--------ceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---c----C-C---CH
Q psy11928          2 YAHCDLQPQ--------QGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---F----N-L---PY   51 (184)
Q Consensus         2 ~~~G~~~p~--------~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~----~-~---~~   51 (184)
                      +|+|+++|+        +|+|.+++           ++.++|+||++.  +....++.+++...   .    . .   ..
T Consensus        46 ~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  123 (272)
T PRK13547         46 ALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ--PAFAFSAREIVLLGRYPHARRAGALTHRDG  123 (272)
T ss_pred             HHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC--CCCCCcHHHHHhhcccccccccccCCHHHH
Confidence            589999998        99998754           224899999863  12234566554321   0    0 0   12


Q ss_pred             HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--
Q psy11928         52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEY--  120 (184)
Q Consensus        52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~--  120 (184)
                      +.+.++++.+|+....+ +++.+|||||+|||+|||||+         .+|+++||||||++||+.++..+.+.+.+.  
T Consensus       124 ~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  202 (272)
T PRK13547        124 EIAWQALALAGATALVG-RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLAR  202 (272)
T ss_pred             HHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence            34677899999986654 589999999999999999999         599999999999999999999999988653  


Q ss_pred             --CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        121 --KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       121 --~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                        +.|||+||||++++..+||++++|++|+++. .++.++.
T Consensus       203 ~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  242 (272)
T PRK13547        203 DWNLGVLAIVHDPNLAARHADRIAMLADGAIVA-HGAPADV  242 (272)
T ss_pred             hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-ecCHHHH
Confidence              6799999999999999999999999999875 4555444

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=1.5e-29  Score=196.32  Aligned_cols=140  Identities=26%  Similarity=0.344  Sum_probs=113.3

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC-CCHHHHHHHHhhCCCCccc
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN-LPYEKARKQLGTFGLAGHA   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~~l~~~~l~~~~   67 (184)
                      +|+|+++|++|+|.+++          +..++|++|++.  +....++.+++...   ++ ...+++.++++.+|+....
T Consensus        46 ~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~  123 (204)
T PRK13538         46 ILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPG--IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE  123 (204)
T ss_pred             HHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccc--cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh
Confidence            58999999999998754          235999999863  34445666654321   12 2235678899999997655


Q ss_pred             ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      + +++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.+.   +.|||++|||.+++.....|++.+
T Consensus       124 ~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        124 D-VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             h-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            4 589999999999999999999999999999999999999999999998764   679999999999998866666655

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.3e-29  Score=217.24  Aligned_cols=150  Identities=17%  Similarity=0.262  Sum_probs=116.4

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHH-----HHHHHh---cCC-C----HHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPA-----EYLQRL---FNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~-----~~~~~~---~~~-~----~~~~~   55 (184)
                      .|+|+.+|++|+|.+++            +..+||+||++. ..+....++.     +.+...   .+. .    .+.+.
T Consensus       293 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (491)
T PRK10982        293 TLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQ  372 (491)
T ss_pred             HHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHH
Confidence            58999999999998764            123899999752 1122233322     212111   111 1    23467


Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHH
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDER  132 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~  132 (184)
                      ++++.+++.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+++.+.+   .+.|||+||||++
T Consensus       373 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~  452 (491)
T PRK10982        373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP  452 (491)
T ss_pred             HHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence            7889999953223468999999999999999999999999999999999999999999988854   4789999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEE
Q psy11928        133 LIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~  151 (184)
                      ++..+||++++|++|+++.
T Consensus       453 ~~~~~~d~v~~l~~g~i~~  471 (491)
T PRK10982        453 ELLGITDRILVMSNGLVAG  471 (491)
T ss_pred             HHHhhCCEEEEEECCEEEE
Confidence            9999999999999999874

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=199.60  Aligned_cols=154  Identities=22%  Similarity=0.247  Sum_probs=119.8

Q ss_pred             cccCcccC-----CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC-CCH----HHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN-LPY----EKARK   56 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~-~~~----~~~~~   56 (184)
                      +|+|+++|     ++|+|.+++            +..++|+||++.  +.. .++.+++...   .. ...    ..+.+
T Consensus        66 ~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~  142 (276)
T PRK14271         66 TLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQA  142 (276)
T ss_pred             HHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            57899885     799998653            245999999874  222 4555554321   11 122    23456


Q ss_pred             HHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928         57 QLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~  131 (184)
                      +++.+++...   ...+.+.+|||||+||++|||||+.+|+++||||||++||+.+++.+.+.|++.  ..|||+||||+
T Consensus       143 ~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~  222 (276)
T PRK14271        143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNL  222 (276)
T ss_pred             HHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            7888888632   123478999999999999999999999999999999999999999999999765  47999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++..+||++++|++|+++. .++.+++
T Consensus       223 ~~~~~~~dri~~l~~G~i~~-~g~~~~~  249 (276)
T PRK14271        223 AQAARISDRAALFFDGRLVE-EGPTEQL  249 (276)
T ss_pred             HHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            99999999999999999975 4555444

>PRK13409 putative ATPase RIL; Provisional

Probab=99.96  E-value=3.2e-29  Score=221.08  Aligned_cols=143  Identities=28%  Similarity=0.349  Sum_probs=118.4

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc-CC-CHHHHHHHHhhCCCCcccccccccCCChhH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NL-PYEKARKQLGTFGLAGHAHTIKMKDLSGGQ   79 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~   79 (184)
                      .|+|+++|++|+|.++  ..+||+||++.  +....|+.+++.... .. ....+.++++.+++.+..+ +++.+|||||
T Consensus       384 ~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~LSGGe  458 (590)
T PRK13409        384 LLAGVLKPDEGEVDPE--LKISYKPQYIK--PDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-KNVKDLSGGE  458 (590)
T ss_pred             HHhCCCCCCceEEEEe--eeEEEeccccc--CCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-CCcccCCHHH
Confidence            5899999999999876  57999999864  234456666554321 11 2234678899999986554 6899999999


Q ss_pred             HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q psy11928         80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIE  150 (184)
Q Consensus        80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~  150 (184)
                      ||||+|||||+.+|++|||||||+|||+.++..+.+.|+++    +.|||+||||++++..+||+++++++ ++.
T Consensus       459 ~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~  532 (590)
T PRK13409        459 LQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG  532 (590)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence            99999999999999999999999999999999999999764    68999999999999999999999965 553

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.4e-29  Score=201.55  Aligned_cols=153  Identities=22%  Similarity=0.260  Sum_probs=117.5

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-CH----HHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-PY----EKAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~~----~~~~   55 (184)
                      +|+|+++     |++|+|.+++             +..+||+||++.  +.. .++.+++..   .... ..    ..+.
T Consensus        69 ~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~  145 (271)
T PRK14238         69 TLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVE  145 (271)
T ss_pred             HHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            5789887     6999998653             235999999874  222 366665532   1121 11    2245


Q ss_pred             HHHhhCCC----CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         56 KQLGTFGL----AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l----~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      +.++.+++    .... ++++.+||||||||++|||+|+.+|+++||||||+|||+.++.++.+.|.+.  +.|||+|||
T Consensus       146 ~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH  224 (271)
T PRK14238        146 KSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTH  224 (271)
T ss_pred             HHHHHcCCcchHHHHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEc
Confidence            55666643    3233 3579999999999999999999999999999999999999999999999765  579999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++..+||++++|++|++.. .++..++
T Consensus       225 ~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~  253 (271)
T PRK14238        225 NMQQAARISDKTAFFLNGYVNE-YDDTDKI  253 (271)
T ss_pred             CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999975 4454443

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.96  E-value=4e-29  Score=193.49  Aligned_cols=140  Identities=25%  Similarity=0.317  Sum_probs=115.1

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+.+|++|+|.+++          +..++|++|++.  +....++.+++..... ...+++.++++.+|+....+ +
T Consensus        45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-~  121 (201)
T cd03231          45 ILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPG--IKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-R  121 (201)
T ss_pred             HHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccc--cCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-C
Confidence            58999999999998653          246999999864  3444566666543211 13456788899999986554 5


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      ++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|.++   +.|+|++|||.......|++++.+
T Consensus       122 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         122 PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            89999999999999999999999999999999999999999999999754   689999999999988899998765

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.96  E-value=9.9e-30  Score=193.73  Aligned_cols=131  Identities=27%  Similarity=0.429  Sum_probs=102.7

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA   81 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq   81 (184)
                      +|+|+++|++|+|.+++. .+.   +     ..    ...+....     ..+.++++.+|+.+..+ +++.+|||||+|
T Consensus        44 ~i~G~~~~~~G~v~~~g~-~~~---~-----~~----~~~~~~~i-----~~~~q~l~~~gl~~~~~-~~~~~LS~G~~q  104 (180)
T cd03214          44 TLAGLLKPSSGEILLDGK-DLA---S-----LS----PKELARKI-----AYVPQALELLGLAHLAD-RPFNELSGGERQ  104 (180)
T ss_pred             HHhCCCCCCCcEEEECCE-ECC---c-----CC----HHHHHHHH-----hHHHHHHHHcCCHhHhc-CCcccCCHHHHH
Confidence            578999999999987642 111   0     00    00110000     01112788889976554 589999999999


Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      |++||||++.+|+++||||||++||+.++..+.+.+.+.    +.|+|++||+++++..+||+++++++|++..
T Consensus       105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  178 (180)
T cd03214         105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA  178 (180)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999999999999999998754    5799999999999999999999999998853

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.96  E-value=3.2e-29  Score=225.69  Aligned_cols=154  Identities=25%  Similarity=0.297  Sum_probs=124.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .|+|+++|++|+|.+++           ++.|||+||++.  +. ..|+.+++... ...+.+++.+.++..++.+....
T Consensus       524 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~  600 (710)
T TIGR03796       524 LVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIF--LF-EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITS  600 (710)
T ss_pred             HHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCCh--hh-hccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHh
Confidence            58999999999999864           567999999984  32 45777777543 23456666666666665432211


Q ss_pred             ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcC
Q psy11928         70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~  139 (184)
                                ....+||||||||++||||++.+|+++|||||||+||+.+.+.+.+.+.+.++|+|+|||+++.+.. ||
T Consensus       601 lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D  679 (710)
T TIGR03796       601 RPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CD  679 (710)
T ss_pred             CcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CC
Confidence                      1356799999999999999999999999999999999999999999998888999999999999875 99


Q ss_pred             eEEEEeCCeEEEecCChhHHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      +|++|++|++++ .|+.++..
T Consensus       680 ~Iivl~~G~i~~-~G~~~~Ll  699 (710)
T TIGR03796       680 EIIVLERGKVVQ-RGTHEELW  699 (710)
T ss_pred             EEEEEeCCEEEE-ecCHHHHH
Confidence            999999999986 66665544

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.96  E-value=2.8e-29  Score=221.95  Aligned_cols=154  Identities=23%  Similarity=0.288  Sum_probs=124.4

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT-   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-   69 (184)
                      .|+|+++|++|+|.+++           +..|+|+||++.  +. ..|+.+++......+.+++.+.++.+|+.+.... 
T Consensus       386 lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~--lF-~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~l  462 (592)
T PRK10790        386 LLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPV--VL-ADTFLANVTLGRDISEEQVWQALETVQLAELARSL  462 (592)
T ss_pred             HHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCc--cc-cchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhc
Confidence            58999999999998864           467999999984  32 3467777665434456777777777776532211 


Q ss_pred             ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928         70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~  138 (184)
                               ....+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+.+.  ++|+|+|||+++.+.. |
T Consensus       463 p~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~  541 (592)
T PRK10790        463 PDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-A  541 (592)
T ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-C
Confidence                     134679999999999999999999999999999999999999999999765  5899999999998875 8


Q ss_pred             CeEEEEeCCeEEEecCChhHHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |+|++|++|++++ .|+.++..
T Consensus       542 D~ii~l~~G~i~~-~G~~~~L~  562 (592)
T PRK10790        542 DTILVLHRGQAVE-QGTHQQLL  562 (592)
T ss_pred             CEEEEEECCEEEE-EcCHHHHH
Confidence            9999999999986 66665544

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.96  E-value=1.2e-28  Score=196.61  Aligned_cols=152  Identities=23%  Similarity=0.345  Sum_probs=116.4

Q ss_pred             cccCc--ccCCceeEEecC-----------C-eEEEEEecCCCCCCCccCCHHHHHHHhc-------C---CC----HHH
Q psy11928          2 YAHCD--LQPQQGELKKNH-----------R-LRIGRFDQHSGEHLTAEETPAEYLQRLF-------N---LP----YEK   53 (184)
Q Consensus         2 ~~~G~--~~p~~G~i~~~~-----------~-~~ig~v~q~~~~~l~~~~~~~~~~~~~~-------~---~~----~~~   53 (184)
                      +|+|+  ++|++|+|.+++           + ..++|++|++.  +....++.+++....       .   ..    ..+
T Consensus        52 ~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  129 (252)
T CHL00131         52 VIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPI--EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEI  129 (252)
T ss_pred             HHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccc--ccccccHHHHHHHhhhhhhcccccccccHHHHHHH
Confidence            57897  579999998643           1 14788999864  333344444432110       0   11    134


Q ss_pred             HHHHHhhCCCCc-cccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEe
Q psy11928         54 ARKQLGTFGLAG-HAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVS  128 (184)
Q Consensus        54 ~~~~l~~~~l~~-~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivs  128 (184)
                      +.++++.+|+.. ..+ +++. +|||||+|||+||||++.+|+++||||||+|||+.++..+.+.|.+.   +.|||++|
T Consensus       130 ~~~~l~~~~l~~~~~~-~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~t  208 (252)
T CHL00131        130 INEKLKLVGMDPSFLS-RNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILIT  208 (252)
T ss_pred             HHHHHHHcCCchhhhc-cccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            567899999963 344 4676 59999999999999999999999999999999999999999998754   67999999


Q ss_pred             cCHHHHHhh-cCeEEEEeCCeEEEecCChh
Q psy11928        129 HDERLIRDT-ECTLWVIENQTIEEIDGDFD  157 (184)
Q Consensus       129 Hd~~~~~~~-~~~i~~l~~g~i~~~~~~~~  157 (184)
                      ||++++..+ ||++++|++|+++. .++.+
T Consensus       209 H~~~~~~~~~~d~i~~l~~G~i~~-~~~~~  237 (252)
T CHL00131        209 HYQRLLDYIKPDYVHVMQNGKIIK-TGDAE  237 (252)
T ss_pred             cCHHHHHhhhCCEEEEEeCCEEEE-ecChh
Confidence            999999886 89999999999975 45543

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=198.60  Aligned_cols=153  Identities=21%  Similarity=0.181  Sum_probs=119.4

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~   55 (184)
                      +|+|+++     |++|+|.+++             +..+||+||++.  +.. .++.+++...   .+. .    ..++.
T Consensus        65 ~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~  141 (267)
T PRK14237         65 SLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVE  141 (267)
T ss_pred             HHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence            5789886     5899997643             335999999864  222 3566655321   111 1    23456


Q ss_pred             HHHhhCCCCc----ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         56 KQLGTFGLAG----HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~~----~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      ++++.+++..    .. ++++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+.  +.|||++||
T Consensus       142 ~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH  220 (267)
T PRK14237        142 TSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTH  220 (267)
T ss_pred             HHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            6788888842    23 3589999999999999999999999999999999999999999999998765  479999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++++..+||++++|++|++++ .++..++
T Consensus       221 ~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  249 (267)
T PRK14237        221 NMQQAARASDYTAFFYLGDLIE-YDKTRNI  249 (267)
T ss_pred             CHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999976 4454443

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=4.3e-29  Score=240.22  Aligned_cols=156  Identities=22%  Similarity=0.221  Sum_probs=127.9

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          ++.+||+||++.  +....|+.+++..   ..+..    ++++.++++.+|++
T Consensus       975 iLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~--L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~ 1052 (2272)
T TIGR01257       975 ILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNI--LFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH 1052 (2272)
T ss_pred             HHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence            68999999999998754          346999999864  3344555554432   22222    24567889999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      +..+ +++++|||||||||+||+||+.+|+++||||||+|||+.+++.++++|++.  +.|||++|||++++..+|||++
T Consensus      1053 ~~~~-~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~ 1131 (2272)
T TIGR01257      1053 HKRN-EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIA 1131 (2272)
T ss_pred             hhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE
Confidence            7665 589999999999999999999999999999999999999999999999765  6799999999999999999999


Q ss_pred             EEeCCeEEEecCChhHHHH
Q psy11928        143 VIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       143 ~l~~g~i~~~~~~~~~~~~  161 (184)
                      +|++|+++. .|+...+.+
T Consensus      1132 iL~~GkL~~-~Gs~~~Lk~ 1149 (2272)
T TIGR01257      1132 IISQGRLYC-SGTPLFLKN 1149 (2272)
T ss_pred             EEECCEEEE-ecCHHHHHH
Confidence            999999975 566555544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.96  E-value=1.7e-28  Score=195.27  Aligned_cols=153  Identities=22%  Similarity=0.307  Sum_probs=114.4

Q ss_pred             cccCcc--cCCceeEEecCC------------eEEEEEecCCCCCCCccCCHHHHHHHh------c-C---CC----HHH
Q psy11928          2 YAHCDL--QPQQGELKKNHR------------LRIGRFDQHSGEHLTAEETPAEYLQRL------F-N---LP----YEK   53 (184)
Q Consensus         2 ~~~G~~--~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~~~~~~~~~~------~-~---~~----~~~   53 (184)
                      +|+|+.  +|++|+|.+++.            ..++|++|++.  +....+...+....      . .   ..    .+.
T Consensus        46 ~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (248)
T PRK09580         46 TLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDL  123 (248)
T ss_pred             HHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCch--hccchhHHHHHHHhhhhhhcccccccchHHHHHHH
Confidence            588995  699999987541            35999999864  22221222221100      0 0   01    234


Q ss_pred             HHHHHhhCCCCccccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928         54 ARKQLGTFGLAGHAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH  129 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH  129 (184)
                      +.+.++.+++.....++++. +|||||||||+||||++.+|+++||||||++||+.++..+.+.+++.   +.|||+|||
T Consensus       124 ~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH  203 (248)
T PRK09580        124 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH  203 (248)
T ss_pred             HHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            56778888985333344565 89999999999999999999999999999999999999999987653   679999999


Q ss_pred             CHHHHHhh-cCeEEEEeCCeEEEecCChh
Q psy11928        130 DERLIRDT-ECTLWVIENQTIEEIDGDFD  157 (184)
Q Consensus       130 d~~~~~~~-~~~i~~l~~g~i~~~~~~~~  157 (184)
                      |++++... ||+++++++|+++. .++++
T Consensus       204 ~~~~~~~~~~d~i~~l~~g~i~~-~g~~~  231 (248)
T PRK09580        204 YQRILDYIKPDYVHVLYQGRIVK-SGDFT  231 (248)
T ss_pred             CHHHHHhhhCCEEEEEECCeEEE-eCCHH
Confidence            99999887 89999999999864 55654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=196.65  Aligned_cols=154  Identities=20%  Similarity=0.194  Sum_probs=118.4

Q ss_pred             cccCcccCC-----ceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC-----HHHHH
Q psy11928          2 YAHCDLQPQ-----QGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP-----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~-----~~~~~   55 (184)
                      +|+|+++|+     +|+|.+++             +..++|+||++.  +.. .++.+++...   .+..     .+.+.
T Consensus        49 ~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  125 (251)
T PRK14249         49 ALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN--PFP-KSIFDNVAFGPRMLGTTAQSRLDEVVE  125 (251)
T ss_pred             HHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc--cCc-CcHHHHHhhHHHhcCCChhhHHHHHHH
Confidence            578999987     69997542             346999999974  223 2555554321   1111     12345


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      +.++.+++..   ...++++.+||||||||++||||++.+|+++||||||++||+.++..+.++|.++  +.|||+||||
T Consensus       126 ~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~  205 (251)
T PRK14249        126 KSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHN  205 (251)
T ss_pred             HHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            5677777642   1223589999999999999999999999999999999999999999999998765  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||++++|++|++.. .++..+.
T Consensus       206 ~~~~~~~~d~i~~l~~G~i~~-~~~~~~~  233 (251)
T PRK14249        206 MQQAARASDWTGFLLTGDLVE-YGRTGEI  233 (251)
T ss_pred             HHHHHhhCCEEEEEeCCeEEE-eCCHHHH
Confidence            999999999999999999975 4554443

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=3.9e-29  Score=240.54  Aligned_cols=155  Identities=21%  Similarity=0.259  Sum_probs=125.4

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          ++.|||+||++.  +....|+.+.+.   ...+.+.    +.+.++++.+|+.
T Consensus      1984 mL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~--L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~ 2061 (2272)
T TIGR01257      1984 MLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDA--IDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS 2061 (2272)
T ss_pred             HHhCCCCCCccEEEECCEECcchHHHHhhhEEEEecccc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH
Confidence            68999999999998754          245999999864  333445544432   2223322    3456789999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      +..+ +++++||||||||++||+||+.+|+++||||||+|||+.+++.+++.|.+.   +.|||++||++++++.+||++
T Consensus      2062 ~~~d-k~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV 2140 (2272)
T TIGR01257      2062 LYAD-RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL 2140 (2272)
T ss_pred             HHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence            7665 589999999999999999999999999999999999999999999998754   679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      ++|++|++.. .|+...+.
T Consensus      2141 ~IL~~G~i~~-~Gs~q~Lk 2158 (2272)
T TIGR01257      2141 AIMVKGAFQC-LGTIQHLK 2158 (2272)
T ss_pred             EEEECCEEEE-ECCHHHHH
Confidence            9999999875 45554443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.96  E-value=9.4e-29  Score=195.47  Aligned_cols=152  Identities=23%  Similarity=0.295  Sum_probs=114.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHH---------hh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQL---------GT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l---------~~   60 (184)
                      +|+|+.+|++|+|.+++           +..++|++|++.  +. ..++.+++.... ......+...+         ..
T Consensus        46 ~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~  122 (236)
T cd03253          46 LLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV--LF-NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMR  122 (236)
T ss_pred             HHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCCh--hh-cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHh
Confidence            58999999999998754           235999999974  32 246666654321 11222222222         22


Q ss_pred             C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      +  +++.... +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+.  +.|||++||+.+++..
T Consensus       123 l~~~~~~~~~-~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~  201 (236)
T cd03253         123 FPDGYDTIVG-ERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN  201 (236)
T ss_pred             ccccccchhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence            2  3333333 468899999999999999999999999999999999999999999998754  6799999999999975


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                       ||++++|++|++.. .++.+++
T Consensus       202 -~d~~~~l~~g~i~~-~~~~~~~  222 (236)
T cd03253         202 -ADKIIVLKDGRIVE-RGTHEEL  222 (236)
T ss_pred             -CCEEEEEECCEEEe-eCCHHHH
Confidence             99999999999864 4555444

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.5e-29  Score=213.78  Aligned_cols=153  Identities=28%  Similarity=0.360  Sum_probs=123.5

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .|+|+.+|++|+|.+++           +++++|++|+|.  + ..-|+.+++.... ..+++++.+.++..|+.+....
T Consensus       366 lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~--l-f~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~  442 (559)
T COG4988         366 LLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY--L-FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK  442 (559)
T ss_pred             HHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCc--c-ccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC
Confidence            58999999999999874           467999999985  2 2345667765432 3456777777777776543321


Q ss_pred             -----c----cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928         70 -----I----KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        70 -----~----~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~  138 (184)
                           .    .-..|||||+|||++||||+.+++++|+||||++||.++.+.+.+.|.+.  ++|+|++||++..+.. +
T Consensus       443 p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~  521 (559)
T COG4988         443 PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-A  521 (559)
T ss_pred             CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-C
Confidence                 1    23459999999999999999999999999999999999999999999765  5899999999999986 7


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |+|++|++|++++ .|..++.
T Consensus       522 D~I~vld~G~l~~-~g~~~~L  541 (559)
T COG4988         522 DRIVVLDNGRLVE-QGTHEEL  541 (559)
T ss_pred             CEEEEecCCceec-cCCHHHH
Confidence            9999999999986 5665554

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.96  E-value=3.2e-29  Score=223.47  Aligned_cols=156  Identities=25%  Similarity=0.292  Sum_probs=123.9

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH-   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-   68 (184)
                      .|+|+++|++|+|.+++           |+.||||+|++.  + ..-++.+++.... ..+.+++.+.+...|..++.. 
T Consensus       518 LL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~--L-f~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~  594 (709)
T COG2274         518 LLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF--L-FSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIEN  594 (709)
T ss_pred             HHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch--h-hcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence            57899999999999874           678999999974  2 2345677765432 234455555554444433221 


Q ss_pred             ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhh
Q psy11928         69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDT  137 (184)
Q Consensus        69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~  137 (184)
                               ...-..||||||||++|||||+++|+|||||||||+||+.+.+.+.+.+.+..  .|+|+|||.+..+. .
T Consensus       595 lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~  673 (709)
T COG2274         595 LPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-S  673 (709)
T ss_pred             cccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-h
Confidence                     12467899999999999999999999999999999999999999999998874  89999999999997 5


Q ss_pred             cCeEEEEeCCeEEEecCChhHHHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYRKE  162 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~~~  162 (184)
                      ||+|++|++|++++ .|+.++....
T Consensus       674 adrIiVl~~Gkiv~-~gs~~ell~~  697 (709)
T COG2274         674 ADRIIVLDQGKIVE-QGSHEELLAQ  697 (709)
T ss_pred             ccEEEEccCCceec-cCCHHHHHHh
Confidence            89999999999986 7776665543

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.96  E-value=6.4e-29  Score=187.09  Aligned_cols=119  Identities=27%  Similarity=0.216  Sum_probs=102.6

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA   81 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq   81 (184)
                      +|+|+++|++|+|.++....++|++|++.  +. ..++.+++...                        ++.+|||||||
T Consensus        46 ~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~------------------------~~~~LS~G~~~   98 (166)
T cd03223          46 ALAGLWPWGSGRIGMPEGEDLLFLPQRPY--LP-LGTLREQLIYP------------------------WDDVLSGGEQQ   98 (166)
T ss_pred             HHhcCCCCCCceEEECCCceEEEECCCCc--cc-cccHHHHhhcc------------------------CCCCCCHHHHH
Confidence            58999999999999988888999999874  22 34555543210                        36889999999


Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      |++||||++.+|+++||||||++||+.++..+.+.+.+.+.|+|++|||.++. ..||++++++++.
T Consensus        99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~  164 (166)
T cd03223          99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG  164 (166)
T ss_pred             HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence            99999999999999999999999999999999999998889999999999876 5899999998763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=5.4e-29  Score=189.96  Aligned_cols=122  Identities=25%  Similarity=0.308  Sum_probs=100.6

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      +|+|+++|++|+|.+++            +..++|+||++. ..+....++.+++....    .                
T Consensus        45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~----~----------------  104 (182)
T cd03215          45 ALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS----L----------------  104 (182)
T ss_pred             HHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh----h----------------
Confidence            68999999999998653            236999999853 12334445555432210    0                


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIE  145 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~  145 (184)
                            ||||||||++||||++.+|+++||||||++||+.+++.+.+.+.+.   +.|+|++||+++++..+|+++++++
T Consensus       105 ------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~  178 (182)
T cd03215         105 ------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMY  178 (182)
T ss_pred             ------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEec
Confidence                  9999999999999999999999999999999999999999998764   5799999999999999999999999


Q ss_pred             CCeE
Q psy11928        146 NQTI  149 (184)
Q Consensus       146 ~g~i  149 (184)
                      +|++
T Consensus       179 ~G~i  182 (182)
T cd03215         179 EGRI  182 (182)
T ss_pred             CCcC
Confidence            9864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=197.97  Aligned_cols=154  Identities=24%  Similarity=0.241  Sum_probs=119.6

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~   55 (184)
                      +|+|+.+     |++|+|.+++             +..++|+||++.  +... ++.+++...   .+. .    .+++.
T Consensus        70 ~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~  146 (272)
T PRK14236         70 CFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVE  146 (272)
T ss_pred             HHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            5789887     4899997642             346999999874  2233 665554321   111 1    13466


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++..   ...++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++  +.|||++||+
T Consensus       147 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~  226 (272)
T PRK14236        147 RSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHN  226 (272)
T ss_pred             HHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence            7788888853   1223578999999999999999999999999999999999999999999999765  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+||++++|++|+++. .++.+++
T Consensus       227 ~~~~~~~~d~i~~l~~G~i~~-~g~~~~~  254 (272)
T PRK14236        227 MQQAARVSDYTAFMYMGKLVE-YGDTDTL  254 (272)
T ss_pred             HHHHHhhCCEEEEEECCEEEe-cCCHHHH
Confidence            999999999999999999975 4554443

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.96  E-value=1e-28  Score=194.27  Aligned_cols=146  Identities=25%  Similarity=0.253  Sum_probs=112.7

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCCcccccccccC
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLAGHAHTIKMKD   74 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~   74 (184)
                      +|+|+.+|++|+|.+++.. +....+..  .+.+..++.+++..   .++...    +++.++++.+++.+..+ +++.+
T Consensus        67 ~l~G~~~p~~G~i~~~g~~-~~~~~~~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~  142 (224)
T cd03220          67 LLAGIYPPDSGTVTVRGRV-SSLLGLGG--GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-LPVKT  142 (224)
T ss_pred             HHhCCCCCCceEEEECCEE-chhhcccc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhh
Confidence            5899999999999987532 22111111  12233455444321   122221    34567888899976654 58999


Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928         75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus        75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      ||||||||++||||++.+|+++||||||+|||+.++..+.+.+.+.   +.|||++||+++++..+||+++++++|++..
T Consensus       143 LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  222 (224)
T cd03220         143 YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF  222 (224)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999999999999999999999999999988654   5799999999999999999999999999864

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.4e-28  Score=197.81  Aligned_cols=154  Identities=20%  Similarity=0.181  Sum_probs=117.1

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC---HHHHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP---YEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~---~~~~~~~   57 (184)
                      +|+|+..     |++|+|.+++             +..++|++|++.  +.. .++.+++...   ....   .+++.++
T Consensus        55 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  131 (264)
T PRK14243         55 CFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERS  131 (264)
T ss_pred             HHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHH
Confidence            5778875     4899998653             235999999874  222 3555554321   1111   2345556


Q ss_pred             HhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHH
Q psy11928         58 LGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDER  132 (184)
Q Consensus        58 l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~  132 (184)
                      ++.+++..   ...++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++  +.|||++|||++
T Consensus       132 l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~  211 (264)
T PRK14243        132 LRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQ  211 (264)
T ss_pred             HHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            77777732   1223578999999999999999999999999999999999999999999999765  479999999999


Q ss_pred             HHHhhcCeEEEEe---------CCeEEEecCChhHH
Q psy11928        133 LIRDTECTLWVIE---------NQTIEEIDGDFDDY  159 (184)
Q Consensus       133 ~~~~~~~~i~~l~---------~g~i~~~~~~~~~~  159 (184)
                      ++..+||++++|+         +|++++ .++..++
T Consensus       212 ~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~~~~~  246 (264)
T PRK14243        212 QAARVSDMTAFFNVELTEGGGRYGYLVE-FDRTEKI  246 (264)
T ss_pred             HHHHhCCEEEEEecccccccccCceEEE-eCCHHHH
Confidence            9999999999998         788875 4555444

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.96  E-value=8.1e-29  Score=218.88  Aligned_cols=152  Identities=26%  Similarity=0.322  Sum_probs=121.9

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCc----
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAG----   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----   65 (184)
                      .|+|++ |++|+|.+++           ++.|+|++|++.  +. ..|+.+++... ...+++++.+.++..++.+    
T Consensus       395 lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--LF-~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~  470 (588)
T PRK11174        395 ALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQ--LP-HGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPL  470 (588)
T ss_pred             HHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCc--CC-CcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHh
Confidence            578999 9999998765           457999999984  32 45777877653 2345666666666655432    


Q ss_pred             -------ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         66 -------HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        66 -------~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                             ... ....+||||||||++||||++.+|+++|||||||+||+.+.+.+.+.+.+.  ++|+|+|||+++.+..
T Consensus       471 lp~G~dT~vg-e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~  549 (588)
T PRK11174        471 LPQGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ  549 (588)
T ss_pred             cccccccccc-cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh
Confidence                   221 135679999999999999999999999999999999999999999999775  5799999999998875


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                       ||+|+++++|++++ .|+.++..
T Consensus       550 -aD~Iivl~~G~i~e-~G~~~eL~  571 (588)
T PRK11174        550 -WDQIWVMQDGQIVQ-QGDYAELS  571 (588)
T ss_pred             -CCEEEEEeCCeEee-cCCHHHHH
Confidence             89999999999976 67766554

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.8e-29  Score=189.89  Aligned_cols=148  Identities=24%  Similarity=0.318  Sum_probs=120.1

Q ss_pred             CcccCcccCCceeEEecCC------eEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHhhCCCCccc
Q psy11928          1 MYAHCDLQPQQGELKKNHR------LRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLGTFGLAGHA   67 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~~~~l~~~~   67 (184)
                      ++++|+.+|+.|+|..+++      ..-|.|||++.  +.++.|+.++..   ...+..+    +.+.+++..+|+.+..
T Consensus        49 nl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~--LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~  126 (259)
T COG4525          49 NLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEA--LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE  126 (259)
T ss_pred             HHHhcCcCcccceEEECCEeccCCCccceeEeccCc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc
Confidence            3689999999999988764      24699999975  444555444432   3334433    3467889999998776


Q ss_pred             ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecCHHHHHhhcCeEEE
Q psy11928         68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l----~~~~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      + +++-+|||||||||.|||||+.+|+.|+||||+++||.-+++.+.+++    ++.++.+++||||++++.-+++++++
T Consensus       127 ~-~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvv  205 (259)
T COG4525         127 H-KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVV  205 (259)
T ss_pred             c-cceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEE
Confidence            5 689999999999999999999999999999999999999988776665    45589999999999999999999999


Q ss_pred             EeC--CeEEE
Q psy11928        144 IEN--QTIEE  151 (184)
Q Consensus       144 l~~--g~i~~  151 (184)
                      |..  |+|++
T Consensus       206 lsp~pgRvv~  215 (259)
T COG4525         206 LSPGPGRVVE  215 (259)
T ss_pred             ecCCCceeeE
Confidence            975  67754

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2e-28  Score=196.76  Aligned_cols=154  Identities=18%  Similarity=0.158  Sum_probs=120.3

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC---HHHHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP---YEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~---~~~~~~~   57 (184)
                      +|+|+++|     ++|+|.+++             +..++|+||++.  +. ..++.+++...   ....   .+++.++
T Consensus        53 ~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~  129 (261)
T PRK14263         53 SLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHA  129 (261)
T ss_pred             HHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHH
Confidence            57899886     799997653             235999999874  22 35555554321   1111   2456778


Q ss_pred             HhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHH
Q psy11928         58 LGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDER  132 (184)
Q Consensus        58 l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~  132 (184)
                      ++.+++...   ..++++.+|||||+||++||||++.+|+++||||||+|||+.++.++.+.|++.  +.|+|++||+++
T Consensus       130 l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~  209 (261)
T PRK14263        130 LQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ  209 (261)
T ss_pred             HHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            899988532   123478999999999999999999999999999999999999999999999875  469999999999


Q ss_pred             HHHhhcCeEEEEe--------CCeEEEecCChhHH
Q psy11928        133 LIRDTECTLWVIE--------NQTIEEIDGDFDDY  159 (184)
Q Consensus       133 ~~~~~~~~i~~l~--------~g~i~~~~~~~~~~  159 (184)
                      ++..+||++++|+        +|++++ .++.+++
T Consensus       210 ~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~~~~~  243 (261)
T PRK14263        210 QAIRVADTTAFFSVDISQGTRTGYLVE-MGPTAQI  243 (261)
T ss_pred             HHHHhCCEEEEEecccccccCCceEEE-eCCHHHH
Confidence            9999999999996        799876 4555544

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=195.27  Aligned_cols=148  Identities=23%  Similarity=0.228  Sum_probs=114.2

Q ss_pred             cccCccc--C---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDLQ--P---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+.+  |   ++|+|.+++             +..++|++|++.  +.. .++.+++..   ..+. .    .+++.
T Consensus        50 ~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~  126 (252)
T PRK14255         50 TLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVE  126 (252)
T ss_pred             HHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            5788864  5   589997643             236999999874  223 355555432   1121 1    12345


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      +.++.+++..   ...++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+.  +.|||+||||
T Consensus       127 ~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~  206 (252)
T PRK14255        127 TSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS  206 (252)
T ss_pred             HHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECC
Confidence            5677777631   1223578999999999999999999999999999999999999999999999765  4799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEe
Q psy11928        131 ERLIRDTECTLWVIENQTIEEI  152 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~  152 (184)
                      ++++..+||++++|++|+++..
T Consensus       207 ~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14255        207 MHQASRISDKTAFFLTGNLIEF  228 (252)
T ss_pred             HHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999764

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.3e-28  Score=196.29  Aligned_cols=154  Identities=18%  Similarity=0.172  Sum_probs=119.1

Q ss_pred             cccCcccCC-----ceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928          2 YAHCDLQPQ-----QGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~   55 (184)
                      +|+|+.+|+     +|+|.+++             +..++|+||++.  +.. .++.+++...   .+. .    .+.+.
T Consensus        52 ~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  128 (261)
T PRK14258         52 CLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVE  128 (261)
T ss_pred             HHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            578999885     78886532             235999999864  333 4666554321   111 1    13456


Q ss_pred             HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11928         56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVS  128 (184)
Q Consensus        56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivs  128 (184)
                      ++++.+++...   ..++++.+|||||+||++|||+++.+|+++||||||+|||+.++..+.+.|.+    .+.|||+||
T Consensus       129 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs  208 (261)
T PRK14258        129 SALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS  208 (261)
T ss_pred             HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence            77888887431   22457899999999999999999999999999999999999999999998875    368999999


Q ss_pred             cCHHHHHhhcCeEEEEeC-----CeEEEecCChhHH
Q psy11928        129 HDERLIRDTECTLWVIEN-----QTIEEIDGDFDDY  159 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~-----g~i~~~~~~~~~~  159 (184)
                      ||++++..+||++++|++     |+++. .++.++.
T Consensus       209 H~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~  243 (261)
T PRK14258        209 HNLHQVSRLSDFTAFFKGNENRIGQLVE-FGLTKKI  243 (261)
T ss_pred             CCHHHHHHhcCEEEEEccCCCcCceEEE-eCCHHHH
Confidence            999999999999999999     99875 4555444

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.96  E-value=5.9e-29  Score=195.51  Aligned_cols=143  Identities=26%  Similarity=0.386  Sum_probs=112.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHH---------HHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYE---------KARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~---------~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++           +..++|++|++.  +.. .++.+++..... ....         .+.++++.
T Consensus        59 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~  135 (226)
T cd03248          59 LLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPV--LFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISE  135 (226)
T ss_pred             HHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccH--HHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHh
Confidence            58999999999998764           246999999874  222 355555432111 1111         13456777


Q ss_pred             C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      +  |++.... +++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.+.+.  +.|+|++|||++++..
T Consensus       136 l~~gl~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  214 (226)
T cd03248         136 LASGYDTEVG-EKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER  214 (226)
T ss_pred             ccccccchhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence            7  7766554 479999999999999999999999999999999999999999999999765  4699999999999975


Q ss_pred             hcCeEEEEeCCeE
Q psy11928        137 TECTLWVIENQTI  149 (184)
Q Consensus       137 ~~~~i~~l~~g~i  149 (184)
                       ||++++|++|++
T Consensus       215 -~d~i~~l~~g~i  226 (226)
T cd03248         215 -ADQILVLDGGRI  226 (226)
T ss_pred             -CCEEEEecCCcC
Confidence             999999999864

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.9e-28  Score=197.07  Aligned_cols=153  Identities=20%  Similarity=0.172  Sum_probs=117.4

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC---CHHHHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL---PYEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~---~~~~~~~~   57 (184)
                      +|+|+.+|     ++|+|.+++             +..++|+||++.  +.. .++.+++...   ...   ..+.+.+.
T Consensus        65 ~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~  141 (274)
T PRK14265         65 CFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDS  141 (274)
T ss_pred             HHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHH
Confidence            57888763     689997643             246999999874  222 2555554321   111   12334566


Q ss_pred             HhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928         58 LGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE  131 (184)
Q Consensus        58 l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~  131 (184)
                      ++.+++.    +.. ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++  +.|||++|||+
T Consensus       142 l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~  220 (274)
T PRK14265        142 LRRAAIWEEVKDKL-KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM  220 (274)
T ss_pred             HHHcccchhhHHHh-cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            7777763    223 3578999999999999999999999999999999999999999999999865  57999999999


Q ss_pred             HHHHhhcCeEEEEe---------CCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVIE---------NQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l~---------~g~i~~~~~~~~~~  159 (184)
                      +++..+||++++|+         +|++++ .++..+.
T Consensus       221 ~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g~~~~~  256 (274)
T PRK14265        221 QQASRVADWTAFFNTEIDEYGKRRGKLVE-FSPTEQM  256 (274)
T ss_pred             HHHHHhCCEEEEEecccccccccCceEEE-eCCHHHH
Confidence            99999999999998         799875 4555443

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=202.27  Aligned_cols=153  Identities=24%  Similarity=0.234  Sum_probs=118.6

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH-H----HHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY-E----KAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~-~----~~~   55 (184)
                      .|+|+.+     |++|+|.+++             +..++|+||++.  +. ..++.+++..   ..+... +    .+.
T Consensus       127 ~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~--~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~  203 (329)
T PRK14257        127 NLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT--PF-EMSIFDNVAYGPRNNGINDRKILEKIVE  203 (329)
T ss_pred             HHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc--cC-CCcHHHHHHhHHHhcCCChHHHHHHHHH
Confidence            4678875     6799997532             346999999974  22 2456655542   111221 1    245


Q ss_pred             HHHhhCCCCc----ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         56 KQLGTFGLAG----HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~~----~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      +.++.+++..    ... +++.+||||||||++||||++.+|+||||||||++||+.+...+.+.|.+.  +.|||+|||
T Consensus       204 ~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH  282 (329)
T PRK14257        204 KSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTH  282 (329)
T ss_pred             HHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            6678877632    233 579999999999999999999999999999999999999999999999765  479999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++++..+||+|++|++|++++ .|++.++
T Consensus       283 ~l~~i~~~~Driivl~~G~i~e-~g~~~~l  311 (329)
T PRK14257        283 SMAQAQRISDETVFFYQGWIEE-AGETKTI  311 (329)
T ss_pred             CHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999999999999999986 5555543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.96  E-value=1.5e-28  Score=190.47  Aligned_cols=140  Identities=22%  Similarity=0.251  Sum_probs=107.8

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCC-----------Ccccccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGL-----------AGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~   70 (184)
                      +|+|+.+|++|+|.+++  +|||++|++.  +. ..++.+++........++..+.++.+++           +.... +
T Consensus        50 ~i~G~~~~~~G~i~~~g--~i~~~~q~~~--l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~  123 (204)
T cd03250          50 ALLGELEKLSGSVSVPG--SIAYVSQEPW--IQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIG-E  123 (204)
T ss_pred             HHhCcCCCCCCeEEEcC--EEEEEecCch--hc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceec-C
Confidence            58999999999999877  7999999974  22 3466666543222222233333333333           22233 3


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD-AINEY---KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      ++.+||+|||||++||||++.+|+++||||||++||+.+++.+.+ ++.+.   +.|||++||+++.+.. |+++++|++
T Consensus       124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~  202 (204)
T cd03250         124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDN  202 (204)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeC
Confidence            679999999999999999999999999999999999999998887 45432   5799999999999997 999999998


Q ss_pred             Ce
Q psy11928        147 QT  148 (184)
Q Consensus       147 g~  148 (184)
                      |+
T Consensus       203 G~  204 (204)
T cd03250         203 GR  204 (204)
T ss_pred             CC
Confidence            84

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.96  E-value=1.7e-28  Score=196.61  Aligned_cols=153  Identities=16%  Similarity=0.172  Sum_probs=115.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHH---------HHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARK---------QLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~   61 (184)
                      +|+|+++|++|+|.+++           +..++|++|++.  +.. .++.+++.........++.+         .++.+
T Consensus        66 ~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~  142 (257)
T cd03288          66 AFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPI--LFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSL  142 (257)
T ss_pred             HHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCc--ccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhc
Confidence            58999999999998753           346999999874  322 35544432111111222222         33333


Q ss_pred             --CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         62 --GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 --~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                        |++.... .++.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.+.+.  +.|||++||+++.+.. 
T Consensus       143 ~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-  220 (257)
T cd03288         143 PGGLDAVVT-EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-  220 (257)
T ss_pred             ccccCcEec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-
Confidence              4443333 367899999999999999999999999999999999999999999998764  6799999999999986 


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||++++|++|+++. .++.+++.
T Consensus       221 ~dri~~l~~G~i~~-~g~~~~~~  242 (257)
T cd03288         221 ADLVLVLSRGILVE-CDTPENLL  242 (257)
T ss_pred             CCEEEEEECCEEEE-eCCHHHHH
Confidence            99999999999975 56655543

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.96  E-value=8.4e-29  Score=218.48  Aligned_cols=155  Identities=23%  Similarity=0.271  Sum_probs=122.9

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      .|+|+++|++|+|.+++           +..|+|+||++.  +. ..|+.+++....  ..+.+++.+.++..|+.+...
T Consensus       388 ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~  464 (582)
T PRK11176        388 LLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVH--LF-NDTIANNIAYARTEQYSREQIEEAARMAYAMDFIN  464 (582)
T ss_pred             HHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCce--ee-cchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHH
Confidence            58999999999998764           357999999984  32 356777775421  245667777777766543211


Q ss_pred             c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      +          ....+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+.  ++|+|+|||+++.+. 
T Consensus       465 ~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-  543 (582)
T PRK11176        465 KMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-  543 (582)
T ss_pred             hcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-
Confidence            1          123679999999999999999999999999999999999999999999775  579999999998886 


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      .||+|+++++|++.+ .|+.+++.+
T Consensus       544 ~~D~Ii~l~~g~i~e-~g~~~~l~~  567 (582)
T PRK11176        544 KADEILVVEDGEIVE-RGTHAELLA  567 (582)
T ss_pred             hCCEEEEEECCEEEE-eCCHHHHHh
Confidence            499999999999986 666665543

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.96  E-value=2.4e-28  Score=191.16  Aligned_cols=143  Identities=18%  Similarity=0.261  Sum_probs=108.5

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcc
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH   66 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~   66 (184)
                      +|+|+.+|++|+|.+++               +..++|++|++.  +. ..++.+++.........+..+.++.+++...
T Consensus        46 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~  122 (218)
T cd03290          46 AILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW--LL-NATVEENITFGSPFNKQRYKAVTDACSLQPD  122 (218)
T ss_pred             HHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCc--cc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHH
Confidence            58999999999998643               146999999874  32 3466666543222223334455555555321


Q ss_pred             c----------ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH--HHH---hcCcEEEEEecCH
Q psy11928         67 A----------HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD--AIN---EYKGGVIIVSHDE  131 (184)
Q Consensus        67 ~----------~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~--~l~---~~~~tiiivsHd~  131 (184)
                      .          ...++.+|||||||||+||||++.+|+++||||||++||+.++..+++  ++.   +.+.|+|++||+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~  202 (218)
T cd03290         123 IDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKL  202 (218)
T ss_pred             HHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCh
Confidence            1          123689999999999999999999999999999999999999998877  443   3468999999999


Q ss_pred             HHHHhhcCeEEEEeCCe
Q psy11928        132 RLIRDTECTLWVIENQT  148 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~  148 (184)
                      +++. .||+++++++|.
T Consensus       203 ~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         203 QYLP-HADWIIAMKDGS  218 (218)
T ss_pred             HHHh-hCCEEEEecCCC
Confidence            9986 699999998873

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=5.8e-29  Score=196.90  Aligned_cols=145  Identities=24%  Similarity=0.302  Sum_probs=117.3

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA   81 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq   81 (184)
                      .+.|+++|++|+|.+++..- .        .+.            .....+++.++|+.+|+......+++++|||||+|
T Consensus        58 ~i~~L~~pt~G~i~f~g~~i-~--------~~~------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ  116 (268)
T COG4608          58 LILGLEEPTSGEILFEGKDI-T--------KLS------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ  116 (268)
T ss_pred             HHHcCcCCCCceEEEcCcch-h--------hcc------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence            57899999999998764330 0        011            00113568899999999876566799999999999


Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecC---
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDG---  154 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~---  154 (184)
                      |+.|||||+.+|+++++|||+|+||...+.++.+++.+    ++.|.+++|||+..+..+||++.+|..|++++...   
T Consensus       117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~  196 (268)
T COG4608         117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE  196 (268)
T ss_pred             hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence            99999999999999999999999999999999998864    47899999999999999999999999999988542   


Q ss_pred             ----ChhHHHHHHHHHh
Q psy11928        155 ----DFDDYRKELLEAL  167 (184)
Q Consensus       155 ----~~~~~~~~~~~~~  167 (184)
                          +...|.+.+++..
T Consensus       197 ~~~~p~HpYTk~Ll~a~  213 (268)
T COG4608         197 VFSNPLHPYTKALLSAV  213 (268)
T ss_pred             HhhCCCCHHHHHHHHhC
Confidence                2345666555544

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.96  E-value=1.8e-28  Score=185.67  Aligned_cols=116  Identities=33%  Similarity=0.424  Sum_probs=99.3

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccccc
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~   71 (184)
                      +|+|+.+|++|+|.+++          +..++|+||++.  +....++.+++.                           
T Consensus        45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~~~---------------------------   95 (173)
T cd03230          45 IILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS--LYENLTVRENLK---------------------------   95 (173)
T ss_pred             HHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCc--cccCCcHHHHhh---------------------------
Confidence            58999999999998653          246999999863  334445544431                           


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                         |||||+||++||||++.+|+++||||||++||+.++..+.+.|+++   +.|+|++|||.+++..+||+++++++|+
T Consensus        96 ---LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~  172 (173)
T cd03230          96 ---LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR  172 (173)
T ss_pred             ---cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence               9999999999999999999999999999999999999999999764   5799999999999999999999999986


Q ss_pred             E
Q psy11928        149 I  149 (184)
Q Consensus       149 i  149 (184)
                      +
T Consensus       173 i  173 (173)
T cd03230         173 I  173 (173)
T ss_pred             C
Confidence            4

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.6e-28  Score=194.32  Aligned_cols=154  Identities=20%  Similarity=0.143  Sum_probs=118.6

Q ss_pred             cccCcccC-----CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC-CC----HHHHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN-LP----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~-~~----~~~~~   55 (184)
                      +|+|+++|     ++|+|.+++             +..++|+||++.  +.. .++.+++...   .+ ..    .+.+.
T Consensus        52 ~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  128 (259)
T PRK14260         52 TLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVE  128 (259)
T ss_pred             HHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            57898885     489998653             135999999874  333 5666554321   11 11    13456


Q ss_pred             HHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+++..   ...++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+.  +.|||++|||
T Consensus       129 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~  208 (259)
T PRK14260        129 SALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN  208 (259)
T ss_pred             HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            7788888742   1223578999999999999999999999999999999999999999999999765  4799999999


Q ss_pred             HHHHHhhcCeEEEEe-----CCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIE-----NQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~-----~g~i~~~~~~~~~~  159 (184)
                      ++++..+||++++|+     +|+++. .++..++
T Consensus       209 ~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~  241 (259)
T PRK14260        209 MQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQI  241 (259)
T ss_pred             HHHHHHhcCeEEEEeccCCCCceEEE-eCCHHHH
Confidence            999999999999997     599875 4555443

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.5e-28  Score=194.47  Aligned_cols=153  Identities=21%  Similarity=0.219  Sum_probs=117.5

Q ss_pred             cccCcccC-----CceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCC-----HHH
Q psy11928          2 YAHCDLQP-----QQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLP-----YEK   53 (184)
Q Consensus         2 ~~~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~-----~~~   53 (184)
                      +|+|+.+|     ++|+|.+++               +..+||++|++.  +... ++.+++...   .+..     .++
T Consensus        61 ~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~-tv~eni~~~~~~~~~~~~~~~~~~  137 (265)
T PRK14252         61 CFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN--PFPK-SIFENVAYGLRIRGVKRRSILEER  137 (265)
T ss_pred             HHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc--CCcc-hHHHHHHhHHHHcCCChHHHHHHH
Confidence            57898875     799997642               235999999874  2232 555554321   1111     234


Q ss_pred             HHHHHhhCCCCc---ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEe
Q psy11928         54 ARKQLGTFGLAG---HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVS  128 (184)
Q Consensus        54 ~~~~l~~~~l~~---~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivs  128 (184)
                      +.++++.+++..   ...++++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|.+.  +.|||+||
T Consensus       138 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivt  217 (265)
T PRK14252        138 VENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVT  217 (265)
T ss_pred             HHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEe
Confidence            566777777631   1223578999999999999999999999999999999999999999999999765  46999999


Q ss_pred             cCHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        129 HDERLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      |+++++..+||+++++++|++.. .++.++
T Consensus       218 h~~~~~~~~~d~i~~l~~G~i~~-~g~~~~  246 (265)
T PRK14252        218 HNMQQAARVSDYTAYMYMGELIE-FGATDT  246 (265)
T ss_pred             cCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence            99999999999999999999976 444444

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.96  E-value=5.2e-28  Score=208.23  Aligned_cols=152  Identities=18%  Similarity=0.215  Sum_probs=117.1

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCCcccccccccC
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLAGHAHTIKMKD   74 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~   74 (184)
                      +|+|+.+|++|+|.+++...  ++.+.+  .+....++.+++..   ..+...    +.+.++++.+++....+ +++.+
T Consensus        69 iLaGLl~P~sGeI~I~G~~~--~i~~~~--~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-~~~~~  143 (549)
T PRK13545         69 LIAGVTMPNKGTVDIKGSAA--LIAISS--GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-QPVKT  143 (549)
T ss_pred             HHhCCCCCCceEEEECCEee--eEEecc--ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-CCccc
Confidence            58999999999999876431  222222  12233455554322   122222    23556889999976655 58999


Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928         75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus        75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++   +.|||+||||++++..+||++++|++|++..
T Consensus       144 LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~  223 (549)
T PRK13545        144 YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE  223 (549)
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999998654   6799999999999999999999999999875


Q ss_pred             ecCChhHH
Q psy11928        152 IDGDFDDY  159 (184)
Q Consensus       152 ~~~~~~~~  159 (184)
                       .++.++.
T Consensus       224 -~G~~~el  230 (549)
T PRK13545        224 -YGDIKEV  230 (549)
T ss_pred             -ECCHHHH
Confidence             4555443

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.8e-28  Score=198.06  Aligned_cols=153  Identities=22%  Similarity=0.232  Sum_probs=118.3

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHhc---------------C
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---------------N   48 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---------------~   48 (184)
                      +|+|+++     |++|+|.+++             +..++|+||++.  +.. .++.+++....               .
T Consensus        90 ~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  166 (305)
T PRK14264         90 CLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN--PFP-KSIRENISYGPRKHGDINTGLLARLLG  166 (305)
T ss_pred             HHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc--ccc-ccHHHHHHhHHhhcccccccccccccc
Confidence            5789886     6899998653             236999999874  222 35555543210               0


Q ss_pred             CC-----HHHHHHHHhhCCCC----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928         49 LP-----YEKARKQLGTFGLA----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE  119 (184)
Q Consensus        49 ~~-----~~~~~~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  119 (184)
                      ..     .+.+.++++.+++.    ... ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus       167 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~  245 (305)
T PRK14264        167 RDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE  245 (305)
T ss_pred             cCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            10     23466778888874    223 357899999999999999999999999999999999999999999999987


Q ss_pred             c--CcEEEEEecCHHHHHhhcCeE-EEEeCCeEEEecCChhHH
Q psy11928        120 Y--KGGVIIVSHDERLIRDTECTL-WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       120 ~--~~tiiivsHd~~~~~~~~~~i-~~l~~g~i~~~~~~~~~~  159 (184)
                      +  +.|||+||||++++..+|+++ +++++|+++. .++.+++
T Consensus       246 ~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~-~g~~~~~  287 (305)
T PRK14264        246 LAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE-YDDTDKI  287 (305)
T ss_pred             HhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE-eCCHHHH
Confidence            6  469999999999999999996 5779999975 5555544

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.96  E-value=1.3e-28  Score=186.40  Aligned_cols=113  Identities=28%  Similarity=0.472  Sum_probs=95.9

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+++|++|+|.+++           +..++|++|++.  +.. .++.+++                           
T Consensus        47 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~l---------------------------   96 (173)
T cd03246          47 LILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE--LFS-GSIAENI---------------------------   96 (173)
T ss_pred             HHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCc--ccc-CcHHHHC---------------------------
Confidence            58899999999998764           346899999863  222 2444332                           


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                          |||||+||++||||++.+|+++||||||++||+.++..+.+.+.+.   +.|||+||||.+++. .||++++|++|
T Consensus        97 ----LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G  171 (173)
T cd03246          97 ----LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDG  171 (173)
T ss_pred             ----cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence                9999999999999999999999999999999999999999998654   579999999999985 79999999998


Q ss_pred             eE
Q psy11928        148 TI  149 (184)
Q Consensus       148 ~i  149 (184)
                      ++
T Consensus       172 ~i  173 (173)
T cd03246         172 RV  173 (173)
T ss_pred             CC
Confidence            64

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.96  E-value=3.5e-28  Score=200.62  Aligned_cols=147  Identities=27%  Similarity=0.379  Sum_probs=117.0

Q ss_pred             eEEEEEecCCCCCCCccCCHHH----HHHHhcCCC----HHHHHHHHhhCCCCcc--cccccccCCChhHHHHHHHHHHH
Q psy11928         20 LRIGRFDQHSGEHLTAEETPAE----YLQRLFNLP----YEKARKQLGTFGLAGH--AHTIKMKDLSGGQKARVALAELT   89 (184)
Q Consensus        20 ~~ig~v~q~~~~~l~~~~~~~~----~~~~~~~~~----~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~laral   89 (184)
                      .+|+++||+|...+.+-.++..    .+....+..    ++++.++|+.+|+.+.  ..+.+|++|||||||||.||.||
T Consensus        93 ~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMAL  172 (534)
T COG4172          93 NKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMAL  172 (534)
T ss_pred             cceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHH
Confidence            4799999999655666555432    232223333    3567789999999642  22458999999999999999999


Q ss_pred             hcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecC-------ChhH
Q psy11928         90 LNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDG-------DFDD  158 (184)
Q Consensus        90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~-------~~~~  158 (184)
                      +++|++||.||||.+||...+.+++++|++    +|.++++||||+..+.+++|+|++|..|++++.+.       +...
T Consensus       173 an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHp  252 (534)
T COG4172         173 ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHP  252 (534)
T ss_pred             cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCCh
Confidence            999999999999999999999999999975    47899999999999999999999999999987332       2345


Q ss_pred             HHHHHHHH
Q psy11928        159 YRKELLEA  166 (184)
Q Consensus       159 ~~~~~~~~  166 (184)
                      |.+.+++.
T Consensus       253 YTr~Ll~a  260 (534)
T COG4172         253 YTRKLLAA  260 (534)
T ss_pred             HHHHHHhc
Confidence            66666554

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.96  E-value=3.1e-28  Score=214.78  Aligned_cols=153  Identities=26%  Similarity=0.331  Sum_probs=125.3

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .|+|+++|++|+|.+++           +..|+|++|++.  +. ..|+.+++... ...+.+++.+.++.+++.+....
T Consensus       385 ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~  461 (574)
T PRK11160        385 LLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH--LF-SATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED  461 (574)
T ss_pred             HHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccch--hh-cccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence            58999999999998764           356999999984  32 34777776543 23456778888888888654321


Q ss_pred             ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928         70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~  138 (184)
                               ....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+.  ++|+|+|||+++.+.. |
T Consensus       462 p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~  540 (574)
T PRK11160        462 DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-F  540 (574)
T ss_pred             ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-C
Confidence                     135679999999999999999999999999999999999999999999865  6799999999999875 9


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |+|++|++|++++ .|+.++.
T Consensus       541 d~i~~l~~G~i~~-~g~~~~l  560 (574)
T PRK11160        541 DRICVMDNGQIIE-QGTHQEL  560 (574)
T ss_pred             CEEEEEeCCeEEE-eCCHHHH
Confidence            9999999999986 5665544

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.96  E-value=2.9e-28  Score=219.04  Aligned_cols=154  Identities=25%  Similarity=0.328  Sum_probs=123.4

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .|+|+++|++|+|.+++           +..+||++|++.  +. ..|+.+++.... ..+.+++.+.++..++.+....
T Consensus       510 lL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~--lf-~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~  586 (694)
T TIGR03375       510 LLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPR--LF-YGTLRDNIALGAPYADDEEILRAAELAGVTEFVRR  586 (694)
T ss_pred             HHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChh--hh-hhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHh
Confidence            57899999999998864           467999999984  32 347777776432 2456677777766665432211


Q ss_pred             ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                                ....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+.  ++|+|+|||+++.+. .
T Consensus       587 lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~  665 (694)
T TIGR03375       587 HPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-L  665 (694)
T ss_pred             CcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-h
Confidence                      134689999999999999999999999999999999999999999999875  589999999999885 6


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||+|++|++|++++ .|+.+++.
T Consensus       666 ~D~iivl~~G~i~e-~G~~~eLl  687 (694)
T TIGR03375       666 VDRIIVMDNGRIVA-DGPKDQVL  687 (694)
T ss_pred             CCEEEEEeCCEEEe-eCCHHHHH
Confidence            89999999999986 56655543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.96  E-value=9.3e-29  Score=214.36  Aligned_cols=150  Identities=17%  Similarity=0.191  Sum_probs=115.3

Q ss_pred             cccCcccC-CceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-------c-CCC---HHHHHHH
Q psy11928          2 YAHCDLQP-QQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------F-NLP---YEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~p-~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~-~~~---~~~~~~~   57 (184)
                      +|+|+.+| ++|+|.+++            +..+||++|++........++.+++...       + ...   .+++.++
T Consensus       305 ~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (490)
T PRK10938        305 LITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQW  384 (490)
T ss_pred             HHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHH
Confidence            58898765 699998753            2359999997631111123333332210       0 111   2356788


Q ss_pred             HhhCCCCc-ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---C-cEEEEEecCHH
Q psy11928         58 LGTFGLAG-HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---K-GGVIIVSHDER  132 (184)
Q Consensus        58 l~~~~l~~-~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~-~tiiivsHd~~  132 (184)
                      ++.+|+.. .. ++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|.++   + .|||+||||++
T Consensus       385 l~~~~l~~~~~-~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~  463 (490)
T PRK10938        385 LDILGIDKRTA-DAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE  463 (490)
T ss_pred             HHHcCCchhhc-cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Confidence            99999986 44 4589999999999999999999999999999999999999999999999764   3 47999999999


Q ss_pred             HHHh-hcCeEEEEeCCeEEEe
Q psy11928        133 LIRD-TECTLWVIENQTIEEI  152 (184)
Q Consensus       133 ~~~~-~~~~i~~l~~g~i~~~  152 (184)
                      ++.. +|+++++|++|+++.+
T Consensus       464 ~~~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        464 DAPACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             hhhhhhheeEEEecCCceEEe
Confidence            9987 5899999999998653

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.96  E-value=3.5e-28  Score=184.84  Aligned_cols=118  Identities=31%  Similarity=0.374  Sum_probs=100.5

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccccc
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~   71 (184)
                      +|+|+.+|++|+|.+++          +..++|++|++.  +.. .++.+++                            
T Consensus        47 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~i----------------------------   95 (178)
T cd03247          47 LLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPY--LFD-TTLRNNL----------------------------   95 (178)
T ss_pred             HHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe--eec-ccHHHhh----------------------------
Confidence            58999999999998764          245999999863  222 3443332                            


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIENQTI  149 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~i  149 (184)
                      +.+|||||+||++||||++.+|+++||||||++||+.+++.+.+.+.+.  +.|||++||+.+++. .|++++++++|++
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i  174 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKI  174 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEE
Confidence            6789999999999999999999999999999999999999999999765  679999999999997 6999999999998


Q ss_pred             EE
Q psy11928        150 EE  151 (184)
Q Consensus       150 ~~  151 (184)
                      .+
T Consensus       175 ~~  176 (178)
T cd03247         175 IM  176 (178)
T ss_pred             Ee
Confidence            64

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.96  E-value=2.7e-28  Score=219.68  Aligned_cols=154  Identities=24%  Similarity=0.279  Sum_probs=122.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      .|+|+++|++|+|.+++           ++.|||+||++.  +. ..|+.+++...  ...+.+++.+.++..++.+...
T Consensus       519 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~  595 (708)
T TIGR01193       519 LLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPY--IF-SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIE  595 (708)
T ss_pred             HHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCce--eh-hHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHH
Confidence            58899999999999875           457999999984  32 34777777643  2345566666666665532211


Q ss_pred             ----------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-CcEEEEEecCHHHHHhh
Q psy11928         69 ----------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        69 ----------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~~~~  137 (184)
                                .....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.|.+. ++|+|+|||+++.+. .
T Consensus       596 ~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~  674 (708)
T TIGR01193       596 NMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-Q  674 (708)
T ss_pred             hcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-c
Confidence                      1245789999999999999999999999999999999999999999999875 579999999999886 5


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||+|++|++|++++ .|+.++..
T Consensus       675 ~D~i~~l~~G~i~~-~G~~~~L~  696 (708)
T TIGR01193       675 SDKIIVLDHGKIIE-QGSHDELL  696 (708)
T ss_pred             CCEEEEEECCEEEE-ECCHHHHH
Confidence            99999999999976 66665543

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.8e-28  Score=191.95  Aligned_cols=153  Identities=22%  Similarity=0.209  Sum_probs=117.4

Q ss_pred             cccCccc--C---CceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-C----HHHHH
Q psy11928          2 YAHCDLQ--P---QQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~----~~~~~   55 (184)
                      +|+|+..  |   ++|+|.+++             +..++|+||++.  +.. .++.+++..   ..+. .    ...+.
T Consensus        51 ~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~  127 (253)
T PRK14261         51 CFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVE  127 (253)
T ss_pred             HHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHH
Confidence            5788765  3   489997643             235999999874  222 366655432   1111 1    12456


Q ss_pred             HHHhhCCCCc----ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEec
Q psy11928         56 KQLGTFGLAG----HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~~----~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsH  129 (184)
                      ++++.+++..    .. ++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++  +.|||++||
T Consensus       128 ~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh  206 (253)
T PRK14261        128 KSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTH  206 (253)
T ss_pred             HHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEc
Confidence            6778887742    23 3578999999999999999999999999999999999999999999999765  479999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +++++..+||++++|++|+++. .++.+++
T Consensus       207 ~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~  235 (253)
T PRK14261        207 NMQQAARVSDYTGFMYLGKLIE-FDKTTQI  235 (253)
T ss_pred             CHHHHHhhCCEEEEEECCEEEE-cCCHHHH
Confidence            9999999999999999999975 4555443

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.96  E-value=1.3e-27  Score=193.96  Aligned_cols=151  Identities=20%  Similarity=0.244  Sum_probs=112.2

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccc----------cccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHA----------HTIK   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~   71 (184)
                      +|+|+++|++|+|.+++  .++|++|++.  +.. .++.+++.........++.+.++.+++....          ...+
T Consensus        82 ~I~Gl~~p~~G~I~i~g--~i~yv~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~  156 (282)
T cd03291          82 LILGELEPSEGKIKHSG--RISFSSQFSW--IMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG  156 (282)
T ss_pred             HHhCCCCCCCcEEEECC--EEEEEeCccc--ccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCC
Confidence            68999999999999876  5999999874  333 3666665432111222233444444443211          1124


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-Hh--cCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-NE--YKGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~--~~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      +.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.+ ..  .+.|||++|||++++. .||++++|++|+
T Consensus       157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~  235 (282)
T cd03291         157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS  235 (282)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCE
Confidence            6799999999999999999999999999999999999999888754 33  2679999999999985 799999999999


Q ss_pred             EEEecCChhHH
Q psy11928        149 IEEIDGDFDDY  159 (184)
Q Consensus       149 i~~~~~~~~~~  159 (184)
                      +.. .++..++
T Consensus       236 i~~-~g~~~~~  245 (282)
T cd03291         236 SYF-YGTFSEL  245 (282)
T ss_pred             EEE-ECCHHHH
Confidence            875 4554444

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.96  E-value=2.7e-28  Score=214.70  Aligned_cols=153  Identities=22%  Similarity=0.262  Sum_probs=122.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      .|+|+++|++|+|.+++           +..++|+||+|.  + ...|+.+++....  ..+.+++.+.++.+|+.+...
T Consensus       377 lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~  453 (571)
T TIGR02203       377 LIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV--L-FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVD  453 (571)
T ss_pred             HHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc--c-ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHH
Confidence            57899999999999875           456999999984  3 2456777765432  345677777777777653221


Q ss_pred             c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      +          ..-..||||||||++||||++.+|++++|||||++||..+.+.+++.|.+.  ++|+|+|||+.+.+. 
T Consensus       454 ~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-  532 (571)
T TIGR02203       454 KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-  532 (571)
T ss_pred             hCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-
Confidence            1          123579999999999999999999999999999999999999999999876  579999999998875 


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .||+|+++++|++++ .|+.++.
T Consensus       533 ~~D~ii~l~~g~i~~-~g~~~~l  554 (571)
T TIGR02203       533 KADRIVVMDDGRIVE-RGTHNEL  554 (571)
T ss_pred             hCCEEEEEeCCEEEe-eCCHHHH
Confidence            599999999999976 5555544

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=4.8e-28  Score=188.27  Aligned_cols=139  Identities=27%  Similarity=0.277  Sum_probs=111.5

Q ss_pred             cccCcccCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+.+|++|+|.+++        +..++|++|++.  +....++.+++..   ..+...+++.++++.+|+.... ++
T Consensus        47 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~  123 (207)
T PRK13539         47 LIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNA--MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HL  123 (207)
T ss_pred             HHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCc--CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cC
Confidence            58899999999998764        235899998753  3334555555432   2222345678899999997654 45


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIE  145 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~  145 (184)
                      ++++||||||||++||||++.+|+++||||||+|||+.++.++.+.|++.   +.|||++||+.+++..  ++++.++
T Consensus       124 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~  199 (207)
T PRK13539        124 PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLG  199 (207)
T ss_pred             ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeec
Confidence            89999999999999999999999999999999999999999999999764   6899999999999986  7776664

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.8e-28  Score=193.09  Aligned_cols=154  Identities=21%  Similarity=0.233  Sum_probs=118.2

Q ss_pred             cccCccc-----CCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCC-C----HHHHH
Q psy11928          2 YAHCDLQ-----PQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNL-P----YEKAR   55 (184)
Q Consensus         2 ~~~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~-~----~~~~~   55 (184)
                      +|+|+..     |++|+|.+++             +..++|+||++.  +.. .++.+++...   .+. .    .+++.
T Consensus        48 ~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~  124 (250)
T PRK14266         48 TLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN--PFP-KSIFDNVAYGLRIHGEDDEDFIEERVE  124 (250)
T ss_pred             HHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc--cCc-chHHHHHHhHHhhcCCCCHHHHHHHHH
Confidence            5778754     4899997643             235999999874  222 2555554321   111 1    13456


Q ss_pred             HHHhhCCCCcc---cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11928         56 KQLGTFGLAGH---AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~~---~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd  130 (184)
                      ++++.+|+...   ..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.+.  +.|||++||+
T Consensus       125 ~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~  204 (250)
T PRK14266        125 ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN  204 (250)
T ss_pred             HHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            67888887421   223578999999999999999999999999999999999999999999999764  5799999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++..+|++++++++|++.. .++.+++
T Consensus       205 ~~~~~~~~~~i~~l~~G~i~~-~g~~~~~  232 (250)
T PRK14266        205 MQQATRVSKYTSFFLNGEIIE-SGLTDQI  232 (250)
T ss_pred             HHHHHhhcCEEEEEECCeEEE-eCCHHHH
Confidence            999999999999999999975 5555544

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.95  E-value=2.6e-28  Score=187.22  Aligned_cols=130  Identities=29%  Similarity=0.392  Sum_probs=102.3

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~   61 (184)
                      +|+|+.+|++|+|.+++             ++.++|+||++...+. ..++.+++..   ..+..    .+++.++++.+
T Consensus        37 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~  115 (190)
T TIGR01166        37 HLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAV  115 (190)
T ss_pred             HHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            58999999999997653             2358999998631122 2355555432   12222    13467789999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL  133 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~  133 (184)
                      |+.+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+.   +.|||+||||+++
T Consensus       116 ~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       116 GASGLRE-RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             Cchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            9976554 589999999999999999999999999999999999999999999998764   6799999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.95  E-value=6e-28  Score=177.86  Aligned_cols=100  Identities=43%  Similarity=0.758  Sum_probs=94.2

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA   81 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq   81 (184)
                      +|+|+.+|++|+|.+++...++|++|                                               ||+||+|
T Consensus        45 ~l~G~~~~~~G~i~~~~~~~i~~~~~-----------------------------------------------lS~G~~~   77 (144)
T cd03221          45 LIAGELEPDEGIVTWGSTVKIGYFEQ-----------------------------------------------LSGGEKM   77 (144)
T ss_pred             HHcCCCCCCceEEEECCeEEEEEEcc-----------------------------------------------CCHHHHH
Confidence            57899999999998887778888887                                               9999999


Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      |++||||++.+|+++|+||||++||+.++..+.+.+++.+.|+|++||+.+++..+||+++++++|+
T Consensus        78 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          78 RLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            9999999999999999999999999999999999999888899999999999999999999999885

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.95  E-value=6.2e-28  Score=217.37  Aligned_cols=154  Identities=22%  Similarity=0.269  Sum_probs=120.1

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .|+|+++|++|+|.+++           +++|+|++|++.  + ...|+.+++... ...+++++.+.++..++.+...+
T Consensus       526 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--l-F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~  602 (711)
T TIGR00958       526 LLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV--L-FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIME  602 (711)
T ss_pred             HHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc--c-cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence            57899999999998875           457999999984  3 245777777543 22345667777776665432211


Q ss_pred             ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcC
Q psy11928         70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~  139 (184)
                                ....+||||||||++||||++.+|+|+|||||||+||+.+.+.+.+.....++|+|+|||+++.+.. ||
T Consensus       603 lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~-aD  681 (711)
T TIGR00958       603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER-AD  681 (711)
T ss_pred             CCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh-CC
Confidence                      1346799999999999999999999999999999999999999988333346899999999998864 89


Q ss_pred             eEEEEeCCeEEEecCChhHHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      +|++|++|++++ .|+.++..
T Consensus       682 ~IivL~~G~ive-~Gt~~eL~  701 (711)
T TIGR00958       682 QILVLKKGSVVE-MGTHKQLM  701 (711)
T ss_pred             EEEEEECCEEEE-eeCHHHHH
Confidence            999999999986 56665543

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.95  E-value=7.7e-28  Score=212.70  Aligned_cols=153  Identities=25%  Similarity=0.373  Sum_probs=119.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccc--
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHA--   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~--   67 (184)
                      .|+|+++|++|+|.+++           +..|+|+||++.  +. ..|+.+++... ...+++++.+.++.+++.+..  
T Consensus       380 lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~  456 (588)
T PRK13657        380 LLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG--LF-NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIER  456 (588)
T ss_pred             HHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHh
Confidence            58999999999998764           457999999984  32 45677776543 233456666666665543211  


