Psyllid ID: psy1192

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
IHLENIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPDEEKIKFGSGSDFGLL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHEHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHEEcccccccccc
Coil and Loop (DISEMBL)
IHLENIQIIFlshnfpgkllhkdLDDRALDALKEYPSEGAIAVLNQFLESnlehvsnksAFLCGIMKTYRqksrsgmagvASTSAVLtlkgpdeekikfgsgsdfgll
Flexible Loop (DISEMBL)
IHLENIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRqksrsgmagVASTSAvltlkgpdeekikfgsgsdfgll
Low Complexity Region (SEG)
IHLENIQIIFLSHNFPGkllhkdlddraldalkEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPDEEKIKFGSGSDFGLL
Disordered region (IsUnstruct)
****NIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYR**************************************
Disordered Region (DISOPRED)
***ENIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKT****************************IKFGSGSDFGLL
Disordered Region (DISEMBL)
IHLENIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYR************TSAVLTLKGPDEEKIKFGSGSDFGLL
Disordered Region (DISPRO)
IHLENIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSR***************KGPD****KFGSGSDF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IHLENIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPDEEKIKFGSGSDFGLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q7TMK9	623	Heterogeneous nuclear rib	yes	N/A	0.842	0.146	0.495	3e-20
O60506	623	Heterogeneous nuclear rib	yes	N/A	0.842	0.146	0.495	3e-20
O43390	633	Heterogeneous nuclear rib	no	N/A	0.703	0.120	0.573	6e-20

>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/111 (49%), Positives = 69/111 (62%), Gaps = 20/111 (18%)

Query: 1   IHLENIQIIFLSHNFP-------------GKLLHKDLDDRALDALKEYPSEGAIAVLNQF 47
           IH EN Q + L    P             G + H DLD+RA++ALKE+  +GA+AVL QF
Sbjct: 22  IHSENFQTL-LDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQF 80

Query: 48  LESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPDEEKIK 98
            +S+L HV NKSAFLCG+MKTYRQ+ + G   VA +S     KGPDE KIK
Sbjct: 81  KDSDLSHVQNKSAFLCGVMKTYRQREKQGTK-VADSS-----KGPDEAKIK 125

Heterogeneous nuclear ribonucleoprotein (hnRNP) implicated in mRNA processing mechanisms. Component of the CRD-mediated complex that promotes MYC mRNA stability. Isoform 1 and isoform 2 are associated in vitro with pre-mRNA, splicing intermediates and mature mRNA protein complexes. Isoform 1 binds to apoB mRNA AU-rich sequences (By similarity). Isoform 1 is part of the APOB mRNA editosome complex and may modulate the postranscriptional C to U RNA-editing of the APOB mRNA through either by binding to A1CF (APOBEC1 complementation factor), to APOBEC1 or to RNA itself (By similarity). May be involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain (By similarity). Interacts in vitro preferentially with poly(A) and poly(U) RNA sequences. Isoform 2 may be involved in cytoplasmic vesicle-based mRNA transport through interaction with synaptotagmins.
Mus musculus (taxid: 10090)

>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/111 (49%), Positives = 69/111 (62%), Gaps = 20/111 (18%)

Query: 1   IHLENIQIIFLSHNFP-------------GKLLHKDLDDRALDALKEYPSEGAIAVLNQF 47
           IH EN Q + L    P             G + H DLD+RA++ALKE+  +GA+AVL QF
Sbjct: 22  IHSENFQTL-LDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQF 80

Query: 48  LESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPDEEKIK 98
            +S+L HV NKSAFLCG+MKTYRQ+ + G   VA +S     KGPDE KIK
Sbjct: 81  KDSDLSHVQNKSAFLCGVMKTYRQREKQGTK-VADSS-----KGPDEAKIK 125

Heterogenous nuclear ribonucleoprotein (hnRNP) implicated in mRNA processing mechanisms. Component of the CRD-mediated complex that promotes MYC mRNA stability. Isoform 1, isoform 2 and isoform 3 are associated in vitro with pre-mRNA, splicing intermediates and mature mRNA protein complexes. Isoform 1 binds to apoB mRNA AU-rich sequences. Isoform 1 is part of the APOB mRNA editosome complex and may modulate the postranscriptional C to U RNA-editing of the APOB mRNA through either by binding to A1CF (APOBEC1 complementation factor), to APOBEC1 or to RNA itself. May be involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain. Interacts in vitro preferentially with poly(A) and poly(U) RNA sequences. Isoform 3 may be involved in cytoplasmic vesicle-based mRNA transport through interaction with synaptotagmins.