Q ss_pred             -----c---cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         68 -----H---TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        68 -----~---~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                           +   ......||||||||++|||||+.+|+++||||||++||+.+...+.+.+.+.  ++|+|+|||+.+.+. .
T Consensus       457 lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~  535 (588)
T PRK13657        457 KPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-N  535 (588)
T ss_pred             CcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-h
Confidence                 1   1134579999999999999999999999999999999999999999999765  589999999999886 5


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|++.+ .|+.++.
T Consensus       536 ~D~ii~l~~G~i~~-~g~~~~l  556 (588)
T PRK13657        536 ADRILVFDNGRVVE-SGSFDEL  556 (588)
T ss_pred             CCEEEEEECCEEEE-eCCHHHH
Confidence            99999999999976 4554443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.95  E-value=6e-28  Score=183.58  Aligned_cols=117  Identities=30%  Similarity=0.324  Sum_probs=97.1

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      +|+|+++|++|+|.+++             +..++|++|++.  +....++.+++...                      
T Consensus        45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~----------------------  100 (178)
T cd03229          45 CIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA--LFPHLTVLENIALG----------------------  100 (178)
T ss_pred             HHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc--cCCCCCHHHheeec----------------------
Confidence            58899999999997643             235899998863  33334543332110                      


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                            ||||||||++||||++.+|+++||||||+|||+.++..+.+.+.+.    +.|+|+||||++++..+||++++|
T Consensus       101 ------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  174 (178)
T cd03229         101 ------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVL  174 (178)
T ss_pred             ------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence                  9999999999999999999999999999999999999999988754    579999999999999999999999


Q ss_pred             eCCe
Q psy11928        145 ENQT  148 (184)
Q Consensus       145 ~~g~  148 (184)
                      ++|+
T Consensus       175 ~~g~  178 (178)
T cd03229         175 RDGK  178 (178)
T ss_pred             eCCC
Confidence            9874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.95  E-value=9.8e-28  Score=204.61  Aligned_cols=148  Identities=23%  Similarity=0.246  Sum_probs=124.1

Q ss_pred             CcccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc------C-CC----HHHHHHH
Q psy11928          1 MYAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF------N-LP----YEKARKQ   57 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~------~-~~----~~~~~~~   57 (184)
                      ++|+|.++|++|+|.+++            ...|+.++|+.+  +.+..++.+++....      + .+    .+++.++
T Consensus        52 KiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~--L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~  129 (500)
T COG1129          52 KILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS--LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL  129 (500)
T ss_pred             HHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh--ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH
Confidence            479999999999999875            246999999985  556666666654211      1 11    2457788


Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI  134 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~  134 (184)
                      |+.+|+....+ .++++||.||||.|+||||++.+++++||||||++|+....+.+.+.++++   |.+||+|||.++++
T Consensus       130 l~~lg~~~~~~-~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei  208 (500)
T COG1129         130 LARLGLDIDPD-TLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEV  208 (500)
T ss_pred             HHHcCCCCChh-hhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence            99999864444 589999999999999999999999999999999999999999999888764   78999999999999


Q ss_pred             HhhcCeEEEEeCCeEEE
Q psy11928        135 RDTECTLWVIENQTIEE  151 (184)
Q Consensus       135 ~~~~~~i~~l~~g~i~~  151 (184)
                      .++|||+.+|.||+.+.
T Consensus       209 ~~i~DritVlRDG~~v~  225 (500)
T COG1129         209 FEIADRITVLRDGRVVG  225 (500)
T ss_pred             HHhcCEEEEEeCCEEee
Confidence            99999999999999764

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.95  E-value=1.2e-27  Score=211.32  Aligned_cols=153  Identities=22%  Similarity=0.321  Sum_probs=118.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhC--------
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTF--------   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~--------   61 (184)
                      .|+|+++|++|+|.+++           ++.++|++|++.  +. ..|+.+++... ...+.+++.+.++..        
T Consensus       380 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~  456 (585)
T TIGR01192       380 LLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAG--LF-NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILK  456 (585)
T ss_pred             HHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCc--cC-cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence            58899999999998764           346999999974  32 35677776543 123344444444333        


Q ss_pred             ---CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         62 ---GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        62 ---~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                         |++.... ....+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+.+.  +.|+|+|||+++.+..
T Consensus       457 l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~  535 (585)
T TIGR01192       457 RSNGYDTLVG-ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN  535 (585)
T ss_pred             ccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc
Confidence               3332222 356789999999999999999999999999999999999999999999765  6799999999999964


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                       ||+++++++|++++ .|+.+++.
T Consensus       536 -~d~i~~l~~G~i~~-~g~~~~l~  557 (585)
T TIGR01192       536 -ADLVLFLDQGRLIE-KGSFQELI  557 (585)
T ss_pred             -CCEEEEEECCEEEE-ECCHHHHH
Confidence             99999999999976 56655543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=6.9e-28  Score=186.34  Aligned_cols=156  Identities=21%  Similarity=0.304  Sum_probs=123.4

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh-c--C--CCHH-HHHHHHhhCC-
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-F--N--LPYE-KARKQLGTFG-   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~--~--~~~~-~~~~~l~~~~-   62 (184)
                      .|+|+.+|.+|+|.+++            +..|+||||...  +++..|+.+++... +  .  .... ..+++.+.|- 
T Consensus        48 ti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~--iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~  125 (237)
T COG0410          48 TIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR--IFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPR  125 (237)
T ss_pred             HHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc--chhhCcHHHHHhhhhhcccccccccccHHHHHHHChh
Confidence            47999999999999764            457999999763  45556666665421 1  1  0111 1556677764 


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhc
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~  138 (184)
                      +.+.. +++.++|||||||.++|||||+.+|++|+|||||.||-|.-.+++.+.|++.    +.||++|.++..++.+++
T Consensus       126 Lker~-~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~ia  204 (237)
T COG0410         126 LKERR-NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIA  204 (237)
T ss_pred             HHHHh-cCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhh
Confidence            44334 4589999999999999999999999999999999999999999999888754    459999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHHHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      ||.++|++|+++. .|+.++...
T Consensus       205 Dr~yvle~Griv~-~G~~~eL~~  226 (237)
T COG0410         205 DRGYVLENGRIVL-SGTAAELLA  226 (237)
T ss_pred             CEEEEEeCCEEEE-ecCHHHHhc
Confidence            9999999999974 777666543

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.95  E-value=8.9e-28  Score=210.63  Aligned_cols=152  Identities=29%  Similarity=0.359  Sum_probs=117.7

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHH---------hh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQL---------GT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l---------~~   60 (184)
                      .|+|+++|++|+|.+++           ++.++|+||++.  +. ..++.+++.... ..+.+++.+.+         +.
T Consensus       363 ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~  439 (544)
T TIGR01842       363 LIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE--LF-PGTVAENIARFGENADPEKIIEAAKLAGVHELILR  439 (544)
T ss_pred             HHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcc--cc-cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh
Confidence            57899999999998764           357999999974  33 246777765322 23344444333         33


Q ss_pred             C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928         61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR  135 (184)
Q Consensus        61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~  135 (184)
                      +  |++.... ....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+.   ++|+|++||+++.+.
T Consensus       440 l~~gl~t~~~-~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~  518 (544)
T TIGR01842       440 LPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG  518 (544)
T ss_pred             CccccccccC-CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH
Confidence            3  3443333 357889999999999999999999999999999999999999999999764   579999999999775


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                       .||+++++++|++++ .|+.+++
T Consensus       519 -~~d~i~~l~~G~i~~-~g~~~~l  540 (544)
T TIGR01842       519 -CVDKILVLQDGRIAR-FGERDEV  540 (544)
T ss_pred             -hCCEEEEEECCEEEe-eCCHHHH
Confidence             699999999999976 5665544

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.95  E-value=1.7e-27  Score=183.50  Aligned_cols=125  Identities=25%  Similarity=0.248  Sum_probs=102.8

Q ss_pred             cccCcc--cCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccccc
Q psy11928          2 YAHCDL--QPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK   71 (184)
Q Consensus         2 ~~~G~~--~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~   71 (184)
                      +|+|+.  +|++|+|.+++        +..++|+||++.  +....++.+++....            .           
T Consensus        54 ~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~i~~~~------------~-----------  108 (194)
T cd03213          54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDI--LHPTLTVRETLMFAA------------K-----------  108 (194)
T ss_pred             HHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCccc--CCCCCcHHHHHHHHH------------H-----------
Confidence            589999  99999998753        356999999863  334456655442110            0           


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH-HHHhhcCeEEEEeCC
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER-LIRDTECTLWVIENQ  147 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~-~~~~~~~~i~~l~~g  147 (184)
                      ..+|||||+||++||||++.+|+++||||||++||+.+++.+.+.|.+.   +.|+|++|||++ ++..+||+++++++|
T Consensus       109 ~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G  188 (194)
T cd03213         109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG  188 (194)
T ss_pred             hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence            0189999999999999999999999999999999999999999998764   579999999996 788899999999999


Q ss_pred             eEEE
Q psy11928        148 TIEE  151 (184)
Q Consensus       148 ~i~~  151 (184)
                      ++..
T Consensus       189 ~i~~  192 (194)
T cd03213         189 RVIY  192 (194)
T ss_pred             EEEe
Confidence            9864

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.95  E-value=1e-27  Score=211.20  Aligned_cols=154  Identities=18%  Similarity=0.263  Sum_probs=120.2

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCcccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAH-   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~-   68 (184)
                      .|+|+++|++|+|.+++           +..++|++|++.  +. ..|+.+++... ...+.+++.+.++..++.+... 
T Consensus       360 ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~  436 (569)
T PRK10789        360 LIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF--LF-SDTVANNIALGRPDATQQEIEHVARLASVHDDILR  436 (569)
T ss_pred             HHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe--ec-cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence            57899999999998764           356999999974  33 24677776543 2234556666666655532211 


Q ss_pred             ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                               .....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+.  +.|+|+|||+++.+. .
T Consensus       437 lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~  515 (569)
T PRK10789        437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-E  515 (569)
T ss_pred             CcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-c
Confidence                     1245789999999999999999999999999999999999999999999764  689999999999886 4


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||++++|++|++++ .|+.++..
T Consensus       516 ~d~i~~l~~G~i~~-~g~~~~l~  537 (569)
T PRK10789        516 ASEILVMQHGHIAQ-RGNHDQLA  537 (569)
T ss_pred             CCEEEEEeCCEEEE-ecCHHHHH
Confidence            89999999999976 56655443

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.95  E-value=6.6e-28  Score=186.16  Aligned_cols=136  Identities=29%  Similarity=0.361  Sum_probs=107.6

Q ss_pred             cccCcccCCceeEEecCC----------eEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNHR----------LRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      +|+|+++|++|+|.+++.          ..++|++|++.  +....++.+++...   ......++.++++.+++.+..+
T Consensus        45 ~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~  122 (198)
T TIGR01189        45 ILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPG--LKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED  122 (198)
T ss_pred             HHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcc--cccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc
Confidence            589999999999987542          46899999753  33345665554321   1222345778899999986554


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEE
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~  142 (184)
                       +++.+||||||||++||||++.+|++++|||||++||+.++..+.+.+.++   +.|||++||+...+.  |++++
T Consensus       123 -~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~--~~~~~  196 (198)
T TIGR01189       123 -LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV--EAREL  196 (198)
T ss_pred             -CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc--ceEEe
Confidence             589999999999999999999999999999999999999999999999764   679999999986653  55554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>KOG0062|consensus

Probab=99.95  E-value=7.9e-28  Score=202.99  Aligned_cols=166  Identities=40%  Similarity=0.690  Sum_probs=142.4

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHH-hcCCCHHHHHHHHhhCCCCcccccccccCCChhHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQR-LFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK   80 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k   80 (184)
                      ++.|...|..|.+....+.+|+|.+|.--.++....+..++... ..+..++++++-+..||++......++.+||||||
T Consensus       409 i~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQK  488 (582)
T KOG0062|consen  409 ILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQK  488 (582)
T ss_pred             HHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcch
Confidence            46788899999999999999999999754444333344444433 34557788999999999987766667899999999


Q ss_pred             HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928         81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus        81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      -||++|.....+|.+|+||||||+||.++...|-+.|+.+.+.||+||||.+|+...|+.+|+.++|++..+.|..++|.
T Consensus       489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yK  568 (582)
T KOG0062|consen  489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYK  568 (582)
T ss_pred             hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888888887


Q ss_pred             HHHHHHh
Q psy11928        161 KELLEAL  167 (184)
Q Consensus       161 ~~~~~~~  167 (184)
                      +....++
T Consensus       569 kl~~~e~  575 (582)
T KOG0062|consen  569 KLLGAEL  575 (582)
T ss_pred             HHHHHHH
Confidence            7655544

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.95  E-value=2e-27  Score=183.88  Aligned_cols=123  Identities=28%  Similarity=0.378  Sum_probs=100.2

Q ss_pred             cccCc--ccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccc
Q psy11928          2 YAHCD--LQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHA   67 (184)
Q Consensus         2 ~~~G~--~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~   67 (184)
                      +|+|+  .+|++|+|.+++            +..++|+||++.  +....++.+++                        
T Consensus        45 ~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~~~~~~l------------------------   98 (200)
T cd03217          45 TIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP--EIPGVKNADFL------------------------   98 (200)
T ss_pred             HHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh--hccCccHHHHH------------------------
Confidence            57898  479999998653            124999999863  22223322211                        


Q ss_pred             ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh-hcCeEEE
Q psy11928         68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD-TECTLWV  143 (184)
Q Consensus        68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~-~~~~i~~  143 (184)
                       .+...+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+.   +.|||++||+++.+.. .||++++
T Consensus        99 -~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~  177 (200)
T cd03217          99 -RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHV  177 (200)
T ss_pred             -hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEE
Confidence             1234689999999999999999999999999999999999999999998764   6799999999999988 7999999


Q ss_pred             EeCCeEEE
Q psy11928        144 IENQTIEE  151 (184)
Q Consensus       144 l~~g~i~~  151 (184)
                      |++|++.+
T Consensus       178 l~~G~i~~  185 (200)
T cd03217         178 LYDGRIVK  185 (200)
T ss_pred             EECCEEEE
Confidence            99999975

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.95  E-value=1.3e-27  Score=179.45  Aligned_cols=76  Identities=25%  Similarity=0.338  Sum_probs=72.5

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q psy11928         75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIE  150 (184)
Q Consensus        75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~  150 (184)
                      |||||+||++||||++.+|+++||||||++||+.+++.+.+.++++   +.|+|++|||++++...||+++++++|+++
T Consensus        83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~  161 (163)
T cd03216          83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV  161 (163)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999764   679999999999999999999999999885

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.95  E-value=1.1e-27  Score=215.39  Aligned_cols=153  Identities=25%  Similarity=0.347  Sum_probs=121.4

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCc----
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAG----   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----   65 (184)
                      .|+|+++|++|+|.+++           +..+||++|++.  +. ..|+.+++... ...+.+++.+.++..++.+    
T Consensus       502 ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~--lf-~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~  578 (694)
T TIGR01846       502 LLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV--LF-SRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISE  578 (694)
T ss_pred             HHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe--eh-hhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHh
Confidence            58899999999998764           356999999974  22 35677777542 2334555555555555432    


Q ss_pred             -------ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         66 -------HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        66 -------~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                             ... ....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+.  +.|+|++||+++.+..
T Consensus       579 lp~gl~t~i~-~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~  657 (694)
T TIGR01846       579 LPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA  657 (694)
T ss_pred             CcCccCcEec-CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh
Confidence                   222 245789999999999999999999999999999999999999999999875  5799999999999875


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                       ||++++|++|++++ .|+.++..
T Consensus       658 -~d~ii~l~~G~i~~-~g~~~~l~  679 (694)
T TIGR01846       658 -CDRIIVLEKGQIAE-SGRHEELL  679 (694)
T ss_pred             -CCEEEEEeCCEEEE-eCCHHHHH
Confidence             99999999999986 56665543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=2.7e-27  Score=199.23  Aligned_cols=147  Identities=24%  Similarity=0.320  Sum_probs=122.8

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc------CCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF------NLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~------~~~----~~~~~~~l~   59 (184)
                      +|.|+++|++|+|.+++            +..||+|+|++.  +.+..|+.+++....      ...    .+++.++.+
T Consensus        49 iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~--Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~  126 (501)
T COG3845          49 ILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFM--LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSE  126 (501)
T ss_pred             HHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccc--cccccchhhhhhhcCccccccccCHHHHHHHHHHHHH
Confidence            68999999999999875            346999999985  333344444433211      111    356778899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      ++|++-+.+ .++.+||-|+||||.|.++|..+|++|||||||+-|-|...+.|++.++++   |+|||+|||-+.++.+
T Consensus       127 ~yGl~vdp~-~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~  205 (501)
T COG3845         127 RYGLPVDPD-AKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA  205 (501)
T ss_pred             HhCCCCCcc-ceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence            999987665 489999999999999999999999999999999999999999999988754   7899999999999999


Q ss_pred             hcCeEEEEeCCeEEE
Q psy11928        137 TECTLWVIENQTIEE  151 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~  151 (184)
                      +|||+-+|..|+++.
T Consensus       206 iaDrvTVLR~Gkvvg  220 (501)
T COG3845         206 IADRVTVLRRGKVVG  220 (501)
T ss_pred             hhCeeEEEeCCeEEe
Confidence            999999999999754

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.95  E-value=4.5e-27  Score=183.65  Aligned_cols=153  Identities=17%  Similarity=0.134  Sum_probs=112.4

Q ss_pred             cccCcccCCceeEE-ecCCeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCHHHH-HHHHhhCCCCcccccccccCCC
Q psy11928          2 YAHCDLQPQQGELK-KNHRLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPYEKA-RKQLGTFGLAGHAHTIKMKDLS   76 (184)
Q Consensus         2 ~~~G~~~p~~G~i~-~~~~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LS   76 (184)
                      +|+|+.+|++|+|. ++... + .+.+.+  .+.+..++.+++.   ..++....+. ..+.+.++++...+ +++++||
T Consensus        32 ~i~Gl~~~~sG~i~~~~~~~-~-~~~~~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~lS  106 (213)
T PRK15177         32 LLCGLDAPDEGDFIGLRGDA-L-PLGANS--FILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYT-DRVSEYS  106 (213)
T ss_pred             HHhCCccCCCCCEEEecCce-e-cccccc--ccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhh-chHhhcC
Confidence            58999999999996 44321 1 122222  2333445555443   2223333333 23345667765554 5899999


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh-c-CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecC
Q psy11928         77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE-Y-KGGVIIVSHDERLIRDTECTLWVIENQTIEEIDG  154 (184)
Q Consensus        77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~-~-~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~  154 (184)
                      +|||||++||||++.+|+++||||||+++|+.++..+.+.+.+ . +.|+|++||+++++..+||++++|++|++.. .+
T Consensus       107 ~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~  185 (213)
T PRK15177        107 VTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM-CE  185 (213)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE-eC
Confidence            9999999999999999999999999999999999999987753 2 5689999999999999999999999999974 56


Q ss_pred             ChhHHH
Q psy11928        155 DFDDYR  160 (184)
Q Consensus       155 ~~~~~~  160 (184)
                      +.+...
T Consensus       186 ~~~~~~  191 (213)
T PRK15177        186 DLAQAT  191 (213)
T ss_pred             CHHHHH
Confidence            655443

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=2.2e-27  Score=183.53  Aligned_cols=135  Identities=24%  Similarity=0.241  Sum_probs=108.2

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      +|+|+.+|++|+|.+++          +..++|++|++.  +.+..++.+++...  .......+.++++.+++....+ 
T Consensus        46 ~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-  122 (200)
T PRK13540         46 LIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSG--INPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-  122 (200)
T ss_pred             HHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccc--cCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-
Confidence            58999999999998764          246999999864  33445565554321  1112346778899999975544 


Q ss_pred             ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      +++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|++.   +.|||++||+.+++.. ||.
T Consensus       123 ~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~  195 (200)
T PRK13540        123 YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADY  195 (200)
T ss_pred             CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cch
Confidence            588999999999999999999999999999999999999999999999764   6799999999999976 554

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.95  E-value=2.3e-27  Score=179.32  Aligned_cols=112  Identities=31%  Similarity=0.428  Sum_probs=94.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+.+|++|+|.+++           +..++|+||++.  +.. .++.+++                           
T Consensus        47 ~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~--~~~-~t~~e~l---------------------------   96 (171)
T cd03228          47 LLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPF--LFS-GTIRENI---------------------------   96 (171)
T ss_pred             HHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCch--hcc-chHHHHh---------------------------
Confidence            58999999999998754           235889998763  222 2433222                           


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                          ||+|||||++||||++.+|+++||||||++||+.++..+.+.+.+.  +.|||++|||++++.. ||+++++++|+
T Consensus        97 ----LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228          97 ----LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             ----hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence                9999999999999999999999999999999999999999999765  4699999999999987 99999998874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.95  E-value=3e-27  Score=208.31  Aligned_cols=153  Identities=21%  Similarity=0.252  Sum_probs=119.9

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH-   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-   68 (184)
                      .|+|+++|++|+|.+++           ++.+||+||++.  + ...|+.+++.... ..+.+++.+.++.+|+.+... 
T Consensus       385 lL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~  461 (576)
T TIGR02204       385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV--L-FAASVMENIRYGRPDATDEEVEAAARAAHAHEFISA  461 (576)
T ss_pred             HHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHh
Confidence            57899999999998764           346999999984  2 3456777765422 234566666666665532111 


Q ss_pred             ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                               ......||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+.  ++|+|+|||+.+.+. .
T Consensus       462 l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~  540 (576)
T TIGR02204       462 LPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-K  540 (576)
T ss_pred             CCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-h
Confidence                     1235679999999999999999999999999999999999999999988775  589999999998886 5


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||+++++++|++++ .|+.++.
T Consensus       541 ~d~vi~l~~g~~~~-~g~~~~l  561 (576)
T TIGR02204       541 ADRIVVMDQGRIVA-QGTHAEL  561 (576)
T ss_pred             CCEEEEEECCEEEe-eecHHHH
Confidence            89999999999976 5565544

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.95  E-value=4.3e-27  Score=180.96  Aligned_cols=125  Identities=19%  Similarity=0.197  Sum_probs=101.6

Q ss_pred             cccCcc--cCCceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccc
Q psy11928          2 YAHCDL--QPQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKM   72 (184)
Q Consensus         2 ~~~G~~--~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~   72 (184)
                      +|+|+.  +|++|+|.+++       +..++|++|++.  +....++.+++....         .+              
T Consensus        52 ~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~---------~~--------------  106 (192)
T cd03232          52 VLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDV--HSPNLTVREALRFSA---------LL--------------  106 (192)
T ss_pred             HHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCc--cccCCcHHHHHHHHH---------HH--------------
Confidence            578875  48999998764       346999999863  334456665543210         00              


Q ss_pred             cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH-HHHhhcCeEEEEeC-C
Q psy11928         73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER-LIRDTECTLWVIEN-Q  147 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~-~~~~~~~~i~~l~~-g  147 (184)
                      .+|||||+||++||||++.+|+++||||||++||+.++..+.+.+.+.   +.|||++||+++ .+...||++++|++ |
T Consensus       107 ~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g  186 (192)
T cd03232         107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGG  186 (192)
T ss_pred             hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence            089999999999999999999999999999999999999999998764   679999999998 47788999999998 9


Q ss_pred             eEEE
Q psy11928        148 TIEE  151 (184)
Q Consensus       148 ~i~~  151 (184)
                      +++.
T Consensus       187 ~i~~  190 (192)
T cd03232         187 KTVY  190 (192)
T ss_pred             eEEe
Confidence            8864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.95  E-value=5.3e-27  Score=206.59  Aligned_cols=154  Identities=27%  Similarity=0.334  Sum_probs=121.1

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCC-------
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFG-------   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-------   62 (184)
                      .|.|+++|++|+|.+++           +.+||+|||++.  +. ..|+.+++.... ..+++++.+.++..+       
T Consensus       374 LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~--LF-~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~  450 (567)
T COG1132         374 LLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL--LF-SGTIRENIALGRPDATDEEIEEALKLANAHEFIAN  450 (567)
T ss_pred             HHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccce--ee-cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh
Confidence            47899999999999854           567999999984  33 367777775432 234555555554443       


Q ss_pred             ----CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         63 ----LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        63 ----l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                          ++.... .....||||||||++||||++.+|++++||||||+||+.+...+.+.+.+.  ++|+|+|+|.+..+..
T Consensus       451 lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~  529 (567)
T COG1132         451 LPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN  529 (567)
T ss_pred             Ccccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh
Confidence                332222 235689999999999999999999999999999999999999999998643  5699999999999987


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                       ||+|+++++|++++ .|+.++..+
T Consensus       530 -aD~IiVl~~G~i~e-~G~h~eLl~  552 (567)
T COG1132         530 -ADRIIVLDNGRIVE-RGTHEELLA  552 (567)
T ss_pred             -CCEEEEEECCEEEE-ecCHHHHHH
Confidence             99999999999876 666666544

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.95  E-value=4.6e-27  Score=210.02  Aligned_cols=140  Identities=22%  Similarity=0.212  Sum_probs=116.6

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh--------cCCCHHHHHHHHhhCCCCccccccc--
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL--------FNLPYEKARKQLGTFGLAGHAHTIK--   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~~~~~~~~--   71 (184)
                      +|+|+.+|++|+|..+.+..++|+||++.  +... |+.+++...        .....+++.++++.+++.+.... +  
T Consensus       497 lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g  572 (659)
T TIGR00954       497 ILGELWPVYGGRLTKPAKGKLFYVPQRPY--MTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGG  572 (659)
T ss_pred             HHhCCCCCCCCeEeecCCCcEEEECCCCC--CCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCC
Confidence            58999999999999887788999999974  3333 676665431        11235667788999998754432 3  


Q ss_pred             -------ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         72 -------MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        72 -------~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                             ..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+++.+.|+|+|||+++.+. .||+++++
T Consensus       573 ~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~-~~d~il~l  651 (659)
T TIGR00954       573 WSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK-YHEYLLYM  651 (659)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH-hCCEEEEE
Confidence                   3799999999999999999999999999999999999999999999988899999999999874 69999998


Q ss_pred             eC
Q psy11928        145 EN  146 (184)
Q Consensus       145 ~~  146 (184)
                      +.
T Consensus       652 ~~  653 (659)
T TIGR00954       652 DG  653 (659)
T ss_pred             eC
Confidence            63

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.95  E-value=1.1e-26  Score=180.01  Aligned_cols=131  Identities=18%  Similarity=0.148  Sum_probs=103.5

Q ss_pred             cccCccc---CCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQ---PQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~---p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      +|+|+++   |++|+|.+++          +..++|++|++.  +....|+.+++.....     .       .    . 
T Consensus        52 ~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~-----~-------~----~-  112 (202)
T cd03233          52 ALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDV--HFPTLTVRETLDFALR-----C-------K----G-  112 (202)
T ss_pred             HhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccc--cCCCCcHHHHHhhhhh-----h-------c----c-
Confidence            5889998   8999997643          346999999863  3445566666532110     0       0    2 


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEE-ecCHHHHHhhcCeEEE
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIV-SHDERLIRDTECTLWV  143 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiiv-sHd~~~~~~~~~~i~~  143 (184)
                      ++++.+||+||+||++||||++.+|+++||||||++||+.+++.+.+.+++.    +.|+|++ +|+.+.+...||++++
T Consensus       113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~  192 (202)
T cd03233         113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV  192 (202)
T ss_pred             ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence            2478999999999999999999999999999999999999999999998764    3565555 5667899889999999


Q ss_pred             EeCCeEEE
Q psy11928        144 IENQTIEE  151 (184)
Q Consensus       144 l~~g~i~~  151 (184)
                      |++|+++.
T Consensus       193 l~~G~i~~  200 (202)
T cd03233         193 LYEGRQIY  200 (202)
T ss_pred             EECCEEEe
Confidence            99999864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055|consensus

Probab=99.95  E-value=2.1e-27  Score=217.24  Aligned_cols=153  Identities=27%  Similarity=0.335  Sum_probs=118.1

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCC-------
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFG-------   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-------   62 (184)
                      .|.+++.|++|+|.+++           +.+||.|+|+|.  + ...|+.+++.... +.+.+++.+..+..+       
T Consensus       398 LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePv--l-F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~  474 (1228)
T KOG0055|consen  398 LLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV--L-FATTIRENIRYGKPDATREEIEEAAKAANAHDFILK  474 (1228)
T ss_pred             HHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechh--h-hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh
Confidence            36789999999999875           567999999983  2 3456777765422 223444444333322       


Q ss_pred             ----CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         63 ----LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        63 ----l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                          ++..... +--+||||||||++|||||+.+|+|||||||||+||+++.+.+.+.|.+.  |.|.|+|+|++..+..
T Consensus       475 lp~g~~T~vge-~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn  553 (1228)
T KOG0055|consen  475 LPDGYDTLVGE-RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN  553 (1228)
T ss_pred             hHHhhcccccC-CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc
Confidence                2222222 34569999999999999999999999999999999999999999999765  7899999999999987


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                       +|+|+++++|+|++ .|+.+++.
T Consensus       554 -aD~I~v~~~G~IvE-~G~h~ELi  575 (1228)
T KOG0055|consen  554 -ADKIAVMEEGKIVE-QGTHDELI  575 (1228)
T ss_pred             -cCEEEEEECCEEEE-ecCHHHHH
Confidence             89999999999987 56655543

>PLN03211 ABC transporter G-25; Provisional

Probab=99.95  E-value=8.6e-27  Score=207.90  Aligned_cols=155  Identities=23%  Similarity=0.244  Sum_probs=120.5

Q ss_pred             cccCcccCC--ceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHH---h--c-CCCH----HHHHHHHhhCC
Q psy11928          2 YAHCDLQPQ--QGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQR---L--F-NLPY----EKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~--~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~--~-~~~~----~~~~~~l~~~~   62 (184)
                      +|+|..+|+  +|+|.+++       ++++||++|++.  +.+..|+.+++..   .  . ....    +++.++++.+|
T Consensus       113 iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg  190 (659)
T PLN03211        113 ALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDI--LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG  190 (659)
T ss_pred             HHhCCCCCCceeEEEEECCEECchhhccceEEECcccc--cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence            689999885  89998765       246999999864  3334455544321   1  1 1122    34677899999


Q ss_pred             CCcccc----cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH-HH
Q psy11928         63 LAGHAH----TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER-LI  134 (184)
Q Consensus        63 l~~~~~----~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~-~~  134 (184)
                      +.+..+    ++.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++.   +.|||++||+++ .+
T Consensus       191 L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i  270 (659)
T PLN03211        191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV  270 (659)
T ss_pred             ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence            975432    2357889999999999999999999999999999999999999999998753   689999999998 58


Q ss_pred             HhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        135 RDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       135 ~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+.+|++++|++|+++. .|+.++.
T Consensus       271 ~~~~D~iilL~~G~iv~-~G~~~~~  294 (659)
T PLN03211        271 YQMFDSVLVLSEGRCLF-FGKGSDA  294 (659)
T ss_pred             HHhhceEEEecCCcEEE-ECCHHHH
Confidence            88999999999999864 5555443

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.94  E-value=6.9e-27  Score=187.21  Aligned_cols=142  Identities=21%  Similarity=0.235  Sum_probs=109.0

Q ss_pred             cccCcccCCceeEE-----------ecC-------------CeEEEEEecCCCCC-CCccCCHHHHHHHhcCCCHHHHHH
Q psy11928          2 YAHCDLQPQQGELK-----------KNH-------------RLRIGRFDQHSGEH-LTAEETPAEYLQRLFNLPYEKARK   56 (184)
Q Consensus         2 ~~~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~   56 (184)
                      +|+|+++|++|+|.           +++             ...++|++|.+... .+...++.+++..  ......+.+
T Consensus        45 ~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~  122 (255)
T cd03236          45 ILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK--KDERGKLDE  122 (255)
T ss_pred             HHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhch--hHHHHHHHH
Confidence            68999999999995           221             11368888875310 1112222222111  111345778


Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL  133 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~  133 (184)
                      +++.+|++...+ +++.+||||||||++|||+++.+|+++||||||++||+.++..+.+.+.+.   +.|||++|||+++
T Consensus       123 ~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~  201 (255)
T cd03236         123 LVDQLELRHVLD-RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV  201 (255)
T ss_pred             HHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            999999986554 589999999999999999999999999999999999999999988888754   6799999999999


Q ss_pred             HHhhcCeEEEEeC
Q psy11928        134 IRDTECTLWVIEN  146 (184)
Q Consensus       134 ~~~~~~~i~~l~~  146 (184)
                      +..+||+++++++
T Consensus       202 ~~~~ad~i~~l~~  214 (255)
T cd03236         202 LDYLSDYIHCLYG  214 (255)
T ss_pred             HHHhCCEEEEECC
Confidence            9999999999964

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.94  E-value=7.5e-27  Score=223.35  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=123.2

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT-   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-   69 (184)
                      .|.|+++|++|+|.+++           |++++++||+|.  +. ..|+.+++......+.+++.+.++..++.+.... 
T Consensus      1281 lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~--LF-~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232       1281 ALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPV--LF-SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred             HHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCe--ee-CccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence            47899999999998764           567999999984  32 3467777643223456677777776666432211 


Q ss_pred             ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928         70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~  138 (184)
                               ....+||||||||++|||||+.+|+|||||||||+||+++.+.+.+.|++.  +.|+|+|+|+++.+.. |
T Consensus      1358 p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~ 1436 (1495)
T PLN03232       1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-C 1436 (1495)
T ss_pred             cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-C
Confidence                     134689999999999999999999999999999999999999999999865  5799999999999986 8


Q ss_pred             CeEEEEeCCeEEEecCChhHHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |+|++|++|++++ .|++++..
T Consensus      1437 DrIlVL~~G~ivE-~Gt~~eLl 1457 (1495)
T PLN03232       1437 DKILVLSSGQVLE-YDSPQELL 1457 (1495)
T ss_pred             CEEEEEECCEEEE-ECCHHHHH
Confidence            9999999999987 46665544

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.94  E-value=1.4e-26  Score=203.15  Aligned_cols=147  Identities=20%  Similarity=0.166  Sum_probs=113.7

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT-   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-   69 (184)
                      .|+|+++|++|+|.+++           +..++|++|++.  +. ..++.++   ....+.+.+.+.++.+++...... 
T Consensus       368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~~  441 (547)
T PRK10522        368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH--LF-DQLLGPE---GKPANPALVEKWLERLKMAHKLELE  441 (547)
T ss_pred             HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChh--HH-HHhhccc---cCchHHHHHHHHHHHcCCchhhhcc
Confidence            58999999999998763           357999999874  21 1122221   012234567778888888654321 


Q ss_pred             -c--cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEE
Q psy11928         70 -I--KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        70 -~--~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~  142 (184)
                       .  ...+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+    .+.|+|+|||+++.+. .||+++
T Consensus       442 ~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~  520 (547)
T PRK10522        442 DGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLL  520 (547)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEE
Confidence             0  1358999999999999999999999999999999999999998887752    3689999999998765 699999


Q ss_pred             EEeCCeEEEecCC
Q psy11928        143 VIENQTIEEIDGD  155 (184)
Q Consensus       143 ~l~~g~i~~~~~~  155 (184)
                      ++++|++.+..+.
T Consensus       521 ~l~~G~i~e~~~~  533 (547)
T PRK10522        521 EMRNGQLSELTGE  533 (547)
T ss_pred             EEECCEEEEecCC
Confidence            9999999876554

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=1e-26  Score=179.16  Aligned_cols=135  Identities=27%  Similarity=0.219  Sum_probs=107.1

Q ss_pred             cccCcccCCceeEEecCC-------eEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccccccc
Q psy11928          2 YAHCDLQPQQGELKKNHR-------LRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAHTIKM   72 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~-------~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~   72 (184)
                      +|+|+.+|++|+|.+++.       ..++|++|++.  +....++.+++....  ....+++.++++.+++.+..+ +++
T Consensus        45 ~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~  121 (195)
T PRK13541         45 MIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG--LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-EKC  121 (195)
T ss_pred             HHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC--CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-cCh
Confidence            589999999999987652       34899998763  334456655543211  112345677889999976554 589


Q ss_pred             cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHHHHHhhcCe
Q psy11928         73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~~~  140 (184)
                      .+||||||||++||||++.+|+++||||||++||+.++..+.+.+.+   .+.|+|++||+.+++.. +|.
T Consensus       122 ~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~  191 (195)
T PRK13541        122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQI  191 (195)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhe
Confidence            99999999999999999999999999999999999999999998863   36899999999998876 443

>KOG0927|consensus

Probab=99.94  E-value=3.6e-27  Score=200.00  Aligned_cols=165  Identities=42%  Similarity=0.735  Sum_probs=142.6

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcC--CCHHHHHHHHhhCCCCcccccccccCCChhH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN--LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQ   79 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~   79 (184)
                      .++|.+.|..|.|.......+++..|+....+.-..+..+++...+.  ...+.++.++.+|||+.+....++++||+||
T Consensus       435 l~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gq  514 (614)
T KOG0927|consen  435 LITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQ  514 (614)
T ss_pred             HHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhccccc
Confidence            57899999999998776667888888765444445566677655443  3456788999999999777778999999999


Q ss_pred             HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928         80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus        80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |.||.+|++.+.+|.+|+|||||||||+.+...+.+.|+++.++||+||||..++.++++++|+.++|.+..+.|++..|
T Consensus       515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y  594 (614)
T KOG0927|consen  515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY  594 (614)
T ss_pred             chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999899999888


Q ss_pred             HHHHHHH
Q psy11928        160 RKELLEA  166 (184)
Q Consensus       160 ~~~~~~~  166 (184)
                      .+...+.
T Consensus       595 k~~l~~~  601 (614)
T KOG0927|consen  595 KEHLKKK  601 (614)
T ss_pred             HHHHHHH
Confidence            7765433

>PLN03130 ABC transporter C family member; Provisional

Probab=99.94  E-value=1.1e-26  Score=223.06  Aligned_cols=154  Identities=18%  Similarity=0.175  Sum_probs=122.7

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT-   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-   69 (184)
                      .|.|+++|++|+|.+++           |++||++||+|.  +. .-|+.+++......+++++.+.++..++.+.... 
T Consensus      1284 lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~--LF-~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~l 1360 (1622)
T PLN03130       1284 ALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPV--LF-SGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRN 1360 (1622)
T ss_pred             HHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCc--cc-cccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence            47899999999999875           567999999984  32 2367777643223456667777776665432211 


Q ss_pred             ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928         70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~  138 (184)
                               ....+||||||||++|||||+.+|+|||||||||+||..+.+.+.+.|++.  ++|+|+|+|+++.+.. |
T Consensus      1361 p~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~ 1439 (1622)
T PLN03130       1361 SLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-C 1439 (1622)
T ss_pred             ccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-C
Confidence                     134689999999999999999999999999999999999999999999865  5799999999999986 8


Q ss_pred             CeEEEEeCCeEEEecCChhHHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |+|++|++|++++ .|++++..
T Consensus      1440 DrIlVLd~G~IvE-~Gt~~eLl 1460 (1622)
T PLN03130       1440 DRILVLDAGRVVE-FDTPENLL 1460 (1622)
T ss_pred             CEEEEEECCEEEE-eCCHHHHH
Confidence            9999999999987 45555543

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.94  E-value=2.9e-26  Score=204.63  Aligned_cols=147  Identities=27%  Similarity=0.355  Sum_probs=119.6

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++               ++.++|+||++.  +....++.+++..   ..+..    .+++.++++
T Consensus        53 ~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~  130 (648)
T PRK10535         53 ILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH--LLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQ  130 (648)
T ss_pred             HHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            58999999999998753               236999999874  3344455554432   11222    235677899


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+|+.+..+ +++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.++++++   +.|+|++||+.+.+. 
T Consensus       131 ~lgl~~~~~-~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-  208 (648)
T PRK10535        131 RLGLEDRVE-YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-  208 (648)
T ss_pred             HCCChhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-
Confidence            999986554 589999999999999999999999999999999999999999999998754   579999999999886 


Q ss_pred             hcCeEEEEeCCeEEEe
Q psy11928        137 TECTLWVIENQTIEEI  152 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~  152 (184)
                      .||++++|++|++.+.
T Consensus       209 ~~d~i~~l~~G~i~~~  224 (648)
T PRK10535        209 QAERVIEIRDGEIVRN  224 (648)
T ss_pred             hCCEEEEEECCEEEee
Confidence            5999999999999753

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.94  E-value=3.7e-26  Score=173.63  Aligned_cols=103  Identities=27%  Similarity=0.284  Sum_probs=91.8

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHH
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKA   81 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq   81 (184)
                      +|+|+++|++|+|.+++ ..++|++|++.                                            |||||||
T Consensus        44 ~l~Gl~~p~~G~i~~~g-~~i~~~~q~~~--------------------------------------------LSgGq~q   78 (177)
T cd03222          44 ILAGQLIPNGDNDEWDG-ITPVYKPQYID--------------------------------------------LSGGELQ   78 (177)
T ss_pred             HHHcCCCCCCcEEEECC-EEEEEEcccCC--------------------------------------------CCHHHHH
Confidence            58899999999998865 35888887541                                            9999999


Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTI  149 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i  149 (184)
                      |++||||++.+|+++||||||++||+.++..+.+.+.+.    +.|||+||||++++..+|+++++++++..
T Consensus        79 rv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~  150 (177)
T cd03222          79 RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG  150 (177)
T ss_pred             HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence            999999999999999999999999999999999988654    37999999999999999999999987754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=2.8e-27  Score=175.15  Aligned_cols=149  Identities=22%  Similarity=0.261  Sum_probs=121.4

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCC-CCCCccCCHHH-HHHHhcCCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSG-EHLTAEETPAE-YLQRLFNLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      .+|.++.|++|++.+.+           |..|+|+-|.|. -.-+++.|+.. +.......++..+..+++++++.+...
T Consensus        48 ~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L  127 (223)
T COG4619          48 IVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL  127 (223)
T ss_pred             HHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhh
Confidence            46789999999998754           567999999985 11133344221 111223445677889999999987666


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      .+++.+||||||||++|+|.|..-|+|||||||||+||+.+++.+.++|.++    ..+++.||||.+...+.++++|-+
T Consensus       128 ~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl  207 (223)
T COG4619         128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITL  207 (223)
T ss_pred             cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEe
Confidence            7799999999999999999999999999999999999999999999988654    579999999999988999999999


Q ss_pred             eCCeEE
Q psy11928        145 ENQTIE  150 (184)
Q Consensus       145 ~~g~i~  150 (184)
                      ..|++-
T Consensus       208 ~~G~~~  213 (223)
T COG4619         208 QPGHAG  213 (223)
T ss_pred             ccCccc
Confidence            998763

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=8e-27  Score=198.03  Aligned_cols=154  Identities=26%  Similarity=0.305  Sum_probs=124.1

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .++|..+|++|+|..++           +..+++++|.+.  + ...|+.+++... .+.+.+++.++++.+|+++....
T Consensus       383 Ll~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~h--l-F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~  459 (573)
T COG4987         383 LLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVH--L-FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES  459 (573)
T ss_pred             HHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchH--H-HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence            36788999999998764           346899999864  3 234566665532 34457788888989888754332


Q ss_pred             c----------cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         70 I----------KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        70 ~----------~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                      .          --..|||||+||++|||+|+++.+++||||||.|||+.+..++++.+.+.  ++|+|+|||++..++. 
T Consensus       460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-  538 (573)
T COG4987         460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-  538 (573)
T ss_pred             ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-
Confidence            1          24689999999999999999999999999999999999999999999765  7899999999999985 


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||+|++|++|++++ .|++.+..
T Consensus       539 ~drIivl~~Gkiie-~G~~~~Ll  560 (573)
T COG4987         539 MDRIIVLDNGKIIE-EGTHAELL  560 (573)
T ss_pred             cCEEEEEECCeeee-cCCHHhhh
Confidence            89999999999986 66665543

>PRK13409 putative ATPase RIL; Provisional

Probab=99.94  E-value=2.1e-26  Score=203.19  Aligned_cols=142  Identities=23%  Similarity=0.302  Sum_probs=113.5

Q ss_pred             cccCcccCCceeEE-----------ecC-------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHH
Q psy11928          2 YAHCDLQPQQGELK-----------KNH-------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~   55 (184)
                      +|+|+++|++|+|.           +++             ...+++.+|...  +.+ ...++.+++...  ...+++.
T Consensus       118 iL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~-~~~tv~e~l~~~--~~~~~~~  194 (590)
T PRK13409        118 ILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKV-FKGKVRELLKKV--DERGKLD  194 (590)
T ss_pred             HHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhh-hcchHHHHHHhh--hHHHHHH
Confidence            68999999999996           322             134667677542  111 122555554321  1235678


Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL  133 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~  133 (184)
                      ++++.+++....+ +++.+|||||||||+||+||+.+|+++||||||++||+.++.++.+.|+++  +.|||+||||+++
T Consensus       195 ~~l~~l~l~~~~~-~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~  273 (590)
T PRK13409        195 EVVERLGLENILD-RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAV  273 (590)
T ss_pred             HHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            8999999986554 589999999999999999999999999999999999999999999999876  8899999999999


Q ss_pred             HHhhcCeEEEEeCC
Q psy11928        134 IRDTECTLWVIENQ  147 (184)
Q Consensus       134 ~~~~~~~i~~l~~g  147 (184)
                      +..+||+++++.++
T Consensus       274 l~~~~D~v~vl~~~  287 (590)
T PRK13409        274 LDYLADNVHIAYGE  287 (590)
T ss_pred             HHHhCCEEEEEeCC
Confidence            99999999999763

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=8.2e-26  Score=168.58  Aligned_cols=151  Identities=24%  Similarity=0.301  Sum_probs=120.7

Q ss_pred             cccCcccCCceeEEecC--------------------CeEEEEEecCCCCCC----CccCCHHHHHHH----hcCCCHHH
Q psy11928          2 YAHCDLQPQQGELKKNH--------------------RLRIGRFDQHSGEHL----TAEETPAEYLQR----LFNLPYEK   53 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------------~~~ig~v~q~~~~~l----~~~~~~~~~~~~----~~~~~~~~   53 (184)
                      .|+|-+.|++|+|.+..                    +...|||.|+|.+.+    +..-|+-+.+..    .|+.-+..
T Consensus        51 ~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~  130 (258)
T COG4107          51 CISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE  130 (258)
T ss_pred             HHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHH
Confidence            46788999999997531                    345999999996332    334455444332    22222455


Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEec
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSH  129 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsH  129 (184)
                      +.+.++.+.++...-+..|..+|||||||++|||.|+..|+++++||||.|||......+.++++    +++.++++|||
T Consensus       131 a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTH  210 (258)
T COG4107         131 AQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH  210 (258)
T ss_pred             HHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEec
Confidence            77889999886543334799999999999999999999999999999999999999999888875    56889999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEEe
Q psy11928        130 DERLIRDTECTLWVIENQTIEEI  152 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~~  152 (184)
                      |+..+.-+++|..+|++|.+++.
T Consensus       211 Dl~VarLla~rlmvmk~g~vve~  233 (258)
T COG4107         211 DLAVARLLADRLMVMKQGQVVES  233 (258)
T ss_pred             hhHHHHHhhhcceeecCCCEecc
Confidence            99999999999999999998763

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.94  E-value=3.2e-26  Score=200.13  Aligned_cols=139  Identities=28%  Similarity=0.334  Sum_probs=111.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .|+|+++|++|+|.+++           ++.+||++|++.  +. ..|+.+++... ...+++++.+.++..++.+...+
T Consensus       367 ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~  443 (529)
T TIGR02857       367 LLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF--LF-AGTIAENIRLARPDASDAEIRRALERAGLDEFVAA  443 (529)
T ss_pred             HHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCc--cc-CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHh
Confidence            58899999999998764           346999999984  32 35777777543 23355667777777776532211


Q ss_pred             ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                                ....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+.  ++|+|+|||+++.+. .
T Consensus       444 lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~  522 (529)
T TIGR02857       444 LPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-R  522 (529)
T ss_pred             CcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-h
Confidence                      135689999999999999999999999999999999999999999999875  579999999999986 5


Q ss_pred             cCeEEEE
Q psy11928        138 ECTLWVI  144 (184)
Q Consensus       138 ~~~i~~l  144 (184)
                      ||+|++|
T Consensus       523 ~d~i~~l  529 (529)
T TIGR02857       523 ADRIVVL  529 (529)
T ss_pred             CCEEEeC
Confidence            8998764

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=4.4e-26  Score=174.35  Aligned_cols=163  Identities=26%  Similarity=0.297  Sum_probs=126.3

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cC--CC--HHH--HHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FN--LP--YEK--ARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~--~~--~~~--~~~~l~~~   61 (184)
                      .|+|...|++|++.+++           .+.-+.+||+..  +....++.+.+...   ++  -.  +..  +.+.|...
T Consensus        46 ~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~--laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~  123 (259)
T COG4559          46 ALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSS--LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAAT  123 (259)
T ss_pred             HhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcc--cccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHc
Confidence            58999999999998764           245788999864  44445566655421   11  11  222  56788888


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLN------APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER  132 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~  132 (184)
                      ++..+.. +...+|||||||||.+||.|++      ++++|+||||||+||+.....++++.+++   +..|+.|-||++
T Consensus       124 d~~~la~-R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN  202 (259)
T COG4559         124 DLSGLAG-RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN  202 (259)
T ss_pred             Chhhhhc-cchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch
Confidence            8887665 5789999999999999999954      34589999999999999999999888765   679999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEEecCCh-hHHHHHHHHHhh
Q psy11928        133 LIRDTECTLWVIENQTIEEIDGDF-DDYRKELLEALG  168 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~~~~~~-~~~~~~~~~~~~  168 (184)
                      .+..+||||++|++|+++. .|++ +.+..+-++..+
T Consensus       203 LAA~YaDrivll~~Grv~a-~g~p~~vlt~Etl~~vy  238 (259)
T COG4559         203 LAAQYADRIVLLHQGRVIA-SGSPQDVLTDETLERVY  238 (259)
T ss_pred             HHHHhhheeeeeeCCeEee-cCCHHHhcCHHHHHHHh
Confidence            9999999999999999986 6655 445666555543

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=1.7e-26  Score=182.28  Aligned_cols=158  Identities=25%  Similarity=0.373  Sum_probs=120.8

Q ss_pred             cccCcccCCceeEEecCC----------eEEEEEecCCC-C--CCCccCCHHHHHHHhcCCCH----HHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNHR----------LRIGRFDQHSG-E--HLTAEETPAEYLQRLFNLPY----EKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~----------~~ig~v~q~~~-~--~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~l~   64 (184)
                      .|+|++.|++|.|.+++.          +++++++-+.. .  .+...++ .+.....+..+.    ++...+.+.++++
T Consensus        69 mLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds-~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~  147 (325)
T COG4586          69 MLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS-LEVLKLIYEIPDDEFAERLDFLTEILDLE  147 (325)
T ss_pred             HHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh-HHHHHHHHhCCHHHHHHHHHHHHHHhcch
Confidence            589999999999998641          23544433221 0  0111112 122223344443    4455677888998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~  140 (184)
                      +..+. ++..||-|||.|+.||.+|+++|+||+|||||-|||..++..+.+.++++    +.||+++||+++.+...|+|
T Consensus       148 ~~lk~-~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r  226 (325)
T COG4586         148 GFLKW-PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDR  226 (325)
T ss_pred             hhhhh-hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh
Confidence            87765 89999999999999999999999999999999999999999999999865    57999999999999999999


Q ss_pred             EEEEeCCeEEEecCChhHHHHH
Q psy11928        141 LWVIENQTIEEIDGDFDDYRKE  162 (184)
Q Consensus       141 i~~l~~g~i~~~~~~~~~~~~~  162 (184)
                      |+.|+.|+++ ++|+..++.++
T Consensus       227 v~~I~~Gqlv-~dg~l~~l~~~  247 (325)
T COG4586         227 VLLIDQGQLV-FDGTLAQLQEQ  247 (325)
T ss_pred             eEEeeCCcEe-ecccHHHHHHH
Confidence            9999999997 57776665443

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.7e-27  Score=179.26  Aligned_cols=162  Identities=20%  Similarity=0.315  Sum_probs=128.1

Q ss_pred             ccCcccCCceeEEecCC-----------eEEEEEecCCCCCCCccCCHHHHHHH--h-c---CCC---HHHHHHHHhhCC
Q psy11928          3 AHCDLQPQQGELKKNHR-----------LRIGRFDQHSGEHLTAEETPAEYLQR--L-F---NLP---YEKARKQLGTFG   62 (184)
Q Consensus         3 ~~G~~~p~~G~i~~~~~-----------~~ig~v~q~~~~~l~~~~~~~~~~~~--~-~---~~~---~~~~~~~l~~~~   62 (184)
                      ++.++++++|+|.+++.           ++++.+-|++.  +....|+.+.+..  + +   .+.   +..+++.++.++
T Consensus        47 ~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~--i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~  124 (252)
T COG4604          47 MSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENH--INSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH  124 (252)
T ss_pred             HHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhch--hhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhc
Confidence            56788999999987652           34677777653  4445566554432  1 1   121   345788899999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhc
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~  138 (184)
                      |++..+ ++..+||||||||+.+|..++++.++++||||.|+||....-.+++.++    ++++||++|-||.+|+..++
T Consensus       125 L~~l~d-ryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Ys  203 (252)
T COG4604         125 LEDLSD-RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYS  203 (252)
T ss_pred             ccchHH-HhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhh
Confidence            987654 6899999999999999999999999999999999999999888888875    46899999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHH-HHHHHHHhh
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY-RKELLEALG  168 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~-~~~~~~~~~  168 (184)
                      |.|+.+++|+++. .|++++. ..+.++++.
T Consensus       204 D~IVAlK~G~vv~-~G~~~eii~~~~L~eiy  233 (252)
T COG4604         204 DHIVALKNGKVVK-QGSPDEIIQPEILSEIY  233 (252)
T ss_pred             hheeeecCCEEEe-cCCHHHhcCHHHHHHHh
Confidence            9999999999975 6777664 445555554

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.94  E-value=3e-26  Score=201.46  Aligned_cols=144  Identities=18%  Similarity=0.163  Sum_probs=111.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      .|+|+++|++|+|.+++           +..+++++|++.  +. ..++.++.  ......+++.+.++.+++.+.....
T Consensus       387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~l  461 (555)
T TIGR01194       387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH--LF-DDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIE  461 (555)
T ss_pred             HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChh--hh-hhhhhccc--ccchhHHHHHHHHHHcCCchhhccc
Confidence            57899999999998764           346999999874  21 12222221  1122345677888898887543211


Q ss_pred             -----cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-H---hcCcEEEEEecCHHHHHhhcCeE
Q psy11928         71 -----KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-N---EYKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        71 -----~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~---~~~~tiiivsHd~~~~~~~~~~i  141 (184)
                           ...+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+ .   ..++|+|+|||+++.+. .||+|
T Consensus       462 p~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i  540 (555)
T TIGR01194       462 DGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQI  540 (555)
T ss_pred             ccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEE
Confidence                 23679999999999999999999999999999999999999987654 2   34789999999998775 79999


Q ss_pred             EEEeCCeEEE
Q psy11928        142 WVIENQTIEE  151 (184)
Q Consensus       142 ~~l~~g~i~~  151 (184)
                      +++++|++++
T Consensus       541 ~~l~~G~i~~  550 (555)
T TIGR01194       541 IKLAAGCIVK  550 (555)
T ss_pred             EEEECCEEEE
Confidence            9999999875

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.94  E-value=4.3e-26  Score=217.24  Aligned_cols=147  Identities=22%  Similarity=0.281  Sum_probs=115.7

Q ss_pred             CceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc--------
Q psy11928         10 QQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT--------   69 (184)
Q Consensus        10 ~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~--------   69 (184)
                      ++|+|.+++           +..||||+|+|.  + ...|+.+++... ...+.+++.+.++..++.++...        
T Consensus      1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--L-F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~ 1351 (1466)
T PTZ00265       1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--L-FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTN 1351 (1466)
T ss_pred             CCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCc
Confidence            699998764           567999999984  3 246777877653 23456667777766665432211        


Q ss_pred             --ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEE
Q psy11928         70 --IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        70 --~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                        ....+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|.+.    +.|+|+|||+++.+.. ||+|++
T Consensus      1352 VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivv 1430 (1466)
T PTZ00265       1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVV 1430 (1466)
T ss_pred             cCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEE
Confidence              134679999999999999999999999999999999999999999999765    6799999999999875 899999


Q ss_pred             EeC----CeEEEecCChhHHH
Q psy11928        144 IEN----QTIEEIDGDFDDYR  160 (184)
Q Consensus       144 l~~----g~i~~~~~~~~~~~  160 (184)
                      |++    |+++...|+.+++.
T Consensus      1431 l~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1431 FNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred             EeCCCCCCCEEEEecCHHHHH
Confidence            999    88553367766654

>PLN03073 ABC transporter F family; Provisional

Probab=99.94  E-value=8.3e-26  Score=202.94  Aligned_cols=110  Identities=26%  Similarity=0.483  Sum_probs=99.2

Q ss_pred             HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCH
Q psy11928         52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE  131 (184)
Q Consensus        52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~  131 (184)
                      .++.+++..+|+.....++++.+|||||||||+||++|+.+|++||||||||+||+.++.++.++|++++.|||+||||+
T Consensus       322 ~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~  401 (718)
T PLN03073        322 ARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAR  401 (718)
T ss_pred             HHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCH
Confidence            45667888899964434468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      +++..+|+++++|++|++..+.|+++.+..
T Consensus       402 ~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~  431 (718)
T PLN03073        402 EFLNTVVTDILHLHGQKLVTYKGDYDTFER  431 (718)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence            999999999999999999878888876554

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.94  E-value=6.8e-26  Score=217.10  Aligned_cols=155  Identities=21%  Similarity=0.213  Sum_probs=123.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccc---
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHA---   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---   67 (184)
                      .|.|+++|++|+|.+++           |.+|+++||+|.  +. ..|+.+++.-....+++++.+.++..++.+..   
T Consensus      1331 lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~--LF-~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~l 1407 (1522)
T TIGR00957      1331 GLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPV--LF-SGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSAL 1407 (1522)
T ss_pred             HHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCc--cc-CccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhC
Confidence            47899999999999875           567999999984  32 24677776422234566777777776654321   


Q ss_pred             ----cc---ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928         68 ----HT---IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        68 ----~~---~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~  138 (184)
                          +.   ....+||||||||++|||||+.+|+||||||||++||.++...+.+.|++.  +.|+|+|+|+++.+.. |
T Consensus      1408 p~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~ 1486 (1522)
T TIGR00957      1408 PDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-Y 1486 (1522)
T ss_pred             ccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-C
Confidence                11   134679999999999999999999999999999999999999999999764  5799999999999986 7


Q ss_pred             CeEEEEeCCeEEEecCChhHHHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      |+|++|++|++++ .|++++..+
T Consensus      1487 DrIlVld~G~IvE-~G~~~eLl~ 1508 (1522)
T TIGR00957      1487 TRVIVLDKGEVAE-FGAPSNLLQ 1508 (1522)
T ss_pred             CEEEEEECCEEEE-ECCHHHHHh
Confidence            9999999999987 566655543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0057|consensus

Probab=99.94  E-value=8.4e-26  Score=192.08  Aligned_cols=152  Identities=26%  Similarity=0.286  Sum_probs=120.6

Q ss_pred             cCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc--
Q psy11928          4 HCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT--   69 (184)
Q Consensus         4 ~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~--   69 (184)
                      .+..+ ++|+|.+++           |+.||||||+..  + ..+|+..++... ...+.+++.+..+++|+.+-..+  
T Consensus       399 lrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~--L-FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~  474 (591)
T KOG0057|consen  399 LRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV--L-FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLP  474 (591)
T ss_pred             HHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc--c-cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhcc
Confidence            34555 899998875           567999999863  2 456776666432 23456778888888888653221  


Q ss_pred             --------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcC
Q psy11928         70 --------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        70 --------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~  139 (184)
                              .+...|||||||||+||||++.+|+|+++|||||+||.++...+.+.+...  ++|+|+|-|+++.+.. ||
T Consensus       475 ~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~D  553 (591)
T KOG0057|consen  475 DGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FD  553 (591)
T ss_pred             ccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CC
Confidence                    134679999999999999999999999999999999999999999999763  6899999999999986 89


Q ss_pred             eEEEEeCCeEEEecCChhHHHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      +|+++++|++.+ .|+.+++..
T Consensus       554 kI~~l~nG~v~e-~gth~ell~  574 (591)
T KOG0057|consen  554 KIIVLDNGTVKE-YGTHSELLA  574 (591)
T ss_pred             EEEEEECCeeEE-eccHHHHhh
Confidence            999999999987 455555443

>PTZ00243 ABC transporter; Provisional

Probab=99.93  E-value=1e-25  Score=215.87  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=124.3

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT-   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-   69 (184)
                      .|.|+++|++|+|.+++           ++.||++||+|.  +. ..|+.+++......+.+++.+.++..++.+.... 
T Consensus      1355 lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~--LF-~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~l 1431 (1560)
T PTZ00243       1355 TFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPV--LF-DGTVRQNVDPFLEASSAEVWAALELVGLRERVASE 1431 (1560)
T ss_pred             HHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCc--cc-cccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhC
Confidence            47899999999998764           567999999984  33 3477777643223456778888888877543211 


Q ss_pred             ---------ccccCCChhHHHHHHHHHHHhcC-CCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         70 ---------IKMKDLSGGQKARVALAELTLNA-PDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        70 ---------~~~~~LSgG~kqrv~laral~~~-p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                               ....+||||||||++|||||+.+ |+|||||||||+||+.+.+.+.+.|.+.  +.|+|+|+|+++.+.. 
T Consensus      1432 p~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~- 1510 (1560)
T PTZ00243       1432 SEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ- 1510 (1560)
T ss_pred             cccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-
Confidence                     12367999999999999999995 8999999999999999999999999764  5799999999999975 


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||+|++|++|++++ .|+++++.
T Consensus      1511 ~DrIlVLd~G~VvE-~Gt~~eLl 1532 (1560)
T PTZ00243       1511 YDKIIVMDHGAVAE-MGSPRELV 1532 (1560)
T ss_pred             CCEEEEEECCEEEE-ECCHHHHH
Confidence            89999999999987 56666654

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=1.1e-25  Score=169.11  Aligned_cols=153  Identities=23%  Similarity=0.240  Sum_probs=126.5

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHH----HhcCCC----HHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQ----RLFNLP----YEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~----~~~~~~----~~~~~~~l~~~~   62 (184)
                      .|+|.++|++|+|.+++           .+.|-++||+|+..+.++.++...+.    ....++    .+++.+-|..+|
T Consensus        58 MlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VG  137 (267)
T COG4167          58 MLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVG  137 (267)
T ss_pred             HHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhc
Confidence            47999999999998764           34699999999866777776544332    222222    245667789999


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhhc
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~  138 (184)
                      +-++..+.++..||.||||||++||||+.+|+|+|.||..++||...+.++.++.-    +.|.+-|+|+.++..++.++
T Consensus       138 L~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~  217 (267)
T COG4167         138 LLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHIS  217 (267)
T ss_pred             cCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhc
Confidence            86554556899999999999999999999999999999999999999999988764    45889999999999999999


Q ss_pred             CeEEEEeCCeEEEecC
Q psy11928        139 CTLWVIENQTIEEIDG  154 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~  154 (184)
                      |.|++|+.|++++++.
T Consensus       218 D~viVM~EG~vvE~G~  233 (267)
T COG4167         218 DQVLVMHEGEVVERGS  233 (267)
T ss_pred             ccEEEEecCceeecCC
Confidence            9999999999998654

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.93  E-value=1.6e-25  Score=199.00  Aligned_cols=154  Identities=21%  Similarity=0.230  Sum_probs=120.3

Q ss_pred             cccCcccCC---ceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH---hc---CCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQ---QGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF---NLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~---~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~---~~~----~~~~~~~l~~   60 (184)
                      +|+|..+|.   +|+|.+++        ++.+||++|++.  +.+..|+.+.+..   ..   ...    .+++.++++.
T Consensus        70 ~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~  147 (617)
T TIGR00955        70 ALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDL--FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQA  147 (617)
T ss_pred             HHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccc--cCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            578988875   79998765        246899999874  3344455554421   11   111    2347788999


Q ss_pred             CCCCccccccccc------CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928         61 FGLAGHAHTIKMK------DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE  131 (184)
Q Consensus        61 ~~l~~~~~~~~~~------~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~  131 (184)
                      +|+.+..+. +++      .|||||||||+||++|+.+|++++|||||+|||+.+...+++.+++.   +.|||+++|++
T Consensus       148 lgL~~~~~t-~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~  226 (617)
T TIGR00955       148 LGLRKCANT-RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP  226 (617)
T ss_pred             cCchhcCcC-ccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            999765543 565      59999999999999999999999999999999999999999998764   68999999998


Q ss_pred             H-HHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        132 R-LIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~-~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      . .+...+|++++|++|+++. .|+.++.
T Consensus       227 ~~~i~~~~D~i~ll~~G~~v~-~G~~~~~  254 (617)
T TIGR00955       227 SSELFELFDKIILMAEGRVAY-LGSPDQA  254 (617)
T ss_pred             CHHHHHHhceEEEeeCCeEEE-ECCHHHH
Confidence            5 7788999999999999974 5655443

>KOG0058|consensus

Probab=99.93  E-value=8.2e-26  Score=197.46  Aligned_cols=153  Identities=28%  Similarity=0.340  Sum_probs=115.6

Q ss_pred             ccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhh---------C
Q psy11928          3 AHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGT---------F   61 (184)
Q Consensus         3 ~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~---------~   61 (184)
                      |..++.|++|+|.+++           +++||+|.|+|-  +. .-++.+++... .+.+.+++....++         |
T Consensus       514 L~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv--LF-s~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~  590 (716)
T KOG0058|consen  514 LLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPV--LF-SGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNF  590 (716)
T ss_pred             HHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccce--ee-cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC
Confidence            4457899999999875           568999999984  22 23455665421 13344444433322         2


Q ss_pred             --CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         62 --GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 --~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                        |.+..-. .+-.+||||||||++|||||+.+|.||||||.||+||.++...+.+.+.+.  +.|||+|.|.++-+++ 
T Consensus       591 p~gY~T~VG-EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-  668 (716)
T KOG0058|consen  591 PDGYNTVVG-EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-  668 (716)
T ss_pred             ccccccccC-CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-
Confidence              2222222 256799999999999999999999999999999999999999999999754  6899999999999986 


Q ss_pred             cCeEEEEeCCeEEEecCChhHHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      +|+|+++++|++++ .|+.++..+
T Consensus       669 Ad~Ivvi~~G~V~E-~G~h~eLl~  691 (716)
T KOG0058|consen  669 ADQIVVIDKGRVVE-MGTHDELLS  691 (716)
T ss_pred             ccEEEEEcCCeEEe-cccHHHHhh
Confidence            79999999999987 566555443

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.93  E-value=1.7e-25  Score=213.14  Aligned_cols=142  Identities=25%  Similarity=0.348  Sum_probs=111.7

Q ss_pred             cccCcccCCceeEEec-C-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc----------------------
Q psy11928          2 YAHCDLQPQQGELKKN-H-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF----------------------   47 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~-~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----------------------   47 (184)
                      .|+|+++|++|+|.++ +           ++.||||+|++.  +.. .|+.+++....                      
T Consensus       430 lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~--LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~  506 (1466)
T PTZ00265        430 LIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPL--LFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE  506 (1466)
T ss_pred             HHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEeccccc--chh-ccHHHHHHhcCCCccccchhccccccccccccc
Confidence            5789999999999983 2           346999999974  332 36666654310                      


Q ss_pred             ------------------------------------CCCHHHHHHHHhhCCCCcccc----------cccccCCChhHHH
Q psy11928         48 ------------------------------------NLPYEKARKQLGTFGLAGHAH----------TIKMKDLSGGQKA   81 (184)
Q Consensus        48 ------------------------------------~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgG~kq   81 (184)
                                                          ..+.+++.+.++.+++.+...          .....+|||||||
T Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQ  586 (1466)
T PTZ00265        507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQ  586 (1466)
T ss_pred             cccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHH
Confidence                                                012345666777776654311          2357899999999


Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      |++|||||+.+|+||||||||++||+.+...+.+.|.+.    +.|+|+|||+++.+. .||+|++|++|
T Consensus       587 RiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g  655 (1466)
T PTZ00265        587 RISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR  655 (1466)
T ss_pred             HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence            999999999999999999999999999999999999765    579999999999985 79999999986

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.93  E-value=8.6e-25  Score=165.97  Aligned_cols=94  Identities=26%  Similarity=0.329  Sum_probs=82.1

Q ss_pred             HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11928         55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA--PDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSH  129 (184)
Q Consensus        55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~--p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH  129 (184)
                      .+.++.+++.....++++.+||||||||++||||++.+  |+++||||||++||+.++..+.+.+++   .+.|||+|||
T Consensus        68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH  147 (176)
T cd03238          68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH  147 (176)
T ss_pred             HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            35788889875322358999999999999999999999  999999999999999999999998876   3789999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeE
Q psy11928        130 DERLIRDTECTLWVIENQTI  149 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i  149 (184)
                      +++++. .||++++|++|+.
T Consensus       148 ~~~~~~-~~d~i~~l~~g~~  166 (176)
T cd03238         148 NLDVLS-SADWIIDFGPGSG  166 (176)
T ss_pred             CHHHHH-hCCEEEEECCCCC
Confidence            999985 7999999987654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.93  E-value=1.8e-25  Score=195.40  Aligned_cols=127  Identities=29%  Similarity=0.373  Sum_probs=102.5

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCCCCccccc-
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFGLAGHAHT-   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~-   69 (184)
                      .|+|+++|++|+|.+++          ++.||||||++.  + ...|+.+++... ...+++++.+.++..+++++... 
T Consensus       380 lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~--l-F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~l  456 (529)
T TIGR02868       380 LLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAH--L-FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSL  456 (529)
T ss_pred             HHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcc--c-ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence            57899999999999875          357999999984  3 245777777653 23456777788887777543221 


Q ss_pred             ---------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCH
Q psy11928         70 ---------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDE  131 (184)
Q Consensus        70 ---------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~  131 (184)
                               ..-..||||||||++||||++.+|+++|||||||+||+.+...+.+.+.+.  ++|+|+|||++
T Consensus       457 p~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       457 PDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             cccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                     123579999999999999999999999999999999999999999999875  57999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0062|consensus

Probab=99.92  E-value=6e-26  Score=191.65  Aligned_cols=111  Identities=31%  Similarity=0.501  Sum_probs=103.3

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD  136 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~  136 (184)
                      +|..+|++++...+++++||||+|.|++||||+..+||+||||||||+||..+..||.++|..++.|+|+||||..|+..
T Consensus       181 ~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~  260 (582)
T KOG0062|consen  181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNT  260 (582)
T ss_pred             HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHH
Confidence            88899999887777999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHHHHHHHHh
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYRKELLEAL  167 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~~~~~~~~  167 (184)
                      +|..|+-+++-++..|.|+++.+.+..-+..
T Consensus       261 V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~  291 (582)
T KOG0062|consen  261 VCTDIIHLENLKLDYYKGNYSQFVKTKPEAK  291 (582)
T ss_pred             HHHHHHHHhhhhhhhhcCcHHHHHHhhHHhh
Confidence            9999999999899889999998877655444

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.92  E-value=6.2e-25  Score=210.10  Aligned_cols=153  Identities=20%  Similarity=0.244  Sum_probs=121.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      .|.|+++ ++|+|.+++           |.+++|+||+|.  +. ..|+.+++.-....+.+++.+.++.+++.+.....
T Consensus      1264 lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~--LF-~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~l 1339 (1490)
T TIGR01271      1264 ALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVF--IF-SGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQF 1339 (1490)
T ss_pred             HHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCc--cC-ccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhC
Confidence            4678876 799998764           567999999984  32 24677776432234567788888888775432211


Q ss_pred             ----------cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhc
Q psy11928         71 ----------KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        71 ----------~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~  138 (184)
                                .-.+||||||||++|||||+.+|+||||||||++||..+...+.+.|++.  ++|||+|||.++.+.. |
T Consensus      1340 p~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~ 1418 (1490)
T TIGR01271      1340 PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-C 1418 (1490)
T ss_pred             ccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-C
Confidence                      12479999999999999999999999999999999999999999999865  5799999999999975 8


Q ss_pred             CeEEEEeCCeEEEecCChhHHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |+|++|++|+++++ |++.++.
T Consensus      1419 DrIlvL~~G~ivE~-g~p~~Ll 1439 (1490)
T TIGR01271      1419 QQFLVIEGSSVKQY-DSIQKLL 1439 (1490)
T ss_pred             CEEEEEECCEEEEe-CCHHHHH
Confidence            99999999999874 4554443

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.92  E-value=9.1e-25  Score=209.38  Aligned_cols=150  Identities=19%  Similarity=0.250  Sum_probs=115.0

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCC-----------Ccccccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGL-----------AGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~   70 (184)
                      .|+|+++|++|+|.+++  .+||++|++.  +. ..|+.+++......+.++..+.++..++           ..... .
T Consensus       683 ~l~g~~~~~~G~i~~~g--~i~yv~Q~~~--l~-~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~  756 (1522)
T TIGR00957       683 ALLAEMDKVEGHVHMKG--SVAYVPQQAW--IQ-NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIG-E  756 (1522)
T ss_pred             HHhCCCccCCcEEEECC--EEEEEcCCcc--cc-CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceec-C
Confidence            57899999999998875  6999999974  32 3577777654322233333333322222           11222 3


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh-----cCcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE-----YKGGVIIVSHDERLIRDTECTLWVIE  145 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~-----~~~tiiivsHd~~~~~~~~~~i~~l~  145 (184)
                      +..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+     .++|+|+|||+++.+.. ||+|++|+
T Consensus       757 ~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~  835 (1522)
T TIGR00957       757 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMS  835 (1522)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEec
Confidence            6789999999999999999999999999999999999999999988742     25799999999999976 99999999


Q ss_pred             CCeEEEecCChhHH
Q psy11928        146 NQTIEEIDGDFDDY  159 (184)
Q Consensus       146 ~g~i~~~~~~~~~~  159 (184)
                      +|++.+ .|++++.
T Consensus       836 ~G~i~~-~g~~~~l  848 (1522)
T TIGR00957       836 GGKISE-MGSYQEL  848 (1522)
T ss_pred             CCeEEe-eCCHHHH
Confidence            999975 5665544

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.2e-25  Score=175.40  Aligned_cols=149  Identities=22%  Similarity=0.318  Sum_probs=116.6

Q ss_pred             cccCcccCCceeEEec------------CCeEEEEEecCCCCCCCccCCHHHHHH--------Hhc-CCCH---HHHHHH
Q psy11928          2 YAHCDLQPQQGELKKN------------HRLRIGRFDQHSGEHLTAEETPAEYLQ--------RLF-NLPY---EKARKQ   57 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~------------~~~~ig~v~q~~~~~l~~~~~~~~~~~--------~~~-~~~~---~~~~~~   57 (184)
                      +++|...|++|.+...            .+++||+|.-.....+....++.+.+.        .++ ..++   .++..+
T Consensus        76 ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l  155 (257)
T COG1119          76 LLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL  155 (257)
T ss_pred             HHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH
Confidence            5789999999988643            256799987643222233333332211        111 2222   457788


Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-----CcEEEEEecCHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-----KGGVIIVSHDER  132 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsHd~~  132 (184)
                      ++.+|+....+ ++..+||-||||||.|||||+.+|++|||||||+|||..++..+.+.+.+.     +.++|+|||..+
T Consensus       156 le~~g~~~la~-r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e  234 (257)
T COG1119         156 LELLGAKHLAD-RPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE  234 (257)
T ss_pred             HHHcchhhhcc-CchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence            99999987554 689999999999999999999999999999999999999999999999765     348999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEE
Q psy11928        133 LIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~  151 (184)
                      ++....++++.+++|+++.
T Consensus       235 Ei~~~~th~lll~~g~v~~  253 (257)
T COG1119         235 EIPPCFTHRLLLKEGEVVA  253 (257)
T ss_pred             hcccccceEEEeeCCceee
Confidence            9998889999999999864

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.92  E-value=1.2e-24  Score=208.11  Aligned_cols=150  Identities=19%  Similarity=0.257  Sum_probs=112.6

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCc-----------ccccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAG-----------HAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~   70 (184)
                      .|+|+.+|++|+|.+++  .|+|++|++.  +.. .|+.+++........++..+.++..++..           ... .
T Consensus       471 ~l~G~~~~~~G~i~~~g--~iayv~Q~~~--l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg-~  544 (1490)
T TIGR01271       471 MIMGELEPSEGKIKHSG--RISFSPQTSW--IMP-GTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLG-E  544 (1490)
T ss_pred             HHhCCCCCCCceEEECC--EEEEEeCCCc--cCC-ccHHHHHHhccccchHHHHHHHHHHhHHHHHHhcccccccccc-C
Confidence            57899999999999865  6999999974  333 36777665322222222222222222211           122 3


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HHhc--CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA-INEY--KGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      +..+||||||||++||||++.+|+++||||||++||+.+.+.+.+. +...  +.|+|+|||+++.+.. ||++++|++|
T Consensus       545 ~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g  623 (1490)
T TIGR01271       545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEG  623 (1490)
T ss_pred             cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECC
Confidence            5789999999999999999999999999999999999999999874 5443  6899999999999975 9999999999


Q ss_pred             eEEEecCChhHH
Q psy11928        148 TIEEIDGDFDDY  159 (184)
Q Consensus       148 ~i~~~~~~~~~~  159 (184)
                      ++.. .|++++.
T Consensus       624 ~i~~-~g~~~~l  634 (1490)
T TIGR01271       624 VCYF-YGTFSEL  634 (1490)
T ss_pred             EEEE-EcCHHHH
Confidence            9875 5555544

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.92  E-value=1e-24  Score=207.39  Aligned_cols=150  Identities=17%  Similarity=0.196  Sum_probs=117.2

Q ss_pred             cccCccc---CCceeEEecC-------CeEEEEEecCCCCCCCccCCHHHHHHH---hc---CCCH----HHHHHHHhhC
Q psy11928          2 YAHCDLQ---PQQGELKKNH-------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF---NLPY----EKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~---p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~---~~~~----~~~~~~l~~~   61 (184)
                      +|+|+.+   |++|+|.+++       ++.+||++|++.  +....|+.+.+..   ..   ..+.    +++.++++.+
T Consensus       808 ~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~--~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l  885 (1394)
T TIGR00956       808 VLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDL--HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLL  885 (1394)
T ss_pred             HHhCCCCCCCcceeEEEECCEECChhhhcceeeeccccc--CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHc
Confidence            5889887   7899998765       346999999863  2334455554432   11   1121    3467899999


Q ss_pred             CCCccccccccc----CCChhHHHHHHHHHHHhcCCC-EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928         62 GLAGHAHTIKMK----DLSGGQKARVALAELTLNAPD-VIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL  133 (184)
Q Consensus        62 ~l~~~~~~~~~~----~LSgG~kqrv~laral~~~p~-illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~  133 (184)
                      |+.+..+ +.++    +|||||||||+||++|+.+|+ +|+|||||+|||+.+...+.+.|++.   +.|||++||+++.
T Consensus       886 ~L~~~~d-~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~  964 (1394)
T TIGR00956       886 EMESYAD-AVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA  964 (1394)
T ss_pred             CChhhCC-CeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence            9986655 4666    799999999999999999997 99999999999999999999999764   6799999999986


Q ss_pred             -HHhhcCeEEEEeCC-eEEEecCC
Q psy11928        134 -IRDTECTLWVIENQ-TIEEIDGD  155 (184)
Q Consensus       134 -~~~~~~~i~~l~~g-~i~~~~~~  155 (184)
                       +...+|++++|++| +++. .|+
T Consensus       965 ~~~~~~D~vl~L~~GG~iv~-~G~  987 (1394)
T TIGR00956       965 ILFEEFDRLLLLQKGGQTVY-FGD  987 (1394)
T ss_pred             HHHHhcCEEEEEcCCCEEEE-ECC
Confidence             44679999999987 8865 444

>KOG0055|consensus

Probab=99.92  E-value=7.7e-25  Score=200.55  Aligned_cols=151  Identities=26%  Similarity=0.338  Sum_probs=119.5

Q ss_pred             CcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCC----------
Q psy11928          5 CDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFG----------   62 (184)
Q Consensus         5 G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~----------   62 (184)
                      ..+.|++|.|.+++           |+++|.|.|+|.  | ...|+.+++... .+.+.+++.+.++..+          
T Consensus      1038 RfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~--L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~ 1114 (1228)
T KOG0055|consen 1038 RFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV--L-FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQ 1114 (1228)
T ss_pred             HhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch--h-hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcC
Confidence            46789999998864           568999999984  3 245677776533 2235555555544433          


Q ss_pred             -CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcC
Q psy11928         63 -LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        63 -l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~  139 (184)
                       .+..... +-.+||||||||++||||++.+|+||||||.||+||.++.+.+.+.|.+.  +.|.|+|.|.+.-+.. ||
T Consensus      1115 GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD 1192 (1228)
T KOG0055|consen 1115 GYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-AD 1192 (1228)
T ss_pred             cccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CC
Confidence             2222222 56799999999999999999999999999999999999999999999865  7899999999999975 89


Q ss_pred             eEEEEeCCeEEEecCChhHHHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      .|+++++|+|++ .|+-+++.+
T Consensus      1193 ~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1193 VIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred             EEEEEECCEEEe-cccHHHHHh
Confidence            999999999987 677666554

>KOG0059|consensus

Probab=99.92  E-value=4.3e-25  Score=202.52  Aligned_cols=149  Identities=28%  Similarity=0.376  Sum_probs=125.0

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCH----HHHHHHHhhCCC
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EKARKQLGTFGL   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~l   63 (184)
                      .++|..+|++|++.+.+            ++.+||+||...  +.+|+++++ +++....+.+.    +.+..+++.+++
T Consensus       610 mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL-~~~arlrG~~~~di~~~v~~ll~~~~L  688 (885)
T KOG0059|consen  610 MLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHL-EFYARLRGLPRSDIGSAIEKLLRLVGL  688 (885)
T ss_pred             HHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHH-HHHHHHcCCChhHHHHHHHHHHHHcCC
Confidence            47899999999998742            345999999864  456666653 34444445443    346778999999


Q ss_pred             CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         64 AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        64 ~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      .++.+ ++++.||||+|+|+++|.|++.+|++++|||||+|+||.+++.+++++.+.   +++||++||.+++++.+|+|
T Consensus       689 ~~~~~-~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR  767 (885)
T KOG0059|consen  689 GPYAN-KQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTR  767 (885)
T ss_pred             hhhhc-cchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhh
Confidence            98876 589999999999999999999999999999999999999999999999764   34999999999999999999


Q ss_pred             EEEEeCCeEEEe
Q psy11928        141 LWVIENQTIEEI  152 (184)
Q Consensus       141 i~~l~~g~i~~~  152 (184)
                      +.+|.+|++..+
T Consensus       768 ~aImv~G~l~ci  779 (885)
T KOG0059|consen  768 TAIMVIGQLRCI  779 (885)
T ss_pred             hheeecCeeEEe
Confidence            999999998753

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.92  E-value=8.3e-24  Score=166.65  Aligned_cols=96  Identities=27%  Similarity=0.316  Sum_probs=84.5

Q ss_pred             HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11928         55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSH  129 (184)
Q Consensus        55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH  129 (184)
                      .+.++.+++.....++++.+|||||||||+||||++.+|  +++||||||++||+.++..+.+.+.+   .+.|||+|||
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH  197 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH  197 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            567899999753234589999999999999999999998  59999999999999999999998865   3679999999


Q ss_pred             CHHHHHhhcCeEEEE------eCCeEEE
Q psy11928        130 DERLIRDTECTLWVI------ENQTIEE  151 (184)
Q Consensus       130 d~~~~~~~~~~i~~l------~~g~i~~  151 (184)
                      |++++. +||++++|      ++|+|++
T Consensus       198 ~~~~~~-~~d~i~~l~~~~~~~~G~iv~  224 (226)
T cd03270         198 DEDTIR-AADHVIDIGPGAGVHGGEIVA  224 (226)
T ss_pred             CHHHHH-hCCEEEEeCCCccccCCEEEe
Confidence            999985 89999999      8888875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.92  E-value=2.2e-24  Score=160.69  Aligned_cols=74  Identities=42%  Similarity=0.594  Sum_probs=69.6

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      ||+||+||++|||+++.+|++++|||||++||+.++..+.+.+.+.   +.|++++||+++++..+||+++++++|+
T Consensus        81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            9999999999999999999999999999999999999999998764   4699999999999999999999998874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.92  E-value=2.6e-24  Score=206.01  Aligned_cols=153  Identities=18%  Similarity=0.238  Sum_probs=117.1

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc----------cc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT----------IK   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~   71 (184)
                      .|+|.++|++|.+. ..+..|+|++|+|.  +. ..|+.+++......++++..+.++..++.++...          .+
T Consensus       662 lLlG~~~~~~G~i~-~~~~~Iayv~Q~p~--Lf-~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~  737 (1495)
T PLN03232        662 AMLGELSHAETSSV-VIRGSVAYVPQVSW--IF-NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGER  737 (1495)
T ss_pred             HHhCCCcccCCCEE-EecCcEEEEcCccc--cc-cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCC
Confidence            47899999998774 34567999999984  32 4577777764433456666666666665432211          13


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHHh--cCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD-AINE--YKGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~--~~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      ..+||||||||++||||+..+|+|+|||||||+||+.+.+.+.+ .+..  .++|+|+|||++..+. .||+|++|++|+
T Consensus       738 G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~  816 (1495)
T PLN03232        738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGM  816 (1495)
T ss_pred             CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCE
Confidence            45799999999999999999999999999999999998887755 4543  3689999999999876 589999999999


Q ss_pred             EEEecCChhHHH
Q psy11928        149 IEEIDGDFDDYR  160 (184)
Q Consensus       149 i~~~~~~~~~~~  160 (184)
                      +++ .|++++..
T Consensus       817 i~~-~Gt~~eL~  827 (1495)
T PLN03232        817 IKE-EGTFAELS  827 (1495)
T ss_pred             EEE-ecCHHHHH
Confidence            976 56665543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.92  E-value=4.6e-24  Score=202.94  Aligned_cols=154  Identities=18%  Similarity=0.129  Sum_probs=116.4

Q ss_pred             cccCcc----cCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hc-------CCCHH----H
Q psy11928          2 YAHCDL----QPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF-------NLPYE----K   53 (184)
Q Consensus         2 ~~~G~~----~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~-------~~~~~----~   53 (184)
                      +|+|+.    +|++|+|.+++          +..++|++|+..  +.+..|+.+.+..   ..       +.+++    +
T Consensus       106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~  183 (1394)
T TIGR00956       106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV--HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKH  183 (1394)
T ss_pred             HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccc--cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence            577875    57999998764          235999999863  2333444443321   11       11221    2


Q ss_pred             -HHHHHhhCCCCccccc----ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEE
Q psy11928         54 -ARKQLGTFGLAGHAHT----IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGV  124 (184)
Q Consensus        54 -~~~~l~~~~l~~~~~~----~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~ti  124 (184)
                       .+.+++.+|+++..+.    ..++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++.    +.||
T Consensus       184 ~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tv  263 (1394)
T TIGR00956       184 IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTP  263 (1394)
T ss_pred             HHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEE
Confidence             2457899999765442    245789999999999999999999999999999999999999999998753    6799


Q ss_pred             EEEecCH-HHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        125 IIVSHDE-RLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       125 iivsHd~-~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      |+++|++ +.+...+|++++|++|+++. .|+.++
T Consensus       264 ii~~Hq~~~~i~~l~D~v~~L~~G~iv~-~G~~~~  297 (1394)
T TIGR00956       264 LVAIYQCSQDAYELFDKVIVLYEGYQIY-FGPADK  297 (1394)
T ss_pred             EEEecCCCHHHHHhhceEEEEeCCeEEE-ECCHHH
Confidence            9999996 78888999999999999864 565544

>PLN03130 ABC transporter C family member; Provisional

Probab=99.92  E-value=3.4e-24  Score=205.91  Aligned_cols=152  Identities=18%  Similarity=0.261  Sum_probs=117.5

Q ss_pred             cccCcccCCc-eeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc----------cc
Q psy11928          2 YAHCDLQPQQ-GELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH----------TI   70 (184)
Q Consensus         2 ~~~G~~~p~~-G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~   70 (184)
                      .|+|.++|++ |+|.+  +.+|+|++|+|.  +. ..|+.+++......++++..+.++..++.++..          ..
T Consensus       662 lLlG~~~~~~GG~I~l--~~~Iayv~Q~p~--Lf-ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe  736 (1622)
T PLN03130        662 AMLGELPPRSDASVVI--RGTVAYVPQVSW--IF-NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGE  736 (1622)
T ss_pred             HHHHhhccCCCceEEE--cCeEEEEcCccc--cC-CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccC
Confidence            4789999999 99975  567999999984  32 457777776543345566666666665543221          11


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHh--cCcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAINE--YKGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~--~~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      +..+||||||||++||||+..+|+|+|||||||+||+.+.+.+. +.+..  .++|+|+|||++..+. .||+|++|++|
T Consensus       737 ~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G  815 (1622)
T PLN03130        737 RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEG  815 (1622)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCC
Confidence            34679999999999999999999999999999999999887765 45554  3689999999999876 58999999999


Q ss_pred             eEEEecCChhHHH
Q psy11928        148 TIEEIDGDFDDYR  160 (184)
Q Consensus       148 ~i~~~~~~~~~~~  160 (184)
                      ++.+ .|++++..
T Consensus       816 ~i~e-~Gt~~eL~  827 (1622)
T PLN03130        816 MIKE-EGTYEELS  827 (1622)
T ss_pred             EEEE-eCCHHHHH
Confidence            9976 66666553

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=1.3e-24  Score=166.71  Aligned_cols=150  Identities=25%  Similarity=0.296  Sum_probs=117.1

Q ss_pred             CcccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--c----CCC-------HHHHHH
Q psy11928          1 MYAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--F----NLP-------YEKARK   56 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~----~~~-------~~~~~~   56 (184)
                      ++++|-+.|++|+|.+++           ...++-|||+|.....+..|+.+++...  .    +..       .+..++
T Consensus        50 n~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~  129 (263)
T COG1101          50 NAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRE  129 (263)
T ss_pred             HHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHH
Confidence            368999999999998764           2348889999863334555665554321  1    111       122444


Q ss_pred             HHhhC--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEecC
Q psy11928         57 QLGTF--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA----INEYKGGVIIVSHD  130 (184)
Q Consensus        57 ~l~~~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~----l~~~~~tiiivsHd  130 (184)
                      .+..+  |++..+.+ ++.-|||||||-++|+.|.+++|+||+|||-|++|||.....+++.    +.+.+.|.+||||+
T Consensus       130 ~l~~l~lgLenrL~~-~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn  208 (263)
T COG1101         130 RLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN  208 (263)
T ss_pred             HHhhcccchhhhhcC-hhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc
Confidence            55555  55666654 8999999999999999999999999999999999999998887754    45668899999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEE
Q psy11928        131 ERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      ++.+..+.+|.++|+.|+|+-
T Consensus       209 m~~Al~yG~RlImLh~G~Ivl  229 (263)
T COG1101         209 MEDALDYGNRLIMLHSGKIVL  229 (263)
T ss_pred             HHHHHhhCCeEEEEeCCeEEE
Confidence            999999999999999999863

>PLN03140 ABC transporter G family member; Provisional

Probab=99.91  E-value=5e-24  Score=202.80  Aligned_cols=151  Identities=17%  Similarity=0.183  Sum_probs=116.3

Q ss_pred             cccCcccC--CceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH---hc---CCCH----HHHHHHHhhC
Q psy11928          2 YAHCDLQP--QQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF---NLPY----EKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p--~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~---~~~~----~~~~~~l~~~   61 (184)
                      +|+|..++  .+|+|.+++        ++.+||++|++.  +.+..|+.+.+..   ..   ..+.    +.+.++++.+
T Consensus       925 ~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~l 1002 (1470)
T PLN03140        925 VLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI--HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELV 1002 (1470)
T ss_pred             HHcCCCCCCcccceEEECCccCChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHC
Confidence            57888763  689998764        245899999863  3334455544321   11   1121    2467899999


Q ss_pred             CCCcccccccc-----cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH-
Q psy11928         62 GLAGHAHTIKM-----KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER-  132 (184)
Q Consensus        62 ~l~~~~~~~~~-----~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~-  132 (184)
                      |+.+..+ .++     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++.   +.|||++||+++ 
T Consensus      1003 gL~~~~~-~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140       1003 ELDNLKD-AIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred             CChhHhC-CccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence            9986554 354     689999999999999999999999999999999999999999998764   689999999998 


Q ss_pred             HHHhhcCeEEEEeC-CeEEEecCCh
Q psy11928        133 LIRDTECTLWVIEN-QTIEEIDGDF  156 (184)
Q Consensus       133 ~~~~~~~~i~~l~~-g~i~~~~~~~  156 (184)
                      .+...+|++++|++ |+++. .|+.
T Consensus      1082 ~i~~~~D~vllL~~gG~~v~-~G~~ 1105 (1470)
T PLN03140       1082 DIFEAFDELLLMKRGGQVIY-SGPL 1105 (1470)
T ss_pred             HHHHhCCEEEEEcCCCEEEE-ECCc
Confidence            46778999999986 78764 4543

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=2.3e-24  Score=163.16  Aligned_cols=157  Identities=24%  Similarity=0.355  Sum_probs=127.4

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCC--CCCCccCCHHHHHH--------HhcC---CCHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSG--EHLTAEETPAEYLQ--------RLFN---LPYEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~--~~l~~~~~~~~~~~--------~~~~---~~~~~~~   55 (184)
                      +|+|-.+|++|++.+.+             +..||.-||.|.  +.+++++|+.-...        ...+   ..+.++.
T Consensus        50 ~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~rid  129 (249)
T COG4674          50 VITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRID  129 (249)
T ss_pred             eecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHH
Confidence            68999999999998764             346899999985  45565555321110        0111   1235788


Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL  133 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~  133 (184)
                      ++|...|+.+..+ +..+.||.||||++.|+..++++|++|++|||++|+.-....+.-+++++.  +.+|++|.||+.|
T Consensus       130 e~La~igL~~~~~-~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~F  208 (249)
T COG4674         130 ELLATIGLGDERD-RLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGF  208 (249)
T ss_pred             HHHHHcccchhhh-hhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHH
Confidence            9999999987665 588999999999999999999999999999999999999999999999876  4699999999999


Q ss_pred             HHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928        134 IRDTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      +..++++|-+|+.|.+.. .|+.++..
T Consensus       209 vr~~A~~VTVlh~G~VL~-EGsld~v~  234 (249)
T COG4674         209 VREIADKVTVLHEGSVLA-EGSLDEVQ  234 (249)
T ss_pred             HHHhhheeEEEeccceee-cccHHHhh
Confidence            999999999999999864 67765543

>PTZ00243 ABC transporter; Provisional

Probab=99.91  E-value=9.7e-24  Score=202.37  Aligned_cols=151  Identities=20%  Similarity=0.245  Sum_probs=113.9

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHH---------HHHHhhC--CCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKA---------RKQLGTF--GLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~   70 (184)
                      .|+|+++|++|+|...  ..|||++|++.  +. ..|+.+++........++.         .+.++.+  |+..... +
T Consensus       705 ~i~G~~~~~~G~i~~~--~~i~yv~Q~~~--l~-~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~-~  778 (1560)
T PTZ00243        705 SLLSQFEISEGRVWAE--RSIAYVPQQAW--IM-NATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG-E  778 (1560)
T ss_pred             HHhcCCCCCCcEEEEC--CeEEEEeCCCc--cC-CCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc-C
Confidence            5789999999999863  57999999974  32 3466676643221112222         2234444  5544444 4


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HH-h-cCcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA-IN-E-YKGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~-~-~~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      +..+|||||||||+||||++.+|+++||||||++||+.+...+.+. +. . .++|+|+|||+++.+. .||++++|++|
T Consensus       779 ~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G  857 (1560)
T PTZ00243        779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDG  857 (1560)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence            7899999999999999999999999999999999999988877653 32 2 2689999999999996 59999999999


Q ss_pred             eEEEecCChhHHH
Q psy11928        148 TIEEIDGDFDDYR  160 (184)
Q Consensus       148 ~i~~~~~~~~~~~  160 (184)
                      ++.. .|+++++.
T Consensus       858 ~i~~-~G~~~~l~  869 (1560)
T PTZ00243        858 RVEF-SGSSADFM  869 (1560)
T ss_pred             EEEE-ecCHHHHH
Confidence            9964 66666553

>PLN03140 ABC transporter G family member; Provisional

Probab=99.91  E-value=1.3e-23  Score=199.88  Aligned_cols=155  Identities=21%  Similarity=0.245  Sum_probs=118.3

Q ss_pred             cccCcccCC---ceeEEecC--------CeEEEEEecCCC--CCCCccCCHHHHHHHhcC----------CCH-H-----
Q psy11928          2 YAHCDLQPQ---QGELKKNH--------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFN----------LPY-E-----   52 (184)
Q Consensus         2 ~~~G~~~p~---~G~i~~~~--------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~----------~~~-~-----   52 (184)
                      +|+|.++|+   +|+|.+++        ++.++|++|+..  +.+|+.+|+... .....          ... +     
T Consensus       210 ~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~-a~~~~~~~~~~~~~~~~~~ek~~~~  288 (1470)
T PLN03140        210 ALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS-ARCQGVGTRYDLLSELARREKDAGI  288 (1470)
T ss_pred             HHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHH-HHhcCCCCcccchhhcCHHHHhccC
Confidence            689999998   99998764        356999999863  344555543211 11110          000 0     


Q ss_pred             ----------------------HHHHHHhhCCCCcccc----cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q psy11928         53 ----------------------KARKQLGTFGLAGHAH----TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD  106 (184)
Q Consensus        53 ----------------------~~~~~l~~~~l~~~~~----~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD  106 (184)
                                            .+..+++.+|+++..+    ++.++.|||||||||+||++++.+|++++|||||+|||
T Consensus       289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLD  368 (1470)
T PLN03140        289 FPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD  368 (1470)
T ss_pred             CCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCcc
Confidence                                  1345788999975332    34678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----CcEEEEEecCH-HHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        107 IESIDALADAINEY----KGGVIIVSHDE-RLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       107 ~~~~~~l~~~l~~~----~~tiiivsHd~-~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      +.+...+.+.|++.    +.|+|+++|+. .++..++|++++|++|+++. .|+.++
T Consensus       369 s~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy-~G~~~~  424 (1470)
T PLN03140        369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY-QGPRDH  424 (1470)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEE-eCCHHH
Confidence            99999999998764    67999999996 68888999999999999974 555544

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.91  E-value=1.4e-23  Score=163.77  Aligned_cols=161  Identities=22%  Similarity=0.230  Sum_probs=125.2

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecC---CCCCCCccCCHHHHHHHhcCCCH----HHHHHHHhhCCCCcccccccccC
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQH---SGEHLTAEETPAEYLQRLFNLPY----EKARKQLGTFGLAGHAHTIKMKD   74 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~---~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~   74 (184)
                      +|+|.++|++|+|..+++-  +++..-   ..+.+|+.+|+... ....+++.    ++++++.+.-.|.++.+ .|++.
T Consensus        72 liaGi~~Pt~G~v~v~G~v--~~li~lg~Gf~pelTGreNi~l~-~~~~G~~~~ei~~~~~eIieFaELG~fi~-~Pvkt  147 (249)
T COG1134          72 LIAGIYKPTSGKVKVTGKV--APLIELGAGFDPELTGRENIYLR-GLILGLTRKEIDEKVDEIIEFAELGDFID-QPVKT  147 (249)
T ss_pred             HHhCccCCCCceEEEcceE--ehhhhcccCCCcccchHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHhh-Cchhh
Confidence            6899999999999887643  222211   11457787876433 33344443    34667777778887776 59999


Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928         75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus        75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      +|.||+-|++++.|...+|+|||+||-.+.-|+.=++...+.+.++   +.|||+||||++.+.++||+++++++|+++.
T Consensus       148 YSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~  227 (249)
T COG1134         148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM  227 (249)
T ss_pred             ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence            9999999999999999999999999999999998877777666554   5899999999999999999999999999975


Q ss_pred             ecCChhHHHHHHHHHh
Q psy11928        152 IDGDFDDYRKELLEAL  167 (184)
Q Consensus       152 ~~~~~~~~~~~~~~~~  167 (184)
                       .|++++..+.+.+..
T Consensus       228 -~G~~~~vi~~Y~~~~  242 (249)
T COG1134         228 -EGSPEEVIPAYEEDL  242 (249)
T ss_pred             -cCCHHHHHHHHHHhh
Confidence             677766555544443

>KOG0927|consensus

Probab=99.90  E-value=1.2e-23  Score=178.79  Aligned_cols=110  Identities=35%  Similarity=0.577  Sum_probs=100.6

Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCc-EEEEEecCHH
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG-GVIIVSHDER  132 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-tiiivsHd~~  132 (184)
                      +..+|..+|+......+++.+||||++.|++|||+|..+|++|||||||||||+.++.||.++|.++.. +++++||+.+
T Consensus       201 ~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QD  280 (614)
T KOG0927|consen  201 AAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQD  280 (614)
T ss_pred             HHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchh
Confidence            445788888876666678999999999999999999999999999999999999999999999999987 8999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEEecCChhHHHHHH
Q psy11928        133 LIRDTECTLWVIENQTIEEIDGDFDDYRKEL  163 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~~  163 (184)
                      ++..+|+.|+-++.++.+.|.|+++.|....
T Consensus       281 fln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr  311 (614)
T KOG0927|consen  281 FLNGVCTNIIHLDNKKLIYYEGNYDQYVKTR  311 (614)
T ss_pred             hhhhHhhhhheecccceeeecCCHHHHhhHH
Confidence            9999999999999999888999999886543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.90  E-value=2.4e-23  Score=177.81  Aligned_cols=150  Identities=19%  Similarity=0.262  Sum_probs=119.2

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCC-CCCCccCCHHHHHHH-----hc---CCC----HHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSG-EHLTAEETPAEYLQR-----LF---NLP----YEKARK   56 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~~~~~~~~~-----~~---~~~----~~~~~~   56 (184)
                      .|.|..++++|+|.+++            +..|+|+|.+.. ..+....++.+++..     ..   -.+    .+.+.+
T Consensus       304 ~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~  383 (500)
T COG1129         304 ALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAER  383 (500)
T ss_pred             HHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHH
Confidence            46788889999999875            235999998764 334445555544321     11   011    123567


Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL  133 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~  133 (184)
                      +.+.+++...-.+.++.+||||.||||.|||.|..+|++|||||||.|.|.-++.++.++++++   |.+||++|-++.+
T Consensus       384 ~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpE  463 (500)
T COG1129         384 YIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPE  463 (500)
T ss_pred             HHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            7888888543333589999999999999999999999999999999999999999999999765   7899999999999


Q ss_pred             HHhhcCeEEEEeCCeEEE
Q psy11928        134 IRDTECTLWVIENQTIEE  151 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~  151 (184)
                      +..+||||++|.+|+++.
T Consensus       464 ll~~~DRIlVm~~Gri~~  481 (500)
T COG1129         464 LLGLSDRILVMREGRIVG  481 (500)
T ss_pred             HHhhCCEEEEEECCEEEE
Confidence            999999999999999964

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.89  E-value=1.6e-22  Score=162.14  Aligned_cols=99  Identities=21%  Similarity=0.327  Sum_probs=86.6

Q ss_pred             HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcC---CCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928         52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA---PDVIILDEPTNNLDIESIDALADAINEY---KGGVI  125 (184)
Q Consensus        52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tii  125 (184)
                      .++.++++.+|+......+++.+|||||+||+.||++|+.+   |+++||||||+|||+..+..+.+.++++   +.|||
T Consensus       147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvI  226 (261)
T cd03271         147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVV  226 (261)
T ss_pred             HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            45667899999976323458999999999999999999996   7999999999999999999999988764   68999


Q ss_pred             EEecCHHHHHhhcCeEEEE------eCCeEEE
Q psy11928        126 IVSHDERLIRDTECTLWVI------ENQTIEE  151 (184)
Q Consensus       126 ivsHd~~~~~~~~~~i~~l------~~g~i~~  151 (184)
                      +|||+++++. .||+++.|      ++|+++.
T Consensus       227 iitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~  257 (261)
T cd03271         227 VIEHNLDVIK-CADWIIDLGPEGGDGGGQVVA  257 (261)
T ss_pred             EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE
Confidence            9999999996 69999999      7888865

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=5.7e-24  Score=158.03  Aligned_cols=143  Identities=24%  Similarity=0.326  Sum_probs=113.5

Q ss_pred             ccCcccCCceeEEec-------------------CCeEEEEEecCCC--CCCCccCCHHHHHHHhcCCC----HHHHHHH
Q psy11928          3 AHCDLQPQQGELKKN-------------------HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQ   57 (184)
Q Consensus         3 ~~G~~~p~~G~i~~~-------------------~~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~   57 (184)
                      |.|.+.||+|+|.+.                   .++.||||+|...  +....-+-+.+.+.. .+.+    ..++..+
T Consensus        57 LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~L  135 (235)
T COG4778          57 LYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADL  135 (235)
T ss_pred             HHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHH
Confidence            568889999999753                   1457999999753  222222222232222 2333    2457789


Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI  134 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~  134 (184)
                      +.++++.+.++...|..+||||||||.|||.++.+.+||||||||++||..++..+.++|.+.   |.++|=+-||.+.-
T Consensus       136 l~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevr  215 (235)
T COG4778         136 LTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVR  215 (235)
T ss_pred             HHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHH
Confidence            999999988888899999999999999999999999999999999999999999999999653   67899999999999


Q ss_pred             HhhcCeEEEEeC
Q psy11928        135 RDTECTLWVIEN  146 (184)
Q Consensus       135 ~~~~~~i~~l~~  146 (184)
                      +..|||++.+..
T Consensus       216 e~vadR~~~~~~  227 (235)
T COG4778         216 EAVADRLLDVSA  227 (235)
T ss_pred             HHHhhheeeccc
Confidence            999999986643

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.89  E-value=6.8e-23  Score=173.22  Aligned_cols=155  Identities=27%  Similarity=0.353  Sum_probs=117.2

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHH---------HHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKAR---------KQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---------~~l~~   60 (184)
                      .|.|..+|.+|.|+.++           .++|||+||+-.  +. .-|+.+++.... ..+.+++-         +++-+
T Consensus       381 ~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe--LF-~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~  457 (580)
T COG4618         381 LLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE--LF-DGTIAENIARFGEEADPEKVIEAARLAGVHELILR  457 (580)
T ss_pred             HHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce--ec-CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHh
Confidence            47899999999999764           468999999873  32 336778877654 33333332         33333


Q ss_pred             C--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecCHHHHH
Q psy11928         61 F--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN---EYKGGVIIVSHDERLIR  135 (184)
Q Consensus        61 ~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~  135 (184)
                      +  |.+...-. --..||||||||++|||||..+|.+++||||-++||.+....+.+.|.   +.|.|+|+|||.++.+.
T Consensus       458 lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~  536 (580)
T COG4618         458 LPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA  536 (580)
T ss_pred             CcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh
Confidence            2  22222222 346899999999999999999999999999999999999999988875   45789999999999996


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHHHHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDYRKE  162 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~~~~  162 (184)
                       .+|+|++|++|++..| |+.++...+
T Consensus       537 -~~Dkilvl~~G~~~~F-G~r~eVLa~  561 (580)
T COG4618         537 -SVDKILVLQDGRIAAF-GPREEVLAK  561 (580)
T ss_pred             -hcceeeeecCChHHhc-CCHHHHHHH
Confidence             5899999999999654 554444433

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=5.8e-23  Score=154.48  Aligned_cols=132  Identities=30%  Similarity=0.368  Sum_probs=101.7

Q ss_pred             cccCcccCCceeEEecCC----------eEEEEEecCCC--CCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNHR----------LRIGRFDQHSG--EHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~----------~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~   68 (184)
                      +|+|+..|++|+|.++..          +.+-|+--.+.  ..+|+.+|+.++ ...++ .+...+.+.++.+|+.+..+
T Consensus        47 ilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~-~~~~~~~~~~~i~~Al~~vgL~g~~d  125 (209)
T COG4133          47 ILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFW-QRFHGSGNAATIWEALAQVGLAGLED  125 (209)
T ss_pred             HHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHH-HHHhCCCchhhHHHHHHHcCcccccc
Confidence            689999999999998631          12233332322  334555553322 22223 34566888999999998776


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR  135 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~  135 (184)
                       .++.+||.|||+||+|||.++..+++.||||||++||..++..+..++...   |+.||.+||..-.+.
T Consensus       126 -lp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         126 -LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             -cchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence             599999999999999999999999999999999999999999999999764   689999999976664

>KOG0054|consensus

Probab=99.87  E-value=1.1e-21  Score=182.93  Aligned_cols=153  Identities=21%  Similarity=0.290  Sum_probs=120.1

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCccccc----------cc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHT----------IK   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~   71 (184)
                      .|.|..+..+|++.+.+.  ++|+||.|.  + -.-|+.+++......++++.++.++.-.|..+..-          .+
T Consensus       566 AiLGEm~~~sG~v~v~gs--iaYv~Q~pW--I-~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGEr  640 (1381)
T KOG0054|consen  566 AILGEMPKLSGSVAVNGS--VAYVPQQPW--I-QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGER  640 (1381)
T ss_pred             HHhcCcccccceEEEcCe--EEEeccccH--h-hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCC
Confidence            478999999999988764  999999984  2 23456676665555567777766655555432211          25


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAINEY--KGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      --+||||||||++||||+.+++||+|||-|+|++|...-+.+. +.++.+  ++|+|+|||.+.++.+ +|.|++|++|+
T Consensus       641 GinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~  719 (1381)
T KOG0054|consen  641 GINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGK  719 (1381)
T ss_pred             ccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCe
Confidence            6789999999999999999999999999999999998766655 455443  5899999999999975 89999999999


Q ss_pred             EEEecCChhHHHH
Q psy11928        149 IEEIDGDFDDYRK  161 (184)
Q Consensus       149 i~~~~~~~~~~~~  161 (184)
                      |.+ .|++++..+
T Consensus       720 I~~-~Gty~el~~  731 (1381)
T KOG0054|consen  720 IVE-SGTYEELLK  731 (1381)
T ss_pred             Eec-ccCHHHHHh
Confidence            975 788887664

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.87  E-value=1.6e-21  Score=150.67  Aligned_cols=110  Identities=20%  Similarity=0.276  Sum_probs=87.0

Q ss_pred             CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHh----cCCC
Q psy11928         19 RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTL----NAPD   94 (184)
Q Consensus        19 ~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~----~~p~   94 (184)
                      ...+|++||++...+ .         .   ...+++.++++.   .+..+ +++.+||||||||++||++++    .+|+
T Consensus        75 ~~~v~~vfq~~~~~~-~---------~---~~~~~~~~~l~~---~~~~~-~~~~~LS~G~kqrl~la~~l~~~~~~~~~  137 (197)
T cd03278          75 FAEVTLTFDNSDGRY-S---------I---ISQGDVSEIIEA---PGKKV-QRLSLLSGGEKALTALALLFAIFRVRPSP  137 (197)
T ss_pred             eEEEEEEEEcCCCce-e---------E---EehhhHHHHHhC---CCccc-cchhhcCHHHHHHHHHHHHHHHhccCCCC
Confidence            357999999985221 0         0   013456667766   33333 579999999999999999997    4679


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         95 VIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        95 illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      ++++||||++||+.++..+.+.+.+.  +.|||++||+++++. .||+++.+..
T Consensus       138 illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~  190 (197)
T cd03278         138 FCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM  190 (197)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence            99999999999999999999999875  579999999999875 7999987753

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=3e-22  Score=146.19  Aligned_cols=132  Identities=30%  Similarity=0.340  Sum_probs=98.2

Q ss_pred             ceeEEecC---------CeEEEEEecCCC--CCCCccCCHHHHHHH-hcC-CCHHHHHHHHhhCCCCcccccccccCCCh
Q psy11928         11 QGELKKNH---------RLRIGRFDQHSG--EHLTAEETPAEYLQR-LFN-LPYEKARKQLGTFGLAGHAHTIKMKDLSG   77 (184)
Q Consensus        11 ~G~i~~~~---------~~~ig~v~q~~~--~~l~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSg   77 (184)
                      +|++.++.         ++++|++||++-  +++++..|+...+.. ..+ ..+..+...+++.|++...+ +.|.+|||
T Consensus        59 ~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~-~dP~tlSG  137 (213)
T COG4136          59 TGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFH-QDPATLSG  137 (213)
T ss_pred             eeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhh-cChhhcCc
Confidence            57776542         568999999974  445555553221111 111 11234667899999998776 48999999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l----~~~~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      |||.||++.|+|+..|+.++||||||.||..-+.++.+.+    ++.+...|+||||...+. ...||+.+
T Consensus       138 GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~  207 (213)
T COG4136         138 GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM  207 (213)
T ss_pred             chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence            9999999999999999999999999999998877766655    456889999999999987 45565543

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.86  E-value=3.1e-21  Score=150.62  Aligned_cols=90  Identities=23%  Similarity=0.197  Sum_probs=77.9

Q ss_pred             hhCCCCcccccccccCCChhHHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928         59 GTFGLAGHAHTIKMKDLSGGQKARVALAELTLN----------APDVIILDEPTNNLDIESIDALADAINEY---KGGVI  125 (184)
Q Consensus        59 ~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~----------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tii  125 (184)
                      ...++....+ +++.+||+||+||++||||++.          +|+++|+||||++||+.++..+.+.+.++   +.|||
T Consensus       109 ~~g~l~~~l~-~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii  187 (213)
T cd03279         109 PQGEFDRFLA-RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVG  187 (213)
T ss_pred             hhcchHHHhc-CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            4444555444 5789999999999999999985          57899999999999999999999888765   57999


Q ss_pred             EEecCHHHHHhhcCeEEEEeCCeE
Q psy11928        126 IVSHDERLIRDTECTLWVIENQTI  149 (184)
Q Consensus       126 ivsHd~~~~~~~~~~i~~l~~g~i  149 (184)
                      +|||+++++..+|++++++++|.+
T Consensus       188 ~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         188 VISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             EEECchHHHHhhCcEEEEEecCCC
Confidence            999999999999999999998854

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0061|consensus

Probab=99.86  E-value=3.2e-21  Score=170.91  Aligned_cols=151  Identities=26%  Similarity=0.290  Sum_probs=117.0

Q ss_pred             cccCcccC---CceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHH-----hc-CCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQP---QQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQR-----LF-NLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p---~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~-----~~-~~~----~~~~~~~l~~   60 (184)
                      +|+|...+   .+|+|.+++        +...|||.|+..  +.+..|+.|.+..     .. ..+    .++++++++.
T Consensus        75 ~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~--l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~  152 (613)
T KOG0061|consen   75 ALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDV--LLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISE  152 (613)
T ss_pred             HHhccccCCCcceEEEEECCccCchhhhhheeEEEccccc--ccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            46777754   789999886        346999999863  3444455444321     11 112    2468889999


Q ss_pred             CCCCccccccccc-----CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH-
Q psy11928         61 FGLAGHAHTIKMK-----DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE-  131 (184)
Q Consensus        61 ~~l~~~~~~~~~~-----~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~-  131 (184)
                      +|+..-.+ ..++     .+|||||+||+||.-++.+|.||++||||+|||..+...+.+.|++.   |+|||++=|.+ 
T Consensus       153 LgL~~~~~-t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs  231 (613)
T KOG0061|consen  153 LGLEKCAD-TLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS  231 (613)
T ss_pred             cCChhhcc-ceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            99985554 4665     59999999999999999999999999999999999999999988754   78999999996 


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCCh
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDF  156 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~  156 (184)
                      ..+.+.-|++++|.+|+++ |.|+.
T Consensus       232 s~lf~lFD~l~lLs~G~~v-y~G~~  255 (613)
T KOG0061|consen  232 SELFELFDKLLLLSEGEVV-YSGSP  255 (613)
T ss_pred             HHHHHHHhHhhhhcCCcEE-EecCH
Confidence            4566778999999999886 45554

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=9.1e-20  Score=141.18  Aligned_cols=157  Identities=25%  Similarity=0.353  Sum_probs=119.5

Q ss_pred             cccCcc--cCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc----CC------CHHHHHHH
Q psy11928          2 YAHCDL--QPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF----NL------PYEKARKQ   57 (184)
Q Consensus         2 ~~~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~~------~~~~~~~~   57 (184)
                      +|+|.-  ++++|+|.+++            +..|...||.|. .+. .-++.+++....    +.      ...++.+.
T Consensus        49 ~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~-ei~-GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~  126 (251)
T COG0396          49 TIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPV-EIP-GVTNSDFLRAAMNARRGARGILPEFIKELKEK  126 (251)
T ss_pred             HHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCc-cCC-CeeHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence            345544  67899998764            446888899985 333 334455554221    11      12456778


Q ss_pred             HhhCCCCccccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH
Q psy11928         58 LGTFGLAGHAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL  133 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~  133 (184)
                      ++.+++++...+|.++ .+|||||+|..|+.+++.+|++.|||||-||||..+.+.+.+.++++   +.++++|||....
T Consensus       127 ~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rl  206 (251)
T COG0396         127 AELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL  206 (251)
T ss_pred             HHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence            9999998754455665 89999999999999999999999999999999999999888887665   6799999999999


Q ss_pred             HHhhc-CeEEEEeCCeEEEecCChhHHHHH
Q psy11928        134 IRDTE-CTLWVIENQTIEEIDGDFDDYRKE  162 (184)
Q Consensus       134 ~~~~~-~~i~~l~~g~i~~~~~~~~~~~~~  162 (184)
                      +..+. |++.+|-+|+|+. .|.+ ++.++
T Consensus       207 l~~i~pD~vhvl~~GrIv~-sG~~-el~~~  234 (251)
T COG0396         207 LDYIKPDKVHVLYDGRIVK-SGDP-ELAEE  234 (251)
T ss_pred             HhhcCCCEEEEEECCEEEe-cCCH-HHHHH
Confidence            98764 8999999999986 5555 44333

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.84  E-value=1.5e-20  Score=157.42  Aligned_cols=140  Identities=23%  Similarity=0.320  Sum_probs=111.7

Q ss_pred             CcccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcC--C-CHHHHHHHHhhCCCCcccccccccCCCh
Q psy11928          1 MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN--L-PYEKARKQLGTFGLAGHAHTIKMKDLSG   77 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~l~~~~~~~~~~~LSg   77 (184)
                      ++|+|.++|++|.   ....+++|=||--.+.  ...++.+++....+  . +..-..++++.++++.... +++.+|||
T Consensus       385 k~LAG~ikPdeg~---~~~~~vSyKPQyI~~~--~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-~~v~~LSG  458 (591)
T COG1245         385 KLLAGVIKPDEGS---EEDLKVSYKPQYISPD--YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-RPVDELSG  458 (591)
T ss_pred             HHHhccccCCCCC---CccceEeecceeecCC--CCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-cccccCCc
Confidence            4689999999998   4466899999965432  23456665543221  1 1122356888999987665 58999999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      ||.|||+||.+|+.++|+++||||++.||.+.+-.+-+.|+++    .+|.++|.||+..+..++||+++++.
T Consensus       459 GELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G  531 (591)
T COG1245         459 GELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG  531 (591)
T ss_pred             hhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence            9999999999999999999999999999999987777777654    68999999999999999999998864

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.83  E-value=2.6e-20  Score=170.37  Aligned_cols=101  Identities=26%  Similarity=0.320  Sum_probs=86.4

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~  131 (184)
                      .+..+|+.....++++.+|||||+|||.||++|+.+|  +++||||||+|||+..+..+.+.|+++   |.|||+||||+
T Consensus       470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~  549 (924)
T TIGR00630       470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE  549 (924)
T ss_pred             hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4677888654234689999999999999999999986  899999999999999999999988754   67999999999


Q ss_pred             HHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVI------ENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l------~~g~i~~~~~~~~~~  159 (184)
                      +++. .||++++|      ++|+++. .++.+++
T Consensus       550 ~~i~-~aD~vi~LgpgaG~~~G~Iv~-~g~~~el  581 (924)
T TIGR00630       550 ETIR-AADYVIDIGPGAGIHGGEVVA-SGTPEEI  581 (924)
T ss_pred             HHHh-hCCEEEEecccccCCCCEEee-ccCHHHH
Confidence            9987 89999999      8888864 5665554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.83  E-value=2.7e-20  Score=170.63  Aligned_cols=101  Identities=26%  Similarity=0.327  Sum_probs=87.5

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~  131 (184)
                      .++.+|+.....++++.+|||||+|||.||++|+.+|  +++||||||+|||+..+..+.+.|+++   |.|||+||||+
T Consensus       472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~  551 (943)
T PRK00349        472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE  551 (943)
T ss_pred             HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            5788899754234689999999999999999999997  999999999999999999999988654   78999999999


Q ss_pred             HHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVI------ENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l------~~g~i~~~~~~~~~~  159 (184)
                      +++. .||++++|      ++|+++. .++++++
T Consensus       552 ~~i~-~aD~vi~LgpgaG~~~G~iv~-~g~~~e~  583 (943)
T PRK00349        552 DTIR-AADYIVDIGPGAGVHGGEVVA-SGTPEEI  583 (943)
T ss_pred             HHHH-hCCEEEEeccccCCCCCEEee-ccCHHHH
Confidence            9987 59999999      8888864 6666655

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.83  E-value=4.8e-20  Score=143.15  Aligned_cols=131  Identities=27%  Similarity=0.321  Sum_probs=95.1

Q ss_pred             ccCcccCCceeEEe--------cCCeEEEEEecCC-CCCCCccC--CHHHHHHHhcCCCHHHHHHHHhhCCCCccccccc
Q psy11928          3 AHCDLQPQQGELKK--------NHRLRIGRFDQHS-GEHLTAEE--TPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIK   71 (184)
Q Consensus         3 ~~G~~~p~~G~i~~--------~~~~~ig~v~q~~-~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~   71 (184)
                      ++|...|++|.+..        .....++++||++ ...++...  ++.+.+..   ....++.+.+         + ++
T Consensus        46 l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~---~~~~~~~~~~---------~-~~  112 (204)
T cd03240          46 LTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF---CHQGESNWPL---------L-DM  112 (204)
T ss_pred             HcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceee---echHHHHHHH---------h-cC
Confidence            46888888876531        1245799999987 33333222  33322211   1123333333         2 47


Q ss_pred             ccCCChhHHHH------HHHHHHHhcCCCEEEeeCCCCCCCHHHHH-HHHHHHHhc----CcEEEEEecCHHHHHhhcCe
Q psy11928         72 MKDLSGGQKAR------VALAELTLNAPDVIILDEPTNNLDIESID-ALADAINEY----KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        72 ~~~LSgG~kqr------v~laral~~~p~illlDEPt~~LD~~~~~-~l~~~l~~~----~~tiiivsHd~~~~~~~~~~  140 (184)
                      +++||+||+||      ++||++++.+|+++++||||++||+..+. .+.+.+.+.    +.|||++||+++++. .||+
T Consensus       113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~  191 (204)
T cd03240         113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADH  191 (204)
T ss_pred             ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCE
Confidence            89999999996      78999999999999999999999999999 999988764    569999999999875 6999


Q ss_pred             EEEEeCC
Q psy11928        141 LWVIENQ  147 (184)
Q Consensus       141 i~~l~~g  147 (184)
                      ++.+++.
T Consensus       192 i~~l~~~  198 (204)
T cd03240         192 IYRVEKD  198 (204)
T ss_pred             EEEEeeC
Confidence            9988653

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0066|consensus

Probab=99.83  E-value=1.8e-21  Score=162.81  Aligned_cols=110  Identities=28%  Similarity=0.525  Sum_probs=101.6

Q ss_pred             HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCH
Q psy11928         52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE  131 (184)
Q Consensus        52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~  131 (184)
                      .+++.+|..+|++....+++...+|||.|.||+|||||...|-+|.||||||+||..+..|+-++|.-+.+|++|||||.
T Consensus       390 arARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ  469 (807)
T KOG0066|consen  390 ARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ  469 (807)
T ss_pred             hHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence            45678899999998887889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        132 RLIRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      .|+..+|+.|+.+++.++..|.|++.-+.+
T Consensus       470 gFLD~VCtdIIHLD~qkLhyYrGNY~~FKK  499 (807)
T KOG0066|consen  470 GFLDSVCTDIIHLDNQKLHYYRGNYTLFKK  499 (807)
T ss_pred             chHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence            999999999999999998878898765433

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.82  E-value=2.4e-19  Score=164.42  Aligned_cols=106  Identities=25%  Similarity=0.350  Sum_probs=90.3

Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVII  126 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii  126 (184)
                      +..+.++.+|+......+++.+|||||+||+.||++|+.+|   +++||||||+|||+..+..+.+.|.++   +.|||+
T Consensus       809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi  888 (943)
T PRK00349        809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV  888 (943)
T ss_pred             HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            34578899999753234589999999999999999999999   999999999999999999999988764   679999


Q ss_pred             EecCHHHHHhhcCeEEEE------eCCeEEEecCChhHHH
Q psy11928        127 VSHDERLIRDTECTLWVI------ENQTIEEIDGDFDDYR  160 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~~  160 (184)
                      |||+++++. .||+++.|      ++|+++. .|+.+++.
T Consensus       889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~-~Gt~~el~  926 (943)
T PRK00349        889 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVA-TGTPEEVA  926 (943)
T ss_pred             EecCHHHHH-hCCEEEEecCCcCCCCCEEEE-eCCHHHHH
Confidence            999999996 69999999      6888875 56655443

>KOG0054|consensus

Probab=99.81  E-value=5.2e-20  Score=171.95  Aligned_cols=147  Identities=20%  Similarity=0.247  Sum_probs=111.5

Q ss_pred             ccCcccCCceeEEecC-----------CeEEEEEecCCCC-CCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCC------
Q psy11928          3 AHCDLQPQQGELKKNH-----------RLRIGRFDQHSGE-HLTAEETPAEYLQRLFNLPYEKARKQLGTFGLA------   64 (184)
Q Consensus         3 ~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------   64 (184)
                      |-.+..|.+|+|.+++           |.+++.+||+|.- .-|.+.|+ +.+.   ..+++++.+.|+..++.      
T Consensus      1186 LFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NL-DPf~---e~sD~~IW~ALe~~~Lk~~v~~~ 1261 (1381)
T KOG0054|consen 1186 LFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL-DPFD---EYSDDEIWEALERCQLKDVVSSL 1261 (1381)
T ss_pred             HHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccccc-Cccc---ccCHHHHHHHHHHhChHHHHhhC
Confidence            4567789999999874           6789999999851 11333342 1111   12344455555444432      


Q ss_pred             -----cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         65 -----GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        65 -----~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                           .... .--.++|-||||-++|||||+.+++||+|||.|++.|+.+-..+.+.|++.  +.|||.|-|.++-+.. 
T Consensus      1262 p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd- 1339 (1381)
T KOG0054|consen 1262 PGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD- 1339 (1381)
T ss_pred             CcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-
Confidence                 2221 134789999999999999999999999999999999999999999999764  5799999999999986 


Q ss_pred             cCeEEEEeCCeEEEecCC
Q psy11928        138 ECTLWVIENQTIEEIDGD  155 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~  155 (184)
                      ||||+||++|++++++.+
T Consensus      1340 ~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1340 SDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred             cCeEEEeeCCeEeecCCh
Confidence            899999999999986543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4.1e-20  Score=153.58  Aligned_cols=151  Identities=25%  Similarity=0.299  Sum_probs=107.4

Q ss_pred             ccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHHhhCC--------
Q psy11928          3 AHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQLGTFG--------   62 (184)
Q Consensus         3 ~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~--------   62 (184)
                      +...+.+.+|.|..++           ++.||.+||+.-  | ...++..++... ...+.+++....+...        
T Consensus       309 lfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtv--L-FNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l  385 (497)
T COG5265         309 LFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV--L-FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL  385 (497)
T ss_pred             HHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccce--e-hhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC
Confidence            3456789999998764           457999999852  2 123333333221 1112222222222221        


Q ss_pred             ---CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         63 ---LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        63 ---l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                         ++..-. .+--.|||||||||+|||+++.+|+|+++||.||+||..+.+++...|++.  +.|-+++.|.+.-+.. 
T Consensus       386 P~gy~t~Vg-erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-  463 (497)
T COG5265         386 PEGYDTGVG-ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-  463 (497)
T ss_pred             chhhhcccc-hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-
Confidence               111111 134569999999999999999999999999999999999999999999764  6799999999999975 


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +|.|+++++|+|++ .|.-.++
T Consensus       464 adeiivl~~g~i~e-rg~h~~l  484 (497)
T COG5265         464 ADEIIVLDNGRIVE-RGTHEEL  484 (497)
T ss_pred             CceEEEeeCCEEEe-cCcHHHH
Confidence            79999999999987 6665443

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.81  E-value=5.7e-19  Score=161.66  Aligned_cols=103  Identities=25%  Similarity=0.372  Sum_probs=87.8

Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhc---CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLN---APDVIILDEPTNNLDIESIDALADAINEY---KGGVII  126 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~---~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii  126 (184)
                      +..++++.+|+......+++.+|||||+||+.||++|+.   +|+++||||||+|||+..+..+.+.|.++   +.|||+
T Consensus       807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv  886 (924)
T TIGR00630       807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV  886 (924)
T ss_pred             HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            445678899997533345899999999999999999997   59999999999999999999999998765   679999


Q ss_pred             EecCHHHHHhhcCeEEEE------eCCeEEEecCChh
Q psy11928        127 VSHDERLIRDTECTLWVI------ENQTIEEIDGDFD  157 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~  157 (184)
                      +||+++++. .||++++|      ++|+++. .|+.+
T Consensus       887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~-~G~~~  921 (924)
T TIGR00630       887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIVA-SGTPE  921 (924)
T ss_pred             EeCCHHHHH-hCCEEEEecCCccCCCCEEEE-eCCHH
Confidence            999999996 69999999      6888874 45543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.80  E-value=3.8e-19  Score=142.05  Aligned_cols=94  Identities=22%  Similarity=0.323  Sum_probs=78.6

Q ss_pred             HHHHHHHHhhCCCCc-------------------ccccccccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCH
Q psy11928         51 YEKARKQLGTFGLAG-------------------HAHTIKMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDI  107 (184)
Q Consensus        51 ~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~  107 (184)
                      .+++.++++.+|+..                   ...+.++.+||+|||||++||++++    .+|+++|+||||++||+
T Consensus       124 ~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~  203 (251)
T cd03273         124 QQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDL  203 (251)
T ss_pred             HHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCH
Confidence            467788899999861                   1122478999999999999999998    57899999999999999


Q ss_pred             HHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928        108 ESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIE  145 (184)
Q Consensus       108 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~  145 (184)
                      ..+.++.+.+.+.  +.|+|++||+.+..+ .||+++-++
T Consensus       204 ~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~  242 (251)
T cd03273         204 SHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR  242 (251)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence            9999999999764  568999999966665 699987654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.80  E-value=7.4e-19  Score=167.86  Aligned_cols=102  Identities=24%  Similarity=0.343  Sum_probs=87.0

Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHh---cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTL---NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH  129 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~---~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH  129 (184)
                      +.++.+|+......+++.+|||||+||++||++|+   .+|+++||||||+|||+.++..+.+.|.++   +.|||+|||
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH  870 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH  870 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            47888999764223589999999999999999997   699999999999999999999999988654   679999999


Q ss_pred             CHHHHHhhcCeEEEEe------CCeEEEecCChhHH
Q psy11928        130 DERLIRDTECTLWVIE------NQTIEEIDGDFDDY  159 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~------~g~i~~~~~~~~~~  159 (184)
                      +++++ ..||++++|.      +|+++. .++++++
T Consensus       871 dl~~i-~~aDrVi~L~p~gg~~~G~iv~-~Gtpeel  904 (1809)
T PRK00635        871 NMHVV-KVADYVLELGPEGGNLGGYLLA-SCSPEEL  904 (1809)
T ss_pred             CHHHH-HhCCEEEEEccCCCCCCCEEEE-eCCHHHH
Confidence            99999 7899999996      577764 5665554

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=3.1e-19  Score=138.03  Aligned_cols=92  Identities=20%  Similarity=0.164  Sum_probs=77.2

Q ss_pred             HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-----C-
Q psy11928         52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEY-----K-  121 (184)
Q Consensus        52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----~-  121 (184)
                      ..+.++++.   ..... +++++||+|||||++||+|+    +.+|+++||||||++||+..+..+.+.|.+.     + 
T Consensus        91 ~~~~~~l~~---~~~~~-~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~  166 (198)
T cd03276          91 DMARSFLTS---NKAAV-RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR  166 (198)
T ss_pred             HHHHHHhcc---ccccC-CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence            456677766   43443 58999999999999999999    5899999999999999999999999888653     2 


Q ss_pred             cEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928        122 GGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus       122 ~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      .|||++||+++.+... |+|.++..++
T Consensus       167 ~~iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         167 QFIFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             EEEEEECCcccccccc-cceeEEEecC
Confidence            4899999999999875 8998887653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.79  E-value=1e-18  Score=147.66  Aligned_cols=150  Identities=23%  Similarity=0.286  Sum_probs=119.0

Q ss_pred             cccCcccCCceeEEecCC-------------eEEEEEecCCC-CCCCccCCHHHHHHHh-c--------C-CC----HHH
Q psy11928          2 YAHCDLQPQQGELKKNHR-------------LRIGRFDQHSG-EHLTAEETPAEYLQRL-F--------N-LP----YEK   53 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~-------------~~ig~v~q~~~-~~l~~~~~~~~~~~~~-~--------~-~~----~~~   53 (184)
                      .|+|+.+|.+|+|.+++.             ..+||+|.+.. ..+...+++.+++... +        + ..    ...
T Consensus       303 aisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~  382 (501)
T COG3845         303 AISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF  382 (501)
T ss_pred             HHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHH
Confidence            589999999999987642             36999999863 3344556665554321 1        1 11    133


Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecC
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHD  130 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd  130 (184)
                      +.++++.|++-..--..++.+||||.+||+-+||-|..+|++|++-+||.|||.-+.+.+.+.|.+   .|.+|+++|-|
T Consensus       383 a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d  462 (501)
T COG3845         383 ARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED  462 (501)
T ss_pred             HHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh
Confidence            567889998852222247899999999999999999999999999999999999999999988854   47899999999


Q ss_pred             HHHHHhhcCeEEEEeCCeEEE
Q psy11928        131 ERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      ++++..+||||.+|.+|+++.
T Consensus       463 LDEil~lsDrIaVi~~Gri~~  483 (501)
T COG3845         463 LDEILELSDRIAVIYEGRIVG  483 (501)
T ss_pred             HHHHHHhhheeeeeeCCceec
Confidence            999999999999999999864

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.79  E-value=7.5e-19  Score=167.83  Aligned_cols=101  Identities=26%  Similarity=0.321  Sum_probs=85.3

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~  131 (184)
                      .|..+|++....++++.+|||||+|||.||++|+.+|  ++++|||||+|||+..+..+.+.|+++   |.|||+||||+
T Consensus       459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~  538 (1809)
T PRK00635        459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE  538 (1809)
T ss_pred             HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence            4667888754224589999999999999999999999  899999999999999999999888754   67999999999


Q ss_pred             HHHHhhcCeEEEEe------CCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVIE------NQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l~------~g~i~~~~~~~~~~  159 (184)
                      +. ...||++++|.      +|+++. .++.+++
T Consensus       539 ~v-i~~aDrVi~L~pGag~~gG~Iv~-~G~~~ei  570 (1809)
T PRK00635        539 QM-ISLADRIIDIGPGAGIFGGEVLF-NGSPREF  570 (1809)
T ss_pred             HH-HHhCCEEEEEcCCcccCCCEEEE-ecCHHHH
Confidence            95 47899999996      667753 5666655

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=1.5e-18  Score=137.72  Aligned_cols=75  Identities=27%  Similarity=0.345  Sum_probs=65.3

Q ss_pred             ccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEE
Q psy11928         70 IKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      +++.+||||||||++|||+++.    +|+++|+||||++||+.++..+.+.+.+.  +.+||++||+.+ +..+||++++
T Consensus       154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~  232 (243)
T cd03272         154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYG  232 (243)
T ss_pred             ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEE
Confidence            4789999999999999999973    58999999999999999999999999876  457777777755 5679999988


Q ss_pred             Ee
Q psy11928        144 IE  145 (184)
Q Consensus       144 l~  145 (184)
                      +.
T Consensus       233 l~  234 (243)
T cd03272         233 VK  234 (243)
T ss_pred             EE
Confidence            75

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=1e-18  Score=139.41  Aligned_cols=96  Identities=25%  Similarity=0.283  Sum_probs=78.2

Q ss_pred             CHHHHHHHHhhCCCCccc---------------------ccccccCCChhHHHHHHHHHHHhcC----CCEEEeeCCCCC
Q psy11928         50 PYEKARKQLGTFGLAGHA---------------------HTIKMKDLSGGQKARVALAELTLNA----PDVIILDEPTNN  104 (184)
Q Consensus        50 ~~~~~~~~l~~~~l~~~~---------------------~~~~~~~LSgG~kqrv~laral~~~----p~illlDEPt~~  104 (184)
                      ..+.+.++++.+|+..+.                     .++++.+||+|||||++||++++.+    |+++|+||||++
T Consensus       110 s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~  189 (247)
T cd03275         110 SLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAA  189 (247)
T ss_pred             cHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEeccccc
Confidence            345566778888874220                     1124599999999999999999864    899999999999


Q ss_pred             CCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928        105 LDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus       105 LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      ||+..+..+.+.+.+.   +.+||+|||+.+++ ..||+++++..
T Consensus       190 LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~  233 (247)
T cd03275         190 LDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR  233 (247)
T ss_pred             CCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence            9999999999998875   56999999998876 57999987753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.78  E-value=5.3e-19  Score=138.06  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=76.1

Q ss_pred             HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEe
Q psy11928         55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVS  128 (184)
Q Consensus        55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivs  128 (184)
                      .++++.+++.+..+ +++.+||+|||||++||+|++.    +|+++++||||+|||+.++..+.+.+.+.  +.|+|++|
T Consensus       109 ~~~~~~~~L~~~~~-~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs  187 (212)
T cd03274         109 GEVEQIAQMPKKSW-KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS  187 (212)
T ss_pred             CcEEEeeccccccc-cchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence            34556777866554 4789999999999999999974    58999999999999999999999999876  46999999


Q ss_pred             cCHHHHHhhcCeEEEEeC
Q psy11928        129 HDERLIRDTECTLWVIEN  146 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~  146 (184)
                      |+. ++..+||++++|..
T Consensus       188 ~~~-~~~~~~d~v~~~~~  204 (212)
T cd03274         188 LRN-NMFELADRLVGIYK  204 (212)
T ss_pred             CcH-HHHHhCCEEEEEEe
Confidence            995 55678999998853

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.78  E-value=2.1e-19  Score=138.09  Aligned_cols=132  Identities=20%  Similarity=0.276  Sum_probs=106.4

Q ss_pred             eEEEEEecCCCCCCCccCCHHHH-HH------------HhcCCCHHHHHHHHhhCCCCcc--cccccccCCChhHHHHHH
Q psy11928         20 LRIGRFDQHSGEHLTAEETPAEY-LQ------------RLFNLPYEKARKQLGTFGLAGH--AHTIKMKDLSGGQKARVA   84 (184)
Q Consensus        20 ~~ig~v~q~~~~~l~~~~~~~~~-~~------------~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~kqrv~   84 (184)
                      +.|+++||+|..-+.+.+.+..- +.            ..++..+.++-++|.++|+.+.  ....++.+|-.||-|||+
T Consensus        89 ~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVM  168 (330)
T COG4170          89 HNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVM  168 (330)
T ss_pred             cchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeee
Confidence            46999999986445555443221 11            1122345678899999999753  334589999999999999


Q ss_pred             HHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928         85 LAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus        85 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      ||.|++++|++||.|||||++++.+..++..++.+.    +.||+++|||+..+.+.||++-++..|.-++
T Consensus       169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E  239 (330)
T COG4170         169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE  239 (330)
T ss_pred             eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence            999999999999999999999999999999998764    4689999999999999999999999887654

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.78  E-value=3.2e-20  Score=138.73  Aligned_cols=159  Identities=19%  Similarity=0.256  Sum_probs=116.6

Q ss_pred             ccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCH---HHHHHHHhhCCCCcccc
Q psy11928          3 AHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPY---EKARKQLGTFGLAGHAH   68 (184)
Q Consensus         3 ~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~   68 (184)
                      ++|++ |.+|+|.+.+           .++-+|+.|+..+.+  .+-++.|+... ...+   ..+.++...+++++...
T Consensus        45 lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f--~mpV~~YL~L~-qP~~~~a~~i~~i~~~L~l~DKL~  120 (248)
T COG4138          45 MAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPF--AMPVWHYLTLH-QPDKTRTELLNDVAGALALDDKLG  120 (248)
T ss_pred             HhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcc--hhhhhhhhhhc-CchHHHHHHHHHHHhhhcccchhh
Confidence            56764 7799998764           234578877654322  23344444332 2222   34677888999988776


Q ss_pred             cccccCCChhHHHHHHHHHHHhc-----C--CCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928         69 TIKMKDLSGGQKARVALAELTLN-----A--PDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~-----~--p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~  138 (184)
                       +.+++|||||-|||-+|...++     +  .+++|+|||.|+||+.....+-.++.++   |.+|||++||++--.+-+
T Consensus       121 -Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA  199 (248)
T COG4138         121 -RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA  199 (248)
T ss_pred             -hhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHH
Confidence             5899999999999999987643     3  3799999999999999888888777765   679999999999999999


Q ss_pred             CeEEEEeCCeEEEecCCh-hHHHHHHHHHh
Q psy11928        139 CTLWVIENQTIEEIDGDF-DDYRKELLEAL  167 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~-~~~~~~~~~~~  167 (184)
                      +++|+++.|++.. .|.. +....+++...
T Consensus       200 ~~~wLL~rG~l~~-~G~~~eVlt~~vL~q~  228 (248)
T COG4138         200 HRAWLLKRGKLLA-SGRREEVLTPPVLAQA  228 (248)
T ss_pred             HHHHHHhcCeEEe-ecchhhhcChHHHHHH
Confidence            9999999999865 4544 33445554444

>KOG0056|consensus

Probab=99.78  E-value=1.6e-19  Score=152.59  Aligned_cols=150  Identities=27%  Similarity=0.326  Sum_probs=106.2

Q ss_pred             CcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCCHHHHHHHH-------hhCCCCc
Q psy11928          5 CDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLPYEKARKQL-------GTFGLAG   65 (184)
Q Consensus         5 G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l-------~~~~l~~   65 (184)
                      ...+..+|.|.+++           |..||.|||+.-  + ...|+..++... ...+.+++.+..       ..+++.+
T Consensus       586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtv--L-FNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPe  662 (790)
T KOG0056|consen  586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTV--L-FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE  662 (790)
T ss_pred             HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcce--e-ecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCch
Confidence            34567889998875           567999999852  2 122332222111 111122221111       1134433


Q ss_pred             cccc---ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCe
Q psy11928         66 HAHT---IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        66 ~~~~---~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~  140 (184)
                      -...   .+--.|||||||||+|||+++..|.+++|||.||+||..+.+.+...+.+.  +.|-|+|.|.++-+-. +|.
T Consensus       663 gY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~  741 (790)
T KOG0056|consen  663 GYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADL  741 (790)
T ss_pred             hhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccE
Confidence            2221   134579999999999999999999999999999999999999999999886  5799999999999975 799


Q ss_pred             EEEEeCCeEEEecCChhHH
Q psy11928        141 LWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       141 i~~l~~g~i~~~~~~~~~~  159 (184)
                      |+++++|.|++ .|.-++.
T Consensus       742 ILvi~~G~IvE-rG~HeeL  759 (790)
T KOG0056|consen  742 ILVISNGRIVE-RGRHEEL  759 (790)
T ss_pred             EEEEeCCeEee-cCcHHHH
Confidence            99999999987 6665543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.74  E-value=1.4e-18  Score=126.07  Aligned_cols=93  Identities=37%  Similarity=0.466  Sum_probs=72.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|..+|++|+|.+++           +..++|++|++.  +....++.++.      ...++.++++.+++..... +
T Consensus        30 ~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~tv~~~~------~~~~~~~~l~~l~~~~~~~-~  100 (137)
T PF00005_consen   30 ALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQ--LFPGLTVRENE------SDERIEEVLKKLGLEDLLD-R  100 (137)
T ss_dssp             HHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHC--HHTTSBHHHHH------HHHHHHHHHHHTTHGGGTG-S
T ss_pred             eecccccccccccccccccccccccccccccccccccccc--ccccccccccc------ccccccccccccccccccc-c
Confidence            58999999999998753           346999999853  33444555551      1345777888888765333 2


Q ss_pred             cc----cCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q psy11928         71 KM----KDLSGGQKARVALAELTLNAPDVIILDEPTN  103 (184)
Q Consensus        71 ~~----~~LSgG~kqrv~laral~~~p~illlDEPt~  103 (184)
                      .+    .+||+|||||++||+|++.+|+++|||||||
T Consensus       101 ~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen  101 KIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             BGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            44    9999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.71  E-value=7.2e-17  Score=140.78  Aligned_cols=139  Identities=25%  Similarity=0.202  Sum_probs=106.6

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc---CCCHHHHHHHHhhCCCCccccc-----cccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLPYEKARKQLGTFGLAGHAHT-----IKMK   73 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~-----~~~~   73 (184)
                      .|+|+-+--+|+|.......+-|+||.|+  ++.. |+.+.+....   ..+.+++.+.|..+||.+...+     +=-.
T Consensus       438 aiaGLWP~g~G~I~~P~~~~~lflpQ~PY--~p~G-tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~  514 (604)
T COG4178         438 ALAGLWPWGSGRISMPADSALLFLPQRPY--LPQG-TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDR  514 (604)
T ss_pred             HHhccCccCCCceecCCCCceEEecCCCC--CCCc-cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhh
Confidence            57898888899998766667899999986  3333 6666554221   2456778888888888642210     0125


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE--YKGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        74 ~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      .||+|||||+++||.++++|++++|||-|++||+.+...+.+.+++  .+.|||-|+|....-.- .++.+-+
T Consensus       515 vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~-h~~~l~l  586 (604)
T COG4178         515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNF-HSRQLEL  586 (604)
T ss_pred             hcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHH-Hhhheee
Confidence            7999999999999999999999999999999999999999999988  57899999998777654 4444333

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.71  E-value=3.2e-17  Score=128.11  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             cccccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----C-cEEEEEecCHHHHHhhcC
Q psy11928         69 TIKMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEY----K-GGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~-~tiiivsHd~~~~~~~~~  139 (184)
                      ...+.+||+||||++.+++++    +.+|+++|+||||++||+..+..+.+.+.+.    + .|+|++|||+......|+
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~  200 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE  200 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence            347899999999998877654    5899999999999999999999999988653    3 379999999888777775


Q ss_pred             --eEEEEeCCe
Q psy11928        140 --TLWVIENQT  148 (184)
Q Consensus       140 --~i~~l~~g~  148 (184)
                        +++++.+|+
T Consensus       201 ~~~v~~l~~g~  211 (213)
T cd03277         201 KMTVLCVYNGP  211 (213)
T ss_pred             ceEEEEEecCc
Confidence              678888885

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.68  E-value=2.9e-16  Score=119.53  Aligned_cols=71  Identities=25%  Similarity=0.320  Sum_probs=63.7

Q ss_pred             CChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         75 LSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        75 LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      ||+||+||++||++++    .+|+++++|||+++||+..+..+.+.+.+.   +.++|++||+.+.+. .+|+++.+..
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence            9999999999999996    689999999999999999999998888654   479999999998875 6899987754

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.67  E-value=2.2e-16  Score=127.91  Aligned_cols=74  Identities=23%  Similarity=0.323  Sum_probs=65.7

Q ss_pred             cCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         73 KDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      .+|||||+||+++|++++.    +|+++++||||++||+..+..+.+.+.+.  +.|+|++||++... ..||+++.+.+
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~  247 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEK  247 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEE
Confidence            4599999999999987654    99999999999999999999999999765  56999999999865 68999988877


Q ss_pred             C
Q psy11928        147 Q  147 (184)
Q Consensus       147 g  147 (184)
                      |
T Consensus       248 ~  248 (276)
T cd03241         248 E  248 (276)
T ss_pred             e
Confidence            5

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.66  E-value=2.9e-16  Score=131.98  Aligned_cols=92  Identities=29%  Similarity=0.380  Sum_probs=82.5

Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecC
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHD  130 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd  130 (184)
                      ..++.++++|...++ +.+++|||||-||++||.+++.+++++++|||||.||+..+-...+.++++   +++||+|.||
T Consensus       194 ~devve~l~L~nvl~-r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHD  272 (591)
T COG1245         194 FDEVVERLGLENVLD-RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD  272 (591)
T ss_pred             HHHHHHHhcchhhhh-hhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEech
Confidence            556788999987765 589999999999999999999999999999999999999998887777765   5799999999


Q ss_pred             HHHHHhhcCeEEEEeC
Q psy11928        131 ERLIRDTECTLWVIEN  146 (184)
Q Consensus       131 ~~~~~~~~~~i~~l~~  146 (184)
                      +..+..++|-|.++..
T Consensus       273 LavLD~lsD~vhI~YG  288 (591)
T COG1245         273 LAVLDYLSDFVHILYG  288 (591)
T ss_pred             HHHHHHhhheeEEEec
Confidence            9999999999888754

>KOG0065|consensus

Probab=99.65  E-value=1.1e-16  Score=147.85  Aligned_cols=143  Identities=17%  Similarity=0.195  Sum_probs=104.7

Q ss_pred             CeEEEEEecCCC--CCCCccCCHHHH--HHHhcCCCH----HHHHHHHhhCCCCcccccccccC----CChhHHHHHHHH
Q psy11928         19 RLRIGRFDQHSG--EHLTAEETPAEY--LQRLFNLPY----EKARKQLGTFGLAGHAHTIKMKD----LSGGQKARVALA   86 (184)
Q Consensus        19 ~~~ig~v~q~~~--~~l~~~~~~~~~--~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~----LSgG~kqrv~la   86 (184)
                      ++.+|||.|+..  +.+|+++++..-  ++.....+.    +.++++++.+++++..+. -++.    ||.+||+|+.||
T Consensus       863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~da-iVG~~G~GLs~eQRKrLTIg  941 (1391)
T KOG0065|consen  863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADA-LVGLPGSGLSTEQRKRLTIG  941 (1391)
T ss_pred             ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhh-hccCCCCCCCHHHhceeeEE
Confidence            467999999864  455665554221  111122221    347888999999865543 4555    999999999999