Homo sapiens (taxid: 9606)

>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 6/82 (7%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           G + + DLD+RA+DAL+E+  EGA++VL QF ES+L HV NKSAFLCG+MKTYRQ+ + G
Sbjct: 53  GLVAYVDLDERAIDALREFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQG 112

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
                ST      KGPDE KIK
Sbjct: 113 SKVQEST------KGPDEAKIK 128

Component of ribonucleosomes, which are complexes of at least 20 other different heterogenious nuclear ribonucleoproteins (hnRNP). hnRNP play an important role in processing of precursor mRNA in the nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
357617562	668	hypothetical protein KGM_04943 [Danaus p	0.759	0.122	0.707	3e-29
195113079	721	GI10594 [Drosophila mojavensis] gi|19391	0.759	0.113	0.707	3e-28
195390987	789	GJ22950 [Drosophila virilis] gi|19415223	0.759	0.103	0.707	4e-28
195055139	532	GH17270 [Drosophila grimshawi] gi|193892	0.759	0.154	0.695	5e-28
194744098	710	GF16693 [Drosophila ananassae] gi|190627	0.759	0.115	0.695	1e-27
198450702	674	GA27045, isoform A [Drosophila pseudoobs	0.759	0.121	0.695	3e-27
390177341	483	GA27045, isoform B [Drosophila pseudoobs	0.759	0.169	0.695	4e-27
189234965	905	PREDICTED: similar to CG17838 CG17838-PB	0.759	0.090	0.707	4e-27
195449649	731	GK22469 [Drosophila willistoni] gi|19416	0.759	0.112	0.682	6e-27
442620163	569	syncrip, isoform R [Drosophila melanogas	0.731	0.138	0.707	8e-27

>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/82 (70%), Positives = 74/82 (90%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H++LD+RALDALKE+PS+GA++VL QFL+SNLEHVSNKSAFLCG+MKTYRQKSR+G
Sbjct: 49  GKLAHEELDERALDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAG 108

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
           + G  + +A + +KGPDEEKI+
Sbjct: 109 VQGAPALAAAVQVKGPDEEKIR 130

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis] gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/82 (70%), Positives = 72/82 (87%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H +LD+RALDALKE+P +GA+ VL+QFLESNLEHVSNKSA+LCG+MKTYRQKSR+ 
Sbjct: 107 GKLAHAELDERALDALKEFPVDGALNVLSQFLESNLEHVSNKSAYLCGVMKTYRQKSRAS 166

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
             GV +T++ + +KGPDEEKIK
Sbjct: 167 QQGVPATASTIQVKGPDEEKIK 188

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis] gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/82 (70%), Positives = 72/82 (87%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H +LD+RALDALKE+P +GA+ VL+QFLESNLEHVSNKSA+LCG+MKTYRQKSR+ 
Sbjct: 51  GKLAHAELDERALDALKEFPVDGALNVLSQFLESNLEHVSNKSAYLCGVMKTYRQKSRAS 110

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
             GV +T++ + +KGPDEEKIK
Sbjct: 111 QQGVPATASSIQVKGPDEEKIK 132

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi] gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/82 (69%), Positives = 72/82 (87%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H +LD+RALDALKE+P +GA+ VL+QFLESNLEHVSNKSA+LCG+MKTYRQKSR+ 
Sbjct: 51  GKLAHAELDERALDALKEFPVDGALNVLSQFLESNLEHVSNKSAYLCGVMKTYRQKSRAS 110

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
             GV +T++ + +KGPDE+KIK
Sbjct: 111 QQGVPATASTIQVKGPDEDKIK 132

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae] gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/82 (69%), Positives = 70/82 (85%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H +LD+RALDALKE+P +GA+ VL QFLESNLEHVSNKSA+LCG+MKTYRQKSR+ 
Sbjct: 51  GKLAHAELDERALDALKEFPVDGALNVLGQFLESNLEHVSNKSAYLCGVMKTYRQKSRAS 110