Q ss_pred             HHHhcCC-CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH-HHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928         87 ELTLNAP-DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL-IRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus        87 ral~~~p-~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~-~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      --|+.+| .||+|||||||||.++...+++.+++.   |.||+-+-|.+.- +.+.-|++++|++|.-..|.|+..+-.+
T Consensus       942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen  942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred             EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence            9999999 999999999999999999998888764   8899999998653 4455689999987654346666544444


Q ss_pred             H
Q psy11928        162 E  162 (184)
Q Consensus       162 ~  162 (184)
                      +
T Consensus      1022 ~ 1022 (1391)
T KOG0065|consen 1022 K 1022 (1391)
T ss_pred             H
Confidence            3

>TIGR00618 sbcc exonuclease SbcC

Probab=99.65  E-value=5.1e-16  Score=145.36  Aligned_cols=79  Identities=20%  Similarity=0.218  Sum_probs=72.1

Q ss_pred             cccccCCChhHHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHH
Q psy11928         69 TIKMKDLSGGQKARVALAELTLN----------APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIR  135 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~----------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~  135 (184)
                      .+++.+|||||++||+||+||+.          +|++||+||||++||+.++..+++.|.++   |.+|+||||+.++..
T Consensus       945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~ 1024 (1042)
T TIGR00618       945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRE 1024 (1042)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHH
Confidence            35789999999999999999986          79999999999999999999999888654   679999999999999


Q ss_pred             hhcCeEEEEeCC
Q psy11928        136 DTECTLWVIENQ  147 (184)
Q Consensus       136 ~~~~~i~~l~~g  147 (184)
                      .+|++|.|++.+
T Consensus      1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1025 RIPHRILVKKTN 1036 (1042)
T ss_pred             hhCCEEEEEECC
Confidence            999999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00634 recN DNA repair protein RecN

Probab=99.62  E-value=1.9e-15  Score=133.41  Aligned_cols=74  Identities=24%  Similarity=0.319  Sum_probs=67.5

Q ss_pred             cCCChhHHHHHHHHHHHhcC----CCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         73 KDLSGGQKARVALAELTLNA----PDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      ..|||||+||++||++++..    |+++|+||||+|||+..+..+.+.|.+.  +.+||+|||++..+. .||+++++.+
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k  517 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK  517 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence            57999999999999999885    6999999999999999999999999865  679999999999886 7999999987


Q ss_pred             C
Q psy11928        147 Q  147 (184)
Q Consensus       147 g  147 (184)
                      |
T Consensus       518 ~  518 (563)
T TIGR00634       518 E  518 (563)
T ss_pred             c
Confidence            5

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.61  E-value=2.5e-15  Score=132.34  Aligned_cols=78  Identities=27%  Similarity=0.343  Sum_probs=68.3

Q ss_pred             cccCCChhHHHHHHHHHHHh----------cCCCEEEeeCCC-CCCCHHHHHHHHHHHHhc-CcEEEEEecCHHHHHhhc
Q psy11928         71 KMKDLSGGQKARVALAELTL----------NAPDVIILDEPT-NNLDIESIDALADAINEY-KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~----------~~p~illlDEPt-~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~~~~~  138 (184)
                      ++.+|||||+||++||++++          .+|+++|||||| ++||+.++..+.+.|.+. +.|||+|||+..... .|
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~-~~  543 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQ-KF  543 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchh-hh
Confidence            57899999999999999987          599999999998 789999999999999886 569999999977664 67


Q ss_pred             CeEEEEeC-CeE
Q psy11928        139 CTLWVIEN-QTI  149 (184)
Q Consensus       139 ~~i~~l~~-g~i  149 (184)
                      ++++++.+ |+.
T Consensus       544 d~~~~l~~~~~~  555 (562)
T PHA02562        544 DRHLKMEKVGRF  555 (562)
T ss_pred             hcEEEEEEECCe
Confidence            99888875 544

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.59  E-value=6.5e-15  Score=110.35  Aligned_cols=74  Identities=35%  Similarity=0.345  Sum_probs=64.6

Q ss_pred             ccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         72 MKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      ..+||+||+||++++++++.    +|+++|+|||++|+|+..+..+.+.+.++   +.++|++||+.+... .+|+++.|
T Consensus        75 ~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l  153 (162)
T cd03227          75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHI  153 (162)
T ss_pred             eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEE
Confidence            35799999999999999986    78999999999999999999888877653   469999999999987 47888877


Q ss_pred             eC
Q psy11928        145 EN  146 (184)
Q Consensus       145 ~~  146 (184)
                      ..
T Consensus       154 ~~  155 (162)
T cd03227         154 KK  155 (162)
T ss_pred             EE
Confidence            54

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.58  E-value=1.6e-15  Score=117.34  Aligned_cols=92  Identities=18%  Similarity=0.171  Sum_probs=73.7

Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHH---hcCcEEEEEecCH
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD-AIN---EYKGGVIIVSHDE  131 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~---~~~~tiiivsHd~  131 (184)
                      +++..++..+... ...+++|+||+|++.+++++ .+|+++++||||+|||+..+..+.. .+.   +.+.++|++||+.
T Consensus        74 ~~~~~lg~~~~l~-~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~  151 (200)
T cd03280          74 NIFADIGDEQSIE-QSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG  151 (200)
T ss_pred             EEEEecCchhhhh-cCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH
Confidence            4445556654444 36899999999999999884 8999999999999999999887753 343   3478999999985


Q ss_pred             HHHHhhcCeEEEEeCCeEE
Q psy11928        132 RLIRDTECTLWVIENQTIE  150 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i~  150 (184)
                       .+...|++++.+++|++.
T Consensus       152 -~l~~~~d~~~~l~~g~l~  169 (200)
T cd03280         152 -ELKAYAYKREGVENASME  169 (200)
T ss_pred             -HHHHHHhcCCCeEEEEEE
Confidence             455789999999999885

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK10869 recombination and repair protein; Provisional

Probab=99.57  E-value=1.4e-14  Score=127.48  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=66.0

Q ss_pred             CCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         74 DLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        74 ~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      .+||||+||++||++++.    +|+++|+|||++|||..+...+.+.+.+.  +.+||+|||++..+ ..||+++.+.++
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~  508 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE  508 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence            589999999999999997    58999999999999999999999999875  46999999999987 589999888764

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.54  E-value=2.4e-14  Score=134.04  Aligned_cols=77  Identities=27%  Similarity=0.306  Sum_probs=70.3

Q ss_pred             ccccCCChhHHHHHHHHHHHhc--------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928         70 IKMKDLSGGQKARVALAELTLN--------APDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~--------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~  138 (184)
                      +++.+|||||+++++||+||+.        +|+++|+||||++||+.+...+++.|...   |.||+||||..++..++.
T Consensus       945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246        945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence            5899999999999999999996        89999999999999999999999888653   679999999999999998


Q ss_pred             CeEEEEeC
Q psy11928        139 CTLWVIEN  146 (184)
Q Consensus       139 ~~i~~l~~  146 (184)
                      .+|.|-+.
T Consensus      1025 ~qi~V~k~ 1032 (1047)
T PRK10246       1025 VQIKVKKI 1032 (1047)
T ss_pred             ceEEEEEC
Confidence            88887765

>PRK03918 chromosome segregation protein; Provisional

Probab=99.54  E-value=2.1e-14  Score=132.37  Aligned_cols=75  Identities=37%  Similarity=0.454  Sum_probs=65.2

Q ss_pred             ccccCCChhHHHH------HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         70 IKMKDLSGGQKAR------VALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        70 ~~~~~LSgG~kqr------v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      +++..|||||+++      ++||++++.+|+++|+||||++||+..+..+.+.|..+   +.+||+||||.++. ..|++
T Consensus       784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d~  862 (880)
T PRK03918        784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAADY  862 (880)
T ss_pred             CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCCe
Confidence            4789999999995      55566788999999999999999999999999988654   46999999999865 58999


Q ss_pred             EEEEe
Q psy11928        141 LWVIE  145 (184)
Q Consensus       141 i~~l~  145 (184)
                      +++|.
T Consensus       863 ~~~l~  867 (880)
T PRK03918        863 VIRVS  867 (880)
T ss_pred             EEEEE
Confidence            99987

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.54  E-value=2.1e-14  Score=116.00  Aligned_cols=78  Identities=23%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             cccCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhc---
Q psy11928         71 KMKDLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE---  138 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~---  138 (184)
                      ..+.+|+||+|++++|++++         .+|+++|+||||++||+..+..+.+.+.+.+ .++++||+...+..+|   
T Consensus       180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~  258 (270)
T cd03242         180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRR  258 (270)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccC
Confidence            35668999999999999985         7999999999999999999999999998876 5677777777777777   


Q ss_pred             CeEEEEeCCeE
Q psy11928        139 CTLWVIENQTI  149 (184)
Q Consensus       139 ~~i~~l~~g~i  149 (184)
                      ++++.+++|++
T Consensus       259 ~~i~~l~~g~i  269 (270)
T cd03242         259 AQIFRVDAGTL  269 (270)
T ss_pred             ccEEEEeCcEE
Confidence            67888999875

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00606 rad50 rad50

Probab=99.53  E-value=1.9e-14  Score=137.39  Aligned_cols=69  Identities=39%  Similarity=0.481  Sum_probs=62.4

Q ss_pred             cccCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--------CcEEEEEecCHHHHHh
Q psy11928         71 KMKDLSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--------KGGVIIVSHDERLIRD  136 (184)
Q Consensus        71 ~~~~LSgG~kq------rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--------~~tiiivsHd~~~~~~  136 (184)
                      ..+.|||||+|      |++||++++.+|++++|||||+|||+.+...+.+.|...        +.+||+||||++++..
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            46899999999      999999999999999999999999999999888777543        5699999999999998


Q ss_pred             hcC
Q psy11928        137 TEC  139 (184)
Q Consensus       137 ~~~  139 (184)
                      +|.
T Consensus      1276 ~~~ 1278 (1311)
T TIGR00606      1276 LGR 1278 (1311)
T ss_pred             Hhh
Confidence            874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01156 chromosome segregation protein; Provisional

Probab=99.52  E-value=5.1e-14  Score=130.25  Aligned_cols=74  Identities=32%  Similarity=0.492  Sum_probs=64.9

Q ss_pred             cccCCChhHHHHHHH------HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cC--cEEEEEecCHHHHHhhc
Q psy11928         71 KMKDLSGGQKARVAL------AELTLNAPDVIILDEPTNNLDIESIDALADAINE----YK--GGVIIVSHDERLIRDTE  138 (184)
Q Consensus        71 ~~~~LSgG~kqrv~l------aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~--~tiiivsHd~~~~~~~~  138 (184)
                      ++..|||||++|++|      |++++.+|++++|||||++||+..+..+.+++..    .+  .+||+||||.+++ ..|
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~  876 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA  876 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence            689999999999976      4899999999999999999999999999888753    22  3899999999988 489


Q ss_pred             CeEEEEe
Q psy11928        139 CTLWVIE  145 (184)
Q Consensus       139 ~~i~~l~  145 (184)
                      |+++.+.
T Consensus       877 d~ii~~~  883 (895)
T PRK01156        877 DVAYEVK  883 (895)
T ss_pred             CeEEEEE
Confidence            9998886

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.51  E-value=1.5e-13  Score=122.18  Aligned_cols=107  Identities=26%  Similarity=0.360  Sum_probs=87.6

Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVII  126 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii  126 (184)
                      +..+.|..+||.....-++...|||||.|||-||.-|..+.   -+++|||||.||-..-.+.|++.|.++   |.|||+
T Consensus       801 rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViV  880 (935)
T COG0178         801 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIV  880 (935)
T ss_pred             HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            34456778899865555688999999999999999998776   999999999999999999999888765   789999


Q ss_pred             EecCHHHHHhhcCeEEEEe------CCeEEEecCChhHHHH
Q psy11928        127 VSHDERLIRDTECTLWVIE------NQTIEEIDGDFDDYRK  161 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l~------~g~i~~~~~~~~~~~~  161 (184)
                      |.|+++.+. .||.|+-|-      .|+|+. .|++++..+
T Consensus       881 IEHNLdVIk-~AD~IIDLGPeGG~~GG~iva-~GTPeeva~  919 (935)
T COG0178         881 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVA-SGTPEEVAK  919 (935)
T ss_pred             EecccceEe-ecCEEEEcCCCCCCCCceEEE-ecCHHHHHh
Confidence            999999996 578777662      356664 677766544

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.51  E-value=5.7e-15  Score=122.51  Aligned_cols=146  Identities=23%  Similarity=0.269  Sum_probs=99.8

Q ss_pred             CcccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHH-HH------Hhc---C-CCHHHHHHHHhhCCCCcc---
Q psy11928          1 MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEY-LQ------RLF---N-LPYEKARKQLGTFGLAGH---   66 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~-~~------~~~---~-~~~~~~~~~l~~~~l~~~---   66 (184)
                      |.++|+++|++|+|.+++..-    ..+   ++..+..+... +.      ...   + .+.+.+...++++.+...   
T Consensus       367 ~LLtGL~~PqsG~I~ldg~pV----~~e---~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl  439 (546)
T COG4615         367 MLLTGLYQPQSGEILLDGKPV----SAE---QLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSL  439 (546)
T ss_pred             HHHhcccCCCCCceeECCccC----CCC---CHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcc
Confidence            568999999999998876320    100   00000000000 00      001   1 234556666666554321   


Q ss_pred             cc-cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEecCHHHHHhhcCeE
Q psy11928         67 AH-TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA----INEYKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        67 ~~-~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~----l~~~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      .+ +-.+-.||.|||+|+++.-|++.+.||+++||=.+.=||.-++++.+.    +++.|+||+.||||-.-.. .+||+
T Consensus       440 ~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrl  518 (546)
T COG4615         440 NDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRL  518 (546)
T ss_pred             cCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHH
Confidence            11 113568999999999999999999999999999999999999887654    4788999999999955543 47999


Q ss_pred             EEEeCCeEEEecC
Q psy11928        142 WVIENQTIEEIDG  154 (184)
Q Consensus       142 ~~l~~g~i~~~~~  154 (184)
                      +.+++|++++..|
T Consensus       519 l~~~~G~~~e~tg  531 (546)
T COG4615         519 LEMRNGQLSELTG  531 (546)
T ss_pred             HHHhcCceeeccc
Confidence            9999999976543

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.49  E-value=5.5e-14  Score=110.52  Aligned_cols=92  Identities=16%  Similarity=0.122  Sum_probs=75.0

Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHH--hcCCCEEEeeCC---CCCCCHHHHHHHH-HHHHh-cCcEEEE
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELT--LNAPDVIILDEP---TNNLDIESIDALA-DAINE-YKGGVII  126 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral--~~~p~illlDEP---t~~LD~~~~~~l~-~~l~~-~~~tiii  126 (184)
                      +.+++..+++.+.    ..+.+|.|+++++.+++++  +.+|+++|+|||   |++||+.+..+.. +.+.+ .+.++|+
T Consensus        73 ~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vli  148 (222)
T cd03285          73 VDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLF  148 (222)
T ss_pred             cceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            3456777777642    3578999999999999999  899999999999   9999999886544 66654 4789999


Q ss_pred             EecCHHHHHhhcCeEEEEeCCeEE
Q psy11928        127 VSHDERLIRDTECTLWVIENQTIE  150 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l~~g~i~  150 (184)
                      +||+ .++..+|+++..+++|++.
T Consensus       149 sTH~-~el~~~~~~~~~i~~g~~~  171 (222)
T cd03285         149 ATHF-HELTALADEVPNVKNLHVT  171 (222)
T ss_pred             Eech-HHHHHHhhcCCCeEEEEEE
Confidence            9996 6667799998888888874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0060|consensus

Probab=99.49  E-value=3.4e-13  Score=116.25  Aligned_cols=139  Identities=22%  Similarity=0.146  Sum_probs=100.5

Q ss_pred             cccCcccCCceeEEecCC---eEEEEEecCCCCCCCccCCHHHHHHH--------hcCCCHHHHHHHHhhCCCCc-----
Q psy11928          2 YAHCDLQPQQGELKKNHR---LRIGRFDQHSGEHLTAEETPAEYLQR--------LFNLPYEKARKQLGTFGLAG-----   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~---~~ig~v~q~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~~-----   65 (184)
                      +++|+-+-.+|++....+   ..+-|+||.|+  ++.. |+.+-+-.        ....+.+++.++|+.+++.+     
T Consensus       480 vlggLWp~~~G~l~k~~~~~~~~lfflPQrPY--mt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~  556 (659)
T KOG0060|consen  480 VLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPY--MTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE  556 (659)
T ss_pred             HHhcccccCCCeEEecccCCCCceEEecCCCC--cccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh
Confidence            456665558999975433   45999999985  4433 33331110        01123445555555554432     


Q ss_pred             -------ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhc
Q psy11928         66 -------HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        66 -------~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~  138 (184)
                             +.+  =...||+||+||+++||.+.++|++-+|||-||++|......+.+.+++.+.|.|-|+|....-+ .-
T Consensus       557 ggld~~~~~d--W~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fH  633 (659)
T KOG0060|consen  557 GGLDQQVDWD--WMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FH  633 (659)
T ss_pred             CCCCchhhcc--HHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hh
Confidence                   111  24689999999999999999999999999999999999999999999999999999999988875 45


Q ss_pred             CeEEEEeC
Q psy11928        139 CTLWVIEN  146 (184)
Q Consensus       139 ~~i~~l~~  146 (184)
                      +.++-|..
T Consensus       634 d~~L~~~g  641 (659)
T KOG0060|consen  634 DYVLRMDG  641 (659)
T ss_pred             hEEEEecC
Confidence            66666654

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.47  E-value=1e-13  Score=130.45  Aligned_cols=74  Identities=28%  Similarity=0.433  Sum_probs=65.5

Q ss_pred             ccccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEE
Q psy11928         70 IKMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      .++.+|||||+++++||++++    .+|+++||||||++||+..+..+.++|...  +.++|||||++.++. .||+++.
T Consensus      1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~-~~d~~~~ 1163 (1179)
T TIGR02168      1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTME-VADQLYG 1163 (1179)
T ss_pred             ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHH-HhhhHee
Confidence            478999999999999999984    677999999999999999999999999765  468999999999874 6999865


Q ss_pred             E
Q psy11928        144 I  144 (184)
Q Consensus       144 l  144 (184)
                      +
T Consensus      1164 ~ 1164 (1179)
T TIGR02168      1164 V 1164 (1179)
T ss_pred             e
Confidence            4

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK00064 recF recombination protein F; Reviewed

Probab=99.44  E-value=4.2e-13  Score=112.59  Aligned_cols=79  Identities=22%  Similarity=0.238  Sum_probs=70.3

Q ss_pred             cccCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhc--C
Q psy11928         71 KMKDLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE--C  139 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~--~  139 (184)
                      ....+|.||++++.+|+.++         .+|+|+|+|||+++||+..+..+.+.+.+.+..++++||+.+.+...+  +
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~  349 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENA  349 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccC
Confidence            45789999999999999986         799999999999999999999999999876778999999988876654  4


Q ss_pred             eEEEEeCCeE
Q psy11928        140 TLWVIENQTI  149 (184)
Q Consensus       140 ~i~~l~~g~i  149 (184)
                      +++.+++|++
T Consensus       350 ~i~~v~~G~i  359 (361)
T PRK00064        350 KIFHVEQGKI  359 (361)
T ss_pred             cEEEEeCCEE
Confidence            7889999976

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.43  E-value=1.3e-12  Score=109.20  Aligned_cols=141  Identities=24%  Similarity=0.265  Sum_probs=107.2

Q ss_pred             ccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcc-cccccccCCChhHHHHHHH
Q psy11928          7 LQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGH-AHTIKMKDLSGGQKARVAL   85 (184)
Q Consensus         7 ~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgG~kqrv~l   85 (184)
                      ++|++|.|.+-...--+.+|....+.+. ..|+.+.+....+ +...+.++|.+.|+.+. +-.+++++||.|||.|+.|
T Consensus       441 y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~tilehl~s~tG-D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KL  518 (593)
T COG2401         441 YRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTILEHLRSKTG-DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKL  518 (593)
T ss_pred             cCCCCCceeccccchhhccCcccccccC-chhHHHHHhhccC-chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHH
Confidence            6899999986544434456665444444 5566666554332 22446789999999752 3345789999999999999


Q ss_pred             HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhh-cCeEEEEeCCeE
Q psy11928         86 AELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDT-ECTLWVIENQTI  149 (184)
Q Consensus        86 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~-~~~i~~l~~g~i  149 (184)
                      |+++..+|.+++.||=.++||+.+...+..-|.    +.+.|+++|||..++...+ -|.++.+.-|++
T Consensus       519 Akllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v  587 (593)
T COG2401         519 AKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV  587 (593)
T ss_pred             HHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence            999999999999999999999999877776664    4688999999999999988 477776665654

>KOG2355|consensus

Probab=99.42  E-value=8.6e-13  Score=101.35  Aligned_cols=113  Identities=19%  Similarity=0.215  Sum_probs=93.0

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH
Q psy11928         36 EETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD  115 (184)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  115 (184)
                      ..++...+....+...++-+.+++.+.++- .+  +...+|-|||+||+|+..|+..=++|||||-|-.||..++..+++
T Consensus       112 D~sae~mifgV~g~dp~Rre~LI~iLDIdl-~W--RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLe  188 (291)
T KOG2355|consen  112 DISAEHMIFGVGGDDPERREKLIDILDIDL-RW--RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLE  188 (291)
T ss_pred             cccHHHHHhhccCCChhHhhhhhhheeccc-eE--EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHH
Confidence            344444444333444556667777777753 33  578999999999999999999999999999999999999999999


Q ss_pred             HHHh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928        116 AINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       116 ~l~~----~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      ++++    .+.||++.||..+-++...++++.+++|+++.
T Consensus       189 FlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  189 FLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             HHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence            9975    36899999999999999999999999999864

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.38  E-value=1.2e-12  Score=123.40  Aligned_cols=74  Identities=23%  Similarity=0.270  Sum_probs=65.8

Q ss_pred             cccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         71 KMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      ++..||||||++++||++|+.    +|+++|||||+++||+..+..+.++|.++  +.++|+|||+...+ ..||+++.+
T Consensus      1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~~~ 1149 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAIGV 1149 (1164)
T ss_pred             cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeEeE
Confidence            578999999999999999984    78999999999999999999999999876  35899999999866 689998766


Q ss_pred             e
Q psy11928        145 E  145 (184)
Q Consensus       145 ~  145 (184)
                      .
T Consensus      1150 ~ 1150 (1164)
T TIGR02169      1150 T 1150 (1164)
T ss_pred             E
Confidence            4

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.35  E-value=2.4e-12  Score=118.98  Aligned_cols=76  Identities=34%  Similarity=0.538  Sum_probs=65.0

Q ss_pred             cccCCChhHHH------HHHHHHHHhcC-----C-CEEEeeCCCCCCCHHHHHHHHHHHHhc---Cc-EEEEEecCHHHH
Q psy11928         71 KMKDLSGGQKA------RVALAELTLNA-----P-DVIILDEPTNNLDIESIDALADAINEY---KG-GVIIVSHDERLI  134 (184)
Q Consensus        71 ~~~~LSgG~kq------rv~laral~~~-----p-~illlDEPt~~LD~~~~~~l~~~l~~~---~~-tiiivsHd~~~~  134 (184)
                      ++..||||||+      |++++++++.+     | +++|+||||++||+..+..+.++|..+   +. +||+||||..++
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~  857 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV  857 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence            47899999999      89999988863     3 679999999999999999999888764   33 799999999998


Q ss_pred             HhhcCeEEEEeCC
Q psy11928        135 RDTECTLWVIENQ  147 (184)
Q Consensus       135 ~~~~~~i~~l~~g  147 (184)
                      . .||+++.+...
T Consensus       858 ~-~ad~~~~~~~~  869 (880)
T PRK02224        858 G-AADDLVRVEKD  869 (880)
T ss_pred             H-hcCeeEEeecC
Confidence            6 69999988644

>KOG0064|consensus

Probab=99.32  E-value=2.8e-12  Score=109.83  Aligned_cols=128  Identities=17%  Similarity=0.191  Sum_probs=96.8

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCcc---------CCHHHHHHHhcCCCHHHHHHHHhhCCCC--------
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAE---------ETPAEYLQRLFNLPYEKARKQLGTFGLA--------   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------   64 (184)
                      +|.|+-+...|........++-|+||.|+  ++..         ++..++...  +..+.....+|..+.++        
T Consensus       527 ILggLWPvy~g~L~~P~~~~mFYIPQRPY--ms~gtlRDQIIYPdS~e~~~~k--g~~d~dL~~iL~~v~L~~i~qr~~g  602 (728)
T KOG0064|consen  527 ILGGLWPVYNGLLSIPRPNNIFYIPQRPY--MSGGTLRDQIIYPDSSEQMKRK--GYTDQDLEAILDIVHLEHILQREGG  602 (728)
T ss_pred             HHhccCcccCCeeecCCCcceEeccCCCc--cCcCcccceeecCCcHHHHHhc--CCCHHHHHHHHHHhhHHHHHHhccC
Confidence            67788777889888877788999999985  3211         222222222  33444455554444332        


Q ss_pred             --cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Q psy11928         65 --GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIR  135 (184)
Q Consensus        65 --~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~  135 (184)
                        ...+.  -..||||+|||+++||.+.++|+.-+|||-||+..+.....+.+..+.+|.+.|-|||.+....
T Consensus       603 ~da~~dW--kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk  673 (728)
T KOG0064|consen  603 WDAVRDW--KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK  673 (728)
T ss_pred             hhhhccH--HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHH
Confidence              22222  2579999999999999999999999999999999999999999999999999999999988875

>KOG0063|consensus

Probab=99.30  E-value=3.9e-12  Score=106.71  Aligned_cols=140  Identities=22%  Similarity=0.224  Sum_probs=101.9

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG   78 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG   78 (184)
                      .++|.++|++|.=.  ...+++|-||...+..++  ++...+...   ......-+.+.++-+.++...+ +.+..||||
T Consensus       386 mlag~~~pd~~~e~--p~lnVSykpqkispK~~~--tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~d-qevq~lSgg  460 (592)
T KOG0063|consen  386 MLAGRLKPDEGGEI--PVLNVSYKPQKISPKREG--TVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIID-QEVQGLSGG  460 (592)
T ss_pred             HHhcCCCCCccCcc--cccceeccccccCccccc--hHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHh-HHhhcCCch
Confidence            36788888876221  134789999976543222  333322211   1122344566777887876665 479999999


Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      ++|||++|..|=..+++++.|||.+.||.+.+..--..+++    .++|-.+|.||.--+..++||+++.+.
T Consensus       461 elQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  461 ELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             hhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence            99999999999999999999999999999988655544444    478999999999988889999988754

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.26  E-value=1.7e-11  Score=94.95  Aligned_cols=91  Identities=11%  Similarity=0.018  Sum_probs=66.4

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH----HHHhcCcEEEEEecCHH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD----AINEYKGGVIIVSHDER  132 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~----~l~~~~~tiiivsHd~~  132 (184)
                      ++..++..+... ...+.+|++++| +..+.+++.+|+++|+||||+|+|+.....+..    .+.+.+.++|++||+.+
T Consensus        75 i~~~~~~~d~i~-~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~  152 (202)
T cd03243          75 IFTRIGAEDSIS-DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHE  152 (202)
T ss_pred             EEEEecCccccc-CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHH
Confidence            344445444443 357788888776 666678889999999999999999987766543    33345789999999998


Q ss_pred             HHHhhcCeEEEEeCCeEE
Q psy11928        133 LIRDTECTLWVIENQTIE  150 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~  150 (184)
                      ++. .++++..++.+++.
T Consensus       153 ~~~-~~~~~~~l~~~~~~  169 (202)
T cd03243         153 LAD-LPEQVPGVKNLHME  169 (202)
T ss_pred             HHH-HhhcCCCeEEEEEE
Confidence            877 46676667777664

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0065|consensus

Probab=99.26  E-value=2.1e-11  Score=113.47  Aligned_cols=138  Identities=19%  Similarity=0.254  Sum_probs=103.2

Q ss_pred             CeEEEEEecCCC--CCCCccCCHHHHHHHhc-------CCCHHH-----HHHHHhhCCCCccccc----ccccCCChhHH
Q psy11928         19 RLRIGRFDQHSG--EHLTAEETPAEYLQRLF-------NLPYEK-----ARKQLGTFGLAGHAHT----IKMKDLSGGQK   80 (184)
Q Consensus        19 ~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~-------~~~~~~-----~~~~l~~~~l~~~~~~----~~~~~LSgG~k   80 (184)
                      +..++|++|+..  +.+|+.+|+ ++...-.       +.++.+     .+.+++.+|++.-.+.    .-....|||||
T Consensus       188 ~~~~aY~~e~DvH~p~lTVreTl-dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGer  266 (1391)
T KOG0065|consen  188 KKTVAYNSEQDVHFPELTVRETL-DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGER  266 (1391)
T ss_pred             CceEEeccccccccceeEEeehh-hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCccc
Confidence            456999999753  678888885 3433211       122222     3367899999753332    24678999999


Q ss_pred             HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecC-HHHHHhhcCeEEEEeCCeEEEecCC
Q psy11928         81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHD-ERLIRDTECTLWVIENQTIEEIDGD  155 (184)
Q Consensus        81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd-~~~~~~~~~~i~~l~~g~i~~~~~~  155 (184)
                      +||+++-+++.+|+++++||+|+|||..+.-++.+.+++.    +.|.+++-|. -.++..+-|.|.+|.+|.++. .|+
T Consensus       267 KRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy-~Gp  345 (1391)
T KOG0065|consen  267 KRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY-QGP  345 (1391)
T ss_pred             ceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEE-ecc
Confidence            9999999999999999999999999999999998888764    5677776666 445556779999999999874 555


Q ss_pred             hhH
Q psy11928        156 FDD  158 (184)
Q Consensus       156 ~~~  158 (184)
                      .++
T Consensus       346 ~d~  348 (1391)
T KOG0065|consen  346 RDE  348 (1391)
T ss_pred             HHH
Confidence            544

>TIGR00611 recf recF protein

Probab=99.24  E-value=2.7e-11  Score=101.82  Aligned_cols=63  Identities=21%  Similarity=0.210  Sum_probs=58.7

Q ss_pred             cCCChhHHHHHHHHHHHhc---------CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Q psy11928         73 KDLSGGQKARVALAELTLN---------APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIR  135 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~---------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~  135 (184)
                      ..+|.||++++.||.+++.         +|+|+|||||+++||+..+..+.+.+.+.+..++++||+.+.+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~  345 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK  345 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence            5789999999999999999         99999999999999999999999999876779999999987765

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.22  E-value=1.2e-11  Score=94.58  Aligned_cols=83  Identities=12%  Similarity=0.099  Sum_probs=59.6

Q ss_pred             HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHH---Hh-cCcEEEEEec
Q psy11928         55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAI---NE-YKGGVIIVSH  129 (184)
Q Consensus        55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l---~~-~~~tiiivsH  129 (184)
                      .+++..++..+... +..+++|+|++|...+... +.+|+++|+|||++|+|+.....+. ..+   .+ .+.++|++||
T Consensus        43 d~il~~~~~~d~~~-~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH  120 (185)
T smart00534       43 DRIFTRIGASDSLA-QGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATH  120 (185)
T ss_pred             ceEEEEeCCCCchh-ccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            34566777766654 4788999999874444432 4599999999999999999766553 333   33 3679999999


Q ss_pred             CHHHHHhhcCe
Q psy11928        130 DERLIRDTECT  140 (184)
Q Consensus       130 d~~~~~~~~~~  140 (184)
                      +.+. ...|+.
T Consensus       121 ~~~l-~~~~~~  130 (185)
T smart00534      121 YHEL-TKLADE  130 (185)
T ss_pred             HHHH-HHHhhc
Confidence            9964 456653

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.22  E-value=1.5e-10  Score=103.52  Aligned_cols=103  Identities=26%  Similarity=0.329  Sum_probs=82.9

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA--PDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~--p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~  131 (184)
                      .|-.+||...-..+....|||||.||+-||.-+=.+  -=+++||||+-||-+.-.+.|.+.|++   .|.|+|+|.||.
T Consensus       464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe  543 (935)
T COG0178         464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE  543 (935)
T ss_pred             HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence            355678876545568999999999999999998554  467899999999999998888887764   578999999999


Q ss_pred             HHHHhhcCeEEEEe------CCeEEEecCChhHHHH
Q psy11928        132 RLIRDTECTLWVIE------NQTIEEIDGDFDDYRK  161 (184)
Q Consensus       132 ~~~~~~~~~i~~l~------~g~i~~~~~~~~~~~~  161 (184)
                      +.+. .+|+++-|-      .|.|+ +.|+++++.+
T Consensus       544 dti~-~AD~iIDiGPgAG~~GGeIv-~~Gtp~~i~~  577 (935)
T COG0178         544 DTIR-AADHIIDIGPGAGEHGGEIV-AEGTPEELLA  577 (935)
T ss_pred             HHHh-hcCEEEeeCCCCCcCCCEEE-EccCHHHHHh
Confidence            9986 589988774      35665 5788777654

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.18  E-value=5e-11  Score=92.61  Aligned_cols=83  Identities=8%  Similarity=0.065  Sum_probs=63.7

Q ss_pred             HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH----HHHHHHHhcCcEEEEEecC
Q psy11928         55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID----ALADAINEYKGGVIIVSHD  130 (184)
Q Consensus        55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~----~l~~~l~~~~~tiiivsHd  130 (184)
                      ..++..++..+... +..+.+|+|++|. ..+.+++.+|+++|+|||++|+|+....    .+.+.+.+.+.++|++||+
T Consensus        73 d~I~~~~~~~d~~~-~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~  150 (204)
T cd03282          73 NRLLSRLSNDDSME-RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHF  150 (204)
T ss_pred             hheeEecCCccccc-hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            45666777765554 4789999999976 4556688999999999999999997643    3444455568899999999


Q ss_pred             HHHHHhhcC
Q psy11928        131 ERLIRDTEC  139 (184)
Q Consensus       131 ~~~~~~~~~  139 (184)
                      .+++...+.
T Consensus       151 ~~l~~~~~~  159 (204)
T cd03282         151 RDIAAILGN  159 (204)
T ss_pred             HHHHHHhhc
Confidence            999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.17  E-value=1.1e-10  Score=108.25  Aligned_cols=75  Identities=31%  Similarity=0.418  Sum_probs=63.4

Q ss_pred             ccccCCChhHHHHHHHHHHH------hcC--CCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928         70 IKMKDLSGGQKARVALAELT------LNA--PDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral------~~~--p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~  138 (184)
                      +++.+|||||+-.++||.+|      ..+  -+++++||||.+||+..+..+.+.|...   +.+|+|||||.++.+. +
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~-~  889 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKER-A  889 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHh-C
Confidence            58899999999998888776      445  6999999999999999999999998754   5799999999999976 4


Q ss_pred             CeEEEEe
Q psy11928        139 CTLWVIE  145 (184)
Q Consensus       139 ~~i~~l~  145 (184)
                      +.++.++
T Consensus       890 ~~~i~V~  896 (908)
T COG0419         890 DVRIRVK  896 (908)
T ss_pred             CeEEEEE
Confidence            5555554

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=99.15  E-value=7e-11  Score=113.19  Aligned_cols=67  Identities=22%  Similarity=0.251  Sum_probs=59.7

Q ss_pred             ccccCCChhHHHHHH----HHHH--------HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928         70 IKMKDLSGGQKARVA----LAEL--------TLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD  136 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~----lara--------l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~  136 (184)
                      ++++.|||||||+++    +|++        +..+|++++|||||++||+.++..+++++.+++.++||+||+++-...
T Consensus      1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~Wg~Y~ 1321 (1353)
T TIGR02680      1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREWGCYP 1321 (1353)
T ss_pred             ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchhcccc
Confidence            357999999999996    5645        458999999999999999999999999999999999999999887654

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK13695 putative NTPase; Provisional

Probab=99.11  E-value=3.3e-10  Score=85.63  Aligned_cols=96  Identities=19%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             ccccCCChhHHHHHHHHHHHhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         70 IKMKDLSGGQKARVALAELTLNAPDVIILDE--PTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      ++...+|++++-++.+++..+.+|+++++||  |+.++|+..++.+.+.+ +.+.++|+|+|+. .+...++++..+.+|
T Consensus        74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~i~~~~~~  151 (174)
T PRK13695         74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQEIKSRPGG  151 (174)
T ss_pred             eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHHHhccCCc
Confidence            4567899999999999999999999999999  77788888777887777 6789999999995 555678999999999


Q ss_pred             eEEEec-CChhHHHHHHHHHh
Q psy11928        148 TIEEID-GDFDDYRKELLEAL  167 (184)
Q Consensus       148 ~i~~~~-~~~~~~~~~~~~~~  167 (184)
                      ++.+.. .+.+...+.+++.+
T Consensus       152 ~i~~~~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        152 RVYELTPENRDSLPFEILNRL  172 (174)
T ss_pred             EEEEEcchhhhhHHHHHHHHH
Confidence            987653 34455555555443

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.08  E-value=2e-09  Score=84.08  Aligned_cols=85  Identities=32%  Similarity=0.419  Sum_probs=62.9

Q ss_pred             HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEE
Q psy11928         51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEYK--GGV  124 (184)
Q Consensus        51 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~ti  124 (184)
                      ...+.+.+...++..       ..||||||..++||.-|    ..++++++||||.++||...+..+.++|.+..  .-+
T Consensus       120 ~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~  192 (220)
T PF02463_consen  120 LKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQF  192 (220)
T ss_dssp             HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEE
T ss_pred             ccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345666677666643       28999999999998765    45679999999999999999999999999876  679


Q ss_pred             EEEecCHHHHHhhcCeEEE
Q psy11928        125 IIVSHDERLIRDTECTLWV  143 (184)
Q Consensus       125 iivsHd~~~~~~~~~~i~~  143 (184)
                      |++||+...... +++.+.
T Consensus       193 ii~Th~~~~~~~-a~~~~~  210 (220)
T PF02463_consen  193 IITTHNPEMFED-ADKLIG  210 (220)
T ss_dssp             EEE-S-HHHHTT--SEEEE
T ss_pred             cccccccccccc-cccccc
Confidence            999999888875 566543

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK14079 recF recombination protein F; Provisional

Probab=99.05  E-value=6.4e-10  Score=93.03  Aligned_cols=74  Identities=20%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             cCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEE
Q psy11928         73 KDLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      ..+|+||++++.+|..|+         .+|+++||||||++||...+.++.+.+.....++|-.|+    ....|++++.
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~----~~~~~~~~~~  337 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE----APPGAALTLR  337 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC----CCCCCceEEE
Confidence            568999999999999998         899999999999999999999999999765544444443    3346789999


Q ss_pred             EeCCeEE
Q psy11928        144 IENQTIE  150 (184)
Q Consensus       144 l~~g~i~  150 (184)
                      +++|++.
T Consensus       338 ~~~~~~~  344 (349)
T PRK14079        338 IEAGVFT  344 (349)
T ss_pred             EeccEec
Confidence            9998764

>KOG0063|consensus

Probab=99.04  E-value=3.3e-10  Score=95.29  Aligned_cols=91  Identities=23%  Similarity=0.330  Sum_probs=78.2

Q ss_pred             HHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCH
Q psy11928         55 RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDE  131 (184)
Q Consensus        55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~  131 (184)
                      .++++.+.|....+ +-+.+||||+-||.+||.+-+++.++.++|||.+.||...+......|+++   ..-||+|.||+
T Consensus       195 ~~~~~~~~L~~~~~-re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL  273 (592)
T KOG0063|consen  195 EEVCDQLDLNNLLD-REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL  273 (592)
T ss_pred             HHHHHHHHHhhHHH-hhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec
Confidence            44566667765554 578999999999999999999999999999999999999998887777765   46799999999


Q ss_pred             HHHHhhcCeEEEEeC
Q psy11928        132 RLIRDTECTLWVIEN  146 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~  146 (184)
                      +.+...+|-+..+..
T Consensus       274 sVLDylSDFiCcLYG  288 (592)
T KOG0063|consen  274 SVLDYLSDFICCLYG  288 (592)
T ss_pred             hHHHhhhcceeEEec
Confidence            999999999887753

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.93  E-value=2.1e-09  Score=84.23  Aligned_cols=77  Identities=26%  Similarity=0.337  Sum_probs=55.6

Q ss_pred             ccCCChhHHHH----HHHHHHH--hcCCCEEEeeCC---CCCCCHHHH-HHHHHHHHhc-CcEEEEEecCHHHHHhhcCe
Q psy11928         72 MKDLSGGQKAR----VALAELT--LNAPDVIILDEP---TNNLDIESI-DALADAINEY-KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        72 ~~~LSgG~kqr----v~laral--~~~p~illlDEP---t~~LD~~~~-~~l~~~l~~~-~~tiiivsHd~~~~~~~~~~  140 (184)
                      ..++|.|+.+.    ..+++++  +.+|+++|+|||   |+++|..+. ..+.+.+.+. +.++|++||+.+.. .++++
T Consensus        83 ~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~-~l~~~  161 (216)
T cd03284          83 SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELT-ELEGK  161 (216)
T ss_pred             hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHH-HHhhc
Confidence            35677777664    3466555  579999999999   999998764 5567777776 78999999997554 46666


Q ss_pred             EEEEeCCeE
Q psy11928        141 LWVIENQTI  149 (184)
Q Consensus       141 i~~l~~g~i  149 (184)
                      +..++++++
T Consensus       162 ~~~v~~~~~  170 (216)
T cd03284         162 LPRVKNFHV  170 (216)
T ss_pred             CCCeEEEEE
Confidence            544555554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.93  E-value=2.5e-09  Score=97.68  Aligned_cols=85  Identities=18%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH----HHHhcCcEEEEEecCHH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD----AINEYKGGVIIVSHDER  132 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~----~l~~~~~tiiivsHd~~  132 (184)
                      ++..+|-.+... +.+++||+||++++.|++++ .+|+++|+|||++|+|+.....+..    .+.+.+.++|++||+.+
T Consensus       374 i~~~ig~~~si~-~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e  451 (782)
T PRK00409        374 IFADIGDEQSIE-QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE  451 (782)
T ss_pred             EEEecCCccchh-hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence            334445444443 36789999999999999988 8999999999999999997766643    33445789999999999


Q ss_pred             HHHhhcCeEEE
Q psy11928        133 LIRDTECTLWV  143 (184)
Q Consensus       133 ~~~~~~~~i~~  143 (184)
                      .....+++..+
T Consensus       452 l~~~~~~~~~v  462 (782)
T PRK00409        452 LKALMYNREGV  462 (782)
T ss_pred             HHHHHhcCCCe
Confidence            88776665443

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.85  E-value=1.1e-08  Score=79.47  Aligned_cols=64  Identities=30%  Similarity=0.474  Sum_probs=52.0

Q ss_pred             cccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928         71 KMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI  134 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~  134 (184)
                      +...+|.|+++.+.++.++...+   .++++|||-++|.|.....+.+.+.+.   +.-||++||++.++
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            56778999999998888887766   899999999999999999999999764   46899999998765

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.83  E-value=1.6e-08  Score=76.68  Aligned_cols=76  Identities=5%  Similarity=0.052  Sum_probs=60.1

Q ss_pred             ccccCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCC---HHHHHHHHHHH---HhcCcEEEEEecCHHH----
Q psy11928         70 IKMKDLSGGQKA------RVALAELTLNAPDVIILDEPTNNLD---IESIDALADAI---NEYKGGVIIVSHDERL----  133 (184)
Q Consensus        70 ~~~~~LSgG~kq------rv~laral~~~p~illlDEPt~~LD---~~~~~~l~~~l---~~~~~tiiivsHd~~~----  133 (184)
                      ..+..+|+|++|      +.....+...+|+++++|||++.+|   ...+..+.+++   ++.+.|+|+++|+...    
T Consensus        67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~  146 (187)
T cd01124          67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG  146 (187)
T ss_pred             cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence            467889999998      5555555678999999999999999   66666665555   4457899999998765    


Q ss_pred             -----HHhhcCeEEEEe
Q psy11928        134 -----IRDTECTLWVIE  145 (184)
Q Consensus       134 -----~~~~~~~i~~l~  145 (184)
                           +..+||.++.++
T Consensus       147 ~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         147 FGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             cCcCceeEeeeEEEEEE
Confidence                 677889888776

A related protein is found in archaea.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.82  E-value=3e-08  Score=76.72  Aligned_cols=59  Identities=19%  Similarity=0.141  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHH-HHH---HhcCcEEEEEecCHHHHHhh
Q psy11928         79 QKARVALAELTLN--APDVIILDEPTNNLDIESIDALA-DAI---NEYKGGVIIVSHDERLIRDT  137 (184)
Q Consensus        79 ~kqrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l---~~~~~tiiivsHd~~~~~~~  137 (184)
                      +.+|+.-+...+.  +|+++|+||||+|+|+..+..+. ..+   .+.+.++|++||+++++...
T Consensus        90 e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~  154 (199)
T cd03283          90 ELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL  154 (199)
T ss_pred             HHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence            3455544444455  99999999999999999876553 233   34478999999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.77  E-value=2.1e-08  Score=67.98  Aligned_cols=50  Identities=34%  Similarity=0.476  Sum_probs=38.4

Q ss_pred             ccccCCChhHHHH-HHHHHH--H----hc------CCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928         70 IKMKDLSGGQKAR-VALAEL--T----LN------APDVIILDEPTNNLDIESIDALADAINE  119 (184)
Q Consensus        70 ~~~~~LSgG~kqr-v~lara--l----~~------~p~illlDEPt~~LD~~~~~~l~~~l~~  119 (184)
                      +..+.+||||||. +.++.+  +    ..      .|.+++|||||++||+..+..+++++++
T Consensus        28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            4789999999954 444333  2    22      3799999999999999999999998863

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.76  E-value=3e-08  Score=77.51  Aligned_cols=62  Identities=19%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH-HHHHHHHHh---c---CcEEEEEecCHHHHHhhc
Q psy11928         77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESI-DALADAINE---Y---KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~-~~l~~~l~~---~---~~tiiivsHd~~~~~~~~  138 (184)
                      .-+-||++++++++.+|+++|+|||++|+|+... ..+...+++   .   +.++|++||+.+.+....
T Consensus        93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281          93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence            3567999999999999999999999999999753 333334432   2   248999999999988653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=98.71  E-value=2.3e-08  Score=91.28  Aligned_cols=76  Identities=21%  Similarity=0.261  Sum_probs=58.4

Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHH---HhcCcEEEEEecCHHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAI---NEYKGGVIIVSHDERL  133 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l---~~~~~tiiivsHd~~~  133 (184)
                      ...++-..... ..+++||+||++++.+++++ .+|+++|+|||++|+|+.....+. .++   .+.+.++|++||+.+.
T Consensus       370 ~~~i~~~~si~-~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL  447 (771)
T TIGR01069       370 FADIGDEQSIE-QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL  447 (771)
T ss_pred             eeecChHhHHh-hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence            33344433333 36789999999999998876 789999999999999999887763 333   3457899999999887


Q ss_pred             HH
Q psy11928        134 IR  135 (184)
Q Consensus       134 ~~  135 (184)
                      ..
T Consensus       448 ~~  449 (771)
T TIGR01069       448 KA  449 (771)
T ss_pred             HH
Confidence            44

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.55  E-value=9.6e-08  Score=74.30  Aligned_cols=50  Identities=18%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             cccCCChh--HHHHHHHHHHHhcCCCEEEeeCCC-----CCCCHHHHHHHHHHHHhc
Q psy11928         71 KMKDLSGG--QKARVALAELTLNAPDVIILDEPT-----NNLDIESIDALADAINEY  120 (184)
Q Consensus        71 ~~~~LSgG--~kqrv~laral~~~p~illlDEPt-----~~LD~~~~~~l~~~l~~~  120 (184)
                      .++..||+  +++++.||++++.+|+++++||||     ++||+.++..+.+.+.++
T Consensus       147 e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        147 DISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            35666666  888899999999999999999999     999999999999999764

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.35  E-value=1.2e-06  Score=78.93  Aligned_cols=64  Identities=27%  Similarity=0.308  Sum_probs=49.8

Q ss_pred             cccCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCCCCHHHHHHHHH-HHHhcCcEEEEEecCHHHHH
Q psy11928         71 KMKDLSGGQKARVALAELTL------NAPDVIILDEPTNNLDIESIDALAD-AINEYKGGVIIVSHDERLIR  135 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~------~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~tiiivsHd~~~~~  135 (184)
                      ++..|||||+|-++||..++      ...++ ++||||+.||...+..+.. ++.....-||+.|||-+.-.
T Consensus       548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d~e~~~  618 (650)
T TIGR03185       548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEEVDE  618 (650)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccCCeEEEEechHhhCH
Confidence            56789999999976665442      23566 5699999999999999874 77776778999999877644

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.24  E-value=1.1e-06  Score=70.31  Aligned_cols=75  Identities=19%  Similarity=0.120  Sum_probs=62.3

Q ss_pred             cCCChhH--------HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH-H-HHHHHHHhcCcEEEEEecCHHHHHhhcCeEE
Q psy11928         73 KDLSGGQ--------KARVALAELTLNAPDVIILDEPTNNLDIESI-D-ALADAINEYKGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        73 ~~LSgG~--------kqrv~laral~~~p~illlDEPt~~LD~~~~-~-~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      ..+|||+        +||+++||++..+++|.++  ||+.+|..+. . -+.+.++..+.|+|++||++..... .+.|.
T Consensus       128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~-~paI~  204 (249)
T cd01128         128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRI-FPAID  204 (249)
T ss_pred             CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCC-CCeEE
Confidence            4579999        9999999999899999999  9999995333 2 3455555566899999999999875 68999


Q ss_pred             EEeCCeEE
Q psy11928        143 VIENQTIE  150 (184)
Q Consensus       143 ~l~~g~i~  150 (184)
                      +++.|++.
T Consensus       205 vl~s~sr~  212 (249)
T cd01128         205 ILKSGTRK  212 (249)
T ss_pred             EcCCCCcc
Confidence            99999874

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.21  E-value=8.5e-06  Score=65.94  Aligned_cols=65  Identities=23%  Similarity=0.358  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH--H-----------HhhcCeEEEEeC
Q psy11928         80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL--I-----------RDTECTLWVIEN  146 (184)
Q Consensus        80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~--~-----------~~~~~~i~~l~~  146 (184)
                      |.......+.+++|+++++|||++.   .....+.+.++ .+.++|++||+...  +           ..+++++++|++
T Consensus       182 k~~~~~~~i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~  257 (270)
T TIGR02858       182 KAEGMMMLIRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSR  257 (270)
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEec
Confidence            3444455556689999999999853   33444444444 48899999997655  4           256799999986


Q ss_pred             Ce
Q psy11928        147 QT  148 (184)
Q Consensus       147 g~  148 (184)
                      |+
T Consensus       258 ~~  259 (270)
T TIGR02858       258 RK  259 (270)
T ss_pred             CC
Confidence            54

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.14  E-value=9.3e-06  Score=63.73  Aligned_cols=61  Identities=18%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH----HHhc-CcEEEEEecCHHHHHhhc
Q psy11928         78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA----INEY-KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~----l~~~-~~tiiivsHd~~~~~~~~  138 (184)
                      .+-+++.-+...+.+|.++|+|||++|+++.....+...    +.+. +.++|++||+.+.+...+
T Consensus        95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~  160 (218)
T cd03286          95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH  160 (218)
T ss_pred             HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence            344555555555689999999999999999876554443    3444 779999999999988765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.13  E-value=6.8e-06  Score=75.91  Aligned_cols=61  Identities=20%  Similarity=0.164  Sum_probs=52.1

Q ss_pred             hcCCCEEEeeCCCCCC-CHHHHHHHHHHHHh---cCcEEEEEecCHHHHH---------hhcCeEEEEeCCeEE
Q psy11928         90 LNAPDVIILDEPTNNL-DIESIDALADAINE---YKGGVIIVSHDERLIR---------DTECTLWVIENQTIE  150 (184)
Q Consensus        90 ~~~p~illlDEPt~~L-D~~~~~~l~~~l~~---~~~tiiivsHd~~~~~---------~~~~~i~~l~~g~i~  150 (184)
                      ..+|.++++|||+.+| |+...+.+.+.++.   .+.+++++||+++.+.         ..|++.+++.+|++.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~  723 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR  723 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence            5799999999999999 68888888887754   4789999999999985         468888889888764

>COG4637 Predicted ATPase [General function prediction only]

Probab=97.96  E-value=5.3e-05  Score=62.05  Aligned_cols=69  Identities=33%  Similarity=0.509  Sum_probs=60.0

Q ss_pred             ccCCChhHHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCc--EEEEEecCHHHHHhhcCe
Q psy11928         72 MKDLSGGQKARVALAELTLN--APDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHDERLIRDTECT  140 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--tiiivsHd~~~~~~~~~~  140 (184)
                      ..+||-|+-+-++++.+|..  .|.++++|||=++|-|.....+..++.+..+  -|++|||...++..+-.+
T Consensus       268 ~~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~  340 (373)
T COG4637         268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEH  340 (373)
T ss_pred             hhhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhcccc
Confidence            34999999999999999975  4899999999999999999999998887643  899999999998876544

>PF13175 AAA_15: AAA ATPase domain

Probab=97.95  E-value=2.5e-05  Score=66.03  Aligned_cols=64  Identities=17%  Similarity=0.357  Sum_probs=52.6

Q ss_pred             ccccCCChhHHHHHHHHHHHh------cC-CC---EEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928         70 IKMKDLSGGQKARVALAELTL------NA-PD---VIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL  133 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~------~~-p~---illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~  133 (184)
                      -++..+|.|.++.+.|+..+.      .+ +.   ++++|||=.+|.|..+..+.+.|.+.    +.-||++||.+..
T Consensus       337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i  414 (415)
T PF13175_consen  337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI  414 (415)
T ss_pred             CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence            377899999998888776641      22 22   99999999999999999999998764    4589999999865

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.94  E-value=3.7e-05  Score=60.49  Aligned_cols=58  Identities=19%  Similarity=0.070  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH----HHHHHHHHhc-CcEEEEEecCHHHHHh
Q psy11928         79 QKARVALAELTLNAPDVIILDEPTNNLDIESI----DALADAINEY-KGGVIIVSHDERLIRD  136 (184)
Q Consensus        79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~----~~l~~~l~~~-~~tiiivsHd~~~~~~  136 (184)
                      +-+++.-+..-+.+|.++|+|||++|.|+...    ..+.+.+.+. +.++|++||+.+....
T Consensus        97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287          97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence            44455444455778999999999777775433    3345555555 6799999999998653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.80  E-value=0.00011  Score=58.00  Aligned_cols=73  Identities=18%  Similarity=0.091  Sum_probs=53.1

Q ss_pred             cCCChhHHHHHHHHHHHhc--CCCEEEeeCCCCC---CCHHHHHHHHHHH---HhcCcEEEEEecCHHH-------HHhh
Q psy11928         73 KDLSGGQKARVALAELTLN--APDVIILDEPTNN---LDIESIDALADAI---NEYKGGVIIVSHDERL-------IRDT  137 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~--~p~illlDEPt~~---LD~~~~~~l~~~l---~~~~~tiiivsHd~~~-------~~~~  137 (184)
                      ...|.++++.+..+...+.  +|+++++||||+.   .|......+.+.+   .+.+.|+++++|+..+       +..+
T Consensus        99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l  178 (234)
T PRK06067         99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI  178 (234)
T ss_pred             ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence            3457888999999998887  9999999999964   4455445554444   3447899999997654       4556


Q ss_pred             cCeEEEEe
Q psy11928        138 ECTLWVIE  145 (184)
Q Consensus       138 ~~~i~~l~  145 (184)
                      +|-++.|+
T Consensus       179 ~DgvI~L~  186 (234)
T PRK06067        179 CDVYLKLR  186 (234)
T ss_pred             eEEEEEEE
Confidence            67666665

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.77  E-value=4.8e-05  Score=60.13  Aligned_cols=71  Identities=23%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             CCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCC----CHHHHHHHHHHHHhc---CcEEEEEecCHHHH--------
Q psy11928         74 DLSGGQKARVALAELTL----NAPDVIILDEPTNNL----DIESIDALADAINEY---KGGVIIVSHDERLI--------  134 (184)
Q Consensus        74 ~LSgG~kqrv~laral~----~~p~illlDEPt~~L----D~~~~~~l~~~l~~~---~~tiiivsHd~~~~--------  134 (184)
                      .+|+++.++..+.+.+.    .+|+++++||||+++    |+.....+.+.++.+   +.|+ ++||+....        
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~  173 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTIL  173 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeE
Confidence            46777666655555443    369999999999999    777777788877643   4554 556665442        


Q ss_pred             HhhcCeEEEEe
Q psy11928        135 RDTECTLWVIE  145 (184)
Q Consensus       135 ~~~~~~i~~l~  145 (184)
                      ..+||-++.|+
T Consensus       174 ~~~~DgvI~L~  184 (230)
T PRK08533        174 RTAATMLIRLE  184 (230)
T ss_pred             EEeeeEEEEEE
Confidence            34556666554

>KOG0962|consensus

Probab=97.76  E-value=5.1e-05  Score=71.59  Aligned_cols=64  Identities=42%  Similarity=0.562  Sum_probs=49.9

Q ss_pred             CCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----c----CcEEEEEecCHHHHHhh
Q psy11928         74 DLSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----Y----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        74 ~LSgG~kq------rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~----~~tiiivsHd~~~~~~~  137 (184)
                      -=|.|||-      |+++|=.+..++.+|-|||||.+||.....-+...+.+    .    +--.|++|||..|+..+
T Consensus      1183 RcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i 1260 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLL 1260 (1294)
T ss_pred             CccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHh
Confidence            34778876      55666678999999999999999999988766554432    1    34799999999998764

>COG3910 Predicted ATPase [General function prediction only]

Probab=97.72  E-value=0.00018  Score=55.15  Aligned_cols=79  Identities=22%  Similarity=0.337  Sum_probs=62.9

Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      .....|.||-=---+.+. .++--++|||||-++|.|.-+-.+...|+.+   |.-+||+||.+-.+.-...+|+-++.+
T Consensus       126 sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~  204 (233)
T COG3910         126 SLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISES  204 (233)
T ss_pred             chhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecC
Confidence            467789999754444444 4567899999999999999999988888764   678999999998887666788888877


Q ss_pred             eEE
Q psy11928        148 TIE  150 (184)
Q Consensus       148 ~i~  150 (184)
                      .+.
T Consensus       205 g~~  207 (233)
T COG3910         205 GIE  207 (233)
T ss_pred             Ccc
Confidence            664

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.69  E-value=8.2e-05  Score=71.32  Aligned_cols=70  Identities=29%  Similarity=0.392  Sum_probs=60.0

Q ss_pred             cccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeE
Q psy11928         71 KMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i  141 (184)
                      .++.||||||--++||..|    ..+.|+.+|||-=++||..++..+.++|+++.  .=.|+|||....... +++.
T Consensus      1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~-ad~l 1138 (1163)
T COG1196        1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEA-ADRL 1138 (1163)
T ss_pred             chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHH-HHHH
Confidence            4678999999999998876    56679999999999999999999999999874  459999999877764 5554

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=97.68  E-value=0.0001  Score=68.49  Aligned_cols=52  Identities=17%  Similarity=0.139  Sum_probs=44.8

Q ss_pred             HHHHHhcCCCEEEeeCCCCCC-CHHHHHHHHHHHH---hcCcEEEEEecCHHHHHh
Q psy11928         85 LAELTLNAPDVIILDEPTNNL-DIESIDALADAIN---EYKGGVIIVSHDERLIRD  136 (184)
Q Consensus        85 laral~~~p~illlDEPt~~L-D~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~  136 (184)
                      +.+++..+|+++++|||+.+| |+..+..+.+.++   +.+.+++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            567788999999999999999 7888888777774   457899999999999875

>PF13166 AAA_13: AAA domain

Probab=97.66  E-value=0.00021  Score=65.03  Aligned_cols=67  Identities=28%  Similarity=0.439  Sum_probs=56.5

Q ss_pred             cccCCChhHHHHHHHHHHH--hc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc---C--cEEEEEecCHHHHHh
Q psy11928         71 KMKDLSGGQKARVALAELT--LN-------APDVIILDEPTNNLDIESIDALADAINEY---K--GGVIIVSHDERLIRD  136 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral--~~-------~p~illlDEPt~~LD~~~~~~l~~~l~~~---~--~tiiivsHd~~~~~~  136 (184)
                      +...||.|||.-++||-=|  +.       +..++++|-|-|+||...+..+...|.+.   .  .=||+-|||..|...
T Consensus       497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~  576 (712)
T PF13166_consen  497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKE  576 (712)
T ss_pred             ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHH
Confidence            4689999999999998643  33       67899999999999999999999988766   2  469999999999765


Q ss_pred             h
Q psy11928        137 T  137 (184)
Q Consensus       137 ~  137 (184)
                      +
T Consensus       577 l  577 (712)
T PF13166_consen  577 L  577 (712)
T ss_pred             H
Confidence            4

>KOG0933|consensus

Probab=97.65  E-value=3.3e-05  Score=70.81  Aligned_cols=63  Identities=30%  Similarity=0.483  Sum_probs=51.9

Q ss_pred             ccccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHh-cC-cEEEEEecCHH
Q psy11928         70 IKMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINE-YK-GGVIIVSHDER  132 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~-~~-~tiiivsHd~~  132 (184)
                      ...++||||||-.|+|+..|    ..+++++||||--++||....+.+-.+|+. ++ .-+|+||=--.
T Consensus      1078 eSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKeG 1146 (1174)
T KOG0933|consen 1078 ESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKEG 1146 (1174)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchhh
Confidence            36799999999999887655    456799999999999999999999999986 44 46777775433

>KOG0964|consensus

Probab=97.53  E-value=6.2e-05  Score=68.91  Aligned_cols=71  Identities=31%  Similarity=0.422  Sum_probs=59.7

Q ss_pred             cccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeEE
Q psy11928         71 KMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i~  142 (184)
                      .+.+||||||--|+||..++    -+++++|+||--++||+..+..+-.+|+++.  .-+|.+|-.++.+. .+|+.+
T Consensus      1094 ~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~-vAdKfy 1170 (1200)
T KOG0964|consen 1094 EMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLS-VADKFY 1170 (1200)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHH-HHHhhh
Confidence            46799999999999998874    3459999999999999999999999999874  35777787777775 677765

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.49  E-value=0.00016  Score=57.33  Aligned_cols=43  Identities=23%  Similarity=0.456  Sum_probs=33.8

Q ss_pred             HHhcCCCEEEeeCCCCC------CCHHHHHHHHHHHH----hcCcEEEEEecCH
Q psy11928         88 LTLNAPDVIILDEPTNN------LDIESIDALADAIN----EYKGGVIIVSHDE  131 (184)
Q Consensus        88 al~~~p~illlDEPt~~------LD~~~~~~l~~~l~----~~~~tiiivsHd~  131 (184)
                      +...+|+++++| |+++      +|+.....+++.+.    +.+.|||+++|..
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence            345799999999 7754      68888877777664    4578999999986

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.43  E-value=0.00055  Score=49.80  Aligned_cols=63  Identities=21%  Similarity=0.077  Sum_probs=45.7

Q ss_pred             cCCChhHHHHHHHHHHHhcCCCEEEeeCCCC----------CCCHHHHHHHHHHH---HhcCcEEEEEecCHHHHH
Q psy11928         73 KDLSGGQKARVALAELTLNAPDVIILDEPTN----------NLDIESIDALADAI---NEYKGGVIIVSHDERLIR  135 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~~p~illlDEPt~----------~LD~~~~~~l~~~l---~~~~~tiiivsHd~~~~~  135 (184)
                      ...+.+..+++..+++...+|+++++|||++          +.|......+.++.   ++.+.|+|+++|......
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~  141 (165)
T cd01120          66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK  141 (165)
T ss_pred             CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence            3445566677888999999999999999995          44545455555544   345789999999875543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=97.20  E-value=0.0015  Score=54.84  Aligned_cols=76  Identities=26%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             cCCChhHHHHHHHHHHH---------hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcC---e
Q psy11928         73 KDLSGGQKARVALAELT---------LNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTEC---T  140 (184)
Q Consensus        73 ~~LSgG~kqrv~laral---------~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~---~  140 (184)
                      ...|-||++-+.++.-|         ...++|||||+-++.||..-+..+.+. .+.+.-++++|-+.+.+...-.   +
T Consensus       274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~~~Q~fvT~t~~~~~~~~~~~~~~  352 (363)
T COG1195         274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IELGVQVFVTTTDLEDIDDNLDENAQ  352 (363)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cccCCeEEEEccCHHHhhhhhhccce
Confidence            57899999998888765         457899999999999999999999999 6667767777777777663222   6


Q ss_pred             EEEEeCCeE
Q psy11928        141 LWVIENQTI  149 (184)
Q Consensus       141 i~~l~~g~i  149 (184)
                      ++.+.+|++
T Consensus       353 ~f~V~~g~i  361 (363)
T COG1195         353 MFHVEDGKI  361 (363)
T ss_pred             EEEEeccee
Confidence            777788876

>KOG0996|consensus

Probab=96.97  E-value=0.00067  Score=63.42  Aligned_cols=72  Identities=25%  Similarity=0.367  Sum_probs=57.4

Q ss_pred             ccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeEE
Q psy11928         70 IKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i~  142 (184)
                      +.+.+||||+|-.-+||..++.    +.++++|||--++||..+...+-++|++..  .-+||||=.-+-. .+++|.+
T Consensus      1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnMF-ELa~rLv 1268 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMF-ELANRLV 1268 (1293)
T ss_pred             hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhHH-HHHhhhe
Confidence            4799999999999999888753    469999999999999999999999998763  4577777543333 3567654

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=96.93  E-value=0.0031  Score=58.83  Aligned_cols=67  Identities=22%  Similarity=0.200  Sum_probs=50.9

Q ss_pred             ccCCChhHHHHHHHHHHHhc--CCCEEEeeCC---CCCCCHHHHH-HHHHHHHhc-CcEEEEEecCHHHHHhhcC
Q psy11928         72 MKDLSGGQKARVALAELTLN--APDVIILDEP---TNNLDIESID-ALADAINEY-KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~--~p~illlDEP---t~~LD~~~~~-~l~~~l~~~-~~tiiivsHd~~~~~~~~~  139 (184)
                      ...+|.=|.....++.++-.  ++.++|+|||   |+.+|..+.. .+.+.+.+. +.++|++||..+... +++
T Consensus       664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~-l~~  737 (854)
T PRK05399        664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTE-LEE  737 (854)
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHH-Hhh
Confidence            45678777777888877754  9999999999   9999977743 466777665 478999999966543 444

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=96.92  E-value=0.002  Score=59.81  Aligned_cols=47  Identities=23%  Similarity=0.172  Sum_probs=38.4

Q ss_pred             HhcCCCEEEeeCCCCCCC-HHHHHHHHHHHH---hcCcEEEEEecCHHHHH
Q psy11928         89 TLNAPDVIILDEPTNNLD-IESIDALADAIN---EYKGGVIIVSHDERLIR  135 (184)
Q Consensus        89 l~~~p~illlDEPt~~LD-~~~~~~l~~~l~---~~~~tiiivsHd~~~~~  135 (184)
                      +-.+|.++++|||+..|| +..+..+.+.++   +.+.+++++||+++.+.
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~  682 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID  682 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence            346899999999999999 666777766664   45789999999998765

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.90  E-value=9.1e-05  Score=64.71  Aligned_cols=75  Identities=7%  Similarity=0.026  Sum_probs=51.0

Q ss_pred             hCCCCcccccccccCCChhHHHHHHHH--HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEecCHHH-
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALA--ELTLNAPDVIILDEPTNNLDIESIDALADAI---NEYKGGVIIVSHDERL-  133 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~la--ral~~~p~illlDEPt~~LD~~~~~~l~~~l---~~~~~tiiivsHd~~~-  133 (184)
                      .++++...+ +.+..+|+|++|||.|+  .++...|+..          ...++.+.+++   ++.+.|+|++||+.+. 
T Consensus       102 ~~~l~~~l~-~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~  170 (484)
T TIGR02655       102 GFDLSALIE-RINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEY  170 (484)
T ss_pred             cCCHHHHHH-HHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccc
Confidence            344444333 35678999999999999  5555555433          34555555554   4558899999998764 


Q ss_pred             --------HHhhcCeEEEEe
Q psy11928        134 --------IRDTECTLWVIE  145 (184)
Q Consensus       134 --------~~~~~~~i~~l~  145 (184)
                              .+.+||.|+.|+
T Consensus       171 ~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       171 GPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             cccccCCceeEeeeeEEEEE
Confidence                    256888888775

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG0018|consensus

Probab=96.83  E-value=0.0011  Score=61.42  Aligned_cols=72  Identities=31%  Similarity=0.331  Sum_probs=58.9

Q ss_pred             ccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEE
Q psy11928         70 IKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      ++..+||||+|--.+||..++-    ++++.+|||--++||..+...+..+|+.-+.-+|+||=-.++... +|-.+
T Consensus      1047 r~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr~~~~Q~IvISLK~~~y~k-adaLV 1122 (1141)
T KOG0018|consen 1047 RPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIRSSNFQFIVISLKEEFYQK-ADALV 1122 (1141)
T ss_pred             CchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHhcCCceEEEEeccHHHhhh-hhcee
Confidence            4678999999999999998853    469999999999999999999999999666667777766666654 44443

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.78  E-value=0.01  Score=52.40  Aligned_cols=73  Identities=22%  Similarity=0.273  Sum_probs=59.5

Q ss_pred             ccCCChhHHHHHHHHHH--HhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCeEEEEe
Q psy11928         72 MKDLSGGQKARVALAEL--TLNA--PDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECTLWVIE  145 (184)
Q Consensus        72 ~~~LSgG~kqrv~lara--l~~~--p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~i~~l~  145 (184)
                      .+..||||--|++||.-  ++..  .+.|++||--.|+--.....+-+.|++.+  .-|+.|||-+..+.. ++.-+.+.
T Consensus       429 ~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~-ad~H~~V~  507 (557)
T COG0497         429 AKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAM-ADTHFLVE  507 (557)
T ss_pred             HhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhh-hcceEEEE
Confidence            36789999999999874  3433  56999999999999999999999999885  469999999999875 45544443

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=96.62  E-value=0.0046  Score=53.44  Aligned_cols=50  Identities=16%  Similarity=0.110  Sum_probs=42.5

Q ss_pred             CC--CCCCCHHHHHHHHHHHHhc-----Cc-----EEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q psy11928        100 EP--TNNLDIESIDALADAINEY-----KG-----GVIIVSHDERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       100 EP--t~~LD~~~~~~l~~~l~~~-----~~-----tiiivsHd~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      ||  |+|+|+.....+.+++.+.     |.     ||++.|||+++  .+|+++..+.+|+++.
T Consensus       273 e~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivl  334 (438)
T PRK07721        273 EPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVL  334 (438)
T ss_pred             CCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEE
Confidence            64  7899999999999888764     33     89999999995  7899999999999864

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=96.60  E-value=0.0033  Score=52.28  Aligned_cols=41  Identities=20%  Similarity=0.392  Sum_probs=35.7

Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         96 IILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        96 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      +++|||+.+||+.+...+.+.+.+.  +.++|++||+.+.+..
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~  158 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLP  158 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChH
Confidence            5578999999999999999999886  4689999999887664

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=96.59  E-value=0.0059  Score=56.65  Aligned_cols=49  Identities=18%  Similarity=0.159  Sum_probs=40.0

Q ss_pred             HHhcCCCEEEeeCCCCCCC-HHHHHHHHHHHH---hcCcEEEEEecCHHHHHh
Q psy11928         88 LTLNAPDVIILDEPTNNLD-IESIDALADAIN---EYKGGVIIVSHDERLIRD  136 (184)
Q Consensus        88 al~~~p~illlDEPt~~LD-~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~  136 (184)
                      .+..+|.++++|||...|| +...+.+.+.++   +.+.+++++||+++.+..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~  690 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK  690 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence            3467899999999999999 777767766664   457899999999988654

>TIGR00152 dephospho-CoA kinase

Probab=96.59  E-value=0.0015  Score=49.82  Aligned_cols=69  Identities=17%  Similarity=0.132  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHH--HHhhcCeEEEEeCC
Q psy11928         77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERL--IRDTECTLWVIENQ  147 (184)
Q Consensus        77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~--~~~~~~~i~~l~~g  147 (184)
                      .|+-+|..||.++..+|+.+..+|  +.+||..++.+.+.+.+.   +.+|++.+|.+.+  +...||.++++..+
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            388999999999999999988887  789999999999888754   3589999999865  67789999988765

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=96.37  E-value=0.017  Score=49.85  Aligned_cols=74  Identities=16%  Similarity=0.173  Sum_probs=56.5

Q ss_pred             cccCCChhHHHHHHHHHHHh-------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         71 KMKDLSGGQKARVALAELTL-------NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~-------~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      ..++.|.|+|+|+..+.+.+       .++-++++|+||++.|+.  .++...+.+.   |.+..+.||...++++.+. 
T Consensus       218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~-  294 (432)
T PRK06793        218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK-  294 (432)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc-
Confidence            56899999999999998877       789999999999999986  5554455443   4578888887666666443 


Q ss_pred             EEEEeCCeEE
Q psy11928        141 LWVIENQTIE  150 (184)
Q Consensus       141 i~~l~~g~i~  150 (184)
                         .+.|.+.
T Consensus       295 ---~~~GSiT  301 (432)
T PRK06793        295 ---TQKGSIT  301 (432)
T ss_pred             ---CCCcceE
Confidence               3577663

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.32  E-value=0.007  Score=46.63  Aligned_cols=54  Identities=28%  Similarity=0.267  Sum_probs=39.9

Q ss_pred             HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEE
Q psy11928         84 ALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        84 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      ++.+++..+|+++++|||.   |.+....+.+.. ..|..++.++|..+... ..+|++
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~  119 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAK-TIDRII  119 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHH-HHhHHH
Confidence            5778999999999999996   677666555544 35788999999876543 344543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.09  E-value=0.009  Score=49.24  Aligned_cols=72  Identities=22%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCc-EEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG-GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .-.+..+|-.+|+++++|||.+   .+. ..+.+.+. .|. +++.++|..+.. ...+|+..+..|++...+.+.+..
T Consensus       208 ~~~l~~~Lr~~pd~ii~gE~r~---~e~-~~~l~a~~-~g~~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       208 KDLLQSCLRMRPDRIILGELRG---DEA-FDFIRAVN-TGHPGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             HHHHHHHhcCCCCeEEEeccCC---HHH-HHHHHHHh-cCCCeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHH
Confidence            3467778999999999999996   232 22333333 343 679999998854 457888777777664333333333

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG3044 Predicted ATPase of the ABC class [General function prediction only]

Probab=96.04  E-value=0.048  Score=46.66  Aligned_cols=79  Identities=19%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH-------------HHHHHHHhc-C--cEEEEEecCHHHHH
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID-------------ALADAINEY-K--GGVIIVSHDERLIR  135 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~-------------~l~~~l~~~-~--~tiiivsHd~~~~~  135 (184)
                      ...-||-+.+-..|=+++=.+.+.+|.||-+++-..-.+.             .+.+.+.+. +  .++|+||--...+.
T Consensus       318 tgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddll  397 (554)
T COG3044         318 TGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLL  397 (554)
T ss_pred             cCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhh
Confidence            4678999999999999999999999999999876553332             233333333 3  68999999888888


Q ss_pred             hhcCeEEEEeCCeEE
Q psy11928        136 DTECTLWVIENQTIE  150 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~  150 (184)
                      ..+||+++|++.+-.
T Consensus       398 a~aDRaIvMeDhrpk  412 (554)
T COG3044         398 AVADRAIVMEDHRPK  412 (554)
T ss_pred             hhcceEEEecccCcc
Confidence            899999999998653

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.86  E-value=0.032  Score=47.99  Aligned_cols=78  Identities=14%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-------------------HHhcCcEEEEEecCHH
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA-------------------INEYKGGVIIVSHDER  132 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-------------------l~~~~~tiiivsHd~~  132 (184)
                      ..+=||-.-|-..|.-|+=...++||+||=|++=..-.++..++.                   ..++|.+.|+|+--..
T Consensus       320 T~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg  399 (448)
T PF09818_consen  320 TENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG  399 (448)
T ss_pred             ccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch
Confidence            467899999999999999999999999999997554443333322                   2345777777777777


Q ss_pred             HHHhhcCeEEEEeCCeE
Q psy11928        133 LIRDTECTLWVIENQTI  149 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i  149 (184)
                      .....+|+|+.|++-+.
T Consensus       400 dy~~vAD~Vi~Md~Y~~  416 (448)
T PF09818_consen  400 DYFDVADRVIMMDEYRP  416 (448)
T ss_pred             hhHhhCCEEEEecCccc
Confidence            77788999999988654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=95.62  E-value=0.032  Score=48.30  Aligned_cols=63  Identities=14%  Similarity=0.230  Sum_probs=42.6

Q ss_pred             cCCCEEEeeCCCCCCCHHH-HHHHHHHHHh---cCcEEEEEe-cCHHHHHhhcCeEE-EEeCCeEEEec
Q psy11928         91 NAPDVIILDEPTNNLDIES-IDALADAINE---YKGGVIIVS-HDERLIRDTECTLW-VIENQTIEEID  153 (184)
Q Consensus        91 ~~p~illlDEPt~~LD~~~-~~~l~~~l~~---~~~tiiivs-Hd~~~~~~~~~~i~-~l~~g~i~~~~  153 (184)
                      .+|++|++|||...+|... ...+...++.   .++.+|++| |++..+..+.+++. -+..|.++.+.
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~  261 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE  261 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeC
Confidence            4799999999999887653 4566666654   356677765 88888777666653 24456555443

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.28  E-value=0.051  Score=47.88  Aligned_cols=67  Identities=22%  Similarity=0.385  Sum_probs=52.7

Q ss_pred             cccC-CChhHHHHHHHHHHH---hcC-----CCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928         71 KMKD-LSGGQKARVALAELT---LNA-----PDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        71 ~~~~-LSgG~kqrv~laral---~~~-----p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~  137 (184)
                      ..++ ||.|++.-++++--|   -.+     -+++++|.|.+++|..........++..   ++-|++-||+-.|+..+
T Consensus       525 ~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~rd~  603 (758)
T COG4694         525 LVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFYRDI  603 (758)
T ss_pred             cccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceehHHH
Confidence            3555 999999988876543   333     4688999999999999988888888754   57899999997776543

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.25  E-value=0.051  Score=49.30  Aligned_cols=73  Identities=26%  Similarity=0.315  Sum_probs=55.0

Q ss_pred             cCCChhHHHHHH---HHHHHhc--------CC--CEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecC--HHHHHhh
Q psy11928         73 KDLSGGQKARVA---LAELTLN--------AP--DVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD--ERLIRDT  137 (184)
Q Consensus        73 ~~LSgG~kqrv~---laral~~--------~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd--~~~~~~~  137 (184)
                      ..+|||||++++   ||.+|..        .|  ..+||||.|+-=|+......+..++++|.-.+++|-.  +..+..+
T Consensus       989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~fglh~v~iTPlk~I~~l~~~ 1068 (1104)
T COG4913         989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREFGLHAVFITPLKEIRLLRHH 1068 (1104)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHcCceEEEechHHHHHHHHhh
Confidence            689999999975   5555532        22  4689999999999999999999999999888888853  4445554


Q ss_pred             cCeEEEEe
Q psy11928        138 ECTLWVIE  145 (184)
Q Consensus       138 ~~~i~~l~  145 (184)
                      ....++++
T Consensus      1069 v~S~ivVh 1076 (1104)
T COG4913        1069 VRSAIVVH 1076 (1104)
T ss_pred             ccceEEEe
Confidence            44444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.98  E-value=0.02  Score=56.20  Aligned_cols=61  Identities=23%  Similarity=0.356  Sum_probs=46.7

Q ss_pred             ccCCChhHHHHHHHHHHHh--------cC--------C-CEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEe-cCHHH
Q psy11928         72 MKDLSGGQKARVALAELTL--------NA--------P-DVIILDEPTNNLDIESIDALADAINEYKGGVIIVS-HDERL  133 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~--------~~--------p-~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivs-Hd~~~  133 (184)
                      .+.||||||..+.....++        ..        | .+|+|||. +++|..+...+++++..++.-+||+| +++.-
T Consensus      1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~~q~i~~tP~~~~~ 1441 (1486)
T PRK04863       1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLDMQLLIAAPENISP 1441 (1486)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCcEEEechhhccC
Confidence            6899999998877666554        21        2 34699999 99999999999999999887655555 44443

>PF13514 AAA_27: AAA domain

Probab=94.93  E-value=0.089  Score=50.68  Aligned_cols=66  Identities=29%  Similarity=0.360  Sum_probs=51.9

Q ss_pred             cccCCChhHHHHHHHH------HHH-hcCCCE-EEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHh
Q psy11928         71 KMKDLSGGQKARVALA------ELT-LNAPDV-IILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRD  136 (184)
Q Consensus        71 ~~~~LSgG~kqrv~la------ral-~~~p~i-lllDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~  136 (184)
                      ++..||.|.+=-+.||      ..+ ...+++ +|+|+||-+.|..-....+++|.++.  .=||+=||+...+.-
T Consensus      1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~~ 1097 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVEL 1097 (1111)
T ss_pred             eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHHH
Confidence            6789999998655554      444 345555 99999999999999999999998874  458888888887763

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=94.61  E-value=0.12  Score=48.40  Aligned_cols=77  Identities=13%  Similarity=0.160  Sum_probs=46.6

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCC---CCCCCHHH-HHHHHHHHHh-cCcEEEEEecCH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEP---TNNLDIES-IDALADAINE-YKGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEP---t~~LD~~~-~~~l~~~l~~-~~~tiiivsHd~  131 (184)
                      ++.++|-.+.... --+.++.-|++-..|.+ -+.++.++|+||+   |+.+|..+ ...+.+.+.+ .+..++++||..
T Consensus       638 Iftrig~~d~i~~-g~STF~~Em~e~a~IL~-~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~  715 (840)
T TIGR01070       638 IFTRIGASDDLAS-GRSTFMVEMTEAANILH-NATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYF  715 (840)
T ss_pred             EEEecCcccchhc-CcchHHHHHHHHHHHHh-hCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCch
Confidence            3444454433221 22334333443333322 3678999999999   66666666 3446677766 577899999998


Q ss_pred             HHHH
Q psy11928        132 RLIR  135 (184)
Q Consensus       132 ~~~~  135 (184)
                      +...
T Consensus       716 eL~~  719 (840)
T TIGR01070       716 ELTA  719 (840)
T ss_pred             HHHH
Confidence            7654

>PF00488 MutS_V: MutS domain V C-terminus

Probab=93.95  E-value=0.3  Score=38.71  Aligned_cols=64  Identities=20%  Similarity=0.146  Sum_probs=39.6

Q ss_pred             cCCCh--hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH----HHHHHHh-cCcEEEEEecCHHHHHh
Q psy11928         73 KDLSG--GQKARVALAELTLNAPDVIILDEPTNNLDIESIDA----LADAINE-YKGGVIIVSHDERLIRD  136 (184)
Q Consensus        73 ~~LSg--G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~----l~~~l~~-~~~tiiivsHd~~~~~~  136 (184)
                      ..+|.  .|-+++.=+.--+.+..++|+||+..|=++.....    +.+.|.+ .+..++++||+.+....
T Consensus       101 ~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~  171 (235)
T PF00488_consen  101 SGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL  171 (235)
T ss_dssp             TSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred             cccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence            44555  33333333333356788999999999999976543    4455555 46789999999887543

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=93.92  E-value=0.55  Score=32.23  Aligned_cols=59  Identities=37%  Similarity=0.333  Sum_probs=45.6

Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH---------HHHhcCcEEEEEecC
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD---------AINEYKGGVIIVSHD  130 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~---------~l~~~~~tiiivsHd  130 (184)
                      ....++++..+..+.++-..+|+++++||+..-.+.........         ........+|.++|.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            45677888888888888888899999999999999987765543         112235688888884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.18  E-value=0.25  Score=41.32  Aligned_cols=45  Identities=29%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCH
Q psy11928         83 VALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDE  131 (184)
Q Consensus        83 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~  131 (184)
                      -++.++|-++|+++++||+.   |+++.....+.. ..|.+++.+.|-.
T Consensus       186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~  230 (343)
T TIGR01420       186 NALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTN  230 (343)
T ss_pred             HHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCC
Confidence            34778899999999999997   888877655543 4477888888973

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=92.95  E-value=0.36  Score=36.04  Aligned_cols=56  Identities=13%  Similarity=0.250  Sum_probs=43.0

Q ss_pred             cCCCEEEeeCCCCCCC--HHHHHHHHHHHHhc--CcEEEEEecC-HHHHHhhcCeEEEEeC
Q psy11928         91 NAPDVIILDEPTNNLD--IESIDALADAINEY--KGGVIIVSHD-ERLIRDTECTLWVIEN  146 (184)
Q Consensus        91 ~~p~illlDEPt~~LD--~~~~~~l~~~l~~~--~~tiiivsHd-~~~~~~~~~~i~~l~~  146 (184)
                      .+.++++|||-...++  ....+.+.++|++.  +..+|++.++ ...+...+|-|-.|+.
T Consensus        94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~  154 (159)
T cd00561          94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE  154 (159)
T ss_pred             CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence            5689999999988644  45677888999765  3589999998 4556678888877654

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK04296 thymidine kinase; Provisional

Probab=92.63  E-value=1.2  Score=34.01  Aligned_cols=55  Identities=20%  Similarity=0.221  Sum_probs=41.9

Q ss_pred             hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecC---------H-HHHHhhcCeEEEEe
Q psy11928         90 LNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD---------E-RLIRDTECTLWVIE  145 (184)
Q Consensus        90 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd---------~-~~~~~~~~~i~~l~  145 (184)
                      ..+++++++||- --|+......+.+.++..+.+||++.++         . ..+..++|.|..|+
T Consensus        76 ~~~~dvviIDEa-q~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~  140 (190)
T PRK04296         76 GEKIDCVLIDEA-QFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK  140 (190)
T ss_pred             CCCCCEEEEEcc-ccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence            347899999999 4477665666777777789999999999         2 34556788887764

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=92.37  E-value=0.32  Score=43.98  Aligned_cols=48  Identities=27%  Similarity=0.421  Sum_probs=38.3

Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE  119 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  119 (184)
                      +...++.+|+..... ..+.++|||                +|++|| +..||+..+..+.+.+.+
T Consensus       244 a~~~l~~~gl~~~~~-g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       244 ARRDLAETGVPEPKT-GLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HHHHHHHcCCCchhc-CchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            344566777765554 478889998                999999 799999999999999865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=91.53  E-value=0.074  Score=41.53  Aligned_cols=54  Identities=9%  Similarity=0.067  Sum_probs=35.1

Q ss_pred             CCCEEEeeCCCCCC--CHHH-HH---HHHHHHHhcCcEEEEEecCHH--------HHHhhcCeEEEEe
Q psy11928         92 APDVIILDEPTNNL--DIES-ID---ALADAINEYKGGVIIVSHDER--------LIRDTECTLWVIE  145 (184)
Q Consensus        92 ~p~illlDEPt~~L--D~~~-~~---~l~~~l~~~~~tiiivsHd~~--------~~~~~~~~i~~l~  145 (184)
                      +|+.++.|-|+.-+  ++.. ++   .+...+++.+.|+|+++|...        .++.+||.++.++
T Consensus       121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            57778888776542  3322 22   344455677899999999543        2456788888776

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=91.14  E-value=0.51  Score=35.41  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=42.7

Q ss_pred             HHHHHhhCCCCc-ccccccccCCChhHHHHHH--HHHHHhc-CCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928         54 ARKQLGTFGLAG-HAHTIKMKDLSGGQKARVA--LAELTLN-APDVIILDEPTNNLDIESIDALADAINE  119 (184)
Q Consensus        54 ~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrv~--laral~~-~p~illlDEPt~~LD~~~~~~l~~~l~~  119 (184)
                      +.+.++..++.- ...+ ++..+|+|++|++.  +.+.+-. +++++    |+|++|..+.+.+.+.+.+
T Consensus       127 i~~~l~~~~~~~iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~  191 (196)
T PRK00454        127 MIEWLKEYGIPVLIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAK  191 (196)
T ss_pred             HHHHHHHcCCcEEEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHH
Confidence            345566666542 3334 68889999999877  5555543 34443    9999999999999888865

>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]

Probab=90.63  E-value=0.45  Score=42.59  Aligned_cols=56  Identities=18%  Similarity=0.302  Sum_probs=45.5

Q ss_pred             HHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHh
Q psy11928         81 ARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRD  136 (184)
Q Consensus        81 qrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~  136 (184)
                      |.++....+    ...|.+||.+||=++|-|.....++++++...  .-+|++||..+++..
T Consensus       286 ~~l~~~~~~~~~~~~r~~ILLiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~  347 (581)
T COG3593         286 QLLQAIGSLELERVARPNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSL  347 (581)
T ss_pred             HHHHHHhHhhhhhhcccceEEEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccc
Confidence            444444443    34455999999999999999999999999887  789999999999874

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=90.40  E-value=0.51  Score=36.71  Aligned_cols=54  Identities=19%  Similarity=0.145  Sum_probs=36.9

Q ss_pred             cCCCEEEeeCCCCC------CCHHHHHHHHHHH---HhcCcEEEEEecC---------HHHHHhhcCeEEEEe
Q psy11928         91 NAPDVIILDEPTNN------LDIESIDALADAI---NEYKGGVIIVSHD---------ERLIRDTECTLWVIE  145 (184)
Q Consensus        91 ~~p~illlDEPt~~------LD~~~~~~l~~~l---~~~~~tiiivsHd---------~~~~~~~~~~i~~l~  145 (184)
                      .+++.+++| |.+.      .|...+..+.+++   ++.+.|++++||.         ...++.+||.+++++
T Consensus       106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            468999999 5443      3444455555544   4567899999995         234677889988885

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK13764 ATPase; Provisional

Probab=90.18  E-value=1.4  Score=39.78  Aligned_cols=59  Identities=25%  Similarity=0.312  Sum_probs=44.4

Q ss_pred             HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------------CHHHHHhhcCeEEEEeCCeEE
Q psy11928         88 LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSH---------------DERLIRDTECTLWVIENQTIE  150 (184)
Q Consensus        88 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH---------------d~~~~~~~~~~i~~l~~g~i~  150 (184)
                      +|..+||++++||.-..   ++...+ ..+...+..++-+-|               ++..+..++|+++.+++|++.
T Consensus       320 lLR~rPD~IivGEiRd~---Et~~~~-~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~  393 (602)
T PRK13764        320 LLLVRPDYTIYDEMRKT---EDFKIF-ADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVS  393 (602)
T ss_pred             HHhhCCCEEEECCCCCH---HHHHHH-HHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEE
Confidence            47889999999999843   333222 233344666777889               888888999999999999883

>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated

Probab=89.99  E-value=0.99  Score=34.32  Aligned_cols=65  Identities=8%  Similarity=0.110  Sum_probs=48.1

Q ss_pred             HHHHHHHh--cCCCEEEeeCCCCCCCH--HHHHHHHHHHHhcC--cEEEEEecC-HHHHHhhcCeEEEEeCC
Q psy11928         83 VALAELTL--NAPDVIILDEPTNNLDI--ESIDALADAINEYK--GGVIIVSHD-ERLIRDTECTLWVIENQ  147 (184)
Q Consensus        83 v~laral~--~~p~illlDEPt~~LD~--~~~~~l~~~l~~~~--~tiiivsHd-~~~~~~~~~~i~~l~~g  147 (184)
                      ...|+..+  .+.++++|||-...++.  ...+.+.++|++..  ..||++-++ ...+...+|-|-.|+.+
T Consensus       104 ~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~~~  175 (178)
T PRK07414        104 WQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQITELRRS  175 (178)
T ss_pred             HHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeeeeeecc
Confidence            34444444  45799999999987765  35678888887653  479999988 55566789988887665

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=89.78  E-value=1.3  Score=38.00  Aligned_cols=53  Identities=23%  Similarity=0.324  Sum_probs=39.1

Q ss_pred             HHHHHHhcCCCEEEeeC----------CCCCCCHHHHHHHHHHHHhc-------CcEEEEEecCHHHHHh
Q psy11928         84 ALAELTLNAPDVIILDE----------PTNNLDIESIDALADAINEY-------KGGVIIVSHDERLIRD  136 (184)
Q Consensus        84 ~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~~  136 (184)
                      .+..|....|.|+++||          +.++.|......+.+++...       +..||++||.++.+..
T Consensus       230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp  299 (398)
T PTZ00454        230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP  299 (398)
T ss_pred             HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence            45556678999999999          55677877777777777643       2469999998876643

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=87.01  E-value=1.5  Score=33.73  Aligned_cols=64  Identities=20%  Similarity=0.248  Sum_probs=47.2

Q ss_pred             HHHHHHHh--cCCCEEEeeCCCCCCCH--HHHHHHHHHHHhcC--cEEEEEecC-HHHHHhhcCeEEEEeC
Q psy11928         83 VALAELTL--NAPDVIILDEPTNNLDI--ESIDALADAINEYK--GGVIIVSHD-ERLIRDTECTLWVIEN  146 (184)
Q Consensus        83 v~laral~--~~p~illlDEPt~~LD~--~~~~~l~~~l~~~~--~tiiivsHd-~~~~~~~~~~i~~l~~  146 (184)
                      ...|+..+  .+.++++|||-+..++.  ...+.+.++|.+..  ..||++-++ ...+...+|.|-.|+.
T Consensus       104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~  174 (191)
T PRK05986        104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP  174 (191)
T ss_pred             HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence            44455544  55799999999988775  35678888887653  479999888 4556678898877754

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=86.68  E-value=1.5  Score=37.09  Aligned_cols=40  Identities=18%  Similarity=0.316  Sum_probs=33.1

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928         92 APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD  136 (184)
Q Consensus        92 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~  136 (184)
                      .+|++++|=|-+|++....+.+.+     ...||+||||+..+.+
T Consensus       288 ~~D~v~lDPPR~G~~~~~l~~l~~-----~~~ivyvSC~p~tlar  327 (362)
T PRK05031        288 NFSTIFVDPPRAGLDDETLKLVQA-----YERILYISCNPETLCE  327 (362)
T ss_pred             CCCEEEECCCCCCCcHHHHHHHHc-----cCCEEEEEeCHHHHHH
Confidence            589999999999999887777654     3789999999977544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		2e-13
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		2e-13
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		2e-13
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		1e-07
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-07
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-07
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		5e-07
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		9e-07
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		9e-07
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		1e-06
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		2e-06
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		4e-06
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		4e-06
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		7e-06
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		9e-06
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		1e-05
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		1e-05
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		1e-05
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		1e-05
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-05
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-05
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		2e-05
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		2e-05
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		2e-05
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		2e-05
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		3e-05
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		4e-05
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		4e-05
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		5e-05
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		5e-05
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		5e-05
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		6e-05
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		7e-05
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		8e-05
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		8e-05
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		8e-05
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		8e-05
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		8e-05
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		9e-05
1g29_1	372	Malk Length = 372		9e-05
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		1e-04
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		2e-04
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		2e-04
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		2e-04
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		2e-04
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		2e-04
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		3e-04
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		3e-04
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		3e-04
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		3e-04
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		3e-04
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		5e-04
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		6e-04
1yqt_A	538	Rnase-L Inhibitor Length = 538		6e-04

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E  + +L  FG       + +  LSGG K ++ALA   L   D+++LDEPTN+LD  ++ 
Sbjct: 526 EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 112 ALADAINEYKGGVIIVSHDERLIRDTECTLWV-IENQTIEEIDGDFDDYRKE 162
            L + +N      I +SHD   + D  C   +  E   + +  G+F ++ K+
Sbjct: 586 WLVNYLNTCGITSITISHDSVFL-DNVCEYIINYEGLKLRKYKGNFTEFVKK 636

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E  + +L  FG         +  LSGG K ++ALA   L   D+++LDEPTN+LD  ++ 
Sbjct: 526 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 112 ALADAINEYKGGVIIVSHDERLIRDTECTLWV-IENQTIEEIDGDFDDYRKELLEA 166
            L + +N      I +SHD   + D  C   +  E   + +  G+F ++ K+   A
Sbjct: 586 WLVNYLNTCGITSITISHDSVFL-DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAA 640

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E  + +L  FG         +  LSGG K ++ALA   L   D+++LDEPTN+LD  ++ 
Sbjct: 520 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVA 579
Query: 112 ALADAINEYKGGVIIVSHDERLIRDTECTLWV-IENQTIEEIDGDFDDYRKELLEA 166
            L + +N      I +SHD   + D  C   +  E   + +  G+F ++ K+   A
Sbjct: 580 WLVNYLNTCGITSITISHDSVFL-DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAA 634

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 12  GELKKNHRLR--IGRFDQHSGEHLTAEETPAEYLQRLFNL-----PYEKARKQLGTFGLA 64
           GE KK + +R  IG   Q+  +   AE    E    + N      P    +K +   GL 
Sbjct: 68  GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD 127
Query: 65  GHAHTIKMKD-LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK-- 121
             +   ++   LSGG+K RVA+A + ++ PD++ILDEP   LD E    L   + ++K  
Sbjct: 128 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187
Query: 122 -GGVIIVSHD-ERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
              VI++SHD E +I   +  + + + + +      FD  R E LE
Sbjct: 188 GKTVILISHDIETVINHVDRVVVLEKGKKV------FDGTRMEFLE 227

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 12  GELKKNHRLR--IGRFDQHSGEHLTAEETPAEYLQRLFNL-----PYEKARKQLGTFGLA 64
           GE KK + +R  IG   Q+  +   AE    E    + N      P    +K +   GL 
Sbjct: 70  GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD 129
Query: 65  GHAHTIKMKD-LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG- 122
             +   ++   LSGG+K RVA+A + ++ PD++ILDEP   LD E    L   + ++K  
Sbjct: 130 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 189
Query: 123 --GVIIVSHD-ERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
              VI++SHD E +I   +  + + + + +      FD  R E LE
Sbjct: 190 GKTVILISHDIETVINHVDRVVVLEKGKKV------FDGTRMEFLE 229

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 75   LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
            LSGGQK R+A+A   +  P +++LDE T+ LD ES   + +A++  + G   I+++H   
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLN 1277
Query: 133  LIRDTECTLWVIENQTIEE 151
             + + +C + V+ N TI E
Sbjct: 1278 TVMNADC-IAVVSNGTIIE 1295

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E+    L   GL G   + K  +LSGG++ RVA+A    N P ++  DEPT NLD  +  
Sbjct: 119 ERGEYLLSELGL-GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 112 ALAD---AINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEI 152
            + D    INE    +++V+H+  L   T  TL + + + + EI
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEI 221

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 71   KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVS 128
            K   LSGGQK R+A+A   +  P +++LDE T+ LD ES   + +A+++ + G   I+++
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIA 1227
Query: 129  HDERLIRDTECTLWVIENQTIEE 151
            H    I++ +  + VI+N  ++E
Sbjct: 1228 HRLSTIQNADLIV-VIQNGKVKE 1249

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 71   KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVS 128
            K   LSGGQK R+A+A   +  P +++LDE T+ LD ES   + +A+++ + G   I+++
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIA 1227
Query: 129  HDERLIRDTECTLWVIENQTIEE 151
            H    I++ +  + VI+N  ++E
Sbjct: 1228 HRLSTIQNADLIV-VIQNGKVKE 1249

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAINEYKGG-VII 126
           K   LSGGQ+ RVA+A    N P +I+ DEPT  LD    E I  L   +NE  G  V++
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVV 201
Query: 127 VSHDERLIRDTECTLWVIENQT-IEEIDGDFDD 158
           V+HD  + R  E  +++ + +   EE    FDD
Sbjct: 202 VTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 10/146 (6%)
Query: 19  RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGHAHTIKM 72
           R R+    QH     H+T  E   E   ++  L      E+A K L   G+   A     
Sbjct: 92  RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP 151
Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID---ALADAINEYKGGVIIVSH 129
             LSGGQ+ RV++A      PDV++ DEPT+ LD E +     +   + E    +++V+H
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
Query: 130 DERLIRDTECTLWVIENQTIEEIDGD 155
           +    R     +  +    IEE +GD
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEE-EGD 236

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAINEYKGG-VII 126
           K   LSGGQ+ RVA+A    N P +I+ D+PT  LD    E I  L   +NE  G  V++
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 127 VSHDERLIRDTECTLWVIENQT-IEEIDGDFDD 158
           V+HD  + R  E  +++ + +   EE    FDD
Sbjct: 202 VTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDE 131
            LSGGQ+ RVA+A   L    V+ILDE T+ LD ES  A+  A++E +    V++++H  
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRL 539
Query: 132 RLIRDTECTLWVIENQTIEE 151
             I   +  L V E + IE 
Sbjct: 540 STIEQADEILVVDEGEIIER 559

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GVIIVSHDER 132
           LSGGQK R+++A + LN P ++ILDE T+ LD+ES   + +A++        +IV+H   
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 133 LIRDTECTLWVIENQTIEE 151
            I   +  + VIEN  I E
Sbjct: 538 TITHAD-KIVVIENGHIVE 555

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI---ESIDALADAINEYKGG-VII 126
           K   LSGGQ+ RVA+A    N P +I+ D+PT  LD    E I  L   +NE  G  V++
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 127 VSHDERLIRDTECTLWVIENQT-IEEIDGDFDD 158
           V+HD  + R  E  +++ + +   EE    FDD
Sbjct: 202 VTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQK R+A+A   L  P +++LDE T+ LD E+   + +A++    G  V++++H   
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLS 574
Query: 133 LIRD 136
            I++
Sbjct: 575 TIKN 578

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDE 131
            SGG+K R  + ++ +  P++ ILDE  + LDI+++  +AD +N  + G    IIV+H +
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224
Query: 132 RLI 134
           R++
Sbjct: 225 RIL 227

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDE 131
            SGG+K R  + ++ +  P++ ILDE  + LDI+++  +AD +N  + G    IIV+H +
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 205
Query: 132 RLI 134
           R++
Sbjct: 206 RIL 208

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQK R+A+A   L  P +++LDE T+ LD E+   + +A++    G  V++++H   
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543
Query: 133 LIRD 136
            I++
Sbjct: 544 TIKN 547

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GV--IIVS 128
           ++LSGGQ+ RVALA   +  P +++LDEP +NLD    D+    + E +   GV  ++VS
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 129 HD 130
           HD
Sbjct: 199 HD 200

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 18/134 (13%)
Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES-- 109
           ++ +K L   GL+G A    + +LSGGQK R+A+A +       + LDEP + LD  S  
Sbjct: 119 KRIKKVLELVGLSGLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 110 --IDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTI-------EEIDGDFDD-- 158
                L    NE K G+I+V+H+   + D +  L  I N TI       E ++ +FDD  
Sbjct: 178 EIFQVLESLKNEGK-GIILVTHELEYLDDMDFIL-HISNGTIDFCGSWEEFVEREFDDVE 235
Query: 159 --YRKELLEALGEV 170
             ++ +L +  G++
Sbjct: 236 IPFKWKLWKKCGKI 249

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   +N P ++I DE T+ LD ES   +   +++   G  VII++H   
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 201
Query: 133 LIRDTECTLWVIENQTIEE 151
            +++ +  + + + + +E+
Sbjct: 202 TVKNADRIIVMEKGKIVEQ 220

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   +N P ++I DE T+ LD ES   +   +++   G  VII++H   
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 201
Query: 133 LIRDTECTLWVIENQTIEE 151
            +++ +  + + + + +E+
Sbjct: 202 TVKNADRIIVMEKGKIVEQ 220

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   +N P ++I DE T+ LD ES   +   +++   G  VII++H   
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199
Query: 133 LIRDTECTLWVIENQTIEE 151
            +++ +  + + + + +E+
Sbjct: 200 TVKNADRIIVMEKGKIVEQ 218

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   +N P ++I DE T+ LD ES   +   +++   G  VII++H   
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205
Query: 133 LIRDTECTLWVIENQTIEE 151
            +++ +  + + + + +E+
Sbjct: 206 TVKNADRIIVMEKGKIVEQ 224

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHD 130
           LSGGQ+ RVA+A   +  PDV+++DEP +NLD +   A+   I     + K   I V+HD
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
Query: 131 E 131
           +
Sbjct: 203 Q 203

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHD 130
           LSGGQ+ RVA+A   +  PDV+++DEP +NLD +   A+   I     + K   I V+HD
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
Query: 131 E 131
           +
Sbjct: 202 Q 202

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 48  NLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN 103
           N P ++ +++    L   GL G  H     +LSGGQK RVA+A    + P V++ DE T+
Sbjct: 111 NTPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 104 NLD---IESIDALADAINEYKG-GVIIVSHDERLI-RDTECTLWVIENQTIEE 151
            LD     SI  L   IN   G  +++++H+  ++ R  +C   +   + IE+
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   +N P ++I D+ T+ LD ES   +   +++   G  VII++H   
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205
Query: 133 LIRDTECTLWVIENQTIEE 151
            +++ +  + + + + +E+
Sbjct: 206 TVKNADRIIVMEKGKIVEQ 224

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
           LSGGQ+ RVA+A   +  P+V++LDEP +NLD    +E    L     E     + V+HD
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 131 ERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSI 176
           +         + VI    I ++    + Y K   + +G  + NP +
Sbjct: 194 QAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLGNPPM 239

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   L    ++ILDE T+ LD ES  A+  A++E +     ++++H   
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 133 LIRDTECTLWVIENQTIEE 151
            I   +  + V+E+  I E
Sbjct: 541 TIEKAD-EIVVVEDGVIVE 558

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   L    ++ILDE T+ LD ES  A+  A++E +     ++++H   
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 133 LIRDTECTLWVIENQTIEE 151
            I   +  + V+E+  I E
Sbjct: 541 TIEQAD-EIVVVEDGIIVE 558

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 46  LFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEP 101
           L N P ++ +++    L   GL G  H     +LSGGQK RVA+A    + P V++ D+ 
Sbjct: 132 LDNTPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQA 190
Query: 102 TNNLD---IESIDALADAINEYKG-GVIIVSHDERLI-RDTECTLWVIENQTIEE 151
           T+ LD     SI  L   IN   G  +++++H+  ++ R  +C   +   + IE+
Sbjct: 191 TSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQ 245

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA 112
           KA + L   GL   AH      LSGGQ  RVA+A      P +++ DEPT+ LD E +  
Sbjct: 118 KAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 176
Query: 113 LADAINEYKG---GVIIVSHDERLIRDT 137
           +   + +       +++V+H+    R+ 
Sbjct: 177 VLSVMKQLANEGMTMVVVTHEMGFAREV 204

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           E  R Q+G  GL           LSGG+K RVA+A   L AP +I+LDE T+ LD  +  
Sbjct: 178 EGYRTQVGERGL----------KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 112 ALADAINEYKGG--VIIVSH 129
           A+  ++ +       I+V+H
Sbjct: 228 AIQASLAKVCANRTTIVVAH 247

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIV 127
           ++DLSGG+  RVA+A   L   D+ +LDEP+  LD+E   A++ AI     + +   ++V
Sbjct: 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 128 SHDERLIRDTECTLWVIENQ 147
            HD  +I      L V E +
Sbjct: 529 EHDVLMIDYVSDRLIVFEGE 548

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIV 127
           ++DLSGG+  RVA+A   L   D+ +LDEP+  LD+E   A++ AI     + +   ++V
Sbjct: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Query: 128 SHDERLIRDTECTLWVIENQ 147
            HD  +I      L V E +
Sbjct: 515 EHDVLMIDYVSDRLIVFEGE 534

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA 112
           KA + L   GL   AH      LSGGQ  RVA+A      P +++ DEPT+ LD E +  
Sbjct: 139 KAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 197
Query: 113 LADAINEYKG---GVIIVSHDERLIRDT 137
           +   + +       +++V+H+    R+ 
Sbjct: 198 VLSVMKQLANEGMTMVVVTHEMGFAREV 225

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG--GV--IIVS 128
           ++LSG Q+ RVALA   +  P +++LDEP +NLD    D+    + E +   GV  ++VS
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 129 HD 130
           HD
Sbjct: 199 HD 200

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K ++LSGGQ+ RVAL    +  P V ++DEP +NLD
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 48  NLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN 103
           N P ++ +++    L   GL G  H     +LSGGQK RVA+A    + P V++ D+ T+
Sbjct: 134 NTPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATS 192
Query: 104 NLD---IESIDALADAINEYKG-GVIIVSHDERLI-RDTECTLWVIENQTIEE 151
            LD     SI  L   IN   G  +++++H+  ++ R  +C   +   + IE+
Sbjct: 193 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGG++ R+A+A   L  P ++I DE T++LD ++      A+ + +    +II++H   
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215
Query: 133 LIRDTECTLWVIENQTIEE 151
            I   E  + + + + +E+
Sbjct: 216 TISSAESIILLNKGKIVEK 234

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           +SGGQ+ R+A+A   L  P +++LDE T +LD ES   +  A++    G   ++++H   
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199
Query: 133 LIRDTECTLWVIENQ 147
            I D +   ++ + Q
Sbjct: 200 TIVDADKIYFIEKGQ 214

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K K LSGGQ+ RVA+    +  P V +LDEP +NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD----IESIDALADAINEYKGGVIIVSHD 130
           LS GQK RVA+A + +  P V+ILDEPT  LD     E +  L +   E    +II +HD
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K K LSGGQ+ RVA+    +  P V +LDEP +NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKG---GVIIVSHDE 131
            SGG+K R  + +L +  P   +LDE  + LDI+++  +A  +N  +G   G ++++H +
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 132 RLI 134
           R++
Sbjct: 204 RIL 206

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
           LSGGQ+ R+A+A   +N P ++I DE T+ LD ES
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
           LSGGQ+ R+A+A   +N P ++I DE T+ LD ES
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K   LSGGQ+ RVALA   +  P V++ DEP +NLD
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K ++LSGGQ+ RVAL    +  P V + DEP +NLD
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K K LSGGQ+ RVA+    +  P V +LD+P +NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 65  GHAHTIKMKD--LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI----N 118
           G AH +  K   LSGG++ RVALA   +  P +++LDEP + +D+++   L + +     
Sbjct: 115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
Query: 119 EYKGGVIIVSHD 130
           E+   ++ V+HD
Sbjct: 175 EFDVPILHVTHD 186

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 72  MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIV 127
           + +LSGG+  RVA+A   L   D+ +LDEP+  LD+E   A++ AI     + +   ++V
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 128 SHDERLIRDTECTLWVIENQ 147
            HD   I      L V E +
Sbjct: 459 EHDVLXIDYVSDRLXVFEGE 478

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-41
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-28
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-10
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-15
1sgw_A	214	Putative ABC transporter; structural genomics, P p	3e-16
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	5e-16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	6e-16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	7e-15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-14
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	5e-15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-13
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	3e-12
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	5e-12
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	5e-12
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	1e-11
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	1e-11
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	2e-11
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-11
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	6e-10
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	2e-09
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	3e-09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	6e-09
2ghi_A	260	Transport protein; multidrug resistance protein, M	6e-09
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	7e-09
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-08
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-08
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	3e-08
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	5e-08
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	6e-08
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-07
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	3e-07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	6e-07
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	7e-07
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-06
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-06
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	3e-06
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	8e-06
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-05
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-05
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	5e-05
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	5e-05
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	5e-05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	1e-04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	1e-04
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	2e-04
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	4e-04
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	6e-04

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  146 bits (370), Expect = 3e-41
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 2/145 (1%)

Query: 15  KKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAG-HAHTIKM 72
             N  +  G   +   + +   +         F  L  ++  +     GL        ++
Sbjct: 840 VDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDER 132
           + LSGGQK ++ LA  T   P +I+LDEPTN LD +S+ AL+ A+ E++GGVII++H   
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959

Query: 133 LIRDTECTLWVIENQTIEEIDGDFD 157
             ++    +W +++  +     ++ 
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHNWV 984

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  108 bits (271), Expect = 5e-28
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 19  RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78
             R    +    +   ++ +  +++        E  + +L  FG       + +  LSGG
Sbjct: 494 ECRTVYVEHDI-DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGG 552

Query: 79  QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE 138
            K ++ALA   L   D+++LDEPTN+LD  ++  L + +N      I +SHD   + D  
Sbjct: 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL-DNV 611

Query: 139 CT-LWVIENQTIEEIDGDFDDYRKELLEAL 167
           C  +   E   + +  G+F ++ K+   A 
Sbjct: 612 CEYIINYEGLKLRKYKGNFTEFVKKCPAAK 641

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSGEHL--TAEETPAEYLQRLFNL--PYEKARKQLGTF 61
           +L P  GE+  +   RI    QH+  H+    ++TP+EY+Q  F      E   +     
Sbjct: 722 ELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQI 781

Query: 62  GLAGHAHTIKMKDLSGGQKARVALAELTLNAP----DVIILDEPTNNLDIESIDALADAI 117
                    K+  + G  +    +            +   L      +  E    +    
Sbjct: 782 NENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVD 841

Query: 118 NEYKGGVIIVSHDERLIRDTE 138
           N +     +V    +++ + +
Sbjct: 842 NAWIPRGELVESHSKMVAEVD 862

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI---NEYKGGVIIV 127
           ++  LSGG+  RVA+A   L        DEP++ LDI     +A  I         V++V
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284

Query: 128 SHD 130
            HD
Sbjct: 285 EHD 287

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVII 126
            ++DLSGG+  RVA+A   L   D+ +LDEP+  LD+E       A+   + + +   ++
Sbjct: 468 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527

Query: 127 VSHDERLIRDTECT-LWVIENQTIEE--IDGDFD--DYRKELLEALG 168
           V HD  +I       L V E +              +     L ++G
Sbjct: 528 VEHDVLMIDYV-SDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVG 573

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 16/136 (11%)

Query: 7   LQPQQGELK------KNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR--K 56
           L+P +GE+          + +I    +       ++ E+   + +  L+ +   K     
Sbjct: 59  LKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDY-LKAVASLYGVKVNKNEIMD 117

Query: 57  QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADA 116
            L +  +       K+ +LS G   RV LA   L   ++ +LD+P   +D +S   +  +
Sbjct: 118 ALESVEVLDLKK--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS 175

Query: 117 INEY---KGGVIIVSH 129
           I E    KG VII S 
Sbjct: 176 ILEILKEKGIVIISSR 191

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 72.6 bits (179), Expect = 5e-16
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 19  RLRIGRFDQHSG--EHLTAEETPAEYLQ---RLFNLPYEKARKQ----LGTFGLAGHAHT 69
           R  I    + +G   ++   E    YL+     +     +  +         GL      
Sbjct: 87  RKLISYLPEEAGAYRNMQGIE----YLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142

Query: 70  IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VII 126
            ++   S G   ++ +A   +  P + ILDEPT+ LD+ +   +   + +       +++
Sbjct: 143 -RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201

Query: 127 VSH 129
            SH
Sbjct: 202 SSH 204

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 73.9 bits (182), Expect = 6e-16
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVS 128
               LSGG   R+ +A   L   DV I D+P++ LD+     +A AI E      VI+V 
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194

Query: 129 HD 130
           HD
Sbjct: 195 HD 196

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVS 128
            DLSGG+  ++ +A       D+ +LD+P++ LD+E       A+     E K    I+ 
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443

Query: 129 HDERLIRDTECT-LWVIENQTIEEIDGD--------FDDYRKEL 163
           HD  +        + V + +  +              +++ +EL
Sbjct: 444 HDLSIHDYI-ADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
            LSGG+  RVA+A   L        DEP++ LDI      A AI         V++V HD
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVS 128
            +LSGG+  RVA+A   L   D+ +LDEP+  LD+E       A+   + + +   ++V 
Sbjct: 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459

Query: 129 HDERLIRDTECT-LWVIENQTIEEIDG----DFDDYRKELLEALG 168
           HD  +I       L V E +  +           +     L ++G
Sbjct: 460 HDVLMIDYV-SDRLMVFEGEPGKYGRALPPMGMREGMNRFLASIG 503

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 13  ELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKM 72
           +++   R       +     +T  +      + L  L  +   + L    L       K+
Sbjct: 69  KIRNYIRYSTNLP-EAYEIGVTVNDIVY-LYEELKGLDRDLFLEMLKALKLGEEILRRKL 126

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHD 130
             LS GQ   V  +    + P+++ LDEP  N+D      ++  I EY    I+V+H+
Sbjct: 127 YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHE 184

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 74  DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGVIIVSHD 130
            LSGG+  R A+    +   DV + DEP++ LD++     A  I         VI V HD
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVS 128
           + LSGG+  RVA+        D+ ++DEP+  LD E     +  I  +    K    IV 
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525

Query: 129 HDERLIRDTECT-LWVIENQTIEEI 152
           HD  +        + V E    +  
Sbjct: 526 HDFIMATYL-ADKVIVFEGIPSKNA 549

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES-- 109
           ++A + L    L       K   LSGGQ+ RVA+A    N P +I+ D+PT  LD ++  
Sbjct: 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182

Query: 110 -IDALADAINEYKGG-VIIVSHDE-------RLIR 135
            I  L   +NE  G  V++V+HD        R+I 
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIY 217

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 61.4 bits (150), Expect = 5e-12
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALA-------ELTLNAPDVIILDEPTNN 104
                 L      G +       LSGG+  RV LA            A  +++LDEP N+
Sbjct: 108 NDVAGALALDDKLGRSTN----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163

Query: 105 LDI---ESIDALADAINEYKGGVIIVSHD 130
           LD+    ++D +  A+++    +++ SHD
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSHD 192

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 74  DLSGGQKARVALAE-LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSH 129
            LSGG+K RVA+A  +    PD++ILDEP   LD E    L   + ++K     VI++SH
Sbjct: 138 FLSGGEKRRVAIASVIVHE-PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196

Query: 130 D 130
           D
Sbjct: 197 D 197

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES-- 109
           E+    L   GL       K  +LSGG++ RVA+A    N P ++  DEPT NLD  +  
Sbjct: 119 ERGEYLLSELGLGDKLSR-KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177

Query: 110 -IDALADAINEYKGGVIIVSHDERL 133
            +  +   INE    +++V+H+  L
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHEREL 202

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 60.6 bits (148), Expect = 1e-11
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           ++    L   G+           LS GQK RVA+A + +  P V+ILDEPT  LD   + 
Sbjct: 122 KRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180

Query: 112 ALADAIN----EYKGGVIIVSHD 130
            +   +     E    +II +HD
Sbjct: 181 EIMKLLVEMQKELGITIIIATHD 203

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 35  AEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALA------EL 88
           A E  AE+ +  ++    +A +      +        +  LSGG++  + LA        
Sbjct: 209 ASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLY 268

Query: 89  TLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDERLIR 135
                 ++ILDEPT  LD E    L   +  Y      VI+VSHDE L  
Sbjct: 269 LAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 318

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 59.5 bits (145), Expect = 3e-11
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI 110
             +A + L   G++  A    +  LS G+K RV +A   +  P V+ILDEP   LD  + 
Sbjct: 139 RNEAHQLLKLVGMSAKAQQ-YIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIAR 197

Query: 111 DALADAINEYKG-----GVIIVSHD 130
           ++L   ++          +I V+H 
Sbjct: 198 ESLLSILDSLSDSYPTLAMIYVTHF 222

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 51  YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARV----ALAELTLNAPDVIILDEPTNNLD 106
           Y+ A + L    L   A   +   LSGGQ+  +    A+A    +   +I+LDEPT+ LD
Sbjct: 106 YQVAMQALDYLNLTHLAKR-EFTSLSGGQRQLILIARAIA----SECKLILLDEPTSALD 160

Query: 107 ----IESIDALADAINEYKGGVIIVSHD 130
                  +  L D        V+  +H 
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQ 188

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 9/130 (6%)

Query: 13  ELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKM 72
           ++++       +           ++   E               +     +      + +
Sbjct: 219 KVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTI 278

Query: 73  KDLSGGQKARVALAE-------LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG-- 123
            +LSGG++  VAL+        L  N  + IILDEPT  LD      LA+   + K    
Sbjct: 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQ 338

Query: 124 VIIVSHDERL 133
           +II++H   L
Sbjct: 339 MIIITHHREL 348

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 14/116 (12%)

Query: 33  LTAEETPAEYLQRLFNLPYEKAR----KQLGTFGLAGHAHTIKMKDLSGGQKARVALA-- 86
              E   +E         Y +      +      +        +  LSGG++  + LA  
Sbjct: 13  KIGELA-SEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFR 71

Query: 87  ----ELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VIIVSHDERLIR 135
                       ++ILDEPT  LD E    L   +  Y      VI+VSHDE L  
Sbjct: 72  LAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 127

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 6/66 (9%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQK R+A+A   +  P +++LDE T+ LD ES   +  A+++ + G   I+++H  R
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH--R 584

Query: 133 L--IRD 136
           L  +R+
Sbjct: 585 LSTVRN 590

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 6/66 (9%)

Query: 75   LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
            LSGGQK R+A+A   +  P +++LDE T+ LD ES   + +A+++ + G   I+++H  R
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH--R 1229

Query: 133  L--IRD 136
            L  I++
Sbjct: 1230 LSTIQN 1235

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGG++ R+A+A   L  P ++I DE T++LD ++      A+ + +    +II++H  R
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH--R 213

Query: 133 L--IRDTECTLWVIENQTIEE 151
           L  I   E  + ++    I E
Sbjct: 214 LSTISSAESII-LLNKGKIVE 233

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 53.0 bits (128), Expect = 7e-09
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 7/81 (8%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGG+K RVA+A   L AP +I+LDE T+ LD  +  A+  ++ +       I+V+H  R
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH--R 248

Query: 133 L--IRDTECTLWVIENQTIEE 151
           L  + + +  L VI++  I E
Sbjct: 249 LSTVVNADQIL-VIKDGCIVE 268

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 7/81 (8%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   +N P ++I DE T+ LD ES   +   +++   G  VII++H  R
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH--R 203

Query: 133 L--IRDTECTLWVIENQTIEE 151
           L  +++ +  + V+E   I E
Sbjct: 204 LSTVKNADRII-VMEKGKIVE 223

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE-LTLNAPDVIILDEPTNNLDIE 108
           E+A K L   G+   A       LSGGQ+ RV++A  L +  PDV++ DEPT+ LD E
Sbjct: 131 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME-PDVLLFDEPTSALDPE 187

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           +SGGQ+ R+A+A   L  P +++LDE T +LD ES   +  A++    G   ++++H  R
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH--R 197

Query: 133 L--IRDTECTLWVIENQTIEE 151
           L  I D +     IE   I  
Sbjct: 198 LSTIVDADKIY-FIEKGQITG 217

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
            + R+     G+A      K   LSGG++ RVALA   +  P +++LDEP + +D
Sbjct: 105 RRVREMAEKLGIAHLLDR-KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 52  EKARKQLGTFGLAGHAHTIKM-KDLSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIES 109
            KA + L   GL   AH       LSGGQ  RVA+A  L +  P +++ DEPT+ LD E 
Sbjct: 138 AKAMELLDKVGLKDKAH--AYPDSLSGGQAQRVAIARALAME-PKIMLFDEPTSALDPEM 194

Query: 110 I 110
           +
Sbjct: 195 V 195

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 1   MYAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGT 60
                 L+    +     R   GR  +   +   A        +   +   EK    +  
Sbjct: 211 YNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKD 270

Query: 61  FGLAGHAHTIKMKDLSGGQKARV------ALAELTLNAPDVIILDEPTNNLDIESIDALA 114
           +G+   A       LSGG++A +      +LAE+     D   +DE  ++LD E+ + +A
Sbjct: 271 WGIERPARG-----LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIA 325

Query: 115 DAINEYKGG---VIIVSHDERL 133
             + E +     ++ ++HD   
Sbjct: 326 SVLKELERLNKVIVFITHDREF 347

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           ++         +           LSGG++ RVALA   +  P +++LDEP + LD
Sbjct: 106 KRVLDTARDLKIEHLLDR-NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVSHD 130
           LSGGQ+  VALA   +  P ++ILD  T+ LD  +       L ++       V++++  
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ- 215

Query: 131 ERL--IRDTECTLWVIENQTIEE 151
            +L         L  ++  ++ E
Sbjct: 216 -QLSLAERAHHIL-FLKEGSVCE 236

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           LSGGQ+ RVALA      P V++ DEP   +D
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAID 177

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 52  EKARKQLGTFGLAGHAHTIKM-KDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           ++    L   G++  A   +   +LSGGQ+ R ALA      P++I+LDEP + LD
Sbjct: 117 QRIEAMLELTGISELAG--RYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 12/98 (12%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQK R+++A + LN P ++ILDE T+ LD+ES   + +A++        +IV+H  R
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH--R 535

Query: 133 L--IRDTECTLWVIENQTIEEIDGDFDDYRKELLEALG 168
           L  I   +  + VIEN  I E  G       EL+   G
Sbjct: 536 LSTITHADKIV-VIENGHIVET-GTHR----ELIAKQG 567

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPT---NNLDIE 108
           EKA K L    L+      K  +LSGGQ   V +    +  P +I++DEP          
Sbjct: 132 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190

Query: 109 SIDALADAINEYKGGVIIVSHDERLIRD 136
            I      +       +I+ H   ++ +
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIVLN 218

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE--- 108
            +  + L   GL     +    +LSGGQK RVA+A    + P V++ D+ T+ LD     
Sbjct: 142 RRVTELLSLVGLGDKHDS-YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200

Query: 109 SIDALADAINEYKG-GVIIVSHDERLIRD 136
           SI  L   IN   G  +++++H+  +++ 
Sbjct: 201 SILELLKDINRRLGLTILLITHEMDVVKR 229

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 44.1 bits (105), Expect = 8e-06
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 7/81 (8%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ RVA+A   L    V+ILDE T+ LD ES  A+  A++E +    V++++H  R
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH--R 538

Query: 133 L--IRDTECTLWVIENQTIEE 151
           L  I   +  L V++   I E
Sbjct: 539 LSTIEQADEIL-VVDEGEIIE 558

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
             ++LSG Q+ RVALA   +  P +++LDEP +NLD
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIES 109
           LSGGQ+ R+A+A   L    ++ILDE T+ LD ES
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTES 515

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 9/66 (13%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL---ADAINEYKG---GVIIVSH 129
           SGG+K R  + +L +  P   +LDE  + LD   IDAL   A  +N  +G   G ++++H
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLD---IDALKVVARGVNAMRGPNFGALVITH 201

Query: 130 DERLIR 135
            +R++ 
Sbjct: 202 YQRILN 207

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 9/66 (13%)

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL---ADAINEYKG---GVIIVSH 129
           SGG+K R  + ++ +  P++ ILDE  + LD   IDAL   AD +N  +      IIV+H
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLD---IDALKVVADGVNSLRDGKRSFIIVTH 222

Query: 130 DERLIR 135
            +R++ 
Sbjct: 223 YQRILD 228

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
               LSGGQ+ RVA+A   +  P+V++LDEP +NLD
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
               LSGGQ+ RVA+A   +  PDV+++DEP +NLD
Sbjct: 138 YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K   LSGGQ+ RVALA   +  P V++ DEP +NLD
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD 106
           K ++LSGGQ+ RVAL    +  P V ++DEP +NLD
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL 113
           LS G K  + LA   L+   +++LDEP+ +LD  +   +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQI 193

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVS 128
            SGGQK R+++A   +  P V+ILD+ T+++D  +   + D +  Y  G    I++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.98
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.97
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.97
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.97
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.97
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.97
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.97
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.97
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.97
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.96
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.96
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.95
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.95
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.95
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.95
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.95
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.94
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.93
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.91
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.9
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.9
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.89
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.89
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.88
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.87
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.87
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.86
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.86
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.86
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.85
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.84
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.81
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.79
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.79
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.79
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.78
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.76
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.74
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.71
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.67
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.67
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.63
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.49
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.44
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.41
2og2_A	359	Putative signal recognition particle receptor; nuc	99.37
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.29
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.25
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.21
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.19
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.16
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.16
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.11
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.07
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.06
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.03
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.99
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.96
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.93
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.9
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.88
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.79
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.78
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.73
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.72
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.63
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.62
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.62
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.61
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.59
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.56
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.51
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.43
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.41
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.4
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.1
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.8
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.74
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.61
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.56
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.56
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.41
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.38
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.38
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.33
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.28
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.22
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.07
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.99
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.96
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.96
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.92
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.74
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.66
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.53
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.51
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.24
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.92
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.62
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.61
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.58
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.55
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.44
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.27
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.25
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.23
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.14
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.67
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.66
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	93.9
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	93.21
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	92.8
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	92.26
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	91.97
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	91.84
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	90.92
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	90.91
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	90.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	90.23
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	90.14
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	89.41
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	89.35
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	88.13
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	88.1
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	87.98
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	87.55
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	87.45
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	87.32
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	84.64
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	83.85
2z43_A	324	DNA repair and recombination protein RADA; archaea	81.88

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=4e-37  Score=255.62  Aligned_cols=153  Identities=24%  Similarity=0.339  Sum_probs=127.1

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~   60 (184)
                      .|+|+++|++|+|.+++              ++.|||+||++.  +.+..|+.+++..   ..+.+.    +++.++++.
T Consensus        73 ~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~  150 (366)
T 3tui_C           73 CVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL  150 (366)
T ss_dssp             HHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            58899999999998764              246999999974  4455566665432   233332    457789999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~  136 (184)
                      +|+.+..+ +++++|||||||||+|||||+.+|++|||||||++||+.++..++++|++.    +.|||+||||++++..
T Consensus       151 vgL~~~~~-~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~  229 (366)
T 3tui_C          151 VGLGDKHD-SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR  229 (366)
T ss_dssp             HTCGGGTT-CCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred             cCCchHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence            99987665 589999999999999999999999999999999999999999999988653    7899999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      +||++++|++|++++ .|+..+
T Consensus       230 ~aDrv~vl~~G~iv~-~g~~~e  250 (366)
T 3tui_C          230 ICDCVAVISNGELIE-QDTVSE  250 (366)
T ss_dssp             HCSEEEEEETTEEEE-CCBHHH
T ss_pred             hCCEEEEEECCEEEE-EcCHHH
Confidence            999999999999976 555433

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=1e-36  Score=240.29  Aligned_cols=147  Identities=24%  Similarity=0.304  Sum_probs=120.8

Q ss_pred             cccCcccCCceeEEecCC---------------eEEEEEecCCCCCCCccCCHHHHHHHh---c---CCC----HHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNHR---------------LRIGRFDQHSGEHLTAEETPAEYLQRL---F---NLP----YEKARK   56 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~---------------~~ig~v~q~~~~~l~~~~~~~~~~~~~---~---~~~----~~~~~~   56 (184)
                      +|+|+++|++|+|.+++.               ..+||+||++.  +.+..|+.+++...   .   ...    .+++.+
T Consensus        50 ~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~  127 (235)
T 3tif_A           50 IIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALE  127 (235)
T ss_dssp             HHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHH
T ss_pred             HHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc--cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHH
Confidence            589999999999987641               25999999974  44556666655321   1   222    234678


Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDER  132 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~  132 (184)
                      +++.+++.+...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+.++    +.|||+||||++
T Consensus       128 ~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~  207 (235)
T 3tif_A          128 CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN  207 (235)
T ss_dssp             HHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred             HHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            8999999765434689999999999999999999999999999999999999999999988653    789999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEE
Q psy11928        133 LIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~  151 (184)
                      .+ .+||++++|++|+++.
T Consensus       208 ~~-~~~d~i~~l~~G~i~~  225 (235)
T 3tif_A          208 VA-RFGERIIYLKDGEVER  225 (235)
T ss_dssp             HH-TTSSEEEEEETTEEEE
T ss_pred             HH-HhCCEEEEEECCEEEE
Confidence            65 7899999999999975

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.6e-36  Score=251.72  Aligned_cols=155  Identities=23%  Similarity=0.235  Sum_probs=128.6

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCC----HHHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLP----YEKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~----~~~~~~~l~~~   61 (184)
                      +|+|+++|++|+|.+++             ++.|||+||++.  +.+..|+.+++....   +..    .+++.++++.+
T Consensus        49 ~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~--l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~  126 (359)
T 3fvq_A           49 CLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGV--LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT  126 (359)
T ss_dssp             HHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCC--CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCc--CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc
Confidence            58999999999998653             246999999974  566777777765421   111    24678899999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHhh
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN----EYKGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~  137 (184)
                      |+++..+ +++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.+.    +.+.|+|+||||++++..+
T Consensus       127 gL~~~~~-r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~  205 (359)
T 3fvq_A          127 GISELAG-RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY  205 (359)
T ss_dssp             TCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred             CCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            9987665 5899999999999999999999999999999999999999998887553    4578999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||+|++|++|+++. .++++++.
T Consensus       206 aDri~vl~~G~i~~-~g~~~el~  227 (359)
T 3fvq_A          206 ADRIAVMKQGRILQ-TASPHELY  227 (359)
T ss_dssp             CSEEEEEETTEEEE-EECHHHHH
T ss_pred             CCEEEEEECCEEEE-EeCHHHHH
Confidence            99999999999975 55655543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.2e-36  Score=253.99  Aligned_cols=154  Identities=23%  Similarity=0.232  Sum_probs=128.5

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         ++.|||+||++.  +.+..|+.+++..   ..+.+.    +++.++++.+|+++
T Consensus        48 ~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~--l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  125 (381)
T 3rlf_A           48 MIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA--LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH  125 (381)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCC--CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCc--CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence            58999999999998764         356999999974  5556666665432   223332    45778999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++    .+.|+|+||||++++..+||+|
T Consensus       126 ~~~-r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri  204 (381)
T 3rlf_A          126 LLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI  204 (381)
T ss_dssp             GTT-CCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEE
T ss_pred             hhc-CChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEE
Confidence            665 58999999999999999999999999999999999999999999888864    3789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|+++. .+++.++
T Consensus       205 ~vl~~G~i~~-~g~~~~l  221 (381)
T 3rlf_A          205 VVLDAGRVAQ-VGKPLEL  221 (381)
T ss_dssp             EEEETTEEEE-EECHHHH
T ss_pred             EEEECCEEEE-EeCHHHH
Confidence            9999999976 5555554

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2.5e-36  Score=241.66  Aligned_cols=154  Identities=25%  Similarity=0.348  Sum_probs=126.3

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~----~~~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++             ++.+||+||++.  +....|+.+++..    ..+..    .+++.++++.
T Consensus        69 ~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~  146 (263)
T 2olj_A           69 CLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDK  146 (263)
T ss_dssp             HHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            58999999999998754             124999999874  4445566665432    12322    2356788999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~  137 (184)
                      +|+++..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++   +.|||+||||++++..+
T Consensus       147 ~~L~~~~~-~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~  225 (263)
T 2olj_A          147 VGLKDKAH-AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV  225 (263)
T ss_dssp             TTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCchHhc-CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence            99986665 589999999999999999999999999999999999999999999998654   68999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|+++. .++.+++
T Consensus       226 ~d~v~~l~~G~i~~-~g~~~~~  246 (263)
T 2olj_A          226 GDRVLFMDGGYIIE-EGKPEDL  246 (263)
T ss_dssp             CSEEEEEETTEEEE-EECHHHH
T ss_pred             CCEEEEEECCEEEE-ECCHHHH
Confidence            99999999999975 4555544

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=3.3e-36  Score=238.07  Aligned_cols=154  Identities=24%  Similarity=0.301  Sum_probs=127.6

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhcCC-----CHHHHHHHHhhCCCCccc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNL-----PYEKARKQLGTFGLAGHA   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~   67 (184)
                      +|+|+++|++|+|.+++         ++.+||+||++.  +....|+.+++......     ..+++.++++.+|+.+..
T Consensus        43 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  120 (240)
T 2onk_A           43 LIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL  120 (240)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT
T ss_pred             HHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh
Confidence            58999999999998754         346999999874  44556777766432111     134577899999998766


Q ss_pred             ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEE
Q psy11928         68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      + +++++|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+.    +.|||+||||++++..+||++++
T Consensus       121 ~-~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~  199 (240)
T 2onk_A          121 D-RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV  199 (240)
T ss_dssp             T-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE
T ss_pred             c-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            5 589999999999999999999999999999999999999999999988653    68999999999999999999999


Q ss_pred             EeCCeEEEecCChhHH
Q psy11928        144 IENQTIEEIDGDFDDY  159 (184)
Q Consensus       144 l~~g~i~~~~~~~~~~  159 (184)
                      |++|+++. .++.++.
T Consensus       200 l~~G~i~~-~g~~~~~  214 (240)
T 2onk_A          200 MLNGRIVE-KGKLKEL  214 (240)
T ss_dssp             EETTEEEE-EECHHHH
T ss_pred             EECCEEEE-ECCHHHH
Confidence            99999975 4555544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=2.9e-36  Score=241.17  Aligned_cols=154  Identities=27%  Similarity=0.394  Sum_probs=125.7

Q ss_pred             cccCcccCCceeEEecC------------------------CeEEEEEecCCCCCCCccCCHHHHHHH----hcCCC---
Q psy11928          2 YAHCDLQPQQGELKKNH------------------------RLRIGRFDQHSGEHLTAEETPAEYLQR----LFNLP---   50 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~~~---   50 (184)
                      +|+|+++|++|+|.+++                        ++.+||+||++.  +....|+.+++..    ..+..   
T Consensus        51 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~  128 (262)
T 1b0u_A           51 CINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKHD  128 (262)
T ss_dssp             HHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCCHHH
T ss_pred             HHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcc--cCCCCcHHHHHHhhHHHhcCCCHHH
Confidence            58999999999998754                        124999999864  4445566665432    12222   


Q ss_pred             -HHHHHHHHhhCCCCcc-cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928         51 -YEKARKQLGTFGLAGH-AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVI  125 (184)
Q Consensus        51 -~~~~~~~l~~~~l~~~-~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tii  125 (184)
                       .+++.++++.+|+.+. .+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++.   +.|||
T Consensus       129 ~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi  207 (262)
T 1b0u_A          129 ARERALKYLAKVGIDERAQG-KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV  207 (262)
T ss_dssp             HHHHHHHHHHHTTCCHHHHT-SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHcCCCchhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence             2357789999999866 54 589999999999999999999999999999999999999999999988654   68999


Q ss_pred             EEecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        126 IVSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       126 ivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +||||++++..+||++++|++|+++. .++.+++
T Consensus       208 ~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~  240 (262)
T 1b0u_A          208 VVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV  240 (262)
T ss_dssp             EECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred             EEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            99999999999999999999999975 4555443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.2e-36  Score=242.43  Aligned_cols=155  Identities=25%  Similarity=0.307  Sum_probs=126.7

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhC
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTF   61 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~   61 (184)
                      +|+|+++|++|+|.+++             ++.|||+||++...+. ..|+.+++..   ..+.+.    +++.++++.+
T Consensus        53 ~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~  131 (275)
T 3gfo_A           53 NFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT  131 (275)
T ss_dssp             HHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            58999999999998764             2359999998742222 4566665432   223332    4577889999


Q ss_pred             CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhh
Q psy11928         62 GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        62 ~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~  137 (184)
                      |+++..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++    +.|||+||||++++..+
T Consensus       132 ~L~~~~~-~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~  210 (275)
T 3gfo_A          132 GIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY  210 (275)
T ss_dssp             TCGGGTT-SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGG
T ss_pred             CCchhhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHh
Confidence            9987665 589999999999999999999999999999999999999999999888643    67999999999999999


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|+++. .++..++
T Consensus       211 ~drv~~l~~G~i~~-~g~~~~~  231 (275)
T 3gfo_A          211 CDNVFVMKEGRVIL-QGNPKEV  231 (275)
T ss_dssp             CSEEEEEETTEEEE-EECHHHH
T ss_pred             CCEEEEEECCEEEE-ECCHHHH
Confidence            99999999999975 5665554

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=6.1e-36  Score=248.08  Aligned_cols=155  Identities=22%  Similarity=0.269  Sum_probs=127.9

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         ++.+||+||++.  +.+..|+.+++..   ..+.+    .+++.++++.+|+++
T Consensus        60 ~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~  137 (355)
T 1z47_A           60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES  137 (355)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred             HHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence            58999999999998764         346999999874  4455566655432   22333    245778999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++++|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++    .+.|+|+||||++++..+||++
T Consensus       138 ~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri  216 (355)
T 1z47_A          138 YAN-RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRV  216 (355)
T ss_dssp             GTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEE
T ss_pred             Hhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEE
Confidence            665 58999999999999999999999999999999999999999999988864    3789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      ++|++|+++. .++++++.
T Consensus       217 ~vl~~G~i~~-~g~~~~l~  234 (355)
T 1z47_A          217 LVLHEGNVEQ-FGTPEEVY  234 (355)
T ss_dssp             EEEETTEEEE-EECHHHHH
T ss_pred             EEEECCEEEE-EcCHHHHH
Confidence            9999999975 55655543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=9.6e-36  Score=247.34  Aligned_cols=155  Identities=22%  Similarity=0.249  Sum_probs=129.5

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCC----HHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLP----YEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         ++.+||+||++.  +.+..|+.+++....   +.+    .+++.++++.+|+++
T Consensus        48 ~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  125 (359)
T 2yyz_A           48 MLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA--LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN  125 (359)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCC--CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG
T ss_pred             HHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence            58999999999998764         246999999874  556677777765422   221    245788999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++.    +.|+|+||||++++..+||++
T Consensus       126 ~~~-r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri  204 (359)
T 2yyz_A          126 LLD-RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRI  204 (359)
T ss_dssp             GTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEE
T ss_pred             Hhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence            665 589999999999999999999999999999999999999999999888653    789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      ++|++|+++. .++++++.
T Consensus       205 ~vl~~G~i~~-~g~~~~l~  222 (359)
T 2yyz_A          205 AVFNQGKLVQ-YGTPDEVY  222 (359)
T ss_dssp             EEEETTEEEE-EECHHHHH
T ss_pred             EEEECCEEEE-eCCHHHHH
Confidence            9999999975 55655543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=3.2e-36  Score=249.38  Aligned_cols=154  Identities=19%  Similarity=0.237  Sum_probs=127.3

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCC-CHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNL-PYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~-~~~~~~~~l~~~~l~~~~~   68 (184)
                      +|+|+++|++|+|.+++         ++.+||+||++.  +.+..|+.+++..   ..+. ..+++.++++.+++++..+
T Consensus        45 ~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~  122 (348)
T 3d31_A           45 LIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS--LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD  122 (348)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCC--CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT
T ss_pred             HHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc
Confidence            58999999999998765         246999999874  4445566555432   1221 2367888999999987665


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                       +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++.    +.|+|+||||++++..+||++++|
T Consensus       123 -~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl  201 (348)
T 3d31_A          123 -RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV  201 (348)
T ss_dssp             -SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             -CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence             589999999999999999999999999999999999999999999888653    789999999999999999999999


Q ss_pred             eCCeEEEecCChhHH
Q psy11928        145 ENQTIEEIDGDFDDY  159 (184)
Q Consensus       145 ~~g~i~~~~~~~~~~  159 (184)
                      ++|++.. .++++++
T Consensus       202 ~~G~i~~-~g~~~~~  215 (348)
T 3d31_A          202 MDGKLIQ-VGKPEEI  215 (348)
T ss_dssp             SSSCEEE-EECHHHH
T ss_pred             ECCEEEE-ECCHHHH
Confidence            9999975 4555443

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.1e-35  Score=246.68  Aligned_cols=155  Identities=24%  Similarity=0.259  Sum_probs=128.9

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~----~~~~~~~l~~   60 (184)
                      +|+|+++|++|+|.+++              ++.+||+||++.  +.+..|+.+++....   +.+    .+++.++++.
T Consensus        50 ~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~  127 (353)
T 1oxx_K           50 IIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI  127 (353)
T ss_dssp             HHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            58999999999997653              246999999874  556677777765422   222    2457789999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~  136 (184)
                      +|+++..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++.    +.|+|+||||++++..
T Consensus       128 ~~L~~~~~-~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~  206 (353)
T 1oxx_K          128 LDIHHVLN-HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA  206 (353)
T ss_dssp             TTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred             cCCchHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            99987665 589999999999999999999999999999999999999999999888643    7899999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      +||++++|++|+++. .++++++.
T Consensus       207 ~adri~vl~~G~i~~-~g~~~~l~  229 (353)
T 1oxx_K          207 IADRVGVLVKGKLVQ-VGKPEDLY  229 (353)
T ss_dssp             HCSEEEEEETTEEEE-EECHHHHH
T ss_pred             hCCEEEEEECCEEEE-EcCHHHHH
Confidence            999999999999975 45555543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-35  Score=246.92  Aligned_cols=155  Identities=23%  Similarity=0.241  Sum_probs=127.9

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         ++.+||+||++.  +.+..|+.+++..   ..+...    +++.++++.+|+++
T Consensus        48 ~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  125 (362)
T 2it1_A           48 TIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK  125 (362)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT
T ss_pred             HHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence            58999999999998764         246999999874  4455566665432   223332    45778999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++.    +.|+|+||||++++..+||++
T Consensus       126 ~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri  204 (362)
T 2it1_A          126 LLN-RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRI  204 (362)
T ss_dssp             CTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE
T ss_pred             Hhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence            665 589999999999999999999999999999999999999999999888653    789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      ++|++|+++. .++++++.
T Consensus       205 ~vl~~G~i~~-~g~~~~~~  222 (362)
T 2it1_A          205 AVIREGEILQ-VGTPDEVY  222 (362)
T ss_dssp             EEEETTEEEE-EECHHHHH
T ss_pred             EEEECCEEEE-EcCHHHHH
Confidence            9999999975 45655543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=2.3e-35  Score=236.44  Aligned_cols=154  Identities=21%  Similarity=0.190  Sum_probs=128.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc---C--CCHHHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---N--LPYEKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~--~~~~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++           ++.+||++|++.  +....++.+++....   .  ...+++.++++.+++.+
T Consensus        56 ~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~  133 (266)
T 4g1u_C           56 LLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA  133 (266)
T ss_dssp             HHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST
T ss_pred             HHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh
Confidence            58999999999998764           235999999874  334567777765321   1  12356788999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHH
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLN------APDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIR  135 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~  135 (184)
                      ..+ +++.+|||||||||+|||||+.      +|++|||||||+|||+.++..+.+.|+++    +.|||+||||++++.
T Consensus       134 ~~~-~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~  212 (266)
T 4g1u_C          134 LAQ-RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAA  212 (266)
T ss_dssp             TTT-SBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHH
T ss_pred             Hhc-CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHH
Confidence            665 5899999999999999999999      99999999999999999999999988754    359999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+||++++|++|+++. .++.+++
T Consensus       213 ~~~d~v~vl~~G~i~~-~g~~~~~  235 (266)
T 4g1u_C          213 LYADRIMLLAQGKLVA-CGTPEEV  235 (266)
T ss_dssp             HHCSEEEEEETTEEEE-EECHHHH
T ss_pred             HhCCEEEEEECCEEEE-EcCHHHH
Confidence            9999999999999975 5666554

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.6e-35  Score=231.90  Aligned_cols=146  Identities=24%  Similarity=0.316  Sum_probs=120.9

Q ss_pred             cccCcccCCceeEEecCC---------------eEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNHR---------------LRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~---------------~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++.               +.+||+||++.  +....++.+++..   ..+..    .+++.++++
T Consensus        49 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~  126 (224)
T 2pcj_A           49 ILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY--LIPELTALENVIVPMLKMGKPKKEAKERGEYLLS  126 (224)
T ss_dssp             HHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcc--cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHH
Confidence            589999999999987531               35999999874  3445566655432   22222    245778999


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHh
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRD  136 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~  136 (184)
                      .+|+.+..+ +++++|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++   +.|||+||||++++ .
T Consensus       127 ~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~  204 (224)
T 2pcj_A          127 ELGLGDKLS-RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-E  204 (224)
T ss_dssp             HTTCTTCTT-CCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-T
T ss_pred             HcCCchhhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-H
Confidence            999987665 589999999999999999999999999999999999999999999988654   68999999999998 7


Q ss_pred             hcCeEEEEeCCeEEE
Q psy11928        137 TECTLWVIENQTIEE  151 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~  151 (184)
                      +||++++|++|+++.
T Consensus       205 ~~d~v~~l~~G~i~~  219 (224)
T 2pcj_A          205 LTHRTLEMKDGKVVG  219 (224)
T ss_dssp             TSSEEEEEETTEEEE
T ss_pred             hCCEEEEEECCEEEE
Confidence            999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.3e-35  Score=236.65  Aligned_cols=154  Identities=20%  Similarity=0.273  Sum_probs=126.1

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          ++.+||+||++.  +....|+.+++..   .++...    +++.++++.+|++
T Consensus        60 ~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~  137 (256)
T 1vpl_A           60 IISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG  137 (256)
T ss_dssp             HHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG
T ss_pred             HHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc
Confidence            58999999999998764          235999999874  3344566555432   223332    3567889999998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      +..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++   +.|||+||||++++..+||++
T Consensus       138 ~~~~-~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v  216 (256)
T 1vpl_A          138 EKIK-DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRI  216 (256)
T ss_dssp             GGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEE
T ss_pred             hHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEE
Confidence            7665 589999999999999999999999999999999999999999999998654   679999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|+++. .++.+++
T Consensus       217 ~~l~~G~i~~-~g~~~~~  233 (256)
T 1vpl_A          217 ALIHNGTIVE-TGTVEEL  233 (256)
T ss_dssp             EEEETTEEEE-EEEHHHH
T ss_pred             EEEECCEEEE-ecCHHHH
Confidence            9999999975 4555444

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.8e-35  Score=246.71  Aligned_cols=155  Identities=23%  Similarity=0.229  Sum_probs=125.4

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCH----HHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPY----EKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~l~~~~l~~   65 (184)
                      +|+|+++|++|+|.+++         ++.|||+||++.  +.+..|+.+++...   .+...    +++.++++.+|+++
T Consensus        56 ~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  133 (372)
T 1v43_A           56 MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE  133 (372)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence            58999999999998764         346999999874  45566777776532   12222    35778999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++    +.|+|+||||++++..+||++
T Consensus       134 ~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri  212 (372)
T 1v43_A          134 LLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI  212 (372)
T ss_dssp             GTT-SCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE
T ss_pred             Hhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence            665 589999999999999999999999999999999999999999999888653    789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~  160 (184)
                      ++|++|+++. .++++++.
T Consensus       213 ~vl~~G~i~~-~g~~~~l~  230 (372)
T 1v43_A          213 AVMNRGQLLQ-IGSPTEVY  230 (372)
T ss_dssp             EEEETTEEEE-EECHHHHH
T ss_pred             EEEECCEEEE-eCCHHHHH
Confidence            9999999975 55655543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=2.7e-35  Score=245.89  Aligned_cols=155  Identities=23%  Similarity=0.300  Sum_probs=127.1