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
             GV + +A + +KGPDE+KIK
Sbjct: 111 QQGVPTPAAAVQVKGPDEDKIK 132

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura] gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/82 (69%), Positives = 69/82 (84%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H +LD+RALDALKE+P EGA+ VL QFLESNLEHVSNKSA+LCG+MKTYRQKSR+ 
Sbjct: 51  GKLAHAELDERALDALKEFPVEGALNVLGQFLESNLEHVSNKSAYLCGVMKTYRQKSRAS 110

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
             GV + +  + +KGPDE+KIK
Sbjct: 111 QQGVPAPATAVQVKGPDEDKIK 132

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/82 (69%), Positives = 69/82 (84%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H +LD+RALDALKE+P EGA+ VL QFLESNLEHVSNKSA+LCG+MKTYRQKSR+ 
Sbjct: 51  GKLAHAELDERALDALKEFPVEGALNVLGQFLESNLEHVSNKSAYLCGVMKTYRQKSRAS 110

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
             GV + +  + +KGPDE+KIK
Sbjct: 111 QQGVPAPATAVQVKGPDEDKIK 132

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/82 (70%), Positives = 69/82 (84%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H DLD+RALDALKE+P +GA+ VL QFL+SNLEHVSNKSA+LCG+MKTYRQKSR+G
Sbjct: 61  GKLAHVDLDERALDALKEFPVDGALNVLGQFLDSNLEHVSNKSAYLCGVMKTYRQKSRAG 120

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
            +   +T A   +KGPDEEKIK
Sbjct: 121 SSQGTTTPAPAPVKGPDEEKIK 142

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni] gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/82 (68%), Positives = 69/82 (84%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H +LD+RALDALKE+P +GA+ VL QFLESNLEHVSNKSA+LCG+MKTYRQKSR+ 
Sbjct: 51  GKLAHAELDERALDALKEFPVDGALNVLGQFLESNLEHVSNKSAYLCGVMKTYRQKSRAS 110

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
             GV + +  + +KGPDE+KIK
Sbjct: 111 QQGVPTPAPAVQVKGPDEDKIK 132

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster] gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/82 (70%), Positives = 70/82 (85%), Gaps = 3/82 (3%)

Query: 17  GKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSG 76
           GKL H +LD+RALDALKE+P +GA+ VL QFLESNLEHVSNKSA+LCG+MKTYRQKSR+ 
Sbjct: 51  GKLAHAELDERALDALKEFPVDGALNVLGQFLESNLEHVSNKSAYLCGVMKTYRQKSRAS 110

Query: 77  MAGVASTSAVLTLKGPDEEKIK 98
             GVA+ +   T+KGPDE+KIK
Sbjct: 111 QQGVAAPA---TVKGPDEDKIK 129

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
FB|FBgn0038826	711	Syp "Syncrip" [Drosophila mela	0.574	0.087	0.692	2.9e-18
UNIPROTKB|F6UXX1	185	SYNCRIP "Heterogeneous nuclear	0.546	0.318	0.584	6.2e-14
ZFIN|ZDB-GENE-040426-2766	214	hnrnpr "heterogeneous nuclear	0.546	0.275	0.584	1.3e-13
UNIPROTKB|F1NZU2	447	SYNCRIP "Uncharacterized prote	0.546	0.131	0.6	1.8e-13
UNIPROTKB|F1LUZ6	381	Hnrnpr "Protein Hnrnpr" [Rattu	0.546	0.154	0.584	2.6e-13
UNIPROTKB|F1NWI9	622	SYNCRIP "Uncharacterized prote	0.546	0.094	0.6	3.3e-13
UNIPROTKB|F6XIK8	562	SYNCRIP "Uncharacterized prote	0.546	0.104	0.584	5.9e-13
UNIPROTKB|Q2L7G6	595	HNRNPR "Heterogeneous nuclear	0.546	0.099	0.584	6.5e-13
ZFIN|ZDB-GENE-030131-4862	694	syncrip "synaptotagmin binding	0.546	0.085	0.6	6.5e-13
UNIPROTKB|I3LKZ4	599	HNRNPR "Uncharacterized protei	0.546	0.098	0.584	6.6e-13