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++               ++.|||+||++.  +.+..|+.+++..   ..+...    +++.++++
T Consensus        48 ~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~  125 (372)
T 1g29_1           48 MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE  125 (372)
T ss_dssp             HHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            58999999999998653               235999999874  4455566655432   223332    45778999


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~  135 (184)
                      .+|+++..+ +++++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++    .+.|+|+||||++++.
T Consensus       126 ~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~  204 (372)
T 1g29_1          126 LLGLTELLN-RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM  204 (372)
T ss_dssp             HHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred             HCCCchHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH
Confidence            999987665 58999999999999999999999999999999999999999999988864    3789999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      .+||++++|++|+++. .++++++.
T Consensus       205 ~~adri~vl~~G~i~~-~g~~~~l~  228 (372)
T 1g29_1          205 TMGDRIAVMNRGVLQQ-VGSPDEVY  228 (372)
T ss_dssp             HHCSEEEEEETTEEEE-EECHHHHH
T ss_pred             HhCCEEEEEeCCEEEE-eCCHHHHH
Confidence            9999999999999975 55655543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.3e-35  Score=236.83  Aligned_cols=153  Identities=23%  Similarity=0.204  Sum_probs=125.6

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc-----C-----------CC---
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-----N-----------LP---   50 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-----~-----------~~---   50 (184)
                      +|+|+++|++|+|.+++            +..+||+||++.  +....|+.+++....     +           ..   
T Consensus        52 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T 1g6h_A           52 VITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE  129 (257)
T ss_dssp             HHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHH
T ss_pred             HHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHH
Confidence            58999999999998764            125999999873  344556666654311     1           11   


Q ss_pred             -HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928         51 -YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVII  126 (184)
Q Consensus        51 -~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii  126 (184)
                       .+++.++++.+|+++..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++.   +.|||+
T Consensus       130 ~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~  208 (257)
T 1g6h_A          130 MVEKAFKILEFLKLSHLYD-RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI  208 (257)
T ss_dssp             HHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHcCCchhhC-CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence             235778899999986665 589999999999999999999999999999999999999999999998754   789999


Q ss_pred             EecCHHHHHhhcCeEEEEeCCeEEEecCChhH
Q psy11928        127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      ||||++++..+||++++|++|+++. .++.++
T Consensus       209 vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~  239 (257)
T 1g6h_A          209 IEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE  239 (257)
T ss_dssp             ECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred             EecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence            9999999999999999999999975 445444

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=5.8e-35  Score=230.87  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=125.1

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CC--C--HHHHHHHHhhCC-
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NL--P--YEKARKQLGTFG-   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~--~--~~~~~~~l~~~~-   62 (184)
                      +|+|+++|++|+|.+++            +..+||+||++.  +....|+.+++....  ..  .  .+.+.++++.++ 
T Consensus        51 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~  128 (240)
T 1ji0_A           51 AIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPR  128 (240)
T ss_dssp             HHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHH
T ss_pred             HHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCc--cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHccc
Confidence            58999999999998764            124999999874  445567777665321  11  1  235677888894 


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~  139 (184)
                      +.+..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++.   +.|||+||||++++..+||
T Consensus       129 l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d  207 (240)
T 1ji0_A          129 LKERLK-QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH  207 (240)
T ss_dssp             HHTTTT-SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred             HhhHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence            876554 589999999999999999999999999999999999999999999998654   6799999999999999999


Q ss_pred             eEEEEeCCeEEEecCChhHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++++|++|+++. .++.+++
T Consensus       208 ~v~~l~~G~i~~-~g~~~~~  226 (240)
T 1ji0_A          208 YGYVLETGQIVL-EGKASEL  226 (240)
T ss_dssp             EEEEEETTEEEE-EEEHHHH
T ss_pred             EEEEEECCEEEE-EcCHHHH
Confidence            999999999975 4554444

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=7.8e-35  Score=233.35  Aligned_cols=155  Identities=26%  Similarity=0.325  Sum_probs=126.3

Q ss_pred             cccCcccCCceeEEecC--------CeEEEEEecCCCCCCCccCCHHHHHHHhc----C--CCHHHHHHHHhhCCCC--c
Q psy11928          2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSGEHLTAEETPAEYLQRLF----N--LPYEKARKQLGTFGLA--G   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~--~~~~~~~~~l~~~~l~--~   65 (184)
                      +|+|+++|++|+|.+++        ++.+||+||++...+ ...|+.+++....    .  ...+++.++++.+|++  +
T Consensus        52 ~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~  130 (266)
T 2yz2_A           52 IVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDS  130 (266)
T ss_dssp             HHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHH
T ss_pred             HHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcc
Confidence            58999999999998865        346999999862112 3456666654321    1  1245688899999998  6


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      ..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++   +.|||+||||++++..+||+++
T Consensus       131 ~~~-~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~  209 (266)
T 2yz2_A          131 FKD-RVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVV  209 (266)
T ss_dssp             HTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEE
T ss_pred             ccc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence            655 589999999999999999999999999999999999999999999998654   6799999999999999999999


Q ss_pred             EEeCCeEEEecCChhHH
Q psy11928        143 VIENQTIEEIDGDFDDY  159 (184)
Q Consensus       143 ~l~~g~i~~~~~~~~~~  159 (184)
                      +|++|+++. .++.++.
T Consensus       210 ~l~~G~i~~-~g~~~~~  225 (266)
T 2yz2_A          210 VLEKGKKVF-DGTRMEF  225 (266)
T ss_dssp             EEETTEEEE-EEEHHHH
T ss_pred             EEECCEEEE-eCCHHHH
Confidence            999999864 4444443

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1e-34  Score=231.16  Aligned_cols=151  Identities=21%  Similarity=0.242  Sum_probs=124.4

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc----C----CC---HHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF----N----LP---YEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~----~----~~---~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+++|++|+|..  ++.+||+||++.  +....|+.+++....    +    ..   .+++.++++.+|+.+..+ +
T Consensus        50 ~l~Gl~~p~~G~I~~--~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~  124 (253)
T 2nq2_C           50 LLLGIHRPIQGKIEV--YQSIGFVPQFFS--SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-R  124 (253)
T ss_dssp             HHTTSSCCSEEEEEE--CSCEEEECSCCC--CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-S
T ss_pred             HHhCCCCCCCcEEEE--eccEEEEcCCCc--cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-C
Confidence            589999999999984  457999999874  334556766654321    1    12   245778899999987665 5


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN  146 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~  146 (184)
                      ++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.+.    +.|||+||||++++..+||++++|++
T Consensus       125 ~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~  204 (253)
T 2nq2_C          125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK  204 (253)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence            89999999999999999999999999999999999999999999998654    68999999999999999999999999


Q ss_pred             CeEEEecCChhHH
Q psy11928        147 QTIEEIDGDFDDY  159 (184)
Q Consensus       147 g~i~~~~~~~~~~  159 (184)
                      |+ +. .++.+++
T Consensus       205 G~-~~-~g~~~~~  215 (253)
T 2nq2_C          205 QN-FK-FGETRNI  215 (253)
T ss_dssp             TE-EE-EEEHHHH
T ss_pred             Ce-Ee-cCCHHHH
Confidence            99 54 4555444

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.3e-34  Score=230.29  Aligned_cols=151  Identities=19%  Similarity=0.220  Sum_probs=127.1

Q ss_pred             cccCcccCCceeEEecC--------CeEEE-EEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCC-cccc
Q psy11928          2 YAHCDLQPQQGELKKNH--------RLRIG-RFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLA-GHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------~~~ig-~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~-~~~~   68 (184)
                      .|+|++ |++|+|.+++        ++.+| |+||++.  +  ..|+.+++...   +....+++.++++.+|++ +..+
T Consensus        49 ~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~  123 (263)
T 2pjz_A           49 AISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR  123 (263)
T ss_dssp             HHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG
T ss_pred             HHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc
Confidence            589999 9999998765        34699 9999874  3  55666655321   234466788999999998 6665


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcC-eEEEEeCC
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTEC-TLWVIENQ  147 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~-~i~~l~~g  147 (184)
                       +++++|||||||||+|||||+.+|+++||||||++||+.++..+.+.|.++..|||+||||++++..+|| ++++|++|
T Consensus       124 -~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G  202 (263)
T 2pjz_A          124 -RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGN  202 (263)
T ss_dssp             -SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred             -CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECC
Confidence             5899999999999999999999999999999999999999999999999875599999999999999999 99999999


Q ss_pred             eEEEecCChhHH
Q psy11928        148 TIEEIDGDFDDY  159 (184)
Q Consensus       148 ~i~~~~~~~~~~  159 (184)
                      +++. .++.+++
T Consensus       203 ~i~~-~g~~~~l  213 (263)
T 2pjz_A          203 RLQG-PISVSEL  213 (263)
T ss_dssp             EEEE-EEEHHHH
T ss_pred             EEEE-ecCHHHH
Confidence            9875 4555443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=2.3e-34  Score=228.61  Aligned_cols=153  Identities=20%  Similarity=0.275  Sum_probs=127.6

Q ss_pred             cccCcccCCceeEEecCC-----------eEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNHR-----------LRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~-----------~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      .|+|+++|+ |+|.+++.           +.+||+||++.  +....|+.+++....  ....+++.++++.+|+++..+
T Consensus        45 ~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~  121 (249)
T 2qi9_C           45 RMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG  121 (249)
T ss_dssp             HHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT
T ss_pred             HHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc
Confidence            589999999 99987652           35999999874  344567777765421  123567888999999987665


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCC-------EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhc
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPD-------VIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~-------illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~  138 (184)
                       +++.+|||||||||+|||||+.+|+       +|||||||+|||+.++..+.+.|+++   +.|||+||||++++..+|
T Consensus       122 -~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~  200 (249)
T 2qi9_C          122 -RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHA  200 (249)
T ss_dssp             -SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred             -CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence             5899999999999999999999999       99999999999999999999998754   679999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      |++++|++|+++. .++.+++
T Consensus       201 d~v~~l~~G~i~~-~g~~~~~  220 (249)
T 2qi9_C          201 HRAWLLKGGKMLA-SGRREEV  220 (249)
T ss_dssp             SEEEEEETTEEEE-EEEHHHH
T ss_pred             CEEEEEECCEEEE-eCCHHHH
Confidence            9999999999875 4555444

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=3.2e-35  Score=237.09  Aligned_cols=156  Identities=21%  Similarity=0.295  Sum_probs=125.1

Q ss_pred             cccCcccCCceeEEecC-------------CeEEEEEecCCCCCCCccCCHHHHHHHh-------cC-CC---HHHHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH-------------RLRIGRFDQHSGEHLTAEETPAEYLQRL-------FN-LP---YEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-------~~-~~---~~~~~~~   57 (184)
                      +|+|+++|++|+|.+++             ++.|||+||++...+....|+.+++...       ++ ..   .+++.++
T Consensus        66 ~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~  145 (279)
T 2ihy_A           66 ILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQL  145 (279)
T ss_dssp             HHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHH
T ss_pred             HHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHH
Confidence            58999999999998764             1359999998631122234666665431       11 11   2356788


Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEE--EEEecCHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGV--IIVSHDER  132 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~ti--iivsHd~~  132 (184)
                      ++.+|+++..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++   +.||  |+||||++
T Consensus       146 l~~~gl~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~  224 (279)
T 2ihy_A          146 LKLVGMSAKAQ-QYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE  224 (279)
T ss_dssp             HHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG
T ss_pred             HHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH
Confidence            99999986665 589999999999999999999999999999999999999999999998654   6799  99999999


Q ss_pred             HHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        133 LIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ++..+||++++|++|+++. .++.+++
T Consensus       225 ~~~~~~d~v~~l~~G~i~~-~g~~~~~  250 (279)
T 2ihy_A          225 EITANFSKILLLKDGQSIQ-QGAVEDI  250 (279)
T ss_dssp             GCCTTCCEEEEEETTEEEE-EEEHHHH
T ss_pred             HHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            9999999999999999975 4555444

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1.5e-33  Score=223.64  Aligned_cols=153  Identities=24%  Similarity=0.328  Sum_probs=121.3

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH-   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-   68 (184)
                      +|+|+++|++|+|.+++           ++.|||+||++.  +.. .|+.+++.... ....+++.++++.+++.+... 
T Consensus        54 ~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~  130 (247)
T 2ff7_A           54 LIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE  130 (247)
T ss_dssp             HHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHT
T ss_pred             HHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh
Confidence            58999999999998764           235999999874  333 47777764321 223455666777777654332 


Q ss_pred             ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                               .+++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|.+.  +.|||+||||++.+.. 
T Consensus       131 ~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-  209 (247)
T 2ff7_A          131 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-  209 (247)
T ss_dssp             STTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-
T ss_pred             CcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-
Confidence                     1246899999999999999999999999999999999999999999999765  7899999999999865 


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|+++. .++.++.
T Consensus       210 ~d~v~~l~~G~i~~-~g~~~~l  230 (247)
T 2ff7_A          210 ADRIIVMEKGKIVE-QGKHKEL  230 (247)
T ss_dssp             SSEEEEEETTEEEE-EECHHHH
T ss_pred             CCEEEEEECCEEEE-ECCHHHH
Confidence            99999999999975 4554443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1.6e-33  Score=226.24  Aligned_cols=153  Identities=20%  Similarity=0.266  Sum_probs=121.3

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcC-C-CHH---------HHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFN-L-PYE---------KARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~-~~~---------~~~~~l~   59 (184)
                      +|+|+++|++|+|.+++           ++.|||+||++.  +.. .|+.+++..... . ...         .+.++++
T Consensus        64 ~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~  140 (271)
T 2ixe_A           64 LLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS  140 (271)
T ss_dssp             HHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHH
T ss_pred             HHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHH
Confidence            58999999999998764           235999999874  333 477777654211 1 101         1234566


Q ss_pred             hC--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928         60 TF--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL  133 (184)
Q Consensus        60 ~~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~  133 (184)
                      .+  |+....+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+.    +.|||+||||+++
T Consensus       141 ~l~~gl~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~  219 (271)
T 2ixe_A          141 GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL  219 (271)
T ss_dssp             HSTTGGGSBCC-GGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH
T ss_pred             hhhcchhhhhc-CCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence            66  6765554 579999999999999999999999999999999999999999999999765    5799999999999


Q ss_pred             HHhhcCeEEEEeCCeEEEecCChhHHH
Q psy11928        134 IRDTECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      +.. ||++++|++|+++. .++.+++.
T Consensus       220 ~~~-~d~v~~l~~G~i~~-~g~~~~l~  244 (271)
T 2ixe_A          220 AER-AHHILFLKEGSVCE-QGTHLQLM  244 (271)
T ss_dssp             HTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred             HHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence            975 99999999999975 45655543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=3.3e-33  Score=227.80  Aligned_cols=155  Identities=24%  Similarity=0.301  Sum_probs=122.3

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc-
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH-   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-   68 (184)
                      .|+|+++|++|+|.+++           ++.|||+||++.  +. ..|+.+++.... ....+++.+.++.+++.+... 
T Consensus        99 ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~  175 (306)
T 3nh6_A           99 LLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV--LF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMA  175 (306)
T ss_dssp             HHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCC--CC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCc--cC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHh
Confidence            58999999999999865           346999999974  33 347888775432 223445555555555433221 


Q ss_pred             ---------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         69 ---------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        69 ---------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                               .++..+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.+.  +.|+|+|||+++.+.. 
T Consensus       176 lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-  254 (306)
T 3nh6_A          176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-  254 (306)
T ss_dssp             STTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-
T ss_pred             ccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-
Confidence                     1356899999999999999999999999999999999999999999999764  6799999999999987 


Q ss_pred             cCeEEEEeCCeEEEecCChhHHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      ||+|++|++|++++ .|+.+++.+
T Consensus       255 aD~i~vl~~G~iv~-~G~~~el~~  277 (306)
T 3nh6_A          255 ADQILVIKDGCIVE-RGRHEALLS  277 (306)
T ss_dssp             CSEEEEEETTEEEE-EECHHHHHH
T ss_pred             CCEEEEEECCEEEE-ECCHHHHHh
Confidence            99999999999986 566655443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=8e-34  Score=225.56  Aligned_cols=152  Identities=20%  Similarity=0.296  Sum_probs=116.3

Q ss_pred             cccCc--ccCCceeEEecCC------------eEEEEEecCCCCCCCccCCHHHHHHH----hcC--CC----HHHHHHH
Q psy11928          2 YAHCD--LQPQQGELKKNHR------------LRIGRFDQHSGEHLTAEETPAEYLQR----LFN--LP----YEKARKQ   57 (184)
Q Consensus         2 ~~~G~--~~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~~~~~~~~~----~~~--~~----~~~~~~~   57 (184)
                      +|+|+  ++|++|+|.+++.            ..++|+||++.  +....++.+++..    ..+  ..    .+++.++
T Consensus        48 ~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~  125 (250)
T 2d2e_A           48 ILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKA  125 (250)
T ss_dssp             HHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             HHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHH
Confidence            57898  7899999987641            23889999874  3344455554421    111  11    2456788


Q ss_pred             HhhCCCC-cccccccccC-CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHH
Q psy11928         58 LGTFGLA-GHAHTIKMKD-LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDER  132 (184)
Q Consensus        58 l~~~~l~-~~~~~~~~~~-LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~  132 (184)
                      ++.+|++ +.. ++++++ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++   +.|||+||||++
T Consensus       126 l~~~gl~~~~~-~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~  204 (250)
T 2d2e_A          126 LELLDWDESYL-SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR  204 (250)
T ss_dssp             HHHHTCCGGGG-GSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred             HHHcCCChhHh-cCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            9999994 444 458898 9999999999999999999999999999999999999999999765   579999999999


Q ss_pred             HHHhh-cCeEEEEeCCeEEEecCChh
Q psy11928        133 LIRDT-ECTLWVIENQTIEEIDGDFD  157 (184)
Q Consensus       133 ~~~~~-~~~i~~l~~g~i~~~~~~~~  157 (184)
                      ++..+ ||++++|++|+++. .++.+
T Consensus       205 ~~~~~~~d~v~~l~~G~i~~-~g~~~  229 (250)
T 2d2e_A          205 ILNYIQPDKVHVMMDGRVVA-TGGPE  229 (250)
T ss_dssp             GGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred             HHHHhcCCEEEEEECCEEEE-EeCHH
Confidence            99888 59999999999975 45544

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=1.4e-33  Score=223.21  Aligned_cols=154  Identities=25%  Similarity=0.318  Sum_probs=123.4

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      +|+|+++|++|+|.+++           ++.+||+||++.  +.. .|+.+++...  .....+++.++++.+++.+...
T Consensus        47 ~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~  123 (243)
T 1mv5_A           47 LLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE  123 (243)
T ss_dssp             HHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTT
T ss_pred             HHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHH
Confidence            58999999999998753           345999999974  333 3777776432  1234556777888888765432


Q ss_pred             c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      .          +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+.  +.|||+||||++.+. 
T Consensus       124 ~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-  202 (243)
T 1mv5_A          124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-  202 (243)
T ss_dssp             SSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-
T ss_pred             hCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-
Confidence            1          246899999999999999999999999999999999999999999988764  689999999999986 


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      .||++++|++|+++. .++.+++.
T Consensus       203 ~~d~v~~l~~G~i~~-~g~~~~~~  225 (243)
T 1mv5_A          203 DADKIYFIEKGQITG-SGKHNELV  225 (243)
T ss_dssp             HCSEEEEEETTEECC-CSCHHHHH
T ss_pred             hCCEEEEEECCEEEE-eCCHHHHH
Confidence            599999999999864 56665553

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=3.7e-33  Score=223.71  Aligned_cols=154  Identities=22%  Similarity=0.293  Sum_probs=119.9

Q ss_pred             cccCc--ccCCceeEEecCC------------eEEEEEecCCCCCCCccCCHHHHHHH----h---cC---CCH----HH
Q psy11928          2 YAHCD--LQPQQGELKKNHR------------LRIGRFDQHSGEHLTAEETPAEYLQR----L---FN---LPY----EK   53 (184)
Q Consensus         2 ~~~G~--~~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~~~~~~~~~----~---~~---~~~----~~   53 (184)
                      +|+|+  .+|++|+|.+++.            ..+||+||++.  +....++.+++..    .   ..   ...    ++
T Consensus        65 ~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (267)
T 2zu0_C           65 TLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL  142 (267)
T ss_dssp             HHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHH
T ss_pred             HHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHH
Confidence            57898  4799999987641            23999999874  3344455444321    0   11   122    35


Q ss_pred             HHHHHhhCCCCccccccccc-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEec
Q psy11928         54 ARKQLGTFGLAGHAHTIKMK-DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSH  129 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~-~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsH  129 (184)
                      +.++++.+|+.....++++. +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++   +.|||+|||
T Consensus       143 ~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH  222 (267)
T 2zu0_C          143 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH  222 (267)
T ss_dssp             HHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred             HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence            67889999996433345777 59999999999999999999999999999999999999999999765   579999999


Q ss_pred             CHHHHHhh-cCeEEEEeCCeEEEecCChhH
Q psy11928        130 DERLIRDT-ECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       130 d~~~~~~~-~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      |++++..+ ||++++|++|+++. .++.++
T Consensus       223 d~~~~~~~~~d~v~~l~~G~i~~-~g~~~~  251 (267)
T 2zu0_C          223 YQRILDYIKPDYVHVLYQGRIVK-SGDFTL  251 (267)
T ss_dssp             SGGGGGTSCCSEEEEEETTEEEE-EECTTH
T ss_pred             CHHHHHhhcCCEEEEEECCEEEE-EcCHHH
Confidence            99999886 89999999999975 445444

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.8e-32  Score=215.17  Aligned_cols=151  Identities=21%  Similarity=0.267  Sum_probs=116.1

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc----------ccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH----------TIK   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~   71 (184)
                      +|+|+++|++|+|.+++  .+||+||++.  +... |+.+++.........+..+.++.+++.+...          .++
T Consensus        53 ~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  127 (229)
T 2pze_A           53 MIMGELEPSEGKIKHSG--RISFCSQFSW--IMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG  127 (229)
T ss_dssp             HHTTSSCCSEEEEEECS--CEEEECSSCC--CCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTT
T ss_pred             HHhCCCcCCccEEEECC--EEEEEecCCc--ccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCC
Confidence            58999999999999876  5999999874  3333 7888775432222333344444444432111          124


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-Hhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-NEY--KGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      +.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.+ .+.  +.|||+||||++++. .||++++|++|+
T Consensus       128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~  206 (229)
T 2pze_A          128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS  206 (229)
T ss_dssp             CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTE
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCE
Confidence            6899999999999999999999999999999999999999999964 433  679999999999986 599999999999


Q ss_pred             EEEecCChhHH
Q psy11928        149 IEEIDGDFDDY  159 (184)
Q Consensus       149 i~~~~~~~~~~  159 (184)
                      ++. .++.++.
T Consensus       207 i~~-~g~~~~~  216 (229)
T 2pze_A          207 SYF-YGTFSEL  216 (229)
T ss_dssp             EEE-EECHHHH
T ss_pred             EEE-ECCHHHH
Confidence            975 4555443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=8.9e-33  Score=217.97  Aligned_cols=150  Identities=19%  Similarity=0.251  Sum_probs=115.6

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCC------c-----ccccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLA------G-----HAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~-----~~~~~   70 (184)
                      +|+|+++|++|+|.+++  .+||+||++.  + ...|+.+++........+...++++.+++.      +     .. .+
T Consensus        50 ~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~  123 (237)
T 2cbz_A           50 ALLAEMDKVEGHVAIKG--SVAYVPQQAW--I-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI-GE  123 (237)
T ss_dssp             HHTTCSEEEEEEEEECS--CEEEECSSCC--C-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEE-ST
T ss_pred             HHhcCCCCCCceEEECC--EEEEEcCCCc--C-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccc-cC
Confidence            58999999999999876  5999999973  3 355777776543222222222333333221      1     12 35


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---h--cCcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAIN---E--YKGGVIIVSHDERLIRDTECTLWVIE  145 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~---~--~~~tiiivsHd~~~~~~~~~~i~~l~  145 (184)
                      ++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.+.   +  .+.|||+||||++++. .||++++|+
T Consensus       124 ~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~  202 (237)
T 2cbz_A          124 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMS  202 (237)
T ss_dssp             TSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEe
Confidence            789999999999999999999999999999999999999999999884   2  2679999999999985 699999999


Q ss_pred             CCeEEEecCChhHH
Q psy11928        146 NQTIEEIDGDFDDY  159 (184)
Q Consensus       146 ~g~i~~~~~~~~~~  159 (184)
                      +|+++. .++.+++
T Consensus       203 ~G~i~~-~g~~~~~  215 (237)
T 2cbz_A          203 GGKISE-MGSYQEL  215 (237)
T ss_dssp             TTEEEE-EECHHHH
T ss_pred             CCEEEE-eCCHHHH
Confidence            999975 5565554

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=2e-33  Score=218.51  Aligned_cols=143  Identities=25%  Similarity=0.304  Sum_probs=116.1

Q ss_pred             cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHHH---hc--CCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQR---LF--NLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~--~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+++|++|+|.+++      +..+||+||++.  +....|+.+++..   .+  ....+++.++++.+|++.. + +
T Consensus        54 ~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~-~  129 (214)
T 1sgw_A           54 TISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-K-K  129 (214)
T ss_dssp             HHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-T-S
T ss_pred             HHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-C-C
Confidence            58999999999999865      246999999874  3344566665432   11  2235678889999999866 4 6


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      ++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|.+.   +.|||+||||++++..+|+++++ -.|
T Consensus       130 ~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~  208 (214)
T 1sgw_A          130 KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YST  208 (214)
T ss_dssp             BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCC
Confidence            89999999999999999999999999999999999999999999988754   57999999999999999988764 345


Q ss_pred             eE
Q psy11928        148 TI  149 (184)
Q Consensus       148 ~i  149 (184)
                      +|
T Consensus       209 ~~  210 (214)
T 1sgw_A          209 KI  210 (214)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.98  E-value=5.2e-32  Score=216.29  Aligned_cols=152  Identities=24%  Similarity=0.285  Sum_probs=120.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccc--
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHA--   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~--   67 (184)
                      +|+|+++| +|+|.+++           ++.|||+||++.  +.. .|+.+++.... ....+++.+.++.+++.+..  
T Consensus        65 ~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~  140 (260)
T 2ghi_A           65 LLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTI--LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEA  140 (260)
T ss_dssp             HHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHT
T ss_pred             HHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCc--ccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHh
Confidence            58899987 89998764           235999999974  333 47777765421 22345566777777764321  


Q ss_pred             --------ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         68 --------HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        68 --------~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                              ..+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+||||++.+. .
T Consensus       141 l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~  219 (260)
T 2ghi_A          141 LPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-S  219 (260)
T ss_dssp             STTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-T
T ss_pred             ccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-h
Confidence                    12367899999999999999999999999999999999999999999999765  579999999999986 4


Q ss_pred             cCeEEEEeCCeEEEecCChhHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||++++|++|+++. .++.++.
T Consensus       220 ~d~i~~l~~G~i~~-~g~~~~l  240 (260)
T 2ghi_A          220 AESIILLNKGKIVE-KGTHKDL  240 (260)
T ss_dssp             CSEEEEEETTEEEE-EECHHHH
T ss_pred             CCEEEEEECCEEEE-ECCHHHH
Confidence            99999999999975 5555554

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.7e-32  Score=228.85  Aligned_cols=152  Identities=19%  Similarity=0.189  Sum_probs=126.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      .|+|+++ ++|+|.+++           ++.+||+||++.  +.. .|+.+++........+++.++++.+++.+..+ +
T Consensus        66 ~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~--lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~-~  140 (390)
T 3gd7_A           66 AFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVF--IFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIE-Q  140 (390)
T ss_dssp             HHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCC--CCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHT-T
T ss_pred             HHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcc--cCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHh-h
Confidence            5789987 899999864           256999999974  333 47777765333345677889999999987665 5


Q ss_pred             cccC-----------CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         71 KMKD-----------LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        71 ~~~~-----------LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                      ++.+           |||||||||+|||||+.+|++|||||||++||+..+..+.+.|++.  +.|+|+||||++.+. .
T Consensus       141 ~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~  219 (390)
T 3gd7_A          141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-E  219 (390)
T ss_dssp             STTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-T
T ss_pred             cccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-h
Confidence            7887           9999999999999999999999999999999999999999999865  579999999987665 5


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||+|++|++|+++. .+++.+++
T Consensus       220 aDri~vl~~G~i~~-~g~~~el~  241 (390)
T 3gd7_A          220 CDQFLVIEENKVRQ-YDSILELY  241 (390)
T ss_dssp             CSEEEEEETTEEEE-ESSHHHHH
T ss_pred             CCEEEEEECCEEEE-ECCHHHHH
Confidence            99999999999976 56665544

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.97  E-value=4.2e-31  Score=214.00  Aligned_cols=150  Identities=21%  Similarity=0.279  Sum_probs=114.9

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccc----------ccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAH----------TIK   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~   71 (184)
                      +|+|+++|++|+|.+++  ++||+||++.  +.. .|+.+++. ..........+.++.+++.....          .++
T Consensus        83 ~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~~-~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  156 (290)
T 2bbs_A           83 MIMGELEPSEGKIKHSG--RISFCSQNSW--IMP-GTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG  156 (290)
T ss_dssp             HHTTSSCEEEEEEECCS--CEEEECSSCC--CCS-SBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC---
T ss_pred             HHhcCCCCCCcEEEECC--EEEEEeCCCc--cCc-ccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCc
Confidence            58999999999999876  5999999874  333 37777775 22222333444555555532211          123


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-Hhc--CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-NEY--KGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~--~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      +.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.+ .+.  +.|||+||||++++. .||++++|++|+
T Consensus       157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~  235 (290)
T 2bbs_A          157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS  235 (290)
T ss_dssp             -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTE
T ss_pred             cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCe
Confidence            5899999999999999999999999999999999999999999964 333  679999999999986 599999999999


Q ss_pred             EEEecCChhHH
Q psy11928        149 IEEIDGDFDDY  159 (184)
Q Consensus       149 i~~~~~~~~~~  159 (184)
                      ++. .++.++.
T Consensus       236 i~~-~g~~~~l  245 (290)
T 2bbs_A          236 SYF-YGTFSEL  245 (290)
T ss_dssp             EEE-EECHHHH
T ss_pred             EEE-eCCHHHH
Confidence            975 5565554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.97  E-value=7.1e-31  Score=230.55  Aligned_cols=154  Identities=25%  Similarity=0.281  Sum_probs=124.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      .|+|+++|++|+|.+++           ++.+||+||++.  +.. .|+.+++....  ..+.+++.+.++.+++.+...
T Consensus       388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~  464 (582)
T 3b5x_A          388 LFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIE  464 (582)
T ss_pred             HHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHH
Confidence            57899999999998764           346999999974  333 47777765422  334567778888887754332


Q ss_pred             c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      .          ++..+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+.  +.|+|+||||++.+. 
T Consensus       465 ~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-  543 (582)
T 3b5x_A          465 NMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-  543 (582)
T ss_pred             hCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-
Confidence            1          245899999999999999999999999999999999999999999999765  689999999999987 


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      .||++++|++|++++ .|+.++..
T Consensus       544 ~~d~i~~l~~G~i~~-~g~~~~l~  566 (582)
T 3b5x_A          544 QADEILVVDEGEIIE-RGRHADLL  566 (582)
T ss_pred             hCCEEEEEECCEEEE-ECCHHHHH
Confidence            699999999999976 56665543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.97  E-value=6.8e-31  Score=230.66  Aligned_cols=154  Identities=23%  Similarity=0.265  Sum_probs=125.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      .|+|+++|++|+|.+++           ++.+||+||++.  +.. .|+.+++....  ..+.+++.+.++.+++.+...
T Consensus       388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~  464 (582)
T 3b60_A          388 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFIN  464 (582)
T ss_dssp             HHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHH
T ss_pred             HHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHH
Confidence            57999999999998865           236999999984  333 47888776432  345677888888888754332


Q ss_pred             c----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         69 T----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        69 ~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                      .          ++..+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+.  +.|+|+|||+++.+. 
T Consensus       465 ~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-  543 (582)
T 3b60_A          465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-  543 (582)
T ss_dssp             HSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-
T ss_pred             hccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-
Confidence            1          245899999999999999999999999999999999999999999998764  689999999999986 


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      .||++++|++|++++ .|+.++..
T Consensus       544 ~~d~i~~l~~G~i~~-~g~~~~l~  566 (582)
T 3b60_A          544 QADEIVVVEDGIIVE-RGTHSELL  566 (582)
T ss_dssp             TCSEEEEEETTEEEE-EECHHHHH
T ss_pred             hCCEEEEEECCEEEE-ecCHHHHH
Confidence            699999999999976 56665543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.97  E-value=1.2e-30  Score=227.14  Aligned_cols=153  Identities=25%  Similarity=0.274  Sum_probs=122.7

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh--cC-CCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL--FN-LPYEKARKQLGTFGLAGHAHTIKMKDLSGG   78 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG   78 (184)
                      +|+|+++|++|+|.+  ...+||+||++.  .....++.+++...  .. ...+.+.++++.+++.+..+ +++.+||||
T Consensus       331 ~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGG  405 (538)
T 1yqt_A          331 MLAGVEEPTEGKIEW--DLTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYD-REVNELSGG  405 (538)
T ss_dssp             HHHTSSCCSBCCCCC--CCCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTT-SBGGGCCHH
T ss_pred             HHhCCCCCCCeEEEE--CceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhc-CChhhCCHH
Confidence            588999999999986  457999999874  22344555443321  11 13456788999999976554 689999999


Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC--CeEEEe
Q psy11928         79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN--QTIEEI  152 (184)
Q Consensus        79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~--g~i~~~  152 (184)
                      |||||+|||||+.+|++|||||||+|||+.++..+.+.|+++    +.|||+||||++++..+||++++|++  |++.. 
T Consensus       406 e~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~-  484 (538)
T 1yqt_A          406 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGR-  484 (538)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE-
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEee-
Confidence            999999999999999999999999999999999999998753    78999999999999999999999986  55543 


Q ss_pred             cCChhHHH
Q psy11928        153 DGDFDDYR  160 (184)
Q Consensus       153 ~~~~~~~~  160 (184)
                      .+++++..
T Consensus       485 ~g~~~~~~  492 (538)
T 1yqt_A          485 ALPPMGMR  492 (538)
T ss_dssp             ECCCEEHH
T ss_pred             cCCHHHHH
Confidence            45554443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.97  E-value=2e-30  Score=227.51  Aligned_cols=155  Identities=26%  Similarity=0.293  Sum_probs=122.9

Q ss_pred             CcccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcccc
Q psy11928          1 MYAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      +.|+|+++|++|+|.+++           ++++||+||++.  +.. .|+.+++.... ....+++.+.++..++.+...
T Consensus       385 ~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (578)
T 4a82_A          385 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI--LFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIM  461 (578)
T ss_dssp             TTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC--CCS-SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCc--cCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence            368999999999999875           346999999974  333 37888775432 234555666666665543221


Q ss_pred             ----------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         69 ----------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        69 ----------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                                .++..+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+.  ++|+|+||||++.+..
T Consensus       462 ~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~  541 (578)
T 4a82_A          462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH  541 (578)
T ss_dssp             TSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT
T ss_pred             hCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence                      1245799999999999999999999999999999999999999999998764  5799999999999865


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                       ||++++|++|++++ .|+.++..
T Consensus       542 -~d~i~~l~~G~i~~-~g~~~el~  563 (578)
T 4a82_A          542 -ADKIVVIENGHIVE-TGTHRELI  563 (578)
T ss_dssp             -CSEEEEEETTEEEE-EECHHHHH
T ss_pred             -CCEEEEEECCEEEE-ECCHHHHH
Confidence             99999999999986 66666554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.97  E-value=1.6e-30  Score=228.95  Aligned_cols=153  Identities=25%  Similarity=0.270  Sum_probs=122.4

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHh-c-C-CCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRL-F-N-LPYEKARKQLGTFGLAGHAHTIKMKDLSGG   78 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG   78 (184)
                      .|+|+++|++|+|.+  ...+||+||++.  .....++.+++... . . ...+.+.++++.+|+.+..+ +++++||||
T Consensus       401 ~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGG  475 (607)
T 3bk7_A          401 MLAGVEEPTEGKVEW--DLTVAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGG  475 (607)
T ss_dssp             HHHTSSCCSBSCCCC--CCCEEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTT-SBGGGCCHH
T ss_pred             HHhcCCCCCceEEEE--eeEEEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhc-CChhhCCHH
Confidence            578999999999986  457999999874  22344555544321 0 0 12355778899999986554 689999999


Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC--CeEEEe
Q psy11928         79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN--QTIEEI  152 (184)
Q Consensus        79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~--g~i~~~  152 (184)
                      |||||+|||||+.+|++|||||||+|||+.++..+.+.|+++    +.|||+||||++++..+||++++|++  |.+.. 
T Consensus       476 e~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~-  554 (607)
T 3bk7_A          476 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR-  554 (607)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE-
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEe-
Confidence            999999999999999999999999999999999999998753    78999999999999999999999985  65543 


Q ss_pred             cCChhHHH
Q psy11928        153 DGDFDDYR  160 (184)
Q Consensus       153 ~~~~~~~~  160 (184)
                      .+++.+..
T Consensus       555 ~g~p~~~~  562 (607)
T 3bk7_A          555 ALPPMGMR  562 (607)
T ss_dssp             ECCCEEHH
T ss_pred             cCCHHHHH
Confidence            45554443

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.97  E-value=1.4e-30  Score=229.34  Aligned_cols=154  Identities=23%  Similarity=0.240  Sum_probs=123.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .|+|+++|++|+|.+++           ++++||+||++.  +. ..|+.+++.... ..+.+++.+.++.+++.+....
T Consensus       400 ~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (598)
T 3qf4_B          400 LLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI--LF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKH  476 (598)
T ss_dssp             HHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC--CC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHT
T ss_pred             HHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHh
Confidence            57899999999999875           346999999974  33 347888775421 2334556677777666543322


Q ss_pred             ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                                .+..+||||||||++||||++.+|+++||||||++||+.+...+.+.+.+.  +.|+|+|||+++.+.. 
T Consensus       477 ~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-  555 (598)
T 3qf4_B          477 LPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-  555 (598)
T ss_dssp             STTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-
T ss_pred             ccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-
Confidence                      123789999999999999999999999999999999999999999998764  7899999999999976 


Q ss_pred             cCeEEEEeCCeEEEecCChhHHH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      ||+|++|++|++++ .|+.++..
T Consensus       556 ~d~i~~l~~G~i~~-~g~~~~l~  577 (598)
T 3qf4_B          556 ADLIIVLRDGEIVE-MGKHDELI  577 (598)
T ss_dssp             CSEEEEECSSSEEE-CSCHHHHH
T ss_pred             CCEEEEEECCEEEE-ECCHHHHH
Confidence            99999999999986 67766654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.97  E-value=3.1e-30  Score=226.72  Aligned_cols=154  Identities=18%  Similarity=0.241  Sum_probs=121.8

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCC-------
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFG-------   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-------   62 (184)
                      .|+|+++|++|+|.+++           +.++||+||++.  +. ..|+.+++.... ....+++.+.++..+       
T Consensus       388 ~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~  464 (587)
T 3qf4_A          388 LIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV--LF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS  464 (587)
T ss_dssp             TTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCC--CC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHT
T ss_pred             HHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCc--Cc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHh
Confidence            58999999999999865           346999999984  33 337778775322 233444444444443       


Q ss_pred             ----CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         63 ----LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        63 ----l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                          ++.... +++.+||||||||++||||++.+|+++||||||++||+.+...+.+.+++.  ++|+|+|||+++.+. 
T Consensus       465 l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-  542 (587)
T 3qf4_A          465 LPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-  542 (587)
T ss_dssp             SSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-
T ss_pred             cccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-
Confidence                333333 467899999999999999999999999999999999999999999998764  689999999999986 


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      .||+|++|++|++++ .|+.++..+
T Consensus       543 ~~d~i~vl~~G~i~~-~g~~~el~~  566 (587)
T 3qf4_A          543 LADKILVLHEGKVAG-FGTHKELLE  566 (587)
T ss_dssp             TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred             hCCEEEEEECCEEEE-ECCHHHHHh
Confidence            799999999999986 566666543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.97  E-value=3.5e-30  Score=224.11  Aligned_cols=142  Identities=19%  Similarity=0.237  Sum_probs=117.6

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcC----CCHHHHHHHHhhCCCCcccccccccCCCh
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN----LPYEKARKQLGTFGLAGHAHTIKMKDLSG   77 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSg   77 (184)
                      .|+|+++|++|+|... ...++|+||+...  ....++.+++.....    .....+.++++.+++.+..+ +++.+|||
T Consensus       313 ~l~Gl~~p~~G~i~~~-~~~i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSG  388 (538)
T 3ozx_A          313 ILVGEITADEGSVTPE-KQILSYKPQRIFP--NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-SNVNDLSG  388 (538)
T ss_dssp             HHTTSSCCSBCCEESS-CCCEEEECSSCCC--CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-SBGGGCCH
T ss_pred             HHhCCCCCCCcEEEEC-CeeeEeechhccc--ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-CChhhCCH
Confidence            5899999999999865 4579999998642  224566665543211    12345678899999987665 58999999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      ||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++    +.|||+||||++++..+||++++|+++
T Consensus       389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~  462 (538)
T 3ozx_A          389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE  462 (538)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            9999999999999999999999999999999999999988653    689999999999999999999999863

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-29  Score=221.47  Aligned_cols=153  Identities=19%  Similarity=0.215  Sum_probs=121.9

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhc-C--CCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLF-N--LPYEKARKQLGTFGLAGHAHTIKMKDLSGG   78 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG   78 (184)
                      .|+|+++|++|+..  ....++|+||+....+  ..++.+++.... .  .....+.++++.+++.+..+ +++.+||||
T Consensus       397 ~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~~~--~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSGG  471 (608)
T 3j16_B          397 LLAGALKPDEGQDI--PKLNVSMKPQKIAPKF--PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-QEVQHLSGG  471 (608)
T ss_dssp             HHHTSSCCSBCCCC--CSCCEEEECSSCCCCC--CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSS-SBSSSCCHH
T ss_pred             HHhcCCCCCCCcCc--cCCcEEEecccccccC--CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhc-CChhhCCHH
Confidence            57999999999852  2457999999864222  335555543221 1  23455678899999987665 589999999


Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEeC--CeEEEe
Q psy11928         79 QKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIEN--QTIEEI  152 (184)
Q Consensus        79 ~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~~--g~i~~~  152 (184)
                      |||||+|||||+.+|++|||||||+|||+.++..+.++|+++    +.|||+||||++++..+|||+++|++  |++.. 
T Consensus       472 qkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~-  550 (608)
T 3j16_B          472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH-  550 (608)
T ss_dssp             HHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE-
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe-
Confidence            999999999999999999999999999999999998888653    78999999999999999999999986  77764 


Q ss_pred             cCChhHHH
Q psy11928        153 DGDFDDYR  160 (184)
Q Consensus       153 ~~~~~~~~  160 (184)
                      .+++.+..
T Consensus       551 ~g~p~~~~  558 (608)
T 3j16_B          551 ARAPESLL  558 (608)
T ss_dssp             CCCCEEHH
T ss_pred             cCChHHHh
Confidence            55555443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.96  E-value=3.1e-29  Score=228.87  Aligned_cols=101  Identities=33%  Similarity=0.633  Sum_probs=92.7

Q ss_pred             HHHHHHHHhhCCCCccc-ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11928         51 YEKARKQLGTFGLAGHA-HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSH  129 (184)
Q Consensus        51 ~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH  129 (184)
                      .+++.++++.+|+.... .++++++|||||||||+|||||+.+|++|||||||||||+.++..+.+.|++++.|||+|||
T Consensus       877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISH  956 (986)
T 2iw3_A          877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH  956 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECS
T ss_pred             HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEEC
Confidence            45678899999997532 34589999999999999999999999999999999999999999999999999899999999


Q ss_pred             CHHHHHhhcCeEEEEeCCeEEE
Q psy11928        130 DERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      |++++..+||++++|++|+++.
T Consensus       957 D~e~v~~l~DrVivL~~G~Iv~  978 (986)
T 2iw3_A          957 SAEFTKNLTEEVWAVKDGRMTP  978 (986)
T ss_dssp             CHHHHTTTCCEEECCBTTBCCC
T ss_pred             CHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.95  E-value=1.7e-28  Score=213.64  Aligned_cols=142  Identities=22%  Similarity=0.216  Sum_probs=112.4

Q ss_pred             cccCcccCCceeE---------EecC-------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHHHH
Q psy11928          2 YAHCDLQPQQGEL---------KKNH-------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~p~~G~i---------~~~~-------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~   57 (184)
                      +|+|+++|++|++         .+.+             ...+++++|...  +.+. ..++.+++....  ..+++.++
T Consensus        66 ~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~v~e~~~~~~--~~~~~~~~  142 (538)
T 1yqt_A           66 ILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAV-KGKVIELLKKAD--ETGKLEEV  142 (538)
T ss_dssp             HHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGC-CSBHHHHHHHHC--SSSCHHHH
T ss_pred             HHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhh-hccHHHHHhhhh--HHHHHHHH
Confidence            6899999999995         1111             235788888642  1111 125555543221  12457789


Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI  134 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~  134 (184)
                      ++.+|++...+ +++++|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++   +.|||+||||++++
T Consensus       143 l~~lgl~~~~~-~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~  221 (538)
T 1yqt_A          143 VKALELENVLE-REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL  221 (538)
T ss_dssp             HHHTTCTTTTT-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             HHHcCCChhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            99999987664 589999999999999999999999999999999999999999999988754   78999999999999


Q ss_pred             HhhcCeEEEEeCC
Q psy11928        135 RDTECTLWVIENQ  147 (184)
Q Consensus       135 ~~~~~~i~~l~~g  147 (184)
                      ..+||++++|++|
T Consensus       222 ~~~~dri~vl~~~  234 (538)
T 1yqt_A          222 DYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHCSEEEEEEEE
T ss_pred             HHhCCEEEEEcCc
Confidence            9999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.95  E-value=3.5e-28  Score=214.02  Aligned_cols=143  Identities=22%  Similarity=0.235  Sum_probs=113.8

Q ss_pred             cccCcccCCceeE---------Eec-------------CCeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHHHH
Q psy11928          2 YAHCDLQPQQGEL---------KKN-------------HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ   57 (184)
Q Consensus         2 ~~~G~~~p~~G~i---------~~~-------------~~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~   57 (184)
                      +|+|+++|++|++         .+.             .+..+++++|...  +.+. ..++.+++...  ...+++.++
T Consensus       136 iL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~-~~tv~e~l~~~--~~~~~~~~~  212 (607)
T 3bk7_A          136 ILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV-KGKVRELLKKV--DEVGKFEEV  212 (607)
T ss_dssp             HHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC-CSBHHHHHHHT--CCSSCHHHH
T ss_pred             HHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc-cccHHHHhhhh--HHHHHHHHH
Confidence            6899999999995         111             1235788888642  1111 12566655431  112457789


Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLI  134 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~  134 (184)
                      ++.+|++...+ +++++|||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++   +.|||+||||++++
T Consensus       213 L~~lgL~~~~~-~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~  291 (607)
T 3bk7_A          213 VKELELENVLD-RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL  291 (607)
T ss_dssp             HHHTTCTTGGG-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             HHHcCCCchhC-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHH
Confidence            99999987665 689999999999999999999999999999999999999999999988765   78999999999999


Q ss_pred             HhhcCeEEEEeCCe
Q psy11928        135 RDTECTLWVIENQT  148 (184)
Q Consensus       135 ~~~~~~i~~l~~g~  148 (184)
                      ..+||++++|+++.
T Consensus       292 ~~~adri~vl~~~~  305 (607)
T 3bk7_A          292 DYLSDVIHVVYGEP  305 (607)
T ss_dssp             HHHCSEEEEEESCT
T ss_pred             HhhCCEEEEECCCc
Confidence            99999999998653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.95  E-value=9.6e-28  Score=226.03  Aligned_cols=152  Identities=25%  Similarity=0.328  Sum_probs=119.4

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCc----
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAG----   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~----   65 (184)
                      .|+|+++|++|+|.+++           +..|||+||++.  +.. .|+.+++.... ....+++.+.++..++.+    
T Consensus       435 ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~  511 (1284)
T 3g5u_A          435 LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV--LFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK  511 (1284)
T ss_dssp             HTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCC--CCS-SCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCc--cCC-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence            58899999999999875           346999999984  433 47888775432 234455555444443322    


Q ss_pred             -------ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         66 -------HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        66 -------~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                             ... .+..+||||||||++||||++.+|+|||||||||+||+.+...+.+.+.+.  ++|+|+|||+++.+..
T Consensus       512 l~~g~~t~~~-~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~  590 (1284)
T 3g5u_A          512 LPHQFDTLVG-ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN  590 (1284)
T ss_dssp             STTGGGCCCS-SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT
T ss_pred             cccccccccc-CCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence                   122 256799999999999999999999999999999999999999999888653  7899999999999976


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                       ||+|++|++|++++ .|+.+++
T Consensus       591 -~d~i~vl~~G~i~~-~g~~~~l  611 (1284)
T 3g5u_A          591 -ADVIAGFDGGVIVE-QGNHDEL  611 (1284)
T ss_dssp             -CSEEEECSSSCCCC-EECHHHH
T ss_pred             -CCEEEEEECCEEEE-ECCHHHH
Confidence             99999999999975 5665554

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.95  E-value=6.6e-28  Score=227.13  Aligned_cols=155  Identities=25%  Similarity=0.326  Sum_probs=120.0

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc---CCCHHHHHHHHhhCCCCccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---NLPYEKARKQLGTFGLAGHA   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~   67 (184)
                      .|+|+++|++|+|.+++           +.++||+||++.  +. ..|+.+++....   ..+.+++.+.++..++.+..
T Consensus      1078 ~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i 1154 (1284)
T 3g5u_A         1078 LLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI--LF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFI 1154 (1284)
T ss_dssp             HHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCC--CC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHH
T ss_pred             HHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCc--cc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHH
Confidence            47899999999999764           457999999984  32 457777764321   22344555554444443211


Q ss_pred             c----------cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHH
Q psy11928         68 H----------TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIR  135 (184)
Q Consensus        68 ~----------~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~  135 (184)
                      .          .....+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++.  +.|+|+||||++.+.
T Consensus      1155 ~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~ 1234 (1284)
T 3g5u_A         1155 DSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ 1234 (1284)
T ss_dssp             SSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG
T ss_pred             HhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence            1          1135689999999999999999999999999999999999999999999765  579999999999996


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      . ||+|++|++|++++ .|+.+++.+
T Consensus      1235 ~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A         1235 N-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp             S-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred             c-CCEEEEEECCEEEE-ECCHHHHHh
Confidence            5 99999999999987 566655443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.95  E-value=6.5e-28  Score=227.65  Aligned_cols=155  Identities=23%  Similarity=0.280  Sum_probs=124.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh---cCCCHHHHHHHHhhCCCCccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL---FNLPYEKARKQLGTFGLAGHA   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~   67 (184)
                      .|.|+++|++|+|.+++           |.+||+|||+|.  +. ..|+.+++...   ...+.+++.+.++..++.+..
T Consensus      1124 lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~--LF-~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I 1200 (1321)
T 4f4c_A         1124 LLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT--LF-DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFI 1200 (1321)
T ss_dssp             HHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCC--CC-SEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCE--ee-CccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHH
Confidence            47899999999999875           467999999984  32 34677776421   234567777777777664322


Q ss_pred             cc----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHH
Q psy11928         68 HT----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIR  135 (184)
Q Consensus        68 ~~----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~  135 (184)
                      ..          ..-.+||||||||++|||||+.+|+|||||||||+||+++.+.+.+.|++.  ++|+|+|+|.++-+.
T Consensus      1201 ~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A         1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp             HTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT
T ss_pred             HcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH
Confidence            11          134679999999999999999999999999999999999999999999875  679999999999987


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      . ||+|++|++|+|++ .|+++++.+
T Consensus      1281 ~-aD~I~Vld~G~IvE-~Gth~eLl~ 1304 (1321)
T 4f4c_A         1281 N-ADCIAVVSNGTIIE-KGTHTQLMS 1304 (1321)
T ss_dssp             T-CSEEEEESSSSEEE-EECHHHHHH
T ss_pred             h-CCEEEEEECCEEEE-ECCHHHHHh
Confidence            5 89999999999988 567666554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.95  E-value=8.6e-27  Score=212.84  Aligned_cols=139  Identities=24%  Similarity=0.379  Sum_probs=115.1

Q ss_pred             EEEEEecCCCCCCCccCCHHHHHHH-hcCCCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEee
Q psy11928         21 RIGRFDQHSGEHLTAEETPAEYLQR-LFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILD   99 (184)
Q Consensus        21 ~ig~v~q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlD   99 (184)
                      +++|++|++. .+....++.+++.. ..+. .+++.++++.+|+.....++++++|||||||||+|||||+.+|++||||
T Consensus       496 ~~~~v~q~~~-~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD  573 (986)
T 2iw3_A          496 RTVYVEHDID-GTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD  573 (986)
T ss_dssp             CEEETTCCCC-CCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             eEEEEccccc-ccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            4788888642 23445677776653 1122 5678889999999633334689999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        100 EPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       100 EPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      |||||||+.++.++.++|++.+.|||+||||++++..+||++++|++|+++.+.|+++++.+
T Consensus       574 EPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          574 EPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             STTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            99999999999999999988778999999999999999999999999998756788776643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.94  E-value=4.7e-27  Score=221.85  Aligned_cols=152  Identities=24%  Similarity=0.267  Sum_probs=122.3

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCccccc
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGHAHT   69 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~   69 (184)
                      .|.|+++|++|+|.+++           +.+||||+|+|.  + ...|+.+++.... ..+.+++.+.++..++.++...
T Consensus       463 ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~--L-f~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~  539 (1321)
T 4f4c_A          463 LLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA--L-FNCTIEENISLGKEGITREEMVAACKMANAEKFIKT  539 (1321)
T ss_dssp             HHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--C-CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHH
T ss_pred             HhccccccccCcccCCCccchhccHHHHhhcccccCCcce--e-eCCchhHHHhhhcccchHHHHHHHHHHccchhHHHc
Confidence            47899999999999875           357999999984  3 3457788876432 3456777777766665432211


Q ss_pred             ----------ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhh
Q psy11928         70 ----------IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDT  137 (184)
Q Consensus        70 ----------~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~  137 (184)
                                .+-.+||||||||++||||++.+|+|+|||||||+||+.+...+.+.|.+.  ++|+|+|||++..+. .
T Consensus       540 lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~  618 (1321)
T 4f4c_A          540 LPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-N  618 (1321)
T ss_dssp             STTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-T
T ss_pred             CCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-h
Confidence                      145789999999999999999999999999999999999999999999765  789999999999986 5


Q ss_pred             cCeEEEEeCCeEEEecCChhH
Q psy11928        138 ECTLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       138 ~~~i~~l~~g~i~~~~~~~~~  158 (184)
                      ||+|++|++|+|++ .|+.++
T Consensus       619 aD~Iivl~~G~ive-~Gth~e  638 (1321)
T 4f4c_A          619 ADLIISCKNGQVVE-VGDHRA  638 (1321)
T ss_dssp             CSEEEEEETTEEEE-EECHHH
T ss_pred             CCEEEEeeCCeeec-cCCHHH
Confidence            99999999999987 555544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.94  E-value=5.3e-27  Score=204.11  Aligned_cols=143  Identities=23%  Similarity=0.255  Sum_probs=109.7

Q ss_pred             cccCcccCCceeEE-----------ecC-------------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCCHHHHH
Q psy11928          2 YAHCDLQPQQGELK-----------KNH-------------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR   55 (184)
Q Consensus         2 ~~~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~~~~~~   55 (184)
                      +|+|+++|++|+|.           +.+             ...+...+|...  +.+. ..++.+.+....  ..+++.
T Consensus        44 iL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~~~--~~~~~~  120 (538)
T 3ozx_A           44 ILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL-KGTVNEILTKID--ERGKKD  120 (538)
T ss_dssp             HHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC-CSBHHHHHHHHC--CSSCHH
T ss_pred             HHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc-cCcHHHHhhcch--hHHHHH
Confidence            68999999999982           211             123444444432  1111 124444333221  123467


Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL  133 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~  133 (184)
                      ++++.+|+....+ +++.+|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++  +.|||+||||+++
T Consensus       121 ~~l~~l~l~~~~~-~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~  199 (538)
T 3ozx_A          121 EVKELLNMTNLWN-KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIV  199 (538)
T ss_dssp             HHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHH
T ss_pred             HHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHH
Confidence            8899999987665 589999999999999999999999999999999999999999999998766  7899999999999


Q ss_pred             HHhhcCeEEEEeCCe
Q psy11928        134 IRDTECTLWVIENQT  148 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~  148 (184)
                      +..+||+++++++|.
T Consensus       200 ~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          200 LDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHCSEEEEEEEET
T ss_pred             HHhhCCEEEEecCCc
Confidence            999999999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-26  Score=204.61  Aligned_cols=99  Identities=23%  Similarity=0.305  Sum_probs=90.4

Q ss_pred             CHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928         50 PYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVII  126 (184)
Q Consensus        50 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii  126 (184)
                      ..+++.++++.+|+....+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.++++   +.|||+
T Consensus       198 ~~~~~~~~l~~~gl~~~~~-~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~  276 (608)
T 3j16_B          198 SPEDVKRYIKILQLENVLK-RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC  276 (608)
T ss_dssp             CHHHHHHHHHHHTCTGGGG-SCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred             HHHHHHHHHHHcCCcchhC-CChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            4567889999999987665 589999999999999999999999999999999999999999999998765   679999


Q ss_pred             EecCHHHHHhhcCeEEEEeCCeE
Q psy11928        127 VSHDERLIRDTECTLWVIENQTI  149 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l~~g~i  149 (184)
                      ||||++++..+||++++|.+|..
T Consensus       277 vtHdl~~~~~~~drv~vl~~~~~  299 (608)
T 3j16_B          277 VEHDLSVLDYLSDFVCIIYGVPS  299 (608)
T ss_dssp             ECSCHHHHHHHCSEEEEEESCTT
T ss_pred             EeCCHHHHHHhCCEEEEEeCCcc
Confidence            99999999999999999987653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.93  E-value=2e-26  Score=205.23  Aligned_cols=102  Identities=25%  Similarity=0.299  Sum_probs=87.9

Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecC
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd  130 (184)
                      .+++.+|+.+...++++++|||||||||+|||||+.+|+  +|||||||+|||+.++.+++++|+++   +.|||+||||
T Consensus       184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd  263 (670)
T 3ux8_A          184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD  263 (670)
T ss_dssp             HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            358889997653346899999999999999999999998  99999999999999999999988654   6899999999


Q ss_pred             HHHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928        131 ERLIRDTECTLWVI------ENQTIEEIDGDFDDY  159 (184)
Q Consensus       131 ~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~  159 (184)
                      ++++. .||++++|      ++|+++. .++++++
T Consensus       264 ~~~~~-~~d~ii~l~~g~~~~~G~i~~-~g~~~~~  296 (670)
T 3ux8_A          264 EDTML-AADYLIDIGPGAGIHGGEVVA-AGTPEEV  296 (670)
T ss_dssp             HHHHH-HCSEEEEECSSSGGGCCSEEE-EECHHHH
T ss_pred             HHHHh-hCCEEEEecccccccCCEEEE-ecCHHHH
Confidence            99876 59999999      7888865 5555544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.91  E-value=4.5e-24  Score=190.02  Aligned_cols=105  Identities=26%  Similarity=0.371  Sum_probs=88.6

Q ss_pred             HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCC---EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928         52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPD---VIILDEPTNNLDIESIDALADAINEY---KGGVI  125 (184)
Q Consensus        52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~---illlDEPt~~LD~~~~~~l~~~l~~~---~~tii  125 (184)
                      .+..+.+..+++.....++++.+|||||||||+|||||+.+|+   +|||||||+|||+.++..++++|+++   +.|||
T Consensus       521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi  600 (670)
T 3ux8_A          521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL  600 (670)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            3456678889986543346899999999999999999998874   99999999999999999999988654   78999


Q ss_pred             EEecCHHHHHhhcCeEEEE------eCCeEEEecCChhH
Q psy11928        126 IVSHDERLIRDTECTLWVI------ENQTIEEIDGDFDD  158 (184)
Q Consensus       126 ivsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~  158 (184)
                      +||||++++. .||++++|      ++|+++. .|++++
T Consensus       601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~-~g~~~~  637 (670)
T 3ux8_A          601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEE  637 (670)
T ss_dssp             EECCCHHHHT-TCSEEEEEESSSGGGCCEEEE-EECHHH
T ss_pred             EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE-ecCHHH
Confidence            9999999885 69999999      8899975 455443

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.90  E-value=1.6e-23  Score=153.91  Aligned_cols=79  Identities=35%  Similarity=0.471  Sum_probs=70.1

Q ss_pred             cccccCCChhHHHHHHHH------HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928         69 TIKMKDLSGGQKARVALA------ELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~la------ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~  139 (184)
                      ++++++||||||||++||      ||++.+|+++||||||+|||+.++..+.+.+.+.   +.|||+||||.+ +...|+
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d  130 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD  130 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence            357899999999999886      8999999999999999999999999999999764   579999999994 567999


Q ss_pred             eEEEE--eCCe
Q psy11928        140 TLWVI--ENQT  148 (184)
Q Consensus       140 ~i~~l--~~g~  148 (184)
                      +++++  ++|.
T Consensus       131 ~ii~l~~~~g~  141 (148)
T 1f2t_B          131 HVIRISLENGS  141 (148)
T ss_dssp             EEEEEEEETTE
T ss_pred             EEEEEEcCCCe
Confidence            99999  4553

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.90  E-value=3.4e-23  Score=188.70  Aligned_cols=106  Identities=25%  Similarity=0.366  Sum_probs=91.0

Q ss_pred             HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEE
Q psy11928         52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVI  125 (184)
Q Consensus        52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tii  125 (184)
                      .++.+.|+.+|+......+++.+|||||||||+|||+|+.+|   ++|||||||+|||+.++..+++.|+++   |.|||
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI  862 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI  862 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            456778999999754434689999999999999999999875   799999999999999999999988754   78999


Q ss_pred             EEecCHHHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928        126 IVSHDERLIRDTECTLWVI------ENQTIEEIDGDFDDY  159 (184)
Q Consensus       126 ivsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~  159 (184)
                      +||||++++.. ||+|++|      ++|+++. .|+++++
T Consensus       863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~-~Gtpeel  900 (916)
T 3pih_A          863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVA-TGTPEEI  900 (916)
T ss_dssp             EECCCHHHHTT-CSEEEEEESSSGGGCCEEEE-EESHHHH
T ss_pred             EEeCCHHHHHh-CCEEEEecCCCCCCCCEEEE-EcCHHHH
Confidence            99999999865 9999999      8899975 5666554

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.89  E-value=6.1e-23  Score=170.98  Aligned_cols=80  Identities=20%  Similarity=0.338  Sum_probs=74.0

Q ss_pred             ccccCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         70 IKMKDLSGGQKARVALAELTL------NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~------~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      +++.+|||||||||+||+||+      .+|+++||||||+|||+.++..+.+.|.++   +.|||+||||+++ ...||+
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~  353 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR  353 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence            578999999999999999999      799999999999999999999999998764   6899999999998 467999


Q ss_pred             EEEEeCCeEE
Q psy11928        141 LWVIENQTIE  150 (184)
Q Consensus       141 i~~l~~g~i~  150 (184)
                      +++|++|+++
T Consensus       354 ~~~l~~G~i~  363 (365)
T 3qf7_A          354 KLRITGGVVV  363 (365)
T ss_dssp             EEEEETTEEC
T ss_pred             EEEEECCEEE
Confidence            9999999885

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.89  E-value=1.1e-22  Score=185.32  Aligned_cols=105  Identities=27%  Similarity=0.360  Sum_probs=90.4

Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEe
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEY---KGGVIIVS  128 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivs  128 (184)
                      ..+.+..+|+.....++++.+|||||||||+|||||+.+|+  +|||||||+|||+..+.++.+.|+++   |.|||+||
T Consensus       444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt  523 (916)
T 3pih_A          444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE  523 (916)
T ss_dssp             HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred             HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            34578889997543346899999999999999999999887  99999999999999999999999765   67999999


Q ss_pred             cCHHHHHhhcCeEEEE------eCCeEEEecCChhHHH
Q psy11928        129 HDERLIRDTECTLWVI------ENQTIEEIDGDFDDYR  160 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~~  160 (184)
                      ||++++.. ||+|++|      ++|+++. .|+++++.
T Consensus       524 Hd~~~~~~-aD~ii~lgpgag~~~G~iv~-~G~~~e~~  559 (916)
T 3pih_A          524 HDEEVIRN-ADHIIDIGPGGGTNGGRVVF-QGTVDELL  559 (916)
T ss_dssp             CCHHHHHT-CSEEEEEESSSGGGCSEEEE-EECHHHHH
T ss_pred             CCHHHHHh-CCEEEEEcCCcccCCCEEEE-eechhhhh
Confidence            99999875 9999999      7888864 67776654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.88  E-value=1.1e-22  Score=184.02  Aligned_cols=106  Identities=24%  Similarity=0.297  Sum_probs=90.5

Q ss_pred             HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcC---CCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEE
Q psy11928         52 EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNA---PDVIILDEPTNNLDIESIDALADAINE---YKGGVI  125 (184)
Q Consensus        52 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tii  125 (184)
                      .++.++++.+|+......+++.+|||||||||.||++|+.+   |++|||||||+|||+.++..+.+.|++   .+.|||
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI  787 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI  787 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            34677899999976433468999999999999999999996   799999999999999999999988865   378999


Q ss_pred             EEecCHHHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928        126 IVSHDERLIRDTECTLWVI------ENQTIEEIDGDFDDY  159 (184)
Q Consensus       126 ivsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~~  159 (184)
                      +||||++++ ..||++++|      ++|+++. .++++++
T Consensus       788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~-~g~~~el  825 (842)
T 2vf7_A          788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVA-QGTPAEV  825 (842)
T ss_dssp             EECCCHHHH-TTCSEEEEECSSSGGGCCSEEE-EECHHHH
T ss_pred             EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEE-EcCHHHH
Confidence            999999999 689999999      6888864 4555443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.87  E-value=4.2e-22  Score=181.21  Aligned_cols=104  Identities=26%  Similarity=0.364  Sum_probs=88.2

Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP---DVIILDEPTNNLDIESIDALADAINEY---KGGVII  126 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii  126 (184)
                      +..++++.+|+......+++.+|||||||||+||++|+.+|   ++|||||||+|||+.++..+++.|.++   +.|||+
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv  903 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV  903 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            45678999999762334589999999999999999999865   999999999999999999999988653   789999


Q ss_pred             EecCHHHHHhhcCeEEEE------eCCeEEEecCChhH
Q psy11928        127 VSHDERLIRDTECTLWVI------ENQTIEEIDGDFDD  158 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l------~~g~i~~~~~~~~~  158 (184)
                      ||||++++. .||++++|      ++|+++. .+++++
T Consensus       904 isHdl~~i~-~aDrIivL~p~gG~~~G~Iv~-~g~~~e  939 (972)
T 2r6f_A          904 IEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEE  939 (972)
T ss_dssp             ECCCHHHHT-TCSEEEEECSSSTTSCCSEEE-EESHHH
T ss_pred             EcCCHHHHH-hCCEEEEEcCCCCCCCCEEEE-ecCHHH
Confidence            999999985 79999999      6888865 444433

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.86  E-value=8.2e-25  Score=187.08  Aligned_cols=150  Identities=17%  Similarity=0.096  Sum_probs=116.2

Q ss_pred             cccCcccCCce-e-EEecC--CeEEEEEecCCC-----CCCCccCCHHHHHHHh-cC-CCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQG-E-LKKNH--RLRIGRFDQHSG-----EHLTAEETPAEYLQRL-FN-LPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G-~-i~~~~--~~~ig~v~q~~~-----~~l~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+.+|++| + |.+++  ++.++++||++.     ..+++.+++  +.... .+ ...+++.++++.+|++...+  
T Consensus       157 ~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni--~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--  232 (460)
T 2npi_A          157 TLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT--WGQSLTSGATLLHNKQPMVKNFGLERINE--  232 (460)
T ss_dssp             HHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT--CSCBCBSSCCSSCCBCCEECCCCSSSGGG--
T ss_pred             HHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh--cccccccCcchHHHHHHHHHHhCCCcccc--
Confidence            58899999999 8 88764  567999999862     123344342  11110 11 11123456788899976442  


Q ss_pred             cccCCChhHHHHHHHHHH--HhcCCCE----EEeeC-CCCCCCHHHHHHHHHHHHhcCcEEEEEecCHH------HHHhh
Q psy11928         71 KMKDLSGGQKARVALAEL--TLNAPDV----IILDE-PTNNLDIESIDALADAINEYKGGVIIVSHDER------LIRDT  137 (184)
Q Consensus        71 ~~~~LSgG~kqrv~lara--l~~~p~i----lllDE-Pt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~------~~~~~  137 (184)
                       +.+|||||||||+||||  |+.+|++    +|||| ||++||+. ...+.+++++++.|+|+||||.+      ++..+
T Consensus       233 -~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~  310 (460)
T 2npi_A          233 -NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTF  310 (460)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHH
T ss_pred             -hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHh
Confidence             78999999999999999  9999999    99999 99999999 88888888888999999999987      78889


Q ss_pred             cCe-----EEEEe-CCeEEEecCChhHH
Q psy11928        138 ECT-----LWVIE-NQTIEEIDGDFDDY  159 (184)
Q Consensus       138 ~~~-----i~~l~-~g~i~~~~~~~~~~  159 (184)
                      ||+     +++|+ +|+++  .++.+..
T Consensus       311 ~dr~~~~~vi~l~k~G~iv--~g~~~~~  336 (460)
T 2npi_A          311 GPELGNNNIFFIPKLDGVS--AVDDVYK  336 (460)
T ss_dssp             HHHHCGGGEEEECCCTTCC--CCCHHHH
T ss_pred             cccccCCEEEEEeCCCcEE--ECCHHHH
Confidence            999     99999 99986  5555544

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.86  E-value=1.3e-21  Score=177.94  Aligned_cols=101  Identities=25%  Similarity=0.297  Sum_probs=86.0

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~  131 (184)
                      .|..+||.....++++.+|||||+|||.||++|..+|  ++|||||||+|||+...+++.+.|++   .|.|||+||||+
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl  566 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  566 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            4788899754234689999999999999999999985  99999999999999999999988765   478999999999


Q ss_pred             HHHHhhcCeEEEE------eCCeEEEecCChhHH
Q psy11928        132 RLIRDTECTLWVI------ENQTIEEIDGDFDDY  159 (184)
Q Consensus       132 ~~~~~~~~~i~~l------~~g~i~~~~~~~~~~  159 (184)
                      +++. .||+|++|      ++|+++. .++++++
T Consensus       567 ~~i~-~ADrIi~LgpgaG~~gG~iv~-~G~~~e~  598 (972)
T 2r6f_A          567 DTML-AADYLIDIGPGAGIHGGEVVA-AGTPEEV  598 (972)
T ss_dssp             HHHH-SCSEEEEECSSSGGGCCSEEE-EECTTTT
T ss_pred             HHHH-hCCEEEEeCCCccCCCCEEEE-ecCHHHH
Confidence            9986 69999999      6788864 5555444

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.85  E-value=3.9e-21  Score=173.94  Aligned_cols=102  Identities=25%  Similarity=0.279  Sum_probs=86.5

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDE  131 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~  131 (184)
                      .+..+|+.....++++.+|||||+|||.||++|+.+|  .++||||||++||+..++++.+.+++   .+.|||+||||+
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl  441 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL  441 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            5778999754234689999999999999999999999  49999999999999999999987754   478999999999


Q ss_pred             HHHHhhcCeEEEE------eCCeEEEecCChhHHH
Q psy11928        132 RLIRDTECTLWVI------ENQTIEEIDGDFDDYR  160 (184)
Q Consensus       132 ~~~~~~~~~i~~l------~~g~i~~~~~~~~~~~  160 (184)
                      +++. .||+|++|      ++|+++. .++++++.
T Consensus       442 ~~l~-~aD~ii~lgpgaG~~~G~iv~-~g~~~~~~  474 (842)
T 2vf7_A          442 DVIR-RADWLVDVGPEAGEKGGEILY-SGPPEGLK  474 (842)
T ss_dssp             HHHT-TCSEEEEECSSSGGGCCSEEE-EECGGGGG
T ss_pred             HHHH-hCCEEEEeCCCcccCCCEEEE-ecCHHHHH
Confidence            9875 69999999      6788764 56665543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.84  E-value=8.1e-21  Score=159.69  Aligned_cols=94  Identities=20%  Similarity=0.254  Sum_probs=77.6

Q ss_pred             CChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEE----eC
Q psy11928         75 LSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVI----EN  146 (184)
Q Consensus        75 LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l----~~  146 (184)
                      ||||||||++||++|+.+|  ++|||||||||||+.++.++.+.|+++  +.|||+||||++++. .||++++|    ++
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~  374 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED  374 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence            6999999999999999999  999999999999999999999999887  589999999998874 79999999    89


Q ss_pred             CeEEEecC--ChhHHHHHHHHHhhh
Q psy11928        147 QTIEEIDG--DFDDYRKELLEALGE  169 (184)
Q Consensus       147 g~i~~~~~--~~~~~~~~~~~~~~~  169 (184)
                      |+++....  ..+.-.+++.+.+.+
T Consensus       375 G~~~~~~~~l~~~~~~~ei~~~~~g  399 (415)
T 4aby_A          375 GRTVSHVRLLTGDERLEEIARMLSG  399 (415)
T ss_dssp             TEEEEEEEECCSHHHHHHHHHHHHS
T ss_pred             CceEEEEEECCchhhHHHHHHHhcC
Confidence            98754211  223334444444433

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.81  E-value=4.5e-19  Score=133.25  Aligned_cols=90  Identities=19%  Similarity=0.282  Sum_probs=73.4

Q ss_pred             ccccCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEE
Q psy11928         70 IKMKDLSGGQKARVALAELTLN----APDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      +++..||||||||++||++++.    +|+++||||||++||+.++..+.++|++.  +.++|+|||+.... ..||+++.
T Consensus        60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~  138 (173)
T 3kta_B           60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG  138 (173)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence            4689999999999999999974    46999999999999999999999999875  46899999998765 57999875


Q ss_pred             E--eCCeEEEecCChhHHH
Q psy11928        144 I--ENQTIEEIDGDFDDYR  160 (184)
Q Consensus       144 l--~~g~i~~~~~~~~~~~  160 (184)
                      +  .+|.......+.+.+.
T Consensus       139 v~~~~g~s~~~~~~~~~~~  157 (173)
T 3kta_B          139 VSMRDGVSKVVSLSLEKAM  157 (173)
T ss_dssp             EEEETTEEEEEECCHHHHH
T ss_pred             EEecCCEEEEEEEEcHHHH
Confidence            4  5675444445555444

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.79  E-value=3.1e-19  Score=147.08  Aligned_cols=75  Identities=35%  Similarity=0.483  Sum_probs=66.1

Q ss_pred             ccccCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCe
Q psy11928         70 IKMKDLSGGQKA------RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        70 ~~~~~LSgG~kq------rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~  140 (184)
                      +++.+|||||||      |+++|++++.+|++|||||||+|||+..+..+.+.|.++   +.|||+||||.+ +...||+
T Consensus       244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~  322 (339)
T 3qkt_A          244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADH  322 (339)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSE
T ss_pred             CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCE
Confidence            578999999999      677888888999999999999999999999999998764   569999999966 5678999


Q ss_pred             EEEEe
Q psy11928        141 LWVIE  145 (184)
Q Consensus       141 i~~l~  145 (184)
                      ++++.
T Consensus       323 ~~~l~  327 (339)
T 3qkt_A          323 VIRIS  327 (339)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98875

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.79  E-value=2e-19  Score=155.83  Aligned_cols=77  Identities=23%  Similarity=0.346  Sum_probs=70.0

Q ss_pred             ccccCC-ChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         70 IKMKDL-SGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        70 ~~~~~L-SgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      +++.+| ||||+|||+||++++.+|  ++|||||||+|||+.++..+.+.|.++  +.|||+||||++.+. .||++++|
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~  470 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV  470 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence            357788 999999999999999999  999999999999999999999988765  689999999999886 59999999


Q ss_pred             eCC
Q psy11928        145 ENQ  147 (184)
Q Consensus       145 ~~g  147 (184)
                      .++
T Consensus       471 ~~~  473 (517)
T 4ad8_A          471 EKQ  473 (517)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            654

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.79  E-value=4.4e-19  Score=145.15  Aligned_cols=80  Identities=26%  Similarity=0.324  Sum_probs=70.2

Q ss_pred             ccccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeE--
Q psy11928         70 IKMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTL--  141 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i--  141 (184)
                      .++.+||+|||||++||++|+    .+|+++||||||++||+..+..+.+.+.+.  +.+||+|||+.+ +...||++  
T Consensus       215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~  293 (322)
T 1e69_A          215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHG  293 (322)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEE
T ss_pred             CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEE
Confidence            468999999999999999997    678999999999999999999999999876  569999999965 45679986  


Q ss_pred             EEEeCCeEE
Q psy11928        142 WVIENQTIE  150 (184)
Q Consensus       142 ~~l~~g~i~  150 (184)
                      +++.+|...
T Consensus       294 v~~~~g~s~  302 (322)
T 1e69_A          294 VTMVNGVSA  302 (322)
T ss_dssp             EEESSSCEE
T ss_pred             EEEeCCEEE
Confidence            778888654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.78  E-value=2.6e-19  Score=135.15  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=76.4

Q ss_pred             cccccCCChhHHHHHHHHHH-----HhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHhcCcEEEEEe---cCHHHHHhhc
Q psy11928         69 TIKMKDLSGGQKARVALAEL-----TLNAPDVIILDE--PTNNLDIESIDALADAINEYKGGVIIVS---HDERLIRDTE  138 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~lara-----l~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~tiiivs---Hd~~~~~~~~  138 (184)
                      .+++.+||||||||++||+|     ++.+|+++||||  ||++||+..++.+.+.+.+.+.|+|++|   ||.+++..+|
T Consensus        71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~  150 (178)
T 1ye8_A           71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR  150 (178)
T ss_dssp             TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHH
T ss_pred             cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHH
Confidence            35789999999999999996     999999999999  9999999999999999988777788888   5999999999


Q ss_pred             CeEEEEeCCeEEEec-CChhHHHHHHHHH
Q psy11928        139 CTLWVIENQTIEEID-GDFDDYRKELLEA  166 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~-~~~~~~~~~~~~~  166 (184)
                      ++    .+|++.++. .+.+++.+++.+.
T Consensus       151 ~r----~~~~i~~~~~~~r~~~~~~l~~~  175 (178)
T 1ye8_A          151 RL----PGAVLIELTPENRDVILEDILSL  175 (178)
T ss_dssp             TC----TTCEEEECCTTTTTTHHHHHHHH
T ss_pred             hc----CCcEEEEecCcCHHHHHHHHHHH
Confidence            87    345554432 3344555554443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.76  E-value=1.4e-18  Score=144.26  Aligned_cols=83  Identities=18%  Similarity=0.096  Sum_probs=74.1

Q ss_pred             ccccc-CCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhc
Q psy11928         69 TIKMK-DLSGGQKARVALAELTL---------NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        69 ~~~~~-~LSgG~kqrv~laral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~  138 (184)
                      .++++ .||||||||++||++|+         .+|+||||||||++||+..+..+.+.+.+...|+|++||+ +.   .|
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~  334 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA  334 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence            44677 89999999999999999         8999999999999999999999999998877899999995 33   79


Q ss_pred             CeEEEEeCCeEEEecCCh
Q psy11928        139 CTLWVIENQTIEEIDGDF  156 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~  156 (184)
                      ++++++++|++.. .+++
T Consensus       335 ~~i~~l~~G~i~~-~g~~  351 (359)
T 2o5v_A          335 ALTLRAQAGRFTP-VADE  351 (359)
T ss_dssp             SEEEEEETTEEEE-CCCT
T ss_pred             CEEEEEECCEEEe-cCCH
Confidence            9999999999975 4544

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.74  E-value=1.2e-20  Score=145.77  Aligned_cols=112  Identities=14%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             cccCcccCCceeEEe--------cCCeEEEEEecCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccccccc
Q psy11928          2 YAHCDLQPQQGELKK--------NHRLRIGRFDQHSGEHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHTIKM   72 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~--------~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~   72 (184)
                      +|+|+ +|++|+|..        ..+..+||+||++..++....  ......... ....++.++++. |+         
T Consensus        41 ~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~--~~~~~~~~~~~~~~~~~~~l~~-gl---------  107 (208)
T 3b85_A           41 AKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYL--RPLHDALRDMVEPEVIPKLMEA-GI---------  107 (208)
T ss_dssp             HHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTT--HHHHHHHTTTSCTTHHHHHHHT-TS---------
T ss_pred             HHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHH--HHHHHHHHHhccHHHHHHHHHh-CC---------
Confidence            57899 999999843        124568999997632221110  000111111 112334444443 22         


Q ss_pred             cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                           ||||||+|||||+.+|++|||||||++    ++..+.+.|.++  +.||| ||||++++..
T Consensus       108 -----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          108 -----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             -----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred             -----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence                 999999999999999999999999999    888888888775  56898 9999998764

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.71  E-value=5.9e-17  Score=134.93  Aligned_cols=75  Identities=31%  Similarity=0.500  Sum_probs=66.8

Q ss_pred             ccccCCChhHHHHH------HHHHHHhcC-CCEEEeeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecCHHHHHhhcCe
Q psy11928         70 IKMKDLSGGQKARV------ALAELTLNA-PDVIILDEPTNNLDIESIDALADAINEYK--GGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        70 ~~~~~LSgG~kqrv------~laral~~~-p~illlDEPt~~LD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~  140 (184)
                      +++..|||||+||+      ++|++++.+ |+++||||||++||+..+..+.+.+.+..  .+||+|||+.+ +...|++
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~  354 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV  354 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence            46789999999988      557888999 99999999999999999999999998753  59999999987 5678999


Q ss_pred             EEEEe
Q psy11928        141 LWVIE  145 (184)
Q Consensus       141 i~~l~  145 (184)
                      +++++
T Consensus       355 ~~~l~  359 (371)
T 3auy_A          355 IINVK  359 (371)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99886

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.67  E-value=1.4e-17  Score=124.45  Aligned_cols=76  Identities=8%  Similarity=0.097  Sum_probs=62.7

Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH----------------HHHHHHHHHH---hc
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE----------------SIDALADAIN---EY  120 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~----------------~~~~l~~~l~---~~  120 (184)
                      ..|.....+  .....|+|||||++||||++.+|++++|||||++||+.                .+..+.+.+.   +.
T Consensus        71 ~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~  148 (171)
T 4gp7_A           71 QLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE  148 (171)
T ss_dssp             HTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH
T ss_pred             hCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc
Confidence            345544333  45667999999999999999999999999999999999                5577887754   34


Q ss_pred             CcEEEEEecCHHHHHhh
Q psy11928        121 KGGVIIVSHDERLIRDT  137 (184)
Q Consensus       121 ~~tiiivsHd~~~~~~~  137 (184)
                      |.|+|+||||++++..+
T Consensus       149 g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A          149 GFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             TCSEEEEECSHHHHHHE
T ss_pred             CCcEEEEeCCHHHhhhh
Confidence            78999999999999864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.67  E-value=2.3e-16  Score=133.60  Aligned_cols=74  Identities=28%  Similarity=0.359  Sum_probs=66.2

Q ss_pred             cccCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEE
Q psy11928         71 KMKDLSGGQKARVALAELTL----NAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      ++..||||||||++||++|+    .+|+++||||||++||+..+..+.+.+.+.   +.++|++||+.... ..||+++.
T Consensus       330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~~  408 (430)
T 1w1w_A          330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALVG  408 (430)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEEE
T ss_pred             ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEEE
Confidence            56779999999999999999    589999999999999999999999999875   35999999997765 57999988


Q ss_pred             Ee
Q psy11928        144 IE  145 (184)
Q Consensus       144 l~  145 (184)
                      +.
T Consensus       409 ~~  410 (430)
T 1w1w_A          409 VY  410 (430)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.63  E-value=9.4e-19  Score=147.60  Aligned_cols=138  Identities=9%  Similarity=-0.064  Sum_probs=100.9

Q ss_pred             cccCcccCCceeEEecCCe--EEEEEecCCC-CCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCCCcccccccccCCChh
Q psy11928          2 YAHCDLQPQQGELKKNHRL--RIGRFDQHSG-EHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG   78 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~--~ig~v~q~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG   78 (184)
                      .|+|+.+|++|+|..++..  +.++++|++. +.++..+++.    ...  ...++.++++.+++.+.. . .+. ||+|
T Consensus        88 ~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g----~~~--~~~~~~~~L~~~~L~~~~-~-~~~-lS~G  158 (413)
T 1tq4_A           88 TLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG----IGS--TNFPPDTYLEKMKFYEYD-F-FII-ISAT  158 (413)
T ss_dssp             HHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCC----GGG--SSCCHHHHHHHTTGGGCS-E-EEE-EESS
T ss_pred             HHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhc----ccc--hHHHHHHHHHHcCCCccC-C-eEE-eCCC
Confidence            5789999999999876421  1278888753 2344444421    111  123467888899987543 2 334 9999


Q ss_pred             --HHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc--------C----cEEEEEecCHHH-
Q psy11928         79 --QKARVALAELTLN----------APDVIILDEPTNNLDIESIDALADAINEY--------K----GGVIIVSHDERL-  133 (184)
Q Consensus        79 --~kqrv~laral~~----------~p~illlDEPt~~LD~~~~~~l~~~l~~~--------~----~tiiivsHd~~~-  133 (184)
                        |+||+.||++++.          +|++++|||||+|||+.++..+++.+++.        +    .+|+++||++.. 
T Consensus       159 ~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~  238 (413)
T 1tq4_A          159 RFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHY  238 (413)
T ss_dssp             CCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTST
T ss_pred             CccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCcc
Confidence              9999999999999          99999999999999999998888777543        1    468899999887 


Q ss_pred             -HHhhcCeEE-EEeCCe
Q psy11928        134 -IRDTECTLW-VIENQT  148 (184)
Q Consensus       134 -~~~~~~~i~-~l~~g~  148 (184)
                       ++.+|+++. .+..|.
T Consensus       239 ~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          239 DFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             THHHHHHHHHHHSCGGG
T ss_pred             CHHHHHHHHHHhCccch
Confidence             888888874 444553

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.49  E-value=9.2e-15  Score=126.74  Aligned_cols=86  Identities=9%  Similarity=0.015  Sum_probs=73.2

Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH-----HHHHHHHHHH---hcCcEEEEEecCH-
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE-----SIDALADAIN---EYKGGVIIVSHDE-  131 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~-----~~~~l~~~l~---~~~~tiiivsHd~-  131 (184)
                      +|+..... .++.+|||||+||+.+|+++..+|+++++| ||++||..     .+..+.++++   +.+.|+|++||+. 
T Consensus       341 ~g~~~~~~-~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~  418 (525)
T 1tf7_A          341 QNLLKIVC-AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQ  418 (525)
T ss_dssp             TTSEEECC-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSS
T ss_pred             CCCEEEEE-eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECccc
Confidence            44443333 478999999999999999999999999999 99999998     8887766664   4578999999999 


Q ss_pred             ---------HHHHhhcCeEEEEeCCe
Q psy11928        132 ---------RLIRDTECTLWVIENQT  148 (184)
Q Consensus       132 ---------~~~~~~~~~i~~l~~g~  148 (184)
                               ..+..+||++++|++|+
T Consensus       419 ~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          419 FMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             SSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             ccCcccccCcccceeeeEEEEEEEEE
Confidence                     78888999999998764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.44  E-value=2.9e-15  Score=121.63  Aligned_cols=136  Identities=12%  Similarity=0.061  Sum_probs=97.3

Q ss_pred             cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~   62 (184)
                      .|+|+++|++|+|.+.+                 +..++|++|++. .+.+..++.+.+...  .+..    ..+++.+|
T Consensus       119 ~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~~~v~e~l~~~~~~~~d----~~lldt~g  193 (302)
T 3b9q_A          119 KLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAATVLSKAVKRGKEEGYD----VVLCDTSG  193 (302)
T ss_dssp             HHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHHHHHHHHHHHHHHTTCS----EEEECCCC
T ss_pred             HHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHHHHHHHHHHHHHHcCCc----chHHhcCC
Confidence            47888899999997642                 124899999763 133444444444321  1111    13567788


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------CH
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEYKGGVIIVSH---------DE  131 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH---------d~  131 (184)
                      +.+... +++.+||   |||++|||+++.+|+  +|+|| ||+|||+....  .++-.+.+.|+|++||         .+
T Consensus       194 l~~~~~-~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l  266 (302)
T 3b9q_A          194 RLHTNY-SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVV  266 (302)
T ss_dssp             CSSCCH-HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHH
T ss_pred             CCcchh-HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChhe
Confidence            876544 4789999   999999999999999  99999 99999998652  3333356889999999         56


Q ss_pred             HHHHhhcCeEEEEeCCeE
Q psy11928        132 RLIRDTECTLWVIENQTI  149 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i  149 (184)
                      +.+...+..|.++..|+.
T Consensus       267 ~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          267 SVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             HHHHHHCCCEEEEECSSS
T ss_pred             ehHHHHCCCEEEEeCCCC
Confidence            677777888999998864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.41  E-value=1.8e-15  Score=121.04  Aligned_cols=120  Identities=13%  Similarity=0.149  Sum_probs=72.1

Q ss_pred             cccCcccCCceeEEecC--------CeEEEEEecCCC--CCCCccCCHHHHHHHhcC-CCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH--------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFN-LPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      .|+|+..|++|+|.+++        +..+|+++|++.  +.+++.+|+. +.....+ ...+.+.+++.    .... ++
T Consensus        21 ~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~-~g~~~~~~~~~~~i~~~~~----~~~~-~~   94 (270)
T 3sop_A           21 TLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPG-FGDQINNENCWEPIEKYIN----EQYE-KF   94 (270)
T ss_dssp             HHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSBCTTCSHHHHHHHH----HHHH-HH
T ss_pred             HHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechh-hhhhcccHHHHHHHHHHHH----HHHH-hh
Confidence            57899999999997643        357999999864  3445555542 1111111 11123444433    2233 34


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHH
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDER  132 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~  132 (184)
                      .+.+||||||||+++|||++.   ++++|||+++||+.... +++.+.+. .+||+|.|..+
T Consensus        95 ~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~~~-~~vI~Vi~K~D  151 (270)
T 3sop_A           95 LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLSKV-VNIIPVIAKAD  151 (270)
T ss_dssp             HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHHTT-SEEEEEETTGG
T ss_pred             hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHHhc-CcEEEEEeccc
Confidence            788999999999999999886   99999999999999854 44555554 88888888654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.37  E-value=2.9e-14  Score=118.28  Aligned_cols=136  Identities=12%  Similarity=0.061  Sum_probs=97.4

Q ss_pred             cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~   62 (184)
                      .|+|+++|++|+|.+.+                 +..++|++|++. .+.+..++.+.+...  .+..    ..+++.+|
T Consensus       176 ~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~~tv~e~l~~~~~~~~d----~~lldt~G  250 (359)
T 2og2_A          176 KLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAATVLSKAVKRGKEEGYD----VVLCDTSG  250 (359)
T ss_dssp             HHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHHHHHHHHHHHHHHTTCS----EEEEECCC
T ss_pred             HHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChhhhHHHHHHHHHhCCCH----HHHHHhcC
Confidence            46888899999997642                 124899999752 033344444443321  1111    13567788


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------CH
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEYKGGVIIVSH---------DE  131 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH---------d~  131 (184)
                      +.+... +++.+||   +||++|||+++.+|+  +|+|| ||+|||+.+..  .++-.+.+.|+|++||         .+
T Consensus       251 l~~~~~-~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~l  323 (359)
T 2og2_A          251 RLHTNY-SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVV  323 (359)
T ss_dssp             CSSCCH-HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHH
T ss_pred             CChhhh-hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHH
Confidence            876544 4789999   999999999999999  99999 99999998653  2333356889999999         46


Q ss_pred             HHHHhhcCeEEEEeCCeE
Q psy11928        132 RLIRDTECTLWVIENQTI  149 (184)
Q Consensus       132 ~~~~~~~~~i~~l~~g~i  149 (184)
                      +.+...+..|..+..|..
T Consensus       324 si~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          324 SVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             HHHHHHCCCEEEEECSSS
T ss_pred             HHHHHhCCCEEEEeCCCC
Confidence            677777888999988854

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.29  E-value=1.1e-12  Score=107.67  Aligned_cols=67  Identities=19%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         77 GGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        77 gG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      |||+||++|++||..+|+++++||||+.   +..+ +++.+..-+.|+|++||+.+ +...|+|++++.+|.
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN  291 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence            8999999999999999999999999982   2222 22333332347999999998 667899999888875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.25  E-value=4e-14  Score=115.44  Aligned_cols=118  Identities=10%  Similarity=-0.011  Sum_probs=78.8

Q ss_pred             eEEEEEecCCCCCCCccCCHHHHHHHh--cC----CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCC
Q psy11928         20 LRIGRFDQHSGEHLTAEETPAEYLQRL--FN----LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAP   93 (184)
Q Consensus        20 ~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p   93 (184)
                      ..+++++|++.  +.+. ++.+.....  ++    ...+.+.+.++.++ ..... .++.+|||||+||+++|++++.+|
T Consensus       121 ~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~-~~~~~lS~G~~qRv~~a~al~~~p  195 (312)
T 3aez_A          121 PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDY-ACAPVYSHLHYDIIPGAEQVVRHP  195 (312)
T ss_dssp             CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSC-EEEEEEETTTTEEEEEEEEEECSC
T ss_pred             CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCccc-CCcccCChhhhhhhhhHHHhccCC
Confidence            46899999864  2333 444443211  11    12356777888877 44333 468899999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHH-hhcCeEEEEeCC
Q psy11928         94 DVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIR-DTECTLWVIENQ  147 (184)
Q Consensus        94 ~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~-~~~~~i~~l~~g  147 (184)
                      +|+|+|||+..+|+..     ..+.+.-...|+|+|+.+... ....|.+.+.++
T Consensus       196 ~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~  245 (312)
T 3aez_A          196 DILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT  245 (312)
T ss_dssp             SEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred             CEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence            9999999999998521     123333346688889887643 344554444444

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.21  E-value=1.9e-11  Score=112.10  Aligned_cols=90  Identities=16%  Similarity=0.110  Sum_probs=63.7

Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHH--hcCCCEEEeeCCCCCCCHHHHHHH-H---HHHHh-cCcEEEEEe
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELT--LNAPDVIILDEPTNNLDIESIDAL-A---DAINE-YKGGVIIVS  128 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral--~~~p~illlDEPt~~LD~~~~~~l-~---~~l~~-~~~tiiivs  128 (184)
                      +++..+|+.+.    ....+|+|++++..+++++  +.+|+++||||||+|+|+.....+ +   +.+.+ .+.++|++|
T Consensus       707 ~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aT  782 (934)
T 3thx_A          707 CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFAT  782 (934)
T ss_dssp             EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence            34555666432    3466888888888888888  999999999999999999877665 3   33443 478999999


Q ss_pred             cCHHHHHhhcCeEEEEeCCeEE
Q psy11928        129 HDERLIRDTECTLWVIENQTIE  150 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~g~i~  150 (184)
                      |+.+.. .+|+++..+++|++.
T Consensus       783 H~~el~-~lad~~~~v~ng~v~  803 (934)
T 3thx_A          783 HFHELT-ALANQIPTVNNLHVT  803 (934)
T ss_dssp             SCGGGG-GGGGTCTTEEEEEEE
T ss_pred             CcHHHH-HHhcccceeEeeEEE
Confidence            997766 578888777777763

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.19  E-value=1.5e-11  Score=112.53  Aligned_cols=78  Identities=14%  Similarity=0.141  Sum_probs=57.0

Q ss_pred             HHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHH----hcCcEEEEEecC
Q psy11928         56 KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA-DAIN----EYKGGVIIVSHD  130 (184)
Q Consensus        56 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~----~~~~tiiivsHd  130 (184)
                      +++..+|+.+... +..+.+|+||+|++.++++ +.+|+++||||||+|||+.....+. .++.    +.+.|+|++||+
T Consensus       718 ~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~  795 (918)
T 3thx_B          718 GIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY  795 (918)
T ss_dssp             EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             HHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            3566677765554 3689999999999999999 8999999999999999998877665 4443    247899999999


Q ss_pred             HHHHH
Q psy11928        131 ERLIR  135 (184)
Q Consensus       131 ~~~~~  135 (184)
                      .+.+.
T Consensus       796 ~el~~  800 (918)
T 3thx_B          796 PPVCE  800 (918)
T ss_dssp             GGGGG
T ss_pred             HHHHH
Confidence            87764

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.16  E-value=4.4e-11  Score=110.67  Aligned_cols=90  Identities=12%  Similarity=0.067  Sum_probs=64.2

Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH-HHHHHHH---Hhc-CcEEEEEecCHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESI-DALADAI---NEY-KGGVIIVSHDER  132 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~-~~l~~~l---~~~-~~tiiivsHd~~  132 (184)
                      +..+|+.+... +..+.+|+|+++ +++|++++.+|+++||||||+|+|+... ..++..+   .+. +.++|++||+.+
T Consensus       836 ~~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e  913 (1022)
T 2o8b_B          836 FTRLGASDRIM-SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS  913 (1022)
T ss_dssp             EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred             HHHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence            34456654443 256788888875 9999999999999999999999999864 3344444   333 789999999999


Q ss_pred             HHHhhcCeEEEEeCCeEE
Q psy11928        133 LIRDTECTLWVIENQTIE  150 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~  150 (184)
                      ++..+|+++.++ +|++.
T Consensus       914 l~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          914 LVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             HHHHTSSCSSEE-EEEEE
T ss_pred             HHHHhCCcceee-cCeEE
Confidence            999999987665 35553

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.16  E-value=7.8e-11  Score=94.58  Aligned_cols=78  Identities=21%  Similarity=0.207  Sum_probs=58.1

Q ss_pred             cccCCChhH-HHHHHHHHHHhcCCCEEEeeCCCC---C---CCH-HHHHHHHHHHH----hcCcEEEEEecCH--H----
Q psy11928         71 KMKDLSGGQ-KARVALAELTLNAPDVIILDEPTN---N---LDI-ESIDALADAIN----EYKGGVIIVSHDE--R----  132 (184)
Q Consensus        71 ~~~~LSgG~-kqrv~laral~~~p~illlDEPt~---~---LD~-~~~~~l~~~l~----~~~~tiiivsHd~--~----  132 (184)
                      .+.++|.++ +||+. ++++..+|+++++||||+   +   +|. .....+.+.|+    +.+.|||++||+.  +    
T Consensus       126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~  204 (296)
T 1cr0_A          126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKA  204 (296)
T ss_dssp             CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-------
T ss_pred             CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccc
Confidence            346789998 77777 999999999999999999   5   455 55566666664    4588999999995  5    


Q ss_pred             ----------------HHHhhcCeEEEEeCCeE
Q psy11928        133 ----------------LIRDTECTLWVIENQTI  149 (184)
Q Consensus       133 ----------------~~~~~~~~i~~l~~g~i  149 (184)
                                      .+...||++++|++|+.
T Consensus       205 ~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          205 HEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             ----------CCC---CHHHHCSEEEEEEEC--
T ss_pred             cccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence                            78889999999988754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.11  E-value=3.9e-13  Score=102.90  Aligned_cols=76  Identities=13%  Similarity=-0.023  Sum_probs=59.9

Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC----CHHHHHHHHHHHHhc----CcEEEEEec
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNL----DIESIDALADAINEY----KGGVIIVSH  129 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~L----D~~~~~~l~~~l~~~----~~tiiivsH  129 (184)
                      ++.+|+....+ +++..||           +|+.+|++++|||||+++    |+..+..+.+.+.+.    +.|+|+|||
T Consensus       119 l~~~gl~~~~~-~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH  186 (207)
T 1znw_A          119 VDLAGARAIKK-TMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR  186 (207)
T ss_dssp             CCHHHHHHHHH-HCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS
T ss_pred             eCHHHHHHHHH-hcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC
Confidence            34445543333 4677787           899999999999999998    777888888777543    679999999


Q ss_pred             CHHHHHhhcCeEEEEe
Q psy11928        130 DERLIRDTECTLWVIE  145 (184)
Q Consensus       130 d~~~~~~~~~~i~~l~  145 (184)
                      |++++..+||+++++.
T Consensus       187 dl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          187 RLESACAELVSLLVGT  202 (207)
T ss_dssp             SHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999998774

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.07  E-value=7.9e-12  Score=106.18  Aligned_cols=127  Identities=12%  Similarity=0.040  Sum_probs=86.5

Q ss_pred             cccCcccCCceeEEecCC-------------------eEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNHR-------------------LRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~-------------------~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   62 (184)
                      .|+|+.+|++|.|...+.                   +.++|++|...+ .....++.++....        .+.....+
T Consensus       176 ~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~-~~~~~~v~~~~~~~--------ae~~~~~~  246 (438)
T 2dpy_A          176 MMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVS-PLLRMQGAAYATRI--------AEDFRDRG  246 (438)
T ss_dssp             HHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSC-HHHHHHHHHHHHHH--------HHHHHTTT
T ss_pred             HHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCC-HHHHHHHHHHHHHH--------HHHHHhCC
Confidence            478999999999976432                   358999996321 11222222222110        01111111


Q ss_pred             --CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-------Cc-----EEEEEe
Q psy11928         63 --LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-------KG-----GVIIVS  128 (184)
Q Consensus        63 --l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-------~~-----tiiivs  128 (184)
                        ..... + .+..||+|| |||+||   +.+|++      |+|||+.....+.+++.+.       |.     ||+++|
T Consensus       247 ~~v~~~l-d-~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~t  314 (438)
T 2dpy_A          247 QHVLLIM-D-SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEG  314 (438)
T ss_dssp             CEEEEEE-E-CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSS
T ss_pred             CCHHHHH-H-hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeC
Confidence              11112 2 478899999 999999   888887      9999999999999999754       32     899999


Q ss_pred             cCHHHHHhhcCeEEEEeCCeEEE
Q psy11928        129 HDERLIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       129 Hd~~~~~~~~~~i~~l~~g~i~~  151 (184)
                      ||++  ..+||+++++.+|+++.
T Consensus       315 Hdl~--~~iad~v~~l~dG~Ivl  335 (438)
T 2dpy_A          315 DDQQ--DPIADSARAILDGHIVL  335 (438)
T ss_dssp             SCSC--CHHHHHHHHHSSEEEEE
T ss_pred             CCcc--chhhceEEEEeCcEEEE
Confidence            9998  56889988888888754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.06  E-value=4.3e-12  Score=96.30  Aligned_cols=94  Identities=11%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             cccCCChhHHHHH-HHHH---HHhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHhcCcEEE---EEecCH--HHHHhhcC
Q psy11928         71 KMKDLSGGQKARV-ALAE---LTLNAPDVIILDE--PTNNLDIESIDALADAINEYKGGVI---IVSHDE--RLIRDTEC  139 (184)
Q Consensus        71 ~~~~LSgG~kqrv-~lar---al~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~tii---ivsHd~--~~~~~~~~  139 (184)
                      +...+|+|||+++ ++.+   |++.+|+++|+||  |++.+|+...+.+.+++.....+|+   .|||+.  .+++++++
T Consensus        80 ~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~  159 (189)
T 2i3b_A           80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRN  159 (189)
T ss_dssp             SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHT
T ss_pred             EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHee
Confidence            4567999999888 4444   5899999999999  9999999999999999987644443   456987  56665554


Q ss_pred             eEEEEeCCeEEEec-CChhHHHHHHHHHhh
Q psy11928        140 TLWVIENQTIEEID-GDFDDYRKELLEALG  168 (184)
Q Consensus       140 ~i~~l~~g~i~~~~-~~~~~~~~~~~~~~~  168 (184)
                          +.+|++.... .+.+...+++.+.+.
T Consensus       160 ----~~~~~i~~~~~~nr~~~~~~i~~~~~  185 (189)
T 2i3b_A          160 ----RKDVKVFNVTKENRNHLLPDIVTCVQ  185 (189)
T ss_dssp             ----TCCSEEEECCSSSGGGHHHHHHHHHT
T ss_pred             ----cCCcEEEEeChHhHHHHHHHHHHHHH
Confidence                4677776543 466677777666553

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.03  E-value=4.4e-10  Score=86.12  Aligned_cols=74  Identities=4%  Similarity=-0.006  Sum_probs=59.6

Q ss_pred             CCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCC--CHHHHHHHHHHHH----hcCcEEEEEecCH--------HHHHhh
Q psy11928         74 DLSGGQKARVALAELTLNAPD--VIILDEPTNNL--DIESIDALADAIN----EYKGGVIIVSHDE--------RLIRDT  137 (184)
Q Consensus        74 ~LSgG~kqrv~laral~~~p~--illlDEPt~~L--D~~~~~~l~~~l~----~~~~tiiivsHd~--------~~~~~~  137 (184)
                      ..|.++.++...+.+...+|+  ++++||||+.+  |+.....+.+.|+    +.+.|||++||+.        ..+..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~  182 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV  182 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence            458999888888888888999  99999999888  9887777777664    3478999999999        558889


Q ss_pred             cCeEEEEeCC
Q psy11928        138 ECTLWVIENQ  147 (184)
Q Consensus       138 ~~~i~~l~~g  147 (184)
                      ||++++++..
T Consensus       183 ~d~vi~l~~~  192 (235)
T 2w0m_A          183 ADGIIRFRRM  192 (235)
T ss_dssp             CSEEEEEEEE
T ss_pred             eeEEEEEEEE
Confidence            9999998753

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.99  E-value=3.7e-10  Score=101.70  Aligned_cols=64  Identities=23%  Similarity=0.221  Sum_probs=56.5

Q ss_pred             ccCCChhHHHHHHHHHHH--hcCCCEEEeeCC---CCCCCHHHH-HHHHHHHHhcCcEEEEEecCHHHHH
Q psy11928         72 MKDLSGGQKARVALAELT--LNAPDVIILDEP---TNNLDIESI-DALADAINEYKGGVIIVSHDERLIR  135 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral--~~~p~illlDEP---t~~LD~~~~-~~l~~~l~~~~~tiiivsHd~~~~~  135 (184)
                      ...+|+|+++++.+++++  +.+|+++|||||   |++||+.+. ..+.+.+.+.+.|+|++||+.++..
T Consensus       633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~  702 (765)
T 1ewq_A          633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  702 (765)
T ss_dssp             --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            356899999999999999  999999999999   999999886 5688888877889999999998864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.96  E-value=7.8e-10  Score=88.12  Aligned_cols=83  Identities=6%  Similarity=0.018  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCC--CCCHHHH---HHHHHHH----Hh
Q psy11928         49 LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTN--NLDIESI---DALADAI----NE  119 (184)
Q Consensus        49 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~--~LD~~~~---~~l~~~l----~~  119 (184)
                      .......++++.+++..... +++..||+|+.|++   ++++.+|+++++||||+  ++|....   ..+++.|    ++
T Consensus        94 ~~~~~~~~~~~~l~l~~~~~-~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~  169 (279)
T 1nlf_A           94 LSAEERQAVADGLLIQPLIG-SLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD  169 (279)
T ss_dssp             SCHHHHHHHHHHEEECCCTT-SCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cChhhhhhccCceEEeecCC-CCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence            34445566777777765544 47899999997765   68888999999999999  9997433   5555544    34


Q ss_pred             cCcEEEEEecCHHHHH
Q psy11928        120 YKGGVIIVSHDERLIR  135 (184)
Q Consensus       120 ~~~tiiivsHd~~~~~  135 (184)
                      .+.|||++||+.....
T Consensus       170 ~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          170 TGCSIVFLHHASKGAA  185 (279)
T ss_dssp             HCCEEEEEEEC-----
T ss_pred             cCCEEEEEecCCCccc
Confidence            5889999999987763

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.90  E-value=1.1e-11  Score=100.59  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=61.5

Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHH
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDER  132 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~  132 (184)
                      .+.+.++.+ +....+   ...||||||||   |||++.+|+|||    |++||+.+...+..           +||++.
T Consensus       183 ~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~  240 (305)
T 2v9p_A          183 ACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQ  240 (305)
T ss_dssp             HHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEE
T ss_pred             HHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHH
Confidence            344555553 433222   68999999999   999999999999    99999998887752           289988


Q ss_pred             HHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        133 LIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+ ..||++ +|++|++++ .++.+++
T Consensus       241 ~~-~~aD~i-vl~~G~iv~-~g~~~el  264 (305)
T 2v9p_A          241 TF-RFEQPC-TDESGEQPF-NITDADW  264 (305)
T ss_dssp             EE-ECCCCC-CCC---CCC-CCCHHHH
T ss_pred             HH-HhCCEE-EEeCCEEEE-eCCHHHH
Confidence            76 579999 999999974 6777666

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.88  E-value=8.8e-09  Score=78.39  Aligned_cols=77  Identities=9%  Similarity=0.039  Sum_probs=57.3

Q ss_pred             cccCCChhH--HHHHHHHHHHhcC-CCEEEeeCCCCCCCHHH--------HHHH----HHHHHhcCcEEEEEecCHH---
Q psy11928         71 KMKDLSGGQ--KARVALAELTLNA-PDVIILDEPTNNLDIES--------IDAL----ADAINEYKGGVIIVSHDER---  132 (184)
Q Consensus        71 ~~~~LSgG~--kqrv~laral~~~-p~illlDEPt~~LD~~~--------~~~l----~~~l~~~~~tiiivsHd~~---  132 (184)
                      .+..+|+++  ++++..+++++.+ |+++++||||+.+|+..        ...+    .++.++.+.|||+++|...   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~  160 (220)
T 2cvh_A           81 ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSR  160 (220)
T ss_dssp             EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCT
T ss_pred             EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCC
Confidence            345667765  4578888899876 99999999999999732        1223    2333455889999999865   


Q ss_pred             ----------HHHhhcCeEEEEeCC
Q psy11928        133 ----------LIRDTECTLWVIENQ  147 (184)
Q Consensus       133 ----------~~~~~~~~i~~l~~g  147 (184)
                                .+...||.+++++..
T Consensus       161 ~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          161 TEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             TSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             CCccccCCCcceeecCcEEEEEEEe
Confidence                      577899999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.79  E-value=9e-10  Score=95.39  Aligned_cols=56  Identities=7%  Similarity=0.037  Sum_probs=47.3

Q ss_pred             cCCCEEEeeCCCC-----CCCHHHHHHHHHHHHh---cCcEEEEEecCHHHH---------HhhcCeEEEEeC
Q psy11928         91 NAPDVIILDEPTN-----NLDIESIDALADAINE---YKGGVIIVSHDERLI---------RDTECTLWVIEN  146 (184)
Q Consensus        91 ~~p~illlDEPt~-----~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~---------~~~~~~i~~l~~  146 (184)
                      .+|+++++||||+     +||+..+..+.++++.   .+.|||++||+++++         ..+||++++|++
T Consensus       137 g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            3588999999998     4689999888888754   478999999999884         566999999988

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.78  E-value=5.3e-09  Score=80.12  Aligned_cols=74  Identities=14%  Similarity=0.227  Sum_probs=47.8

Q ss_pred             CCChhHHH-HHHHHHHHhc-------CCCEEEeeCCCCCCCHH-------H-----HHHHHHHH----HhcCcEEEEEec
Q psy11928         74 DLSGGQKA-RVALAELTLN-------APDVIILDEPTNNLDIE-------S-----IDALADAI----NEYKGGVIIVSH  129 (184)
Q Consensus        74 ~LSgG~kq-rv~laral~~-------~p~illlDEPt~~LD~~-------~-----~~~l~~~l----~~~~~tiiivsH  129 (184)
                      .++.++++ .+..++.++.       +|+++++||||+++|+.       .     ...+.+.+    ++.+.|||+|||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH  178 (231)
T 4a74_A           99 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ  178 (231)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence            44555443 3555665555       99999999999999983       1     11333333    455889999999


Q ss_pred             ----CHHHHHhhcCeEEEEeCC
Q psy11928        130 ----DERLIRDTECTLWVIENQ  147 (184)
Q Consensus       130 ----d~~~~~~~~~~i~~l~~g  147 (184)
                          +-..+...||+++++++|
T Consensus       179 ~~~~~g~~~~~~~d~~l~l~~~  200 (231)
T 4a74_A          179 VQANGGHILAHSATLRVYLRKG  200 (231)
T ss_dssp             CC---------CCSEEEEEEEC
T ss_pred             cccCcchhhHhhceEEEEEEec
Confidence                555588999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.73  E-value=2.9e-11  Score=93.39  Aligned_cols=87  Identities=9%  Similarity=0.072  Sum_probs=64.4

Q ss_pred             HHHHHHHHhhCCCCcccccccccCCChhHHHHHHH-----HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-----
Q psy11928         51 YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVAL-----AELTLNAPDVIILDEPTNNLDIESIDALADAINEY-----  120 (184)
Q Consensus        51 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l-----aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----  120 (184)
                      ...+.++++.....  .   ...+|||||+||++|     +++++.+|++++|||||+++|..+...+.+.+.+.     
T Consensus       104 ~~~i~~~l~~~~~~--i---l~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~  178 (218)
T 1z6g_A          104 KSEYDKAKEQNKIC--L---FEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH  178 (218)
T ss_dssp             HHHHHHHHHTTCEE--E---EEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcE--E---EEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            44566667654321  1   126799999999999     89999999999999999999998877777666432     


Q ss_pred             -----CcEEEEEecCHHHHHhhcCeEE
Q psy11928        121 -----KGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus       121 -----~~tiiivsHd~~~~~~~~~~i~  142 (184)
                           ..+.|+++||++++...+++++
T Consensus       179 ~~h~~~~d~iiv~~~~~ea~~~~~~ii  205 (218)
T 1z6g_A          179 EANLLNFNLSIINDDLTLTYQQLKNYL  205 (218)
T ss_dssp             HHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred             hhcccCCCEEEECCCHHHHHHHHHHHH
Confidence                 3467778888777766655543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.72  E-value=4.9e-09  Score=83.19  Aligned_cols=56  Identities=27%  Similarity=0.234  Sum_probs=46.0

Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEE
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      |++|+++|..+|+++++||||   |+.+...+.+.. +.+.+|+++||+.+ +...|++++
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~  143 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIV  143 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHH
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHh
Confidence            899999999999999999999   999877766654 45889999999977 445566543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.63  E-value=1.5e-09  Score=88.07  Aligned_cols=119  Identities=16%  Similarity=0.106  Sum_probs=70.8

Q ss_pred             cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~   62 (184)
                      .|+|+++|++|+|.+.+                 +..+++++|++.  +.+..++.+.+...  .+..    ..+++..|
T Consensus       121 ~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~~~~~~~~d----~~llDt~G  194 (304)
T 1rj9_A          121 KLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQAMKARGYD----LLFVDTAG  194 (304)
T ss_dssp             HHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHHHHHHHTCS----EEEECCCC
T ss_pred             HHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHHHHHhCCCC----EEEecCCC
Confidence            46788999999997642                 134889999763  33333333333211  0100    01344455


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPD--VIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL  133 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~  133 (184)
                      ..+... ..+.+|   .+||++||||++.+|+  ++.|| |+++.+.  ...+.++-...+.|+|++||+.+.
T Consensus       195 ~~~~~~-~~~~eL---s~~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~~t~iivTh~d~~  260 (304)
T 1rj9_A          195 RLHTKH-NLMEEL---KKVKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVGLTGVIVTKLDGT  260 (304)
T ss_dssp             CCTTCH-HHHHHH---HHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred             CCCchH-HHHHHH---HHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcCCcEEEEECCccc
Confidence            543222 234444   4899999999999999  66667 5555432  233333334558899999998543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.62  E-value=1.6e-08  Score=91.50  Aligned_cols=76  Identities=11%  Similarity=0.000  Sum_probs=51.2

Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH----HHHHHHh-cCcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA----LADAINE-YKGGVIIVSHDERLIRDTECTLWVIE  145 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~----l~~~l~~-~~~tiiivsHd~~~~~~~~~~i~~l~  145 (184)
                      ..+.+|+||++. ..+...+.+|+++|||||++|+|+.....    +.+.+.+ .+.++|++||+.+... +|+++..+.
T Consensus       666 ~~stf~~e~~~~-~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~  743 (800)
T 1wb9_A          666 GRSTFMVEMTET-ANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVA  743 (800)
T ss_dssp             ----CHHHHHHH-HHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEE
T ss_pred             hhhhhhHHHHHH-HHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceE
Confidence            456778887754 44455689999999999988888765443    3444444 4789999999998764 777654444


Q ss_pred             CCe
Q psy11928        146 NQT  148 (184)
Q Consensus       146 ~g~  148 (184)
                      +|+
T Consensus       744 n~~  746 (800)
T 1wb9_A          744 NVH  746 (800)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.62  E-value=1.7e-09  Score=89.23  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=60.5

Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-----Cc-----EEEEEecCHHHHHhhcCe
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-----KG-----GVIIVSHDERLIRDTECT  140 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----~~-----tiiivsHd~~~~~~~~~~  140 (184)
                      .+..||+|| ||+++|   +.+|++      |+|||+.....+.+++.+.     |.     ||+++|||++  ..+||+
T Consensus       168 ~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~  235 (347)
T 2obl_A          168 SVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDE  235 (347)
T ss_dssp             THHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHH
T ss_pred             hHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhhh
Confidence            688999999 899999   678877      9999999999999999764     34     8999999998  678999


Q ss_pred             EEEEeCCeEEE
Q psy11928        141 LWVIENQTIEE  151 (184)
Q Consensus       141 i~~l~~g~i~~  151 (184)
                      ++++.+|+++.
T Consensus       236 v~~i~dG~Ivl  246 (347)
T 2obl_A          236 VRSILDGHIVL  246 (347)
T ss_dssp             HHHHCSEEEEB
T ss_pred             eEEeeCcEEEE
Confidence            99999999854

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.61  E-value=5.5e-11  Score=90.69  Aligned_cols=110  Identities=6%  Similarity=-0.012  Sum_probs=79.9

Q ss_pred             EEEEecCCCCCCCccCCHHHHHHHhc----CCCHHHHHHHHhhCCCCcccccccccCCChhHH----HHHHHHHHHhcCC
Q psy11928         22 IGRFDQHSGEHLTAEETPAEYLQRLF----NLPYEKARKQLGTFGLAGHAHTIKMKDLSGGQK----ARVALAELTLNAP   93 (184)
Q Consensus        22 ig~v~q~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k----qrv~laral~~~p   93 (184)
                      +++++|++...-....++.+.....+    ....+++.+.++.+++.+... .++.++|+|++    ||++++++++.+|
T Consensus        34 i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~  112 (211)
T 3asz_A           34 VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEG  112 (211)
T ss_dssp             EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEE-ECCEETTTTEECSSCEEECCCSEEEEES
T ss_pred             eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcC-CCcccCcccCCCCCeEEeCCCcEEEEee
Confidence            89999987411112334444432211    123456777788888776665 47899999974    6889999999999


Q ss_pred             CEEEeeCCCCC-------CCHHHHHHHHHHHHh----cCcEEEEEecCHH
Q psy11928         94 DVIILDEPTNN-------LDIESIDALADAINE----YKGGVIIVSHDER  132 (184)
Q Consensus        94 ~illlDEPt~~-------LD~~~~~~l~~~l~~----~~~tiiivsHd~~  132 (184)
                      +++++||||++       ||+.....+.+.+.+    .+.|++.++|+..
T Consensus       113 ~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          113 ILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             TTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             hhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999       899888877777754    3789999999853

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.59  E-value=1.4e-09  Score=95.83  Aligned_cols=107  Identities=14%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             cccCcccC-CceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhh--CCCC
Q psy11928          2 YAHCDLQP-QQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGT--FGLA   64 (184)
Q Consensus         2 ~~~G~~~p-~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~   64 (184)
                      .|+|+..| ++|+|...+              +..+||+||++.  +....++.+.+..        ....+..  -++.
T Consensus        64 ~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i~~--------~~~~~~~~~~~~s  133 (608)
T 3szr_A           64 ALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEINK--------AQNAIAGEGMGIS  133 (608)
T ss_dssp             HHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CC--CCCHHHHHTTHHH--------HHHHHHCSSSCCC
T ss_pred             HHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeeccccc--CCCHHHHHHHHHH--------HHHHhcCCccccc
Confidence            47899988 799986432              346899998763  3333333222211        1111111  1121


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCC------CCCCCHHHHHHHHHHHHhc-----CcEEEEEecCHHH
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEP------TNNLDIESIDALADAINEY-----KGGVIIVSHDERL  133 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEP------t~~LD~~~~~~l~~~l~~~-----~~tiiivsHd~~~  133 (184)
                      .               +++.++.+....|+++|+|||      |+|||+..+..+.+++.++     +.+++++|||.+.
T Consensus       134 ~---------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~  198 (608)
T 3szr_A          134 H---------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI  198 (608)
T ss_dssp             S---------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred             h---------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence            1               112222333458999999999      9999999999999988774     4589999999763

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.56  E-value=2.8e-08  Score=77.62  Aligned_cols=108  Identities=10%  Similarity=0.118  Sum_probs=67.6

Q ss_pred             eEEEEEecCCCCCCCccCCHHHHHHHh---cC------CCHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHh
Q psy11928         20 LRIGRFDQHSGEHLTAEETPAEYLQRL---FN------LPYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTL   90 (184)
Q Consensus        20 ~~ig~v~q~~~~~l~~~~~~~~~~~~~---~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~   90 (184)
                      +.+++++|+..   ....+..+.....   ..      ...+.+.+.++.+  ..... .++..||+||+||+.+ ++++
T Consensus        59 ~~i~~v~~d~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~-~~~~~ls~g~~~r~~~-~~~~  131 (245)
T 2jeo_A           59 RKVVILSQDRF---YKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKT-VEVPTYDFVTHSRLPE-TTVV  131 (245)
T ss_dssp             CSEEEEEGGGG---BCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCC-EEECCEETTTTEECSS-CEEE
T ss_pred             CceEEEeCCcC---ccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCC-eecccccccccCccCc-eEEe
Confidence            46889999852   2233444433211   11      1123344555443  22233 4789999999999988 6888


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHH-HhhcCeE
Q psy11928         91 NAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLI-RDTECTL  141 (184)
Q Consensus        91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~-~~~~~~i  141 (184)
                      .+|+++|+|||....+..    +.+   ..+.+|+++||+...+ ..+++.+
T Consensus       132 ~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~  176 (245)
T 2jeo_A          132 YPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV  176 (245)
T ss_dssp             CCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence            999999999998887764    211   1377999999974444 4444434

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.51  E-value=3.2e-08  Score=81.85  Aligned_cols=56  Identities=25%  Similarity=0.204  Sum_probs=46.9

Q ss_pred             HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         84 ALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        84 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      +|++||.++|+++++||||   |.++...+.+.. +.|.+|++++|+.+.+ ..++|++.|
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l  243 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDV  243 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHT
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhh
Confidence            8999999999999999999   777776666654 4488999999999987 567877665

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.43  E-value=6.2e-09  Score=84.16  Aligned_cols=58  Identities=16%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC-CCHHHHHHHHHHHHh-cCcEEEEEecCHH
Q psy11928         70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTNN-LDIESIDALADAINE-YKGGVIIVSHDER  132 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~-LD~~~~~~l~~~l~~-~~~tiiivsHd~~  132 (184)
                      +++.++|||||||+.+||+++    ++++||||++ ||+...+ +++.+.. .+.++|+++||+.
T Consensus       109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~-~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVA-FMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHH-HHHHHHhcCCEEEEEEeCCCC
Confidence            478999999999999999886    9999999985 9998853 3333433 3678999999973

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.41  E-value=2e-07  Score=76.85  Aligned_cols=60  Identities=20%  Similarity=0.187  Sum_probs=44.9

Q ss_pred             ChhHHHHHHHHHHHh-------cCCCEEEeeCCCCCCCHHH------------HHHHHHHH----HhcCcEEEEEecCHH
Q psy11928         76 SGGQKARVALAELTL-------NAPDVIILDEPTNNLDIES------------IDALADAI----NEYKGGVIIVSHDER  132 (184)
Q Consensus        76 SgG~kqrv~laral~-------~~p~illlDEPt~~LD~~~------------~~~l~~~l----~~~~~tiiivsHd~~  132 (184)
                      |.+++|++.++++++       .+|+++++||||+++|+..            ...+...|    ++.+.|||+++|...
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            678999999999998       6899999999999999852            23343333    345789999999877


Q ss_pred             HHH
Q psy11928        133 LIR  135 (184)
Q Consensus       133 ~~~  135 (184)
                      ...
T Consensus       288 ~~~  290 (349)
T 1pzn_A          288 RPD  290 (349)
T ss_dssp             ---
T ss_pred             ccc
Confidence            554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.40  E-value=1.8e-07  Score=70.44  Aligned_cols=67  Identities=15%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             HHHHHHhhCCCCccc-ccccccCCChhHHHH-HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc
Q psy11928         53 KARKQLGTFGLAGHA-HTIKMKDLSGGQKAR-VALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY  120 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~-~~~~~~~LSgG~kqr-v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~  120 (184)
                      ++.+.+...++.... .+ ++..+|+||+|| +..+++++.+|+.+++|||||++|..+...+.+.|.+.
T Consensus       128 ~~~~~~~~~~~~~~~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~  196 (210)
T 1pui_A          128 QMIEWAVDSNIAVLVLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW  196 (210)
T ss_dssp             HHHHHHHHTTCCEEEEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence            345566677776432 34 689999999999 89999999999999999999999999999999888653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.10  E-value=1.4e-05  Score=61.35  Aligned_cols=75  Identities=12%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             cCCChhHHHH-HHHHHHHh--cCCCEEEeeCCCCCCCHH-------H-----HHHHHHHH----HhcCcEEEEEecCHHH
Q psy11928         73 KDLSGGQKAR-VALAELTL--NAPDVIILDEPTNNLDIE-------S-----IDALADAI----NEYKGGVIIVSHDERL  133 (184)
Q Consensus        73 ~~LSgG~kqr-v~laral~--~~p~illlDEPt~~LD~~-------~-----~~~l~~~l----~~~~~tiiivsHd~~~  133 (184)
                      ..++..+... +.-+..++  .+|+++++|||++.+|+.       .     ...+...+    ++.+.|||+++|....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~  176 (243)
T 1n0w_A           97 RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ  176 (243)
T ss_dssp             ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred             ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec
Confidence            3456555433 22233333  589999999999999975       2     22333333    3458899999997665


Q ss_pred             HHh-------------------hcCeEEEEeCC
Q psy11928        134 IRD-------------------TECTLWVIENQ  147 (184)
Q Consensus       134 ~~~-------------------~~~~i~~l~~g  147 (184)
                      ...                   .||.+++++.+
T Consensus       177 ~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          177 VDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             --------------------CCTTCEEEEEEEC
T ss_pred             CCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence            433                   78999988764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.80  E-value=4.4e-05  Score=56.24  Aligned_cols=43  Identities=19%  Similarity=0.164  Sum_probs=36.5

Q ss_pred             HhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928         89 TLNAPDVIILDEPTN-NLDIESIDALADAINE---YKGGVIIVSHDE  131 (184)
Q Consensus        89 l~~~p~illlDEPt~-~LD~~~~~~l~~~l~~---~~~tiiivsHd~  131 (184)
                      .+.+|++|++|||++ ++|+..+..+.+++.+   .+.++|++||..
T Consensus        97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            356999999999985 9999999988888864   368999999975

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.74  E-value=2.2e-05  Score=65.05  Aligned_cols=54  Identities=28%  Similarity=0.241  Sum_probs=41.4

Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCe
Q psy11928         82 RVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECT  140 (184)
Q Consensus        82 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~  140 (184)
                      +.+|+++|..+|+++++|||+   |+.....+.+.. ..+.+|+.++|+.+ +...++|
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~r  252 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHR  252 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHH
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHH
Confidence            579999999999999999999   777765555543 34789999999855 4444444

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.72  E-value=2.8e-05  Score=63.12  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=37.0

Q ss_pred             HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHH
Q psy11928         89 TLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERL  133 (184)
Q Consensus        89 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~  133 (184)
                      +..+|+++|+|||++ ||+.+...+.+.+.+.  +.++|++||+...
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~  176 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP  176 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence            778999999999999 9999999999999875  4689999999654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.61  E-value=7.9e-06  Score=68.85  Aligned_cols=57  Identities=12%  Similarity=0.170  Sum_probs=41.7

Q ss_pred             CCChhHHHHHHHHHHHhcCCC---EEEeeCCC-CCCCHHHHHHHHHHHHhcCcEEEEEecCHH
Q psy11928         74 DLSGGQKARVALAELTLNAPD---VIILDEPT-NNLDIESIDALADAINEYKGGVIIVSHDER  132 (184)
Q Consensus        74 ~LSgG~kqrv~laral~~~p~---illlDEPt-~~LD~~~~~~l~~~l~~~~~tiiivsHd~~  132 (184)
                      .++.+++||++|+|+++.+|+   ++++|||| ++||+.....+ +.+.. +.+||+|.|-.+
T Consensus       118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l-k~L~~-~v~iIlVinK~D  178 (418)
T 2qag_C          118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM-KRLHE-KVNIIPLIAKAD  178 (418)
T ss_dssp             HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH-HHHTT-TSEEEEEEESTT
T ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH-HHHhc-cCcEEEEEEccc
Confidence            356778899999999999999   99999999 69999875444 44444 667777777543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.56  E-value=1.9e-07  Score=69.66  Aligned_cols=80  Identities=11%  Similarity=-0.004  Sum_probs=58.0

Q ss_pred             ccCC--ChhHHHHHHHHH------HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecC-HHHHHhhcC
Q psy11928         72 MKDL--SGGQKARVALAE------LTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHD-ERLIRDTEC  139 (184)
Q Consensus        72 ~~~L--SgG~kqrv~lar------al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd-~~~~~~~~~  139 (184)
                      ...+  |+|++|++.++.      ++..+|+...+|+   ++|+..+.. ++.+...   +.++|.+||. ++.++.+|+
T Consensus        90 ~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~  165 (189)
T 2bdt_A           90 LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVK  165 (189)
T ss_dssp             HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHH
T ss_pred             HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHH
Confidence            3445  899999988888      8899998888884   899988777 6666544   4689999999 999999999


Q ss_pred             eEEEEeCCeEEEecCChhH
Q psy11928        140 TLWVIENQTIEEIDGDFDD  158 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~  158 (184)
                      +|+  ++|+++. .++.+.
T Consensus       166 ~i~--~~g~~~~-~~~~~~  181 (189)
T 2bdt_A          166 NLK--TNPRFIF-CMAGDP  181 (189)
T ss_dssp             HHH--HCGGGSC-C-----
T ss_pred             HHh--hCCcEEE-eecCCc
Confidence            987  8998863 555444

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.56  E-value=0.00029  Score=59.00  Aligned_cols=57  Identities=9%  Similarity=0.138  Sum_probs=40.0

Q ss_pred             cCCCEEEeeCCCCCCCHHHH------------HHHHHHH----HhcCcEEEEEecCH-------------------HHHH
Q psy11928         91 NAPDVIILDEPTNNLDIESI------------DALADAI----NEYKGGVIIVSHDE-------------------RLIR  135 (184)
Q Consensus        91 ~~p~illlDEPt~~LD~~~~------------~~l~~~l----~~~~~tiiivsHd~-------------------~~~~  135 (184)
                      .+|+++++|||++.+|....            ..+++.|    ++++.|||+|+|..                   ..+.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            57999999999999996422            3333433    45689999999982                   2346


Q ss_pred             hhcCeEEEEeCC
Q psy11928        136 DTECTLWVIENQ  147 (184)
Q Consensus       136 ~~~~~i~~l~~g  147 (184)
                      ..+|.++.++.+
T Consensus       352 ~~ad~vl~L~~~  363 (400)
T 3lda_A          352 YSSTTRLGFKKG  363 (400)
T ss_dssp             HHCSEEEEEEEC
T ss_pred             HhcceEEEEEec
Confidence            778888888765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.41  E-value=0.00015  Score=52.21  Aligned_cols=42  Identities=17%  Similarity=0.145  Sum_probs=32.5

Q ss_pred             HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcE-EEEEecC
Q psy11928         88 LTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGG-VIIVSHD  130 (184)
Q Consensus        88 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~t-iiivsHd  130 (184)
                      +++.+|++|++|||++ ++....+.+.+++++   .+.+ +|++||.
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence            4577899999999998 666557778787764   3677 8888884

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.38  E-value=7.3e-06  Score=63.69  Aligned_cols=45  Identities=29%  Similarity=0.365  Sum_probs=38.7

Q ss_pred             cccccCCChhHHHHHHHHHHH-hcCCCEEEee----CCCCCCCHHHHHHHHHHHHhc
Q psy11928         69 TIKMKDLSGGQKARVALAELT-LNAPDVIILD----EPTNNLDIESIDALADAINEY  120 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral-~~~p~illlD----EPt~~LD~~~~~~l~~~l~~~  120 (184)
                      ++++.+|||    |+   +++ +.+|+++++|    |||++||+.+...+.+.+.++
T Consensus       147 ~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~  196 (246)
T 2bbw_A          147 RRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY  196 (246)
T ss_dssp             TEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred             cCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence            357889999    55   777 9999999999    999999999998888888664

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.38  E-value=1.9e-05  Score=65.07  Aligned_cols=73  Identities=16%  Similarity=0.041  Sum_probs=51.0

Q ss_pred             cccCCChhHHHHHHHHHHHh-cCCCEEEeeC---CC------CCCCHHHHHHHHHHHH----hcCcEEEEEecCHHHHHh
Q psy11928         71 KMKDLSGGQKARVALAELTL-NAPDVIILDE---PT------NNLDIESIDALADAIN----EYKGGVIIVSHDERLIRD  136 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~-~~p~illlDE---Pt------~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~  136 (184)
                      .+..+|+|++|+..++++.. .+|++++|||   |+      .++|+..+..+.+.+.    +.+.+|++++|. ...++
T Consensus       255 ~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r  333 (365)
T 1lw7_A          255 QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDR  333 (365)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHH
Confidence            45667788888888888774 6999999999   65      5899999988888874    337899999975 34445


Q ss_pred             hcCeEEEE
Q psy11928        137 TECTLWVI  144 (184)
Q Consensus       137 ~~~~i~~l  144 (184)
                      +++++.++
T Consensus       334 ~~~~i~~i  341 (365)
T 1lw7_A          334 YNQVKAVI  341 (365)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            56555433

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.33  E-value=1.5e-05  Score=64.62  Aligned_cols=65  Identities=15%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             HhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHH
Q psy11928         58 LGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIR  135 (184)
Q Consensus        58 l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~  135 (184)
                      +..+++.....  ...++|+||+||+..+++++.+|+++  |||         ..+.+.+++.  +.+|+++||+...+.
T Consensus       127 l~~vd~~~~~~--~~~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~  193 (318)
T 1nij_A          127 IALVDAVHADE--QMNQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLG  193 (318)
T ss_dssp             EEEEETTTHHH--HHHHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGG
T ss_pred             EEEEEHHHHHH--HHhhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHH
Confidence            34455544333  23489999999999999999999987  999         4455555443  579999999654443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.28  E-value=4.4e-06  Score=67.09  Aligned_cols=38  Identities=16%  Similarity=0.041  Sum_probs=31.9

Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE  108 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~  108 (184)
                      +-.++||||+||+.+|++...+|+|+|+||||+++|+.
T Consensus       131 y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          131 YDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             EETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             CccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            45789999999999874333399999999999999985

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.22  E-value=0.00071  Score=57.93  Aligned_cols=71  Identities=18%  Similarity=0.290  Sum_probs=55.2

Q ss_pred             cccCCChhHHHHHHHHH--HHhc---------------CCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH
Q psy11928         71 KMKDLSGGQKARVALAE--LTLN---------------APDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL  133 (184)
Q Consensus        71 ~~~~LSgG~kqrv~lar--al~~---------------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~  133 (184)
                      ..+.+||||+|-..+|.  +++.               .-.++++||. +-+|.......+++++++|.=+|++|=+  .
T Consensus       376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~  452 (483)
T 3euj_A          376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--N  452 (483)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--S
T ss_pred             ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--h
Confidence            47899999999754444  3322               2357999999 9999999999999999999988898877  4


Q ss_pred             HHhhcCeEEEE
Q psy11928        134 IRDTECTLWVI  144 (184)
Q Consensus       134 ~~~~~~~i~~l  144 (184)
                      +...++.++.+
T Consensus       453 i~p~v~~~~~~  463 (483)
T 3euj_A          453 ISPERGTTYKL  463 (483)
T ss_dssp             CCCSSSEEEEC
T ss_pred             hhhccCceEEE
Confidence            44556666544

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.07  E-value=0.0019  Score=54.65  Aligned_cols=76  Identities=12%  Similarity=0.095  Sum_probs=53.5

Q ss_pred             cccCCChhHHHHHHHHHHHh--cCCCEEEeeCCCCCCCH--------HHHHHHHHHH----HhcCcEEEEEec-------
Q psy11928         71 KMKDLSGGQKARVALAELTL--NAPDVIILDEPTNNLDI--------ESIDALADAI----NEYKGGVIIVSH-------  129 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~--~~p~illlDEPt~~LD~--------~~~~~l~~~l----~~~~~tiiivsH-------  129 (184)
                      ....+|.++.+  ..++.+.  .+|+++++|+++...+.        .....+.+.|    ++++.+||+++|       
T Consensus       292 d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~  369 (454)
T 2r6a_A          292 DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQ  369 (454)
T ss_dssp             CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTT
T ss_pred             CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence            35678998876  4556665  68999999999987743        2223444444    356889999999       


Q ss_pred             --C--HH--------HHHhhcCeEEEEeCCe
Q psy11928        130 --D--ER--------LIRDTECTLWVIENQT  148 (184)
Q Consensus       130 --d--~~--------~~~~~~~~i~~l~~g~  148 (184)
                        |  +.        .+++.||.|+.+..+.
T Consensus       370 ~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~  400 (454)
T 2r6a_A          370 RQDKRPMMSDIRESGSIEQDADIVAFLYRDD  400 (454)
T ss_dssp             C---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred             CCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence              3  22        4677899999987654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.99  E-value=0.00016  Score=59.60  Aligned_cols=83  Identities=13%  Similarity=0.069  Sum_probs=51.4

Q ss_pred             cccCccc-CCceeEEec--------CCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHH----HHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQ-PQQGELKKN--------HRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEK----ARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~-p~~G~i~~~--------~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~l~~~~~   68 (184)
                      .|+|... |++|+|...        ....+++++|+..  +....++.++  ..++.+.+.    +.++++.+|+..+.+
T Consensus       234 ~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~--~l~~l~~~e~~~~~~e~l~~~gl~~f~~  309 (358)
T 2rcn_A          234 ALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREF--GLWHLEPEQITQGFVEFHDYLGHCKYRD  309 (358)
T ss_dssp             HHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTC--CCCCCCHHHHHHTSGGGGGGTTCSSSTT
T ss_pred             HHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHh--hhcCCCHHHHHHHHHHHHHHcCCchhcC
Confidence            4788888 999999754        2346899998753  2111222221  112233322    456788889987665


Q ss_pred             cccccCCChhHHHHHHHHHHHh
Q psy11928         69 TIKMKDLSGGQKARVALAELTL   90 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~   90 (184)
                       .++.+|| ||+||++||++++
T Consensus       310 -~~~~~lS-G~~~r~ala~gli  329 (358)
T 2rcn_A          310 -CKHDADP-GCAIREAVENGAI  329 (358)
T ss_dssp             -CCSSSCT-TCHHHHHHHHTSS
T ss_pred             -CCcccCC-HHHHHHHHHhcCC
Confidence             4789999 9999999998753

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.96  E-value=0.00024  Score=59.79  Aligned_cols=64  Identities=30%  Similarity=0.280  Sum_probs=46.7

Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH---HHHHHHhcCcEEEEEe
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA---LADAINEYKGGVIIVS  128 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~---l~~~l~~~~~tiiivs  128 (184)
                      ++..++++   . .++.+||+|++|++.++++|+..|.++++    |.+|+.....   +.+.+.+.+.+++++|
T Consensus       239 lL~vvDls---~-~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iS  305 (416)
T 1udx_A          239 LLYVLDAA---D-EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVS  305 (416)
T ss_dssp             EEEEEETT---S-CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred             hhEEeCCc---c-CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEE
Confidence            44555554   2 36789999999999999999999999999    9999875532   2333334455666655

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.96  E-value=0.0027  Score=48.36  Aligned_cols=56  Identities=11%  Similarity=0.007  Sum_probs=40.3

Q ss_pred             cCCCEEEeeCCCCCC--CHHHHH----HHHHHHHhcCcEEEEEecCHHH--------HHhhcCeEEEEeC
Q psy11928         91 NAPDVIILDEPTNNL--DIESID----ALADAINEYKGGVIIVSHDERL--------IRDTECTLWVIEN  146 (184)
Q Consensus        91 ~~p~illlDEPt~~L--D~~~~~----~l~~~l~~~~~tiiivsHd~~~--------~~~~~~~i~~l~~  146 (184)
                      .+|+++++|+|++.+  |+....    .+.+.+++.+.|||+++|....        +++.||.++.++.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            689999999999988  553332    3334445668899999998765        4678899988853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.92  E-value=0.0014  Score=50.16  Aligned_cols=45  Identities=13%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928         86 AELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRD  136 (184)
Q Consensus        86 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~  136 (184)
                      +..++..++++|||     ||+.+...+.+.+. .+.||+++||+++++..
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR  145 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH
Confidence            44556678999999     99999999999887 37899999999999875

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.74  E-value=0.00058  Score=61.66  Aligned_cols=70  Identities=20%  Similarity=0.220  Sum_probs=55.3

Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHhc---CcEEEEE-ecCHHHHHhhcCe
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTN-NLDIESIDALADAINEY---KGGVIIV-SHDERLIRDTECT  140 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~---~~tiiiv-sHd~~~~~~~~~~  140 (184)
                      ++.-+|.|+.+|..+++.++.+++++++|||.. +||......+.+.+...   ..+|+++ ||+.+.+..+.+.
T Consensus       187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~  261 (773)
T 2xau_A          187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND  261 (773)
T ss_dssp             SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred             CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence            466789999999999999999999999999996 99987766665555433   2477774 9998877766653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.66  E-value=0.0059  Score=49.99  Aligned_cols=67  Identities=15%  Similarity=0.238  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhcC--CCEEEeeCCCCCC----------CH----HH---HHHHHH---HHHhcCcEEEEEecCHH------
Q psy11928         81 ARVALAELTLNA--PDVIILDEPTNNL----------DI----ES---IDALAD---AINEYKGGVIIVSHDER------  132 (184)
Q Consensus        81 qrv~laral~~~--p~illlDEPt~~L----------D~----~~---~~~l~~---~l~~~~~tiiivsHd~~------  132 (184)
                      +-+.++++++..  |+++++|||++.+          |+    ..   .+.+.+   .+++.+.|||+++|...      
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            446677877654  9999999999998          32    11   122222   23566899999999653      


Q ss_pred             ----------HHHhhcCeEEEEeCC
Q psy11928        133 ----------LIRDTECTLWVIENQ  147 (184)
Q Consensus       133 ----------~~~~~~~~i~~l~~g  147 (184)
                                .+..+|+.++.+..+
T Consensus       206 ~~p~~~~gg~~l~~~ad~~l~lrr~  230 (349)
T 2zr9_A          206 GSPETTTGGKALKFYASVRLDVRRI  230 (349)
T ss_dssp             ----CCSSHHHHHHHCSEEEEEEEE
T ss_pred             CCCcccCCchHhhhccceEEEEEEe
Confidence                      256788887777654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.53  E-value=0.00024  Score=52.47  Aligned_cols=42  Identities=12%  Similarity=0.054  Sum_probs=35.6

Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY  120 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~  120 (184)
                      ++..+|+|++|++.++|++..+|+++        +|+.....+.+.+...
T Consensus       106 ~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l  147 (191)
T 1zp6_A          106 PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL  147 (191)
T ss_dssp             CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred             CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence            56789999999999999999999876        6888888888777543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.51  E-value=0.0012  Score=54.30  Aligned_cols=67  Identities=22%  Similarity=0.169  Sum_probs=45.8

Q ss_pred             ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCC
Q psy11928         76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQ  147 (184)
Q Consensus        76 SgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g  147 (184)
                      +++..++..|+.++..+|+.+++|||...   ...+ +.+.+..-..|++.++|..+ +...++|+..+..+
T Consensus       236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~  302 (361)
T 2gza_A          236 NAPVTAATLLRSCLRMKPTRILLAELRGG---EAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQ  302 (361)
T ss_dssp             ---CCHHHHHHHHTTSCCSEEEESCCCST---HHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTT
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhc
Confidence            34556888999999999999999999862   2222 33333332347899999965 66678888777655

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.24  E-value=0.00027  Score=57.63  Aligned_cols=131  Identities=10%  Similarity=0.034  Sum_probs=71.2

Q ss_pred             cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~   62 (184)
                      .|+|+++|++|+|.+.+                 +..+.+++|...  +.+..++.+.+....  +..    .-+++..|
T Consensus       148 ~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e~l~~~~~~~~d----~vliDtaG  221 (328)
T 3e70_C          148 KLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYDAIQHAKARGID----VVLIDTAG  221 (328)
T ss_dssp             HHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHHHHHHHHHHTCS----EEEEEECC
T ss_pred             HHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHHHHHHHHhccch----hhHHhhcc
Confidence            36788888889887532                 112457777642  333334433332110  000    00133344


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHH---------H
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDER---------L  133 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~---------~  133 (184)
                      ...... ..+.+||       .+++++..+++++++|.++. .  .....+..+-...+.|+|++||.-+         .
T Consensus       222 ~~~~~~-~l~~eL~-------~i~ral~~de~llvLDa~t~-~--~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~  290 (328)
T 3e70_C          222 RSETNR-NLMDEMK-------KIARVTKPNLVIFVGDALAG-N--AIVEQARQFNEAVKIDGIILTKLDADARGGAALSI  290 (328)
T ss_dssp             SCCTTT-CHHHHHH-------HHHHHHCCSEEEEEEEGGGT-T--HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHH
T ss_pred             chhHHH-HHHHHHH-------HHHHHhcCCCCEEEEecHHH-H--HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHH
Confidence            432221 2334444       48899999999999996665 3  2233333333356889999999532         3


Q ss_pred             HHhhcCeEEEEeCCeE
Q psy11928        134 IRDTECTLWVIENQTI  149 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i  149 (184)
                      +......|..+..|..
T Consensus       291 ~~~~~~pi~~i~~Ge~  306 (328)
T 3e70_C          291 SYVIDAPILFVGVGQG  306 (328)
T ss_dssp             HHHHTCCEEEEECSSS
T ss_pred             HHHHCCCEEEEeCCCC
Confidence            3344556777777754

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.92  E-value=0.0091  Score=50.97  Aligned_cols=59  Identities=19%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCC----------CCCCCHHHHHHHHHHHHhc-------CcEEEEEecCHHHHH
Q psy11928         77 GGQKARVALAELTLNAPDVIILDEP----------TNNLDIESIDALADAINEY-------KGGVIIVSHDERLIR  135 (184)
Q Consensus        77 gG~kqrv~laral~~~p~illlDEP----------t~~LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~  135 (184)
                      +++++|..+.+|....|.+|++||+          +++.|......+.+++...       +..||.+||..+.+.
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld  168 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD  168 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence            5778899999999999999999999          3466666555555555422       457888999987654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.62  E-value=0.00013  Score=53.92  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=21.5

Q ss_pred             cCCChhHHHHHHHHHHHhcCCCEE
Q psy11928         73 KDLSGGQKARVALAELTLNAPDVI   96 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~~p~il   96 (184)
                      ..|||||+||++||||++.+|++.
T Consensus       102 EglSgGq~qri~lARall~~p~i~  125 (171)
T 2f1r_A          102 EGFSKAGKDRIVVVKKPEEVEHFR  125 (171)
T ss_dssp             ESCGGGCCCEEEECSSGGGGGGGC
T ss_pred             CCcCCCCCcEEEEEecccCCCccC
Confidence            459999999999999999999873

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.61  E-value=0.033  Score=44.33  Aligned_cols=52  Identities=17%  Similarity=0.206  Sum_probs=39.6

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCC-CCCCCHHHHHHHHHHHHhc--CcEEEEEe
Q psy11928         77 GGQKARVALAELTLNAPDVIILDEP-TNNLDIESIDALADAINEY--KGGVIIVS  128 (184)
Q Consensus        77 gG~kqrv~laral~~~p~illlDEP-t~~LD~~~~~~l~~~l~~~--~~tiiivs  128 (184)
                      -.+-+|.+++.+...+++++|+||| +.++|......+.+.....  ..+++++.
T Consensus       165 p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~  219 (295)
T 1ls1_A          165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD  219 (295)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence            3455788999988899999999999 9999998888887776543  23444443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.58  E-value=4.7e-05  Score=63.61  Aligned_cols=80  Identities=11%  Similarity=0.214  Sum_probs=60.0

Q ss_pred             cccCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEE-E
Q psy11928         71 KMKDLSGGQKARVALAELTLNAP--DVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLW-V  143 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~-~  143 (184)
                      .+..+|++.            +|  ++.++|||++++|+......++.+...    +.|++  ||+...+..+|+++. +
T Consensus       130 ~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~  195 (392)
T 1ni3_A          130 EIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQY  195 (392)
T ss_dssp             CSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHH
T ss_pred             eeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHH
Confidence            455577764            89  999999999999999998888887665    34543  999999999999998 8


Q ss_pred             EeCC-eEEEecCChhHHHHHHHH
Q psy11928        144 IENQ-TIEEIDGDFDDYRKELLE  165 (184)
Q Consensus       144 l~~g-~i~~~~~~~~~~~~~~~~  165 (184)
                      |++| ++.. .+.+++-..+.+.
T Consensus       196 L~~G~~~~~-~~~~~~~e~e~i~  217 (392)
T 1ni3_A          196 LTETKQPIR-KGDWSNREVEIIN  217 (392)
T ss_dssp             HHTTCSCGG-GSCCCHHHHHHHH
T ss_pred             hccCCceee-cCCCCHHHHHHHH
Confidence            8999 7653 3554433334333