FB|FBgn0038826 Syp "Syncrip" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 45/65 (69%), Positives = 55/65 (84%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+P +GA+ VL QFLESNLEHVSNKSA+LCG+MKTYRQKSR+   GVA+ +   T+KGPD
Sbjct:    68 EFPVDGALNVLGQFLESNLEHVSNKSAYLCGVMKTYRQKSRASQQGVAAPA---TVKGPD 124

Query:    94 EEKIK 98
             E+KIK
Sbjct:   125 EDKIK 129

GO:0003729 "mRNA binding" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0022008 "neurogenesis" evidence=IMP

GO:0046011 "regulation of oskar mRNA translation" evidence=IMP

GO:0007310 "oocyte dorsal/ventral axis specification" evidence=IMP

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0035770 "ribonucleoprotein granule" evidence=IDA

UNIPROTKB|F6UXX1 SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+  +GA+AVL QF +S+L HV NKSAFLCG+MKTYRQ+ + G   VA +S     KGPD
Sbjct:    67 EFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTK-VADSS-----KGPD 120

Query:    94 EEKIK 98
             E KIK
Sbjct:   121 EAKIK 125

GO:0005737 "cytoplasm" evidence=IEA

GO:0008143 "poly(A) RNA binding" evidence=IEA

GO:0071204 "histone pre-mRNA 3'end processing complex" evidence=IEA

ZFIN|ZDB-GENE-040426-2766 hnrnpr "heterogeneous nuclear ribonucleoprotein R" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+  EGA++VL QF ES+L HV NKSAFLCG+MKTYRQ+ + G   V  +S     KGPD
Sbjct:    75 EFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGNK-VQESS-----KGPD 128

Query:    94 EEKIK 98
             E KIK
Sbjct:   129 ETKIK 133

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0003729 "mRNA binding" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NZU2 SYNCRIP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 39/65 (60%), Positives = 47/65 (72%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+  EGA+AVL QF +S+L HV NKSAFLCG+MKTYRQ+ + G   VA +S     KGPD
Sbjct:    66 EFNEEGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTK-VADSS-----KGPD 119

Query:    94 EEKIK 98
             E KIK
Sbjct:   120 EAKIK 124

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1LUZ6 Hnrnpr "Protein Hnrnpr" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 38/65 (58%), Positives = 45/65 (69%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+  EGA++VL QF ES+L HV NKSAFLCG+MKTYRQ+ + G     ST      KGPD
Sbjct:    39 EFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQEST------KGPD 92

Query:    94 EEKIK 98
             E KIK
Sbjct:    93 EAKIK 97

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NWI9 SYNCRIP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 39/65 (60%), Positives = 47/65 (72%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+  EGA+AVL QF +S+L HV NKSAFLCG+MKTYRQ+ + G   VA +S     KGPD
Sbjct:    66 EFNEEGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTK-VADSS-----KGPD 119

Query:    94 EEKIK 98
             E KIK
Sbjct:   120 EAKIK 124

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008143 "poly(A) RNA binding" evidence=IEA

GO:0070934 "CRD-mediated mRNA stabilization" evidence=IEA

GO:0070937 "CRD-mediated mRNA stability complex" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0071204 "histone pre-mRNA 3'end processing complex" evidence=IEA

UNIPROTKB|F6XIK8 SYNCRIP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+  +GA+AVL QF +S+L HV NKSAFLCG+MKTYRQ+ + G   VA +S     KGPD
Sbjct:    67 EFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTK-VADSS-----KGPD 120

Query:    94 EEKIK 98
             E KIK
Sbjct:   121 EAKIK 125

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q2L7G6 HNRNPR "Heterogeneous nuclear ribonucleoprotein R" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 38/65 (58%), Positives = 45/65 (69%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+  EGA++VL QF ES+L HV NKSAFLCG+MKTYRQ+ + G     ST      KGPD
Sbjct:    70 EFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQEST------KGPD 123

Query:    94 EEKIK 98
             E KIK
Sbjct:   124 EAKIK 128

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-030131-4862 syncrip "synaptotagmin binding, cytoplasmic RNA interacting protein" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 39/65 (60%), Positives = 45/65 (69%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+  EGA+ VL QF ES+L HV NKSAFLCG+MKTYRQ+ + G   V ST      KGPD
Sbjct:   131 EFNEEGALQVLIQFKESDLSHVQNKSAFLCGVMKTYRQREKQGTKVVEST------KGPD 184