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.55  E-value=0.00044  Score=59.59  Aligned_cols=87  Identities=10%  Similarity=0.079  Sum_probs=55.0

Q ss_pred             HHHhhCCCCcccc--cccccCCChhHHHHH----------HHHHHHhcCCC-EEEeeCCCCCCCHHHHHHHHHHH-----
Q psy11928         56 KQLGTFGLAGHAH--TIKMKDLSGGQKARV----------ALAELTLNAPD-VIILDEPTNNLDIESIDALADAI-----  117 (184)
Q Consensus        56 ~~l~~~~l~~~~~--~~~~~~LSgG~kqrv----------~laral~~~p~-illlDEPt~~LD~~~~~~l~~~l-----  117 (184)
                      +++..+|+.+...  .+....+|+||+|+.          .+++++...|. ++++||+++.++... ..+.+.+     
T Consensus       248 ~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~-~~~~~~l~~Lar  326 (512)
T 2ius_A          248 KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG-KKVEELIARLAQ  326 (512)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh-HHHHHHHHHHHH
Confidence            5677778764322  112346899998753          34556677887 899999998887432 2233332     


Q ss_pred             --HhcCcEEEEEecCHH-------HHHhhcCeEEE
Q psy11928        118 --NEYKGGVIIVSHDER-------LIRDTECTLWV  143 (184)
Q Consensus       118 --~~~~~tiiivsHd~~-------~~~~~~~~i~~  143 (184)
                        +..|.++|++||++.       ...++..||.+
T Consensus       327 ~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          327 KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             HCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             HhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence              234679999999987       44556666654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.44  E-value=5.7e-05  Score=63.61  Aligned_cols=41  Identities=17%  Similarity=0.079  Sum_probs=32.3

Q ss_pred             HHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEe
Q psy11928         53 KARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIIL   98 (184)
Q Consensus        53 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illl   98 (184)
                      .+...+..+|+...   ..+.+|||||+||  |+|+++.+|++..-
T Consensus       275 ~~i~rL~~lgl~~~---~~~~~LSgg~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          275 GAVTRLRDMGIEPF---LISSSLLGVLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             HHHHHHHHHTCCHH---HHHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred             HHHHHHHHcCCcHH---HHHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence            34445677888653   2678999999999  99999999998763

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.27  E-value=0.023  Score=45.31  Aligned_cols=67  Identities=6%  Similarity=0.055  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----C-cEEEEE--ecCHHHHHhhcCeEEEEeCCeEE
Q psy11928         80 KARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----K-GGVIIV--SHDERLIRDTECTLWVIENQTIE  150 (184)
Q Consensus        80 kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~-~tiiiv--sHd~~~~~~~~~~i~~l~~g~i~  150 (184)
                      ..+.++++  +.+|+++|+|  |+|+|+.....+.++.+-.    . .+++++  ||+...+.++++++..+..+.++
T Consensus       172 ~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV  245 (296)
T 2px0_A          172 EFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI  245 (296)
T ss_dssp             HHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred             HHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence            34555554  4899999999  8899987665554433221    1 234444  99999888888876555555554

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.25  E-value=0.00044  Score=55.53  Aligned_cols=83  Identities=8%  Similarity=0.021  Sum_probs=50.4

Q ss_pred             ccCcccCCceeEEe---cCC-----------eEEEEEecCCCC-------CCCccCCHHHHHH-------HhcC-----C
Q psy11928          3 AHCDLQPQQGELKK---NHR-----------LRIGRFDQHSGE-------HLTAEETPAEYLQ-------RLFN-----L   49 (184)
Q Consensus         3 ~~G~~~p~~G~i~~---~~~-----------~~ig~v~q~~~~-------~l~~~~~~~~~~~-------~~~~-----~   49 (184)
                      |+ +..|++|+|..   .++           ..+||++|+|..       .+++ +++...+.       ...+     .
T Consensus       185 l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e  262 (302)
T 2yv5_A          185 LT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNE  262 (302)
T ss_dssp             HH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSC
T ss_pred             HH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCC
Confidence            55 77899999976   321           137999998841       2333 33211111       1111     1


Q ss_pred             CHHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHH
Q psy11928         50 PYEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAE   87 (184)
Q Consensus        50 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lar   87 (184)
                      ....+.++++.++++....+++++.|||..++++.|||
T Consensus       263 ~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          263 PGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             TTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            23468899999999863334589999998888899876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.23  E-value=0.011  Score=47.46  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=33.9

Q ss_pred             HHHHhhCCCCcccccccccCCChhHHHHH---HHHHHHhcCCCEEEeeCCCC
Q psy11928         55 RKQLGTFGLAGHAHTIKMKDLSGGQKARV---ALAELTLNAPDVIILDEPTN  103 (184)
Q Consensus        55 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv---~laral~~~p~illlDEPt~  103 (184)
                      ..+++.+|+..      +...|+|+.+++   ++++++..+|+++|+|||..
T Consensus       152 ~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          152 KIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             HHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             HHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            34555556641      345789999999   89999999999999999975

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.14  E-value=0.034  Score=45.34  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=47.6

Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEee-CCCCCCCHHHHHHHHHHHHh-c-CcEEEEEe--cCHH
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILD-EPTNNLDIESIDALADAINE-Y-KGGVIIVS--HDER  132 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlD-EPt~~LD~~~~~~l~~~l~~-~-~~tiiivs--Hd~~  132 (184)
                      ++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.+ . +..+|+|.  ||+.
T Consensus       228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            56789999998776 55555677789999 99999999987777766654 3 57788888  8864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.67  E-value=0.0071  Score=49.53  Aligned_cols=29  Identities=28%  Similarity=0.412  Sum_probs=22.6

Q ss_pred             CCChhHHHHHHHHHHH---hc--CCCEEEeeCCC
Q psy11928         74 DLSGGQKARVALAELT---LN--APDVIILDEPT  102 (184)
Q Consensus        74 ~LSgG~kqrv~laral---~~--~p~illlDEPt  102 (184)
                      .+|+|++||..++++|   ..  +++++++|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            5899999999999999   66  89999999997

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.66  E-value=0.052  Score=44.23  Aligned_cols=54  Identities=19%  Similarity=0.185  Sum_probs=39.5

Q ss_pred             cCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH-HHHHHHhc-CcEEEEEe
Q psy11928         73 KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDA-LADAINEY-KGGVIIVS  128 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~-l~~~l~~~-~~tiiivs  128 (184)
                      +.||.++.+|+..|...+.++++++.|+|...  +..... +..+..+. +..+|+|-
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVID  163 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFID  163 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence            67999999999999999999999999998654  433333 33333445 55677664

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=93.90  E-value=0.00033  Score=60.31  Aligned_cols=72  Identities=10%  Similarity=0.011  Sum_probs=49.3

Q ss_pred             HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-HhcCcEEEEEecCHHHH--HhhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928         87 ELTLNAPDVIILDEPTNNLDIESIDALADAI-NEYKGGVIIVSHDERLI--RDTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus        87 ral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~~~tiiivsHd~~~~--~~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                      |||..+ +|||+ ||++.+||. +..+...| +.++.++.++||+++.+  ..+++++..+..+.+.....++++..+
T Consensus        28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~~  102 (514)
T 1jcn_A           28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQAN  102 (514)
T ss_dssp             SCCCGG-GEEEC-CCCCCSCGG-GCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHH
T ss_pred             cccccC-cEEec-cCccCCCcc-eeEEEeeccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHHH
Confidence            789999 99999 999999994 43332222 34456899999999887  566777766655555443445555443

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=93.21  E-value=0.006  Score=52.36  Aligned_cols=115  Identities=16%  Similarity=0.089  Sum_probs=62.7

Q ss_pred             cccCcccCCceeEEecC-----------------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCC
Q psy11928          2 YAHCDLQPQQGELKKNH-----------------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFG   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~   62 (184)
                      .|+|+++|++|+|.+..                 +..++|++|...  +....++.+.+...  .+.+    .-+++..|
T Consensus       312 ~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p~~tV~e~l~~a~~~~~D----vVLIDTaG  385 (503)
T 2yhs_A          312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADSASVIFDAIQAAKARNID----VLIADTAG  385 (503)
T ss_dssp             HHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCHHHHHHHHHHHHHHTTCS----EEEECCCC
T ss_pred             HHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCHHHHHHHHHHHHHhcCCC----EEEEeCCC
Confidence            46788889999997641                 224789998753  22333333333211  1110    00234444


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHh-cCC-CEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTL-NAP-DVIILDEPTNNLDIESIDALADAINEYKGGVIIVSH  129 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~-~~p-~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsH  129 (184)
                      ....... .+.+|    +|++.+++++. ..| .++|...|+.|.|..  ..+..+-...+.|.+++||
T Consensus       386 rl~~~~~-lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK  447 (503)
T 2yhs_A          386 RLQNKSH-LMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK  447 (503)
T ss_dssp             SCCCHHH-HHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred             ccchhhh-HHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence            4322111 23333    47888888764 446 456566688885543  2233333346789999999

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=92.80  E-value=0.057  Score=39.54  Aligned_cols=37  Identities=16%  Similarity=0.168  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928         81 ARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE  119 (184)
Q Consensus        81 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  119 (184)
                      +.+.+|++++.+|+++++|  ||++|..++..+.+.+.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            4477899999999999999  999999999999888754

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=92.26  E-value=0.16  Score=38.18  Aligned_cols=65  Identities=25%  Similarity=0.240  Sum_probs=45.4

Q ss_pred             HHHHHHHHh--cCCCEEEeeCCCC--CCCHHHHHHHHHHHHhc--CcEEEEEecC-HHHHHhhcCeEEEEeC
Q psy11928         82 RVALAELTL--NAPDVIILDEPTN--NLDIESIDALADAINEY--KGGVIIVSHD-ERLIRDTECTLWVIEN  146 (184)
Q Consensus        82 rv~laral~--~~p~illlDEPt~--~LD~~~~~~l~~~l~~~--~~tiiivsHd-~~~~~~~~~~i~~l~~  146 (184)
                      ....++..+  .+.|++||||.+.  .++......+.+.+.+.  ...||+++.. ...+...+|-|-.|..
T Consensus       108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~  179 (196)
T 1g5t_A          108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP  179 (196)
T ss_dssp             HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence            344455555  6689999999976  33444556688888754  3588888887 5666678998887754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=91.97  E-value=0.077  Score=44.57  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             cCCCEEEeeCCCCCCCH-HHHHHHHHHHHh---cCcEEEEEecCH
Q psy11928         91 NAPDVIILDEPTNNLDI-ESIDALADAINE---YKGGVIIVSHDE  131 (184)
Q Consensus        91 ~~p~illlDEPt~~LD~-~~~~~l~~~l~~---~~~tiiivsHd~  131 (184)
                      .+|++|++||+..-.+. .....+...+..   .+..||++||+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~  237 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE  237 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            38999999999877654 566677777654   367899999973

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=91.84  E-value=0.00015  Score=62.62  Aligned_cols=56  Identities=13%  Similarity=0.061  Sum_probs=42.2

Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE--EecCHHHHHhhcC
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVII--VSHDERLIRDTEC  139 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii--vsHd~~~~~~~~~  139 (184)
                      ...+|+||+||.+++.          + | |+|||+.....+.+.+.++   +.|+++  +||+++++...|.
T Consensus       398 ~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          398 TMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             EEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred             EEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence            4568999998876641          1 7 9999998776666655443   568875  9999999988775

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=90.92  E-value=0.38  Score=38.69  Aligned_cols=47  Identities=15%  Similarity=0.341  Sum_probs=36.3

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHh------cCcEEEEEecCHHHHHhhc
Q psy11928         91 NAPDVIILDEPTNNLDIESIDALADAINE------YKGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        91 ~~p~illlDEPt~~LD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~  138 (184)
                      .+|.++++||+... |......+...+.+      .+.++|++||+.+....+.
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~  176 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD  176 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence            45889999999876 88888888888753      3568999999987655443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=90.91  E-value=0.08  Score=42.92  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             cCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHHHHHhc
Q psy11928         73 KDLSGGQKARVALAELTLN------APDVIILDEPTNNLDIESIDALADAINEY  120 (184)
Q Consensus        73 ~~LSgG~kqrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~  120 (184)
                      ..+|+|++|++..+++++.      .|++++    +|++|......+++.|.+.
T Consensus       209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence            5689999999999999987      688876    9999999999999988763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=90.81  E-value=0.0019  Score=48.62  Aligned_cols=58  Identities=10%  Similarity=0.039  Sum_probs=42.4

Q ss_pred             ccCCChhHHHHHHHH-HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH-HHhhcCe
Q psy11928         72 MKDLSGGQKARVALA-ELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL-IRDTECT  140 (184)
Q Consensus        72 ~~~LSgG~kqrv~la-ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~-~~~~~~~  140 (184)
                      ...+|+|++|+++++ ++++.++.++++|||..           ..+...-..+++++++.+. +.+.+.|
T Consensus       109 ~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~~~~~~~~R~~~R  168 (208)
T 3c8u_A          109 ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEVPMADLEARLVQR  168 (208)
T ss_dssp             TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred             cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence            456799999999998 88888888888888841           1123344688999999887 4555554

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=90.23  E-value=0.008  Score=48.02  Aligned_cols=75  Identities=12%  Similarity=-0.054  Sum_probs=38.4

Q ss_pred             cccCcccCCceeEEe---cCC-----------eEEEEEecCCCC-C-------------CCccCCHHHHHHH--h-c-CC
Q psy11928          2 YAHCDLQPQQGELKK---NHR-----------LRIGRFDQHSGE-H-------------LTAEETPAEYLQR--L-F-NL   49 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~---~~~-----------~~ig~v~q~~~~-~-------------l~~~~~~~~~~~~--~-~-~~   49 (184)
                      .|+|+..|++|+|..   .++           ..+|+++|.|.. .             +.+..++ +++..  . . ..
T Consensus       188 ~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~~~e  266 (301)
T 1u0l_A          188 AINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDCNHVDE  266 (301)
T ss_dssp             HHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTCCSSSC
T ss_pred             HhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCCcCCCC
Confidence            578999999999986   221           147999998741 0             1111121 11110  0 0 11


Q ss_pred             CHHHHHHHHhhCCCCcccccccccCCCh
Q psy11928         50 PYEKARKQLGTFGLAGHAHTIKMKDLSG   77 (184)
Q Consensus        50 ~~~~~~~~l~~~~l~~~~~~~~~~~LSg   77 (184)
                      ...++.++++.+||+....+++++.||+
T Consensus       267 ~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          267 PECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             SSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            2346888999999963333457888886

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=90.14  E-value=0.0022  Score=50.72  Aligned_cols=48  Identities=17%  Similarity=0.176  Sum_probs=39.2

Q ss_pred             ccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCC------------CCCHHHHHHHHHHHHh
Q psy11928         70 IKMKDLSGGQKARVALAELTLNAPDVIILDEPTN------------NLDIESIDALADAINE  119 (184)
Q Consensus        70 ~~~~~LSgG~kqrv~laral~~~p~illlDEPt~------------~LD~~~~~~l~~~l~~  119 (184)
                      +.+.+|||||+||+.+++|+.++|++|  |||+.            --|...+..+++.+.+
T Consensus       133 ~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~  192 (274)
T 2x8a_A          133 QLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTITK  192 (274)
T ss_dssp             HHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred             HHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence            467899999999999999999999975  99864            3467788888776643

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=89.41  E-value=0.89  Score=35.30  Aligned_cols=57  Identities=16%  Similarity=0.187  Sum_probs=39.6

Q ss_pred             ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH----------HHHHHHHHHHHhc-------CcEEEEEecCHH
Q psy11928         76 SGGQKARVALAELTLNAPDVIILDEPTNNLDI----------ESIDALADAINEY-------KGGVIIVSHDER  132 (184)
Q Consensus        76 SgG~kqrv~laral~~~p~illlDEPt~~LD~----------~~~~~l~~~l~~~-------~~tiiivsHd~~  132 (184)
                      +++++.+..+..+...+|.++++||+.+-++.          .....+...+...       +..||.+|++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~  170 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ  170 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence            46778888888888899999999999776543          2233455555443       135777888754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.35  E-value=0.17  Score=42.59  Aligned_cols=55  Identities=7%  Similarity=0.056  Sum_probs=41.9

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCH
Q psy11928         74 DLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDE  131 (184)
Q Consensus        74 ~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~  131 (184)
                      .|+-..   +.++++|..+++++++|+|+..|.+.....+.+.+.+    .|.+|+.+|.|-
T Consensus       161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence            455544   7999999999999999999999999888877777754    367888888653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=88.13  E-value=0.27  Score=35.88  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928         83 VALAELTLNAPDVIILDEPTNNLDIESIDALADAINE  119 (184)
Q Consensus        83 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  119 (184)
                      ...|++++.+|++.++|  ||++|......+.+.+.+
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~  164 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT  164 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence            45689999999999999  999999999988887754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=88.10  E-value=0.26  Score=40.36  Aligned_cols=60  Identities=22%  Similarity=0.327  Sum_probs=43.1

Q ss_pred             HHHHhhCCCCccc----ccccccCCChhHHHHHHHH----HHH-hcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928         55 RKQLGTFGLAGHA----HTIKMKDLSGGQKARVALA----ELT-LNAPDVIILDEPTNNLDIESIDALADAINE  119 (184)
Q Consensus        55 ~~~l~~~~l~~~~----~~~~~~~LSgG~kqrv~la----ral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~  119 (184)
                      .++++.+++....    .+ ++..+|+|+++++.++    +++ ..+|++    +|+|++|......+.+.|.+
T Consensus       282 ~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~  350 (364)
T 2qtf_A          282 FEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ  350 (364)
T ss_dssp             HHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence            4566666654322    34 5788899988888877    555 434454    89999999999998888764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=87.98  E-value=0.13  Score=44.80  Aligned_cols=47  Identities=21%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE  119 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  119 (184)
                      .+.+|+|++|++..++....++.+|++||... |++.....|.+.|.+
T Consensus       181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            36799999999999999999999999999987 899999999999974

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=87.55  E-value=0.54  Score=37.47  Aligned_cols=53  Identities=9%  Similarity=0.228  Sum_probs=38.6

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH-HHHHHHHhcCcE--EEEEec
Q psy11928         75 LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID-ALADAINEYKGG--VIIVSH  129 (184)
Q Consensus        75 LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~-~l~~~l~~~~~t--iiivsH  129 (184)
                      ||.++++|+..|...+.++++++.|+|..  ++.... .+.++..+.+..  +|+|-|
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~--~~~~i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQ--SVNYIWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCC--BHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCC--CHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            99999999999999999999999999864  344332 333334445555  777765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=87.45  E-value=0.078  Score=39.22  Aligned_cols=69  Identities=16%  Similarity=0.054  Sum_probs=45.5

Q ss_pred             ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc-CcEEEEEecCHHHH--HhhcCeEEEEeC
Q psy11928         76 SGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY-KGGVIIVSHDERLI--RDTECTLWVIEN  146 (184)
Q Consensus        76 SgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~--~~~~~~i~~l~~  146 (184)
                      |.|+.+|..++..+..+|+.+.+.  .+.++|..+..+.+.+... +.++|+.+|.+.+.  ...|+.+++++-
T Consensus        61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A           61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred             cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence            678889999988888877654333  3456677777777767553 45888889987665  567888888754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=87.32  E-value=0.0023  Score=47.91  Aligned_cols=55  Identities=11%  Similarity=0.127  Sum_probs=36.7

Q ss_pred             HHH-HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         85 LAE-LTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        85 lar-al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                      .++ +++.+|++++|||||+++|..+.+.+.+.+.+...- +.++|..    ..+|.+++.
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivn  171 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIIN  171 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEEC
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEEC
Confidence            455 678888899999999999998888887776543211 2334511    356776543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=84.64  E-value=0.013  Score=47.30  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=41.1

Q ss_pred             HHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCHHH
Q psy11928         54 ARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERL  133 (184)
Q Consensus        54 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~  133 (184)
                      +...+..+++.. .. .++..||+|++||+.++                .+||+.+...+.+++++.... .-++|+.+.
T Consensus       144 i~~~l~~~~li~-at-~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~  204 (334)
T 1in4_A          144 IRIDIQPFTLVG-AT-TRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAA  204 (334)
T ss_dssp             -----CCCEEEE-EE-SCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHH
T ss_pred             ccccCCCeEEEE-ec-CCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHH
Confidence            344556666643 33 36899999999998654                667777777777777543110 113688777


Q ss_pred             HHhhcCe
Q psy11928        134 IRDTECT  140 (184)
Q Consensus       134 ~~~~~~~  140 (184)
                      +..++++
T Consensus       205 ~~~ia~~  211 (334)
T 1in4_A          205 AEMIAKR  211 (334)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            7766653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=83.85  E-value=0.38  Score=38.46  Aligned_cols=45  Identities=22%  Similarity=0.212  Sum_probs=29.1

Q ss_pred             CCCEEEeeCCCCCCC---HHHHHHHHHHHHh---cCcEEEEEecCHHHHHh
Q psy11928         92 APDVIILDEPTNNLD---IESIDALADAINE---YKGGVIIVSHDERLIRD  136 (184)
Q Consensus        92 ~p~illlDEPt~~LD---~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~  136 (184)
                      .|.++++||+.+..+   ......+.+.+..   .+.++|++||+......
T Consensus       128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~  178 (386)
T 2qby_A          128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL  178 (386)
T ss_dssp             SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred             CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence            388999999987652   3344455555532   24689999998865433

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=81.88  E-value=1.9  Score=34.27  Aligned_cols=52  Identities=17%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             HHHHHHHHHh---cCCCEEEeeCCCCCCCH--------HHH----HHH----HHHHHhcCcEEEEEecCHH
Q psy11928         81 ARVALAELTL---NAPDVIILDEPTNNLDI--------ESI----DAL----ADAINEYKGGVIIVSHDER  132 (184)
Q Consensus        81 qrv~laral~---~~p~illlDEPt~~LD~--------~~~----~~l----~~~l~~~~~tiiivsHd~~  132 (184)
                      +.+..++.++   .+|+++++|+.++-...        ..+    ..+    ..+.++++.+||+++|-..
T Consensus       189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~  259 (324)
T 2z43_A          189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA  259 (324)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence            4566666666   67999999999976532        111    222    2233456889999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-14
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	2e-14
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	5e-14
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-13
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-13
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-13
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-13
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-12
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-12
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-12
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	5e-12
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	6e-12
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-11
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-11
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-11
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-10
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	9e-10
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-09
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-09
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-07
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	7e-07
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	5e-06
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-05
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	2e-05

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)

Query: 32  HLTAEETPAEYLQRLFNLPYEKARKQ----LGTFGLAGHAHTIKMKDLSGGQKARVALAE 87
           H+T  E  A  L ++   P ++  K+         +    +      LSGGQ+ RVA+A 
Sbjct: 92  HMTVYENIAFPL-KIKKFPKDEIDKRVRWAAELLQIEELLNR-YPAQLSGGQRQRVAVAR 149

Query: 88  LTLNAPDVIILDEPTNNLDIESIDALADAI----NEYKGGVIIVSHDERLIRDTECTLWV 143
             +  PDV+++DEP +NLD +   A+   I     + K   I V+HD+         + V
Sbjct: 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 209

Query: 144 IENQTIEEID 153
           +    + +I 
Sbjct: 210 MNRGQLLQIG 219

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 67.2 bits (164), Expect = 2e-14
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   L    ++ILDE T+ LD ES  A+  A++E +     ++++H   
Sbjct: 153 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 212

Query: 133 LIRDTECTLWVIENQTIEEID 153
            I   +  + V+E+  I E  
Sbjct: 213 TIEQADEIV-VVEDGIIVERG 232

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 65.6 bits (160), Expect = 5e-14
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 13  ELKKNHRLRIGRFDQHSG--EHLTAEETPAEYL--QRLFNLPYEKARKQL----GTFGLA 64
           EL K  R +IG   Q       LTA E     L  +    +  E+ RK+         L 
Sbjct: 76  ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135

Query: 65  GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEY 120
                 K   LSGGQ+ RVA+A    N P +I+ D+PT  LD ++    +  L     E 
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195

Query: 121 KGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
              V++V+HD  + R  E  +  +++  +E  +
Sbjct: 196 GKTVVVVTHDINVARFGERII-YLKDGEVEREE 227

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 64.8 bits (158), Expect = 1e-13
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQK R+++A + LN P ++ILDE T+ LD+ES   + +A++        +IV+H   
Sbjct: 155 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 214

Query: 133 LIRDTECTLWVIENQTIEEID 153
            I   +  + VIEN  I E  
Sbjct: 215 TITHADKIV-VIENGHIVETG 234

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 64.6 bits (157), Expect = 1e-13
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 12/132 (9%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           EKA K L    L+      K  +LSGGQ   V +    +  P +I++DEP   +      
Sbjct: 129 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 187

Query: 112 ALADAINEYKG---GVIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALG 168
            + + + E K      +I+ H   ++ +    L+V+ N  I   +G  ++  K +L    
Sbjct: 188 DIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEEEIKNVL---- 242

Query: 169 EVVNNPSIVANM 180
              ++P +V   
Sbjct: 243 ---SDPKVVEIY 251

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 9/157 (5%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LG 59
            L+       +  R R+    QH     H+T  E   E   ++  L    AR++    L 
Sbjct: 75  QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 134

Query: 60  TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE 119
             G+   A       LSGGQ+ RV++A      PDV++ DEPT+ LD E +  +   + +
Sbjct: 135 KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 194

Query: 120 YKG---GVIIVSHDERLIRDTECTLWVIENQTIEEID 153
                  +++V+H+    R     +  +    IEE  
Sbjct: 195 LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 63.7 bits (155), Expect = 2e-13
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 6   DLQPQQGELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQ----LG 59
           +L           R +IG   QH       T     A  L  L N P ++ +++    L 
Sbjct: 68  ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLS 126

Query: 60  TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADA 116
             GL     +    +LSGGQK RVA+A    + P V++ DE T+ LD     SI  L   
Sbjct: 127 LVGLGDKHDS-YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185

Query: 117 INEYKG-GVIIVSHDERLIRDTECTLWVIENQTIEEID 153
           IN   G  +++++H+  +++     + VI N  + E D
Sbjct: 186 INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 223

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 12  GELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKAR--KQLGTFGLAGHA 67
           G      + +I    +       ++ E+   + +  L+ +   K      L +  +    
Sbjct: 62  GVPITKVKGKIFFLPEEIIVPRKISVEDY-LKAVASLYGVKVNKNEIMDALESVEVLDLK 120

Query: 68  HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVI 125
              K+ +LS G   RV LA   L   ++ +LD+P   +D +S   +  +I E   + G++
Sbjct: 121 K--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178

Query: 126 IVSHDERL 133
           I+S  E L
Sbjct: 179 IISSREEL 186

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.7 bits (147), Expect = 4e-12
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 52  EKARKQLGTFGLAGHAHTI---KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIE 108
           +  + Q      A   +T+       LSGGQ+AR++LA       D+ +LD P   LD+ 
Sbjct: 133 KACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192

Query: 109 SIDALADAINEYKGG---VIIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLE 165
           + + + ++           I+V+     +R  +  L ++   +     G F     EL  
Sbjct: 193 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL-ILHQGSSYFY-GTFS----ELQS 246

Query: 166 ALGEVV 171
              +  
Sbjct: 247 LRPDFS 252

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 60.3 bits (146), Expect = 5e-12
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           +SGGQ+ R+A+A   L  P +++LDE T +LD ES   +  A++    G   ++++H   
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199

Query: 133 LIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALGEVVNNPSIVANMAVEQ 184
            I D +     IE   I    G  +           E+V    + A    EQ
Sbjct: 200 TIVDADKIY-FIEKGQITG-SGKHN-----------ELVATHPLYAKYVSEQ 238

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.0 bits (145), Expect = 5e-12
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 17/172 (9%)

Query: 14  LKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY----EKARKQLGTFGLAGHA 67
                R  I    + +G   ++   E    ++   +        E   +     GL    
Sbjct: 69  EPHEVRKLISYLPEEAGAYRNMQGIEYL-RFVAGFYASSSSEIEEMVERATEIAGLGEKI 127

Query: 68  HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK---GGV 124
              ++   S G   ++ +A   +  P + ILDEPT+ LD+ +   +   + +       +
Sbjct: 128 KD-RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 186

Query: 125 IIVSHDERLIRDTECTLWVIENQTIEEIDGDFDDYR-----KELLEALGEVV 171
           ++ SH+   +      + +I N TI E  G  ++ +     + + E   EVV
Sbjct: 187 LVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELKERYKAQNIEEVFEEVV 237

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 75  LSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYKGG--VIIVSHDER 132
           LSGGQ+ R+A+A   +N P ++I DE T+ LD ES   +   +++   G  VII++H   
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199

Query: 133 LIRDTECTLWVIENQTIEEID 153
            +++ +  + V+E   I E  
Sbjct: 200 TVKNADRII-VMEKGKIVEQG 219

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           ++ R+     GL    +    ++LSGGQ+ RVAL    +  P V ++DEP +NLD +   
Sbjct: 118 QRVREVAELLGLTELLNRK-PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176

Query: 112 ALADAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
            +   + +         I V+HD+         + V+    ++++ 
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 62  GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEYK 121
            L           LSGG++  +A+    ++ P ++++DEP+  L    +  + + I +  
Sbjct: 128 RLKERLKQ-LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186

Query: 122 G---GVIIVSHDERLIRDTECTLWVIENQTIEEID 153
                +++V  +           +V+E   I    
Sbjct: 187 QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEG 221

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (129), Expect = 9e-10
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 13/160 (8%)

Query: 19  RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDLSGG 78
            L      Q               L +      E      G   L           LSGG
Sbjct: 71  ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-STNQLSGG 129

Query: 79  QKARVALAELTLN-------APDVIILDEPTNNLDIES---IDALADAINEYKGGVIIVS 128
           +  RV LA + L        A  +++LDEP N+LD+     +D +  A+ +    +++ S
Sbjct: 130 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSS 189

Query: 129 HDERLIRDTECTLWVIENQTIEEIDGDFDD-YRKELLEAL 167
           HD           W+++   +    G  ++      L   
Sbjct: 190 HDLNHTLRHAHRAWLLKGGKMLA-SGRREEVLTPPNLAQA 228

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 73  KDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIES----IDALADAINEYKGGVIIVS 128
             LSGGQ+  VALA   +  P V+ILD+ T+ LD  S       L ++   Y   V++++
Sbjct: 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 209

Query: 129 HDERLIRDTECTLWVIENQTIEEIDGDFDDYRKELLEALG 168
               L+   +  L  +E   I E  G       +L+E  G
Sbjct: 210 QHLSLVEQADHIL-FLEGGAIRE-GGTHQ----QLMEKKG 243

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.3 bits (125), Expect = 3e-09
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 52  EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESID 111
           ++  +      LA      K K LSGGQ+ RVA+    +  P V +LDEP +NLD     
Sbjct: 109 QRVNQVAEVLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 167

Query: 112 ALADAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
            +   I+         +I V+HD+         + V++   + ++ 
Sbjct: 168 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 213

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 1   MYAHCDLQPQQGELKKNHRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPY---EKAR 55
            +    +      +      +IG   Q      +LTA E  A  L  +        ++  
Sbjct: 63  YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122

Query: 56  KQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALAD 115
           +      +    +    ++LSG Q+ RVALA   +  P +++LDEP +NLD    D+   
Sbjct: 123 EVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181

Query: 116 AINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
            + E        +++VSHD   I      + V+    + ++ 
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 45.4 bits (107), Expect = 7e-07
 Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 18  HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKMKDL 75
            +  I    Q+     H+  ++     ++       ++         +           L
Sbjct: 70  EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-NPLTL 128

Query: 76  SGGQKARVALAELTLNAPDVIILDEPTNNLD---IESIDALADAINEYKG-GVIIVSHDE 131
           SGG++ RVALA   +  P +++LDEP + LD    E+   +   +++     V+ ++HD+
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188

Query: 132 RLIRDTECTLWVIENQTIEEID 153
              R     + V+ +  + ++ 
Sbjct: 189 TEARIMADRIAVVMDGKLIQVG 210

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 17/163 (10%)

Query: 7   LQPQQGELKKN---------HRLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLPYE-KA 54
           ++P +GE++ N          R  IG   Q      HL+     A  L+ +  +  + + 
Sbjct: 48  VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRV 107

Query: 55  RKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALA 114
           R+     G+A      K   LSGG++ RVALA   +  P +++LDEP + +D+++   L 
Sbjct: 108 REMAEKLGIAHLLDR-KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166

Query: 115 DAINE----YKGGVIIVSHDERLIRDTECTLWVIENQTIEEID 153
           + +      +   ++ V+HD          + V+ N  I E  
Sbjct: 167 EELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 19/160 (11%), Positives = 47/160 (29%), Gaps = 12/160 (7%)

Query: 19  RLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGL--------AGHAHTI 70
           +  + R  + +    T E    E  +R          K+                +   +
Sbjct: 18  KKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV 77

Query: 71  KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDI--ESIDALADAINEYKGGVIIVS 128
           +  +         A  E   +   VII+DE         +  D +   +++    V+   
Sbjct: 78  QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI 137

Query: 129 HDERLIRDTECTLWVIENQTIEEID-GDFDDYRKELLEAL 167
               +    +  +  +    + E+   + D   +++L  L
Sbjct: 138 PIRDVHPLVK-EIRRLPGAVLIELTPENRDVILEDILSLL 176

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 21/129 (16%)

Query: 13  ELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLAGHAHTIKM 72
           EL KN    +     ++   +  E+ P     +    P  K                  M
Sbjct: 285 ELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLK--------------RFKDM 330

Query: 73  KDLSGGQKARVALAEL----TLNAPDVIILDEPTNNLDIESIDALADAINEYKGG---VI 125
           + LSGG+K   ALA L    +       +LDE    LDI ++  +A  I  ++      I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390

Query: 126 IVSHDERLI 134
           ++S    + 
Sbjct: 391 VISLKNTMF 399

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.98
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.96
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.74
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.52
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.2
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.94
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.56
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.01
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.75
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.24

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.2e-41  Score=264.38  Aligned_cols=154  Identities=19%  Similarity=0.240  Sum_probs=130.5

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHH---HhcC-CCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFN-LPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~~~   68 (184)
                      .|+|+.+|++|+|.+++         +++|||+||++.  +.+..|+.+++.   ...+ ...+++.++++.+++.+..+
T Consensus        45 ~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~--l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  122 (229)
T d3d31a2          45 LIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS--LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD  122 (229)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCC--CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT
T ss_pred             HHhcCcCCCCCEEEEccEeccccchhHhcceeeccccc--cCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHh
Confidence            57999999999999764         346999999974  555666666543   2222 34577899999999987765


Q ss_pred             cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEEEE
Q psy11928         69 TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLWVI  144 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~~l  144 (184)
                       +++.+|||||||||+|||||+.+|++|||||||+|||+.++.++++++++    .+.|||+||||++++..+|||+++|
T Consensus       123 -~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm  201 (229)
T d3d31a2         123 -RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV  201 (229)
T ss_dssp             -SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             -CChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEE
Confidence             58999999999999999999999999999999999999999999988854    4789999999999999999999999


Q ss_pred             eCCeEEEecCChhHH
Q psy11928        145 ENQTIEEIDGDFDDY  159 (184)
Q Consensus       145 ~~g~i~~~~~~~~~~  159 (184)
                      ++|++++ .|+++++
T Consensus       202 ~~G~iv~-~g~~~el  215 (229)
T d3d31a2         202 MDGKLIQ-VGKPEEI  215 (229)
T ss_dssp             SSSCEEE-EECHHHH
T ss_pred             ECCEEEE-EcCHHHH
Confidence            9999986 6666554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.6e-41  Score=263.96  Aligned_cols=154  Identities=23%  Similarity=0.245  Sum_probs=126.1

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhhCCCCc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGTFGLAG   65 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~   65 (184)
                      .|+|+++|++|+|.+++         +++|||+||++.  +.+..|+.+++..   ..+.++    +++.++++.+|+++
T Consensus        51 ~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  128 (239)
T d1v43a3          51 MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE  128 (239)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHcCCCCCCCEEEEcceecccCCcccceEEEEeechh--hcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence            57899999999998764         346999999974  5666777776643   223343    45678999999987


Q ss_pred             ccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeE
Q psy11928         66 HAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        66 ~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i  141 (184)
                      ..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++++.+    .+.|||+||||++++..+|||+
T Consensus       129 ~~~-~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri  207 (239)
T d1v43a3         129 LLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI  207 (239)
T ss_dssp             GTT-SCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE
T ss_pred             hhc-CChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEE
Confidence            765 58999999999999999999999999999999999999999999988865    3789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHH
Q psy11928        142 WVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~  159 (184)
                      ++|++|++++ .|+++++
T Consensus       208 ~vm~~G~iv~-~G~~~el  224 (239)
T d1v43a3         208 AVMNRGQLLQ-IGSPTEV  224 (239)
T ss_dssp             EEEETTEEEE-EECHHHH
T ss_pred             EEEECCEEEE-EcCHHHH
Confidence            9999999986 6666554

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5e-41  Score=262.62  Aligned_cols=154  Identities=24%  Similarity=0.264  Sum_probs=130.2

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCCH----HHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLPY----EKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~l~~   60 (184)
                      .|+|+++|++|+|.+++              +++|||+||++.  +.+..|+.+++..   ..+.++    +++.++++.
T Consensus        50 ~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~--L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~  127 (242)
T d1oxxk2          50 IIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI  127 (242)
T ss_dssp             HHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHH
T ss_pred             HHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccc--ccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhh
Confidence            57899999999998653              347999999974  5666677776653   233433    457889999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~  136 (184)
                      +|+++..+ ++|++|||||||||+|||||+.+|++|||||||++||+.++..+++.|++    .+.|||+||||++++..
T Consensus       128 ~gL~~~~~-~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~  206 (242)
T d1oxxk2         128 LDIHHVLN-HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA  206 (242)
T ss_dssp             TTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred             cChHhhhh-CChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHH
Confidence            99987665 68999999999999999999999999999999999999999999988864    37899999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChhHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      +|||+++|++|++++ .|+++++
T Consensus       207 ~~dri~vm~~G~iv~-~g~~~el  228 (242)
T d1oxxk2         207 IADRVGVLVKGKLVQ-VGKPEDL  228 (242)
T ss_dssp             HCSEEEEEETTEEEE-EECHHHH
T ss_pred             hCCEEEEEECCEEEE-EcCHHHH
Confidence            999999999999986 5665544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=3.2e-41  Score=263.72  Aligned_cols=154  Identities=23%  Similarity=0.319  Sum_probs=128.9

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCH----HHHHHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPY----EKARKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~----~~~~~~l~   59 (184)
                      .|+|+++|++|+|.+++               +++|||+||++.  +.+..|+.+++.   ..++.+.    +++.++++
T Consensus        48 ~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~--L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~  125 (240)
T d1g2912          48 MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE  125 (240)
T ss_dssp             HHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchh--hcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHH
Confidence            57899999999998653               356999999974  555666665543   2334443    45788999


Q ss_pred             hCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHH
Q psy11928         60 TFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIR  135 (184)
Q Consensus        60 ~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~  135 (184)
                      .+++++..+ ++|++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|.+    .+.|||+||||++++.
T Consensus       126 ~~~l~~~~~-~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~  204 (240)
T d1g2912         126 LLGLTELLN-RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM  204 (240)
T ss_dssp             HHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred             HcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHH
Confidence            999987665 58999999999999999999999999999999999999999999988854    4889999999999999


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      .+|||+++|++|++++ .|+++++
T Consensus       205 ~~~drv~vm~~G~iv~-~G~~~el  227 (240)
T d1g2912         205 TMGDRIAVMNRGVLQQ-VGSPDEV  227 (240)
T ss_dssp             HHCSEEEEEETTEEEE-EECHHHH
T ss_pred             HhCCEEEEEECCEEEE-EcCHHHH
Confidence            9999999999999986 4555443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-41  Score=264.36  Aligned_cols=155  Identities=23%  Similarity=0.238  Sum_probs=101.8

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCC--CCCCccCCHHHHHHHhcCCC----HHHHHHHHhhCCCCcc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSG--EHLTAEETPAEYLQRLFNLP----YEKARKQLGTFGLAGH   66 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~   66 (184)
                      .|+|+++|++|+|.+++         +++|||+||++.  +.+++.+|+... ....+.+    .+++.++++.+++.+.
T Consensus        45 ~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~-~~~~~~~~~~~~~~v~~~l~~~~l~~~  123 (232)
T d2awna2          45 MIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG-LKLAGAKKEVINQRVNQVAEVLQLAHL  123 (232)
T ss_dssp             HHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC----------------------CHHHHHHHHHHHHC-----
T ss_pred             HHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhCCChhh
Confidence            57899999999998764         456999999985  445555554222 2222222    2568889999999876


Q ss_pred             cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEE
Q psy11928         67 AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLW  142 (184)
Q Consensus        67 ~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~  142 (184)
                      .+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.+.+    .+.|||+||||++++..+|||++
T Consensus       124 ~~-~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~  202 (232)
T d2awna2         124 LD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV  202 (232)
T ss_dssp             -----------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEE
T ss_pred             hh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            65 58999999999999999999999999999999999999999999888754    47899999999999999999999


Q ss_pred             EEeCCeEEEecCChhHH
Q psy11928        143 VIENQTIEEIDGDFDDY  159 (184)
Q Consensus       143 ~l~~g~i~~~~~~~~~~  159 (184)
                      +|++|++++ .|+++++
T Consensus       203 vm~~G~iv~-~G~~~el  218 (232)
T d2awna2         203 VLDAGRVAQ-VGKPLEL  218 (232)
T ss_dssp             EEETTEEEE-EECHHHH
T ss_pred             EEECCEEEE-EeCHHHH
Confidence            999999986 5666554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-41  Score=263.79  Aligned_cols=152  Identities=24%  Similarity=0.341  Sum_probs=127.7

Q ss_pred             cccCcccCCceeEEecC--------------CeEEEEEecCCCCCCCccCCHHHHHHH---hcCCC----HHHHHHHHhh
Q psy11928          2 YAHCDLQPQQGELKKNH--------------RLRIGRFDQHSGEHLTAEETPAEYLQR---LFNLP----YEKARKQLGT   60 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~l~~   60 (184)
                      +|+|+.+|++|+|.+++              +++||||||++.  +.+..|+.+++..   ..+.+    ++++.++++.
T Consensus        50 ~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~--l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~  127 (240)
T d3dhwc1          50 CVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL  127 (240)
T ss_dssp             HHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC--CCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHH
T ss_pred             HHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            58999999999998764              246999999974  5556666665432   22332    2567899999


Q ss_pred             CCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHh
Q psy11928         61 FGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRD  136 (184)
Q Consensus        61 ~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~  136 (184)
                      +|+++..+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|++    .+.|||+||||++++..
T Consensus       128 vgL~~~~~-~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~  206 (240)
T d3dhwc1         128 VGLGDKHD-SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR  206 (240)
T ss_dssp             HSTTTTTS-SCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHH
T ss_pred             cCCchhhh-CChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHH
Confidence            99987765 58999999999999999999999999999999999999999999998864    37899999999999999


Q ss_pred             hcCeEEEEeCCeEEEecCChh
Q psy11928        137 TECTLWVIENQTIEEIDGDFD  157 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~  157 (184)
                      +|||+++|++|++++ .|+++
T Consensus       207 ~~dri~vl~~G~iv~-~G~~~  226 (240)
T d3dhwc1         207 ICDCVAVISNGELIE-QDTVS  226 (240)
T ss_dssp             HCSEEEEEETTEEEE-EEETT
T ss_pred             hCCEEEEEECCEEEE-ECCHH
Confidence            999999999999986 44443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.3e-40  Score=259.77  Aligned_cols=154  Identities=25%  Similarity=0.322  Sum_probs=130.8

Q ss_pred             cccCcccCCceeEEecC---------CeEEEEEecCCCCCCCccCCHHHHHHHh-cCCC----HHHHHHHHhhCCCCccc
Q psy11928          2 YAHCDLQPQQGELKKNH---------RLRIGRFDQHSGEHLTAEETPAEYLQRL-FNLP----YEKARKQLGTFGLAGHA   67 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~~~~~~~~~~-~~~~----~~~~~~~l~~~~l~~~~   67 (184)
                      .|+|+++|++|+|.+++         +++|||+||++.  +.+..|+.+++... ...+    .+++.++++.+|+++..
T Consensus        43 ~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~--l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~  120 (240)
T d2onka1          43 LIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL  120 (240)
T ss_dssp             HHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT
T ss_pred             HHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchh--hcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhh
Confidence            58999999999998764         467999999974  56667777776542 1222    24678899999998776


Q ss_pred             ccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHHHHHhhcCeEEE
Q psy11928         68 HTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        68 ~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      + +++++|||||||||+|||||+.+|++|||||||+|||+.++..+++.+++    .+.|||+||||++++..+||++++
T Consensus       121 ~-~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~v  199 (240)
T d2onka1         121 D-RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV  199 (240)
T ss_dssp             T-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE
T ss_pred             h-CChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence            5 58999999999999999999999999999999999999999999998864    378999999999999999999999


Q ss_pred             EeCCeEEEecCChhHH
Q psy11928        144 IENQTIEEIDGDFDDY  159 (184)
Q Consensus       144 l~~g~i~~~~~~~~~~  159 (184)
                      |++|++++ .|+++++
T Consensus       200 m~~G~ii~-~G~~~el  214 (240)
T d2onka1         200 MLNGRIVE-KGKLKEL  214 (240)
T ss_dssp             EETTEEEE-EECHHHH
T ss_pred             EECCEEEE-EecHHHH
Confidence            99999976 5666554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.2e-40  Score=255.50  Aligned_cols=147  Identities=25%  Similarity=0.323  Sum_probs=122.0

Q ss_pred             cccCcccCCceeEEecC---------------CeEEEEEecCCCCCCCccCCHHHHHHH---h---cCCCH----HHHHH
Q psy11928          2 YAHCDLQPQQGELKKNH---------------RLRIGRFDQHSGEHLTAEETPAEYLQR---L---FNLPY----EKARK   56 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~~~~~~~~~---~---~~~~~----~~~~~   56 (184)
                      +|+|+++|++|+|.+++               +++|||+||++.  +.+..|+.+++..   .   .+.+.    +++.+
T Consensus        50 ~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~  127 (230)
T d1l2ta_          50 IIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALE  127 (230)
T ss_dssp             HHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH
T ss_pred             hccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchh--hCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHH
Confidence            58999999999998764               135999999974  5566677665432   1   12222    35677


Q ss_pred             HHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecCHH
Q psy11928         57 QLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE----YKGGVIIVSHDER  132 (184)
Q Consensus        57 ~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~  132 (184)
                      +++.+++.+...+++|.+|||||||||+|||||+.+|++|||||||++||+.++..++++|.+    .+.|||+||||++
T Consensus       128 ~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~  207 (230)
T d1l2ta_         128 CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN  207 (230)
T ss_dssp             HHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred             HHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH
Confidence            899999976443468999999999999999999999999999999999999999999998864    3789999999999


Q ss_pred             HHHhhcCeEEEEeCCeEEE
Q psy11928        133 LIRDTECTLWVIENQTIEE  151 (184)
Q Consensus       133 ~~~~~~~~i~~l~~g~i~~  151 (184)
                      ++ ++|||+++|++|+|++
T Consensus       208 ~a-~~~drv~~m~~G~Iv~  225 (230)
T d1l2ta_         208 VA-RFGERIIYLKDGEVER  225 (230)
T ss_dssp             HH-TTSSEEEEEETTEEEE
T ss_pred             HH-HhCCEEEEEECCEEEE
Confidence            87 6899999999999975

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.6e-39  Score=257.18  Aligned_cols=155  Identities=28%  Similarity=0.402  Sum_probs=127.4

Q ss_pred             cccCcccCCceeEEecC------------------------CeEEEEEecCCCCCCCccCCHHHHHH----HhcCCCH--
Q psy11928          2 YAHCDLQPQQGELKKNH------------------------RLRIGRFDQHSGEHLTAEETPAEYLQ----RLFNLPY--   51 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~~~~~~~~~~~----~~~~~~~--   51 (184)
                      .|+|+++|++|+|.+++                        +++|||+||++.  +.+..|+.+++.    ...+.+.  
T Consensus        47 ~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~--l~~~~tv~env~~~~~~~~~~~~~~  124 (258)
T d1b0ua_          47 CINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKHD  124 (258)
T ss_dssp             HHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechh--hccchhcchhhhhhHHHhcCCCHHH
Confidence            57999999999998653                        135999999974  455566655543    2233332  


Q ss_pred             --HHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEE
Q psy11928         52 --EKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVII  126 (184)
Q Consensus        52 --~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiii  126 (184)
                        +++.++++.+++.+...+++|.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++.   +.|||+
T Consensus       125 ~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~  204 (258)
T d1b0ua_         125 ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV  204 (258)
T ss_dssp             HHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEE
Confidence              457788999999865545679999999999999999999999999999999999999999999988653   689999


Q ss_pred             EecCHHHHHhhcCeEEEEeCCeEEEecCChhHH
Q psy11928        127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||||++++..+||||++|++|+|++ .|+++++
T Consensus       205 vtHdl~~~~~~adri~vm~~G~iv~-~g~~~ev  236 (258)
T d1b0ua_         205 VTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV  236 (258)
T ss_dssp             ECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred             EeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence            9999999999999999999999986 5555443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.7e-38  Score=244.84  Aligned_cols=156  Identities=19%  Similarity=0.276  Sum_probs=128.8

Q ss_pred             cccCcccCCceeEEecC----------CeEEEEEecCCCCCCCccCCHHHHHH---HhcCCCHH----HHHHHHhhCCCC
Q psy11928          2 YAHCDLQPQQGELKKNH----------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLFNLPYE----KARKQLGTFGLA   64 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~~~~~~----~~~~~l~~~~l~   64 (184)
                      +|+|+++|++|+|.+++          +..+||+||.+.  +....++.+++.   ..+.....    .+..+++.++++
T Consensus        47 ~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  124 (238)
T d1vpla_          47 IISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG  124 (238)
T ss_dssp             HHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG
T ss_pred             HHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccc--cCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH
Confidence            58999999999998764          356999999863  344555555542   23344432    456778889998


Q ss_pred             cccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeE
Q psy11928         65 GHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTL  141 (184)
Q Consensus        65 ~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i  141 (184)
                      +..+ +++++||||||||++|||||+.+|++|||||||+|||+.++..+++++++.   |.|||+||||++++..+|||+
T Consensus       125 ~~~~-~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv  203 (238)
T d1vpla_         125 EKIK-DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRI  203 (238)
T ss_dssp             GGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEE
T ss_pred             HHHh-hhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence            7665 589999999999999999999999999999999999999999999998653   789999999999999999999


Q ss_pred             EEEeCCeEEEecCChhHHHH
Q psy11928        142 WVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       142 ~~l~~g~i~~~~~~~~~~~~  161 (184)
                      ++|++|+++. .|+++++.+
T Consensus       204 ~vl~~G~iv~-~g~~~el~~  222 (238)
T d1vpla_         204 ALIHNGTIVE-TGTVEELKE  222 (238)
T ss_dssp             EEEETTEEEE-EEEHHHHHH
T ss_pred             EEEECCEEEE-EcCHHHHHh
Confidence            9999999975 677766644

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=2.3e-37  Score=242.54  Aligned_cols=155  Identities=17%  Similarity=0.192  Sum_probs=125.1

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHhc---C-CC--HHHHHHHHhhC-C
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRLF---N-LP--YEKARKQLGTF-G   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~---~-~~--~~~~~~~l~~~-~   62 (184)
                      +|+|+++|++|+|.+++            +..++|+||++.  +.+..|+.+++....   . ..  .+.+.++++.+ +
T Consensus        51 ~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~--l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (240)
T d1ji0a_          51 AIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPR  128 (240)
T ss_dssp             HHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHH
T ss_pred             HHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccc--cCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhC
Confidence            58999999999999764            224999999874  455667766654321   1 11  23345566666 5


Q ss_pred             CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcC
Q psy11928         63 LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTEC  139 (184)
Q Consensus        63 l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~  139 (184)
                      +++..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++.++++.+++.   |.|||+||||++++.++||
T Consensus       129 l~~~~~-~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~d  207 (240)
T d1ji0a_         129 LKERLK-QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH  207 (240)
T ss_dssp             HHTTTT-SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred             hHHHHh-CchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            665554 589999999999999999999999999999999999999999999988654   6899999999999999999


Q ss_pred             eEEEEeCCeEEEecCChhHHH
Q psy11928        140 TLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       140 ~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      |+++|++|+++. .|+++++.
T Consensus       208 rv~vl~~G~iv~-~g~~~el~  227 (240)
T d1ji0a_         208 YGYVLETGQIVL-EGKASELL  227 (240)
T ss_dssp             EEEEEETTEEEE-EEEHHHHH
T ss_pred             EEEEEECCEEEE-EcCHHHHh
Confidence            999999999975 67766654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.2e-37  Score=244.54  Aligned_cols=157  Identities=23%  Similarity=0.201  Sum_probs=127.5

Q ss_pred             cccCcccCCceeEEecC------------CeEEEEEecCCCCCCCccCCHHHHHHHh----------------cCC-C--
Q psy11928          2 YAHCDLQPQQGELKKNH------------RLRIGRFDQHSGEHLTAEETPAEYLQRL----------------FNL-P--   50 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~~~~~~~~~~----------------~~~-~--   50 (184)
                      .|+|+++|++|+|.+++            +..|+|+||++.  +....++.+++...                +.. .  
T Consensus        49 ~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~--~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (254)
T d1g6ha_          49 VITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE  126 (254)
T ss_dssp             HHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHH
T ss_pred             HHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccc--cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHH
Confidence            58999999999999764            224999999984  34455666654321                011 1  


Q ss_pred             -HHHHHHHHhhCCCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11928         51 -YEKARKQLGTFGLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINE---YKGGVII  126 (184)
Q Consensus        51 -~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiii  126 (184)
                       .+++.++++.+++....+ +++++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++   .|.|||+
T Consensus       127 ~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~  205 (254)
T d1g6ha_         127 MVEKAFKILEFLKLSHLYD-RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI  205 (254)
T ss_dssp             HHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHhcCcchhcc-CchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence             145677899999987664 58999999999999999999999999999999999999999999988864   3789999


Q ss_pred             EecCHHHHHhhcCeEEEEeCCeEEEecCChhHHHHH
Q psy11928        127 VSHDERLIRDTECTLWVIENQTIEEIDGDFDDYRKE  162 (184)
Q Consensus       127 vsHd~~~~~~~~~~i~~l~~g~i~~~~~~~~~~~~~  162 (184)
                      ||||++++.++||||++|++|+++. .|++++..++
T Consensus       206 vsHdl~~~~~~~Drv~vm~~G~iv~-~g~~~e~~~~  240 (254)
T d1g6ha_         206 IEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEEEIKN  240 (254)
T ss_dssp             ECSCCSTTGGGCSEEEEEETTEEEE-EEESHHHHHH
T ss_pred             EeCcHHHHHHhCCEEEEEeCCEEEE-EecHHHHhhc
Confidence            9999999999999999999999986 5666554433

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.8e-35  Score=230.88  Aligned_cols=154  Identities=23%  Similarity=0.264  Sum_probs=120.7

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCC------
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFG------   62 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~------   62 (184)
                      .|+|+++|++|+|.+++           +..++|+||++.  +. ..++.+++...  ...+.+++.+.++..+      
T Consensus        60 ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~  136 (253)
T d3b60a1          60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH--LF-NDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN  136 (253)
T ss_dssp             HHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC--CC-SSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHH
T ss_pred             HHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccc--cC-CcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHH
Confidence            58999999999999864           346999999984  32 33555554332  2334555555444443      


Q ss_pred             -----CCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHH
Q psy11928         63 -----LAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIR  135 (184)
Q Consensus        63 -----l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~  135 (184)
                           ++.... ..+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.|++.  +.|+|+||||++.+.
T Consensus       137 ~l~~gl~t~~~-~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~  215 (253)
T d3b60a1         137 KMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE  215 (253)
T ss_dssp             HSTTGGGSBCC-TTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT
T ss_pred             hccccchhhhc-CCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH
Confidence                 333333 357899999999999999999999999999999999999999999999765  689999999999885


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                       .||+|++|++|+|++ .|+++++.+
T Consensus       216 -~~D~v~vl~~G~Iv~-~G~~~eLl~  239 (253)
T d3b60a1         216 -QADEIVVVEDGIIVE-RGTHSELLA  239 (253)
T ss_dssp             -TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred             -hCCEEEEEECCEEEE-ECCHHHHHh
Confidence             699999999999986 677766554

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-35  Score=229.59  Aligned_cols=155  Identities=21%  Similarity=0.300  Sum_probs=120.3

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHH---------HHHHh
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKA---------RKQLG   59 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~---------~~~l~   59 (184)
                      .|+|+++|++|+|.+++           ++.++|+||++.  +. ..|+.+++....  .......         .+.++
T Consensus        59 li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~  135 (251)
T d1jj7a_          59 LLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQ--VF-GRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS  135 (251)
T ss_dssp             HHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC--CC-SSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHH
T ss_pred             HHhcccCCCcCEEEECCEecchhhhHHHHHHhhhcccccc--cc-CcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence            57999999999998765           356999999984  33 347777765321  1222211         12344


Q ss_pred             hC--CCCcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHH
Q psy11928         60 TF--GLAGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERL  133 (184)
Q Consensus        60 ~~--~l~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~  133 (184)
                      .+  |++.... +.+.+|||||||||+|||||+.+|+|+||||||++||+.+...+++.|.+.    +.|+|+||||++.
T Consensus       136 ~l~~g~~~~i~-~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~  214 (251)
T d1jj7a_         136 GLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL  214 (251)
T ss_dssp             TSTTGGGCBCC-SSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHH
T ss_pred             hccccchhhHh-ccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHH
Confidence            43  3443343 367899999999999999999999999999999999999999999999653    6799999999998


Q ss_pred             HHhhcCeEEEEeCCeEEEecCChhHHHHH
Q psy11928        134 IRDTECTLWVIENQTIEEIDGDFDDYRKE  162 (184)
Q Consensus       134 ~~~~~~~i~~l~~g~i~~~~~~~~~~~~~  162 (184)
                      +. .||+|++|++|+|++ .|+++++.++
T Consensus       215 ~~-~aDrI~vl~~G~iv~-~Gt~~eLl~~  241 (251)
T d1jj7a_         215 VE-QADHILFLEGGAIRE-GGTHQQLMEK  241 (251)
T ss_dssp             HH-TCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred             HH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence            86 599999999999986 6777776543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.5e-35  Score=227.77  Aligned_cols=153  Identities=24%  Similarity=0.318  Sum_probs=119.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCC------
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGL------   63 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l------   63 (184)
                      .|+|+++|++|+|.+++           ++.||||||++.  +. ..|+.+++.... ....+++...++..++      
T Consensus        48 ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~  124 (241)
T d2pmka1          48 LIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV--LL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE  124 (241)
T ss_dssp             HHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--CT-TSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTT
T ss_pred             HHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccc--cC-CccccccccccCccccHHHHHHHHHHHhhHHHHHh
Confidence            47899999999999874           356999999974  33 457878765422 2334444333332222      


Q ss_pred             -----CcccccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         64 -----AGHAHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        64 -----~~~~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                           +.... ..+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.|.+.  +.|+|+|||+++.+. 
T Consensus       125 ~~~~~~t~i~-~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-  202 (241)
T d2pmka1         125 LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-  202 (241)
T ss_dssp             STTGGGSBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-
T ss_pred             hhcchhhhcC-CCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-
Confidence                 22222 356899999999999999999999999999999999999999999999765  679999999999885 


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYR  160 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~  160 (184)
                      .||+|++|++|+|++ .|+++++.
T Consensus       203 ~~D~i~vl~~G~Iv~-~G~~~ell  225 (241)
T d2pmka1         203 NADRIIVMEKGKIVE-QGKHKELL  225 (241)
T ss_dssp             TSSEEEEEETTEEEE-EECHHHHH
T ss_pred             hCCEEEEEECCEEEE-ECCHHHHH
Confidence            699999999999986 67776654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.3e-35  Score=230.42  Aligned_cols=155  Identities=26%  Similarity=0.321  Sum_probs=118.6

Q ss_pred             cccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHh--cCCCHHHHHHHHhhCCCCcc--
Q psy11928          2 YAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRL--FNLPYEKARKQLGTFGLAGH--   66 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~--   66 (184)
                      .|+|+++|++|+|.+++           +++||||||++.  +.. .|+.+++...  .........+.++..++...  
T Consensus        47 ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (242)
T d1mv5a_          47 LLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE  123 (242)
T ss_dssp             HHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTT
T ss_pred             HHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccc--cCC-cchhhheecccccccchhhHHHHHHHHHhhhhhc
Confidence            58999999999998763           457999999984  333 3677775322  12234444444333332211  


Q ss_pred             -----cc---cccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHh
Q psy11928         67 -----AH---TIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRD  136 (184)
Q Consensus        67 -----~~---~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~  136 (184)
                           .+   .....+|||||||||+|||||+.+|+||||||||++||+.+...+++.|++.  +.|+|+||||++.+..
T Consensus       124 ~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~  203 (242)
T d1mv5a_         124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD  203 (242)
T ss_dssp             SSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred             cCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence                 11   1135679999999999999999999999999999999999999999998765  7899999999999874


Q ss_pred             hcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        137 TECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       137 ~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                       ||+|++|++|+|++ .|+++++.+
T Consensus       204 -~D~i~vl~~G~iv~-~G~~~eLl~  226 (242)
T d1mv5a_         204 -ADKIYFIEKGQITG-SGKHNELVA  226 (242)
T ss_dssp             -CSEEEEEETTEECC-CSCHHHHHH
T ss_pred             -CCEEEEEECCEEEE-ECCHHHHHh
Confidence             99999999999975 788777654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.5e-34  Score=227.98  Aligned_cols=155  Identities=26%  Similarity=0.293  Sum_probs=124.3

Q ss_pred             CcccCcccCCceeEEecC-----------CeEEEEEecCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHhhCCCCcc--
Q psy11928          1 MYAHCDLQPQQGELKKNH-----------RLRIGRFDQHSGEHLTAEETPAEYLQRLF-NLPYEKARKQLGTFGLAGH--   66 (184)
Q Consensus         1 ~~~~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--   66 (184)
                      +.|+|+++|++|+|.+++           +..|||+||++.  +. ..|+.+++.... ....+++.+.++..++.+.  
T Consensus        62 ~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~  138 (255)
T d2hyda1          62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI--LF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIM  138 (255)
T ss_dssp             TTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC--CC-SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCCccccccccCCEEcccCCHHHhhheeeeeecccc--CC-CCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHH
Confidence            468999999999998764           357999999974  33 457888875432 2345666666666655321  


Q ss_pred             ---------cccccccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHH
Q psy11928         67 ---------AHTIKMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIR  135 (184)
Q Consensus        67 ---------~~~~~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~  135 (184)
                               .. ....+||||||||++|||||+.+|+++|||||||+||+.+...+++.|.+.  +.|+|+|||+++.+.
T Consensus       139 ~lp~gl~t~i~-~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~  217 (255)
T d2hyda1         139 NLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT  217 (255)
T ss_dssp             TSTTGGGCBCC-GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT
T ss_pred             hccccccchhc-CCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                     21 245689999999999999999999999999999999999999999999765  579999999999885


Q ss_pred             hhcCeEEEEeCCeEEEecCChhHHHH
Q psy11928        136 DTECTLWVIENQTIEEIDGDFDDYRK  161 (184)
Q Consensus       136 ~~~~~i~~l~~g~i~~~~~~~~~~~~  161 (184)
                       .||+|++|++|+|++ .|+++++.+
T Consensus       218 -~~D~ii~l~~G~iv~-~G~~~eLl~  241 (255)
T d2hyda1         218 -HADKIVVIENGHIVE-TGTHRELIA  241 (255)
T ss_dssp             -TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred             -hCCEEEEEECCEEEE-ECCHHHHHh
Confidence             699999999999986 677766544

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-33  Score=217.40  Aligned_cols=153  Identities=21%  Similarity=0.284  Sum_probs=122.7

Q ss_pred             cccCcccCCceeEEecCC-----------eEEEEEecCCCCCCCccCCHHHHHHHhc--CCCHHHHHHHHhhCCCCcccc
Q psy11928          2 YAHCDLQPQQGELKKNHR-----------LRIGRFDQHSGEHLTAEETPAEYLQRLF--NLPYEKARKQLGTFGLAGHAH   68 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~-----------~~ig~v~q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~   68 (184)
                      .|+|+. |++|+|.+++.           ...+|++|....  ....++.+++....  ....+.+.++++.+++.+..+
T Consensus        44 ~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  120 (231)
T d1l7vc_          44 RMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTP--PFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG  120 (231)
T ss_dssp             HHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCC--CSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTT
T ss_pred             HHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccC--CccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhC
Confidence            478964 78999987642           247899997642  22345555543321  223566788999999987775


Q ss_pred             cccccCCChhHHHHHHHHHHHhc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecCHHHHHhhc
Q psy11928         69 TIKMKDLSGGQKARVALAELTLN-------APDVIILDEPTNNLDIESIDALADAINE---YKGGVIIVSHDERLIRDTE  138 (184)
Q Consensus        69 ~~~~~~LSgG~kqrv~laral~~-------~p~illlDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~  138 (184)
                       +++++|||||||||+||||+++       +|++|||||||+|||+.++..+.+++++   .|.|||+||||++++..+|
T Consensus       121 -~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~  199 (231)
T d1l7vc_         121 -RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHA  199 (231)
T ss_dssp             -SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHC
T ss_pred             -cChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHC
Confidence             5899999999999999999987       7799999999999999999999888865   3789999999999999999


Q ss_pred             CeEEEEeCCeEEEecCChhHH
Q psy11928        139 CTLWVIENQTIEEIDGDFDDY  159 (184)
Q Consensus       139 ~~i~~l~~g~i~~~~~~~~~~  159 (184)
                      ||+++|++|+++. .|++++.
T Consensus       200 dri~vl~~G~iv~-~G~~~ev  219 (231)
T d1l7vc_         200 HRAWLLKGGKMLA-SGRREEV  219 (231)
T ss_dssp             SBCCBEETTEECC-CSBHHHH
T ss_pred             CEEEEEECCEEEE-ECCHHHH
Confidence            9999999999975 6776654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=2.6e-32  Score=218.13  Aligned_cols=153  Identities=20%  Similarity=0.238  Sum_probs=115.0

Q ss_pred             cccCcccCCceeEEecCCeEEEEEecCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHhhCCC-------Ccc---ccccc
Q psy11928          2 YAHCDLQPQQGELKKNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGL-------AGH---AHTIK   71 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~---~~~~~   71 (184)
                      .|+|+++|++|+|.+++  +++|+||++.  +.+ .++.+++.........+....++..++       ...   ...+.
T Consensus        81 ~i~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  155 (281)
T d1r0wa_          81 LILGELEASEGIIKHSG--RVSFCSQFSW--IMP-GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG  155 (281)
T ss_dssp             HHHTSSCCSEEEEECCS--CEEEECSSCC--CCS-EEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred             HHhCCCcCCCcEEEECC--EEEEEecccc--ccC-ceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhh
Confidence            57899999999999876  4899999874  332 367777643323333333333333222       111   11234


Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-Hh--cCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAI-NE--YKGGVIIVSHDERLIRDTECTLWVIENQT  148 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~--~~~tiiivsHd~~~~~~~~~~i~~l~~g~  148 (184)
                      ..+|||||||||+|||||+.+|+||||||||++||+.+...+++.+ ..  .++|+|+|||+++.+. .||+|++|++|+
T Consensus       156 ~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~  234 (281)
T d1r0wa_         156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGS  234 (281)
T ss_dssp             CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTE
T ss_pred             ccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCE
Confidence            6789999999999999999999999999999999999999988754 33  2679999999998875 699999999999


Q ss_pred             EEEecCChhHHHH
Q psy11928        149 IEEIDGDFDDYRK  161 (184)
Q Consensus       149 i~~~~~~~~~~~~  161 (184)
                      +++ .|+++++..
T Consensus       235 i~~-~Gt~~eL~~  246 (281)
T d1r0wa_         235 SYF-YGTFSELQS  246 (281)
T ss_dssp             EEE-EECHHHHHH
T ss_pred             EEE-ECCHHHHhc
Confidence            976 677776644

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=4.5e-29  Score=190.26  Aligned_cols=136  Identities=20%  Similarity=0.217  Sum_probs=104.4

Q ss_pred             cccCcccCCceeEEecC------CeEEEEEecCCCCCCCccCCHHHHHH---Hhc--CCCHHHHHHHHhhCCCCcccccc
Q psy11928          2 YAHCDLQPQQGELKKNH------RLRIGRFDQHSGEHLTAEETPAEYLQ---RLF--NLPYEKARKQLGTFGLAGHAHTI   70 (184)
Q Consensus         2 ~~~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~~~~~~~~---~~~--~~~~~~~~~~l~~~~l~~~~~~~   70 (184)
                      +|+|+++|++|+|.+++      +.+++|+||+..  +....++.+++.   ..+  .....++.+.++.+++.+ .. +
T Consensus        46 ~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~  121 (200)
T d1sgwa_          46 TISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LK-K  121 (200)
T ss_dssp             HHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-TT-S
T ss_pred             HHhcccccCCCEEEECCEehhHhcCcEEEEeeccc--CCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-cc-c
Confidence            58999999999999875      457999999864  333445555433   222  334667778888888754 33 4


Q ss_pred             cccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecCHHHHHhhcCeEEEEe
Q psy11928         71 KMKDLSGGQKARVALAELTLNAPDVIILDEPTNNLDIESIDALADAINEY----KGGVIIVSHDERLIRDTECTLWVIE  145 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~i~~l~  145 (184)
                      ++++|||||||||+|||||+.+|+++||||||+|||+.++..+++.+.+.    +.+||.++|++    .+||.+.+|+
T Consensus       122 ~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~  196 (200)
T d1sgwa_         122 KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLH  196 (200)
T ss_dssp             BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGG
T ss_pred             ccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhhee
Confidence            78999999999999999999999999999999999999999988887654    34555555554    3689887764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=3.6e-11  Score=97.97  Aligned_cols=73  Identities=29%  Similarity=0.373  Sum_probs=60.2

Q ss_pred             cccCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecCHHHHHhhcCeEEE
Q psy11928         71 KMKDLSGGQKARVALAELT----LNAPDVIILDEPTNNLDIESIDALADAINEY---KGGVIIVSHDERLIRDTECTLWV  143 (184)
Q Consensus        71 ~~~~LSgG~kqrv~laral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~i~~  143 (184)
                      ++..+|||||.++++|..+    ..++++++||||+++||+..+..+.++|.+.   +.-+|++||++..+.. +|+++.
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~~~~  407 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDALVG  407 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSEEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh-cccEEE
Confidence            5578999999998776543    5677899999999999999999999999764   2359999999998864 688664


Q ss_pred             E
Q psy11928        144 I  144 (184)
Q Consensus       144 l  144 (184)
                      +
T Consensus       408 V  408 (427)
T d1w1wa_         408 V  408 (427)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.94  E-value=1.6e-10  Score=83.71  Aligned_cols=95  Identities=14%  Similarity=0.070  Sum_probs=73.8

Q ss_pred             ccCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC--CCHHHHHHHHHHHHhcCcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q psy11928         72 MKDLSGGQKARVALAELTLNAPDVIILDEPTNN--LDIESIDALADAINEYKGGVIIVSHDERLIRDTECTLWVIENQTI  149 (184)
Q Consensus        72 ~~~LSgG~kqrv~laral~~~p~illlDEPt~~--LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~i~~l~~g~i  149 (184)
                      ..++|+|++++.++++++..+|+++++|||...  .+......+.+.++..+.++|+++|+.... ..|++++.+.+|++
T Consensus        79 ~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~-~~~~~i~~~~~~~i  157 (178)
T d1ye8a1          79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH-PLVKEIRRLPGAVL  157 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCS-HHHHHHHTCTTCEE
T ss_pred             hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHH-HhhceEEEEeCCEE
Confidence            456899999999999999999999999997544  355666777777877789999999997653 46788888899998


Q ss_pred             EEec-CChhHHHHHHHHHh
Q psy11928        150 EEID-GDFDDYRKELLEAL  167 (184)
Q Consensus       150 ~~~~-~~~~~~~~~~~~~~  167 (184)
                      .... .+.+.+.+++++.+
T Consensus       158 ~~v~~~nrd~~~~~i~~~l  176 (178)
T d1ye8a1         158 IELTPENRDVILEDILSLL  176 (178)
T ss_dssp             EECCTTTTTTHHHHHHHHS
T ss_pred             EEECCccHHHHHHHHHHHH
Confidence            7543 23455666665554

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.56  E-value=1.2e-07  Score=73.77  Aligned_cols=76  Identities=28%  Similarity=0.376  Sum_probs=62.4

Q ss_pred             cccCCChhHHHHHHHHHH----HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecCHHHHHhhcCeEEE-
Q psy11928         71 KMKDLSGGQKARVALAEL----TLNAPDVIILDEPTNNLDIESIDALADAINEY--KGGVIIVSHDERLIRDTECTLWV-  143 (184)
Q Consensus        71 ~~~~LSgG~kqrv~lara----l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~i~~-  143 (184)
                      .+..+|+|+|+...++..    ...+|.+++.|||-++|+|.....+.+.|++.  ..-||++||.+..+.. +|+++. 
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~-~d~~~~v  294 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA-ADLLHGV  294 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG-CSEEEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh-cccEEEE
Confidence            467899999998877665    36668999999999999999999999999765  3579999999999874 577754 


Q ss_pred             -EeCC
Q psy11928        144 -IENQ  147 (184)
Q Consensus       144 -l~~g  147 (184)
                       +++|
T Consensus       295 ~~~~g  299 (308)
T d1e69a_         295 TMVNG  299 (308)
T ss_dssp             EESSS
T ss_pred             EEeCC
Confidence             4455

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.75  E-value=0.031  Score=41.06  Aligned_cols=59  Identities=20%  Similarity=0.151  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH----HHHHHHHhcCcEEEEEecCHHHHHh
Q psy11928         78 GQKARVALAELTLNAPDVIILDEPTNNLDIESID----ALADAINEYKGGVIIVSHDERLIRD  136 (184)
Q Consensus        78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~----~l~~~l~~~~~tiiivsHd~~~~~~  136 (184)
                      .|-+++.-+.-.+.+..++|+||+..|=++....    .+.+.|.+.+..++++||..+....
T Consensus       100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l  162 (224)
T d1ewqa2         100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL  162 (224)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred             HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhhh
Confidence            4555555555567788899999999999997654    4455556667899999999877653

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.14  Score=37.60  Aligned_cols=58  Identities=14%  Similarity=0.087  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH----HHHHHh-cCcEEEEEecCHHHHH
Q psy11928         78 GQKARVALAELTLNAPDVIILDEPTNNLDIESIDAL----ADAINE-YKGGVIIVSHDERLIR  135 (184)
Q Consensus        78 G~kqrv~laral~~~p~illlDEPt~~LD~~~~~~l----~~~l~~-~~~tiiivsHd~~~~~  135 (184)
                      .|-+++.-+.--+.+..++|+||+..|=++.....+    .+.+.. .+..++++||..+...
T Consensus       106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            344444444445777789999999999998765444    333333 2457888999766543