Query:    94 EEKIK 98
             E KIK
Sbjct:   185 EAKIK 189

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LKZ4 HNRNPR "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 180 (68.4 bits), Expect = 6.6e-13, P = 6.6e-13
 Identities = 38/65 (58%), Positives = 45/65 (69%)

Query:    34 EYPSEGAIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPD 93
             E+  EGA++VL QF ES+L HV NKSAFLCG+MKTYRQ+ + G     ST      KGPD
Sbjct:    70 EFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQEST------KGPD 123

Query:    94 EEKIK 98
             E KIK
Sbjct:   124 EAKIK 128

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
KOG0117|consensus	506		98.35
PF02885	66	Glycos_trans_3N: Glycosyl transferase family, heli	84.67

>KOG0117|consensus

Probab=98.35  E-value=8.1e-08  Score=83.62  Aligned_cols=50  Identities=48%  Similarity=0.610  Sum_probs=41.5

Q ss_pred             HHHHHHHHhhcccccccchhHHHHHHHHHHHHHhhccCCCCcccccccCCCCCCHHhhcc
Q psy1192          40 AIAVLNQFLESNLEHVSNKSAFLCGIMKTYRQKSRSGMAGVASTSAVLTLKGPDEEKIKF   99 (108)
Q Consensus        40 Al~vl~qF~eS~L~hV~NKSAFL~gVMKtyRqr~r~g~~g~~~~~~~~l~kGPde~kIK~   99 (108)
                      |+++++||++|+|+||+|||||+|+.|++++|++.++..|.++          +|++|++
T Consensus         1 ~~~~~~~~kes~~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------~eaal~a   50 (506)
T KOG0117|consen    1 ASFVLTEFKESDLSHVQEKSAFLDGDNDTSNQREEQGVAGVQS----------EEAALKA   50 (506)
T ss_pred             CchHHHHHhhhhhhhhhhhhhhccccCcchhhccccccccccc----------HHHHHHH
Confidence            5789999999999999999999999999999999765443322          6777665

>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=84.67  E-value=2.4  Score=26.93  Aligned_cols=32  Identities=22%  Similarity=0.425  Sum_probs=23.4

Q ss_pred             hcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192          33 KEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI   65 (108)
Q Consensus        33 kef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV   65 (108)
                      +.++.++|..+++.+.+-+.+-+ ..+||||++
T Consensus        13 ~~Ls~~e~~~~~~~i~~g~~s~~-qiaAfL~al   44 (66)
T PF02885_consen   13 EDLSREEAKAAFDAILDGEVSDA-QIAAFLMAL   44 (66)
T ss_dssp             ----HHHHHHHHHHHHTTSS-HH-HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence            56778889999999998888877 689999986

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1o17a1	70	Anthranilate phosphoribosyltransferase (TrpD) {Arc	80.79

>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: Methionine synthase domain-like
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.79  E-value=1.4  Score=25.67  Aligned_cols=44  Identities=16%  Similarity=0.164  Sum_probs=34.0

Q ss_pred             hHHHHHHHHhcCCCCCcccchHHHHHHhhcCChHHHHHHHHHHhhcccccccchhHHHHHH
Q psy1192           5 NIQIIFLSHNFPGKLLHKDLDDRALDALKEYPSEGAIAVLNQFLESNLEHVSNKSAFLCGI   65 (108)
Q Consensus         5 ~iq~~l~~iy~sG~l~~~DLDeRAidaLkef~~e~Al~vl~qF~eS~L~hV~NKSAFL~gV   65 (108)
                      |++.+|..|..-                +.++.+++..+++.+.+-+++-+ ..+|||+++
T Consensus         2 ~~~~il~~l~~g----------------~~Ls~~e~~~~~~~i~~g~~s~~-qiaafL~al   45 (70)
T d1o17a1           2 NINEILKKLINK----------------SDLEINEAEELAKAIIRGEVPEI-LVSAILVAL   45 (70)
T ss_dssp             CHHHHHHHHHTT----------------CCCCHHHHHHHHHHHHTTCSCHH-HHHHHHHHH
T ss_pred             CHHHHHHHHHcC----------------CCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence            466666666653                45778889999999998888888 688899886