Psyllid ID: psy11941

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MESQDSEEVKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV
ccccccHHccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccccEEEEccccccccccccccHHHHHHHcccEEEcccccccccEEEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccccccccccccEEEEcccccccccccccccccEEEEccccccccccccccccccEEEEEEEEcccEEEEEEccccccccc
ccccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccEccccccHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccEcccccccEEEEEEEEEccccccccccccccHHHHHHHHcHHHccccccccccEEEEEEEEEcccEEEEEEccccccHHHHHHHHHcccEEEEccccccccEEEEEEEcccccccccccccHHHcHHHccEEEEccccccEccccccccccEEEEcccccEEEEcccccccccEEEEEEEEcccEEEEEcccccEcccc
mesqdseevkqeeveyddrntIRIMIASDIHlgyletdrergndsfVSFEEILEQALDQEVDMVLLGGdlfhinkpspttLKKCLETLRKYcigdrsvfidvisdpklvmcndhvnymdpnlnislpvftingnhddpsgPELVAALDIVsnsglvnyfgkctnlneitlnpliiqkneTKVAIFGLGYVKDERLCNMIKhnkvkymkptddkdIIYILVLHqnrpergtvkniaedsipsFFHFILWGhehecrikpeyntkqrfhvcqpgspvatslcageaVQKKCGIlmcnkqnyklvprsletvrpfv
mesqdseevkqeeveyddrntiriMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHnkvkymkptddKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILmcnkqnyklvprsletvrpfv
MESQDSEEVKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV
******************RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVP**********
*********************IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV
**************EYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV
*****************DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPF*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESQDSEEVKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query313 2.2.26 [Sep-21-2011]
Q9IAM7 700 Double-strand break repai yes N/A 0.945 0.422 0.496 3e-85
Q9W6K1 711 Double-strand break repai N/A N/A 0.939 0.413 0.496 7e-84
Q61216 706 Double-strand break repai yes N/A 0.945 0.419 0.486 8e-83
P49959 708 Double-strand break repai yes N/A 0.945 0.418 0.48 2e-82
Q9JIM0 706 Double-strand break repai yes N/A 0.945 0.419 0.476 2e-82
Q60HE6 707 Double-strand break repai N/A N/A 0.939 0.415 0.486 2e-82
Q09683 649 DNA repair protein rad32 yes N/A 0.948 0.457 0.478 1e-79
Q9XGM2 720 Double-strand break repai yes N/A 0.945 0.411 0.461 1e-72
Q9C291 739 Double-strand break repai N/A N/A 0.939 0.397 0.444 4e-72
Q9UVN9 731 Double-strand break repai N/A N/A 0.948 0.406 0.423 4e-70
>sp|Q9IAM7|MRE11_CHICK Double-strand break repair protein MRE11 OS=Gallus gallus GN=MRE11 PE=2 SV=1 Back     alignment and function desciption
 Score =  315 bits (807), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 149/300 (49%), Positives = 209/300 (69%), Gaps = 4/300 (1%)

Query: 17  DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
           DD +T +I+IA+DIHLGYLE D  RGND+FV+F EILE A   EVD +LLGGDLFH NKP
Sbjct: 8   DDEDTFKILIATDIHLGYLEKDAVRGNDTFVTFNEILEHAQKNEVDFILLGGDLFHENKP 67

Query: 77  SPTTLKKCLETLRKYCIGDRSVFIDVISDPKL---VMCNDHVNYMDPNLNISLPVFTING 133
           S  T+  CLE+LRKYC+GDR V  +V+SD  +   +     VNY D NLNI +P+F+I+G
Sbjct: 68  SRKTIHTCLESLRKYCMGDRPVSFEVLSDQAVNFQLSKFPWVNYQDENLNIFMPIFSIHG 127

Query: 134 NHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE 193
           NHDDP+G + + ALDI+S +GL+N+FG+ T++ +I ++P++++K  TK+A++GLG + DE
Sbjct: 128 NHDDPTGVDALCALDILSCAGLLNHFGRSTSVEKIDISPILLRKGRTKIALYGLGAIPDE 187

Query: 194 RLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
           RL  M  + +V  ++P +D+D  + + V+HQNR + G    I E  +  F +  +WGHEH
Sbjct: 188 RLYRMFVNKQVTMLRPKEDEDSWFNMFVIHQNRSKHGATNYIPEQFLDDFINLAVWGHEH 247

Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPF 312
           EC+I P  N +Q F+V QPGS V TSL  GEAV+K  G+L    +  K+   +LETVR F
Sbjct: 248 ECKITPAQNEQQHFYVTQPGSSVVTSLSPGEAVKKHIGLLRVKGKKMKMQRIALETVRTF 307
Component of the MRN complex, which plays a central role in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity and meiosis. The complex possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity, which are provided by MRE11A. RAD50 may be required to bind DNA ends and hold them in close proximity. This could facilitate searches for short or long regions of sequence homology in the recombining DNA templates, and may also stimulate the activity of DNA ligases and/or restrict the nuclease activity of MRE11A to prevent nucleolytic degradation past a given point. The complex may also be required for DNA damage signaling via activation of the ATM kinase. In telomeres the MRN complex may modulate t-loop formation.
Gallus gallus (taxid: 9031)
>sp|Q9W6K1|MRE11_XENLA Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11 PE=2 SV=1 Back     alignment and function description
>sp|Q61216|MRE11_MOUSE Double-strand break repair protein MRE11A OS=Mus musculus GN=Mre11a PE=2 SV=1 Back     alignment and function description
>sp|P49959|MRE11_HUMAN Double-strand break repair protein MRE11A OS=Homo sapiens GN=MRE11A PE=1 SV=3 Back     alignment and function description
>sp|Q9JIM0|MRE11_RAT Double-strand break repair protein MRE11A OS=Rattus norvegicus GN=Mre11a PE=2 SV=1 Back     alignment and function description
>sp|Q60HE6|MRE11_MACFA Double-strand break repair protein MRE11A OS=Macaca fascicularis GN=MRE11A PE=2 SV=1 Back     alignment and function description
>sp|Q09683|RAD32_SCHPO DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad32 PE=1 SV=1 Back     alignment and function description
>sp|Q9XGM2|MRE11_ARATH Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=2 SV=1 Back     alignment and function description
>sp|Q9C291|MRE11_NEUCR Double-strand break repair protein mus-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-23 PE=3 SV=3 Back     alignment and function description
>sp|Q9UVN9|MRE11_COPC7 Double-strand break repair protein MRE11 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=MRE11 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
170036905 640 double-strand break repair protein MRE11 0.945 0.462 0.498 1e-85
157103253 631 meiotic recombination repair protein 11 0.990 0.491 0.481 4e-85
194759031 606 GF14771 [Drosophila ananassae] gi|190615 0.955 0.493 0.487 4e-85
157126648 641 meiotic recombination repair protein 11 0.945 0.461 0.493 5e-85
326914490 685 PREDICTED: double-strand break repair pr 0.945 0.432 0.503 2e-84
158286826 655 AGAP006797-PA [Anopheles gambiae str. PE 0.936 0.447 0.491 2e-84
209945824 518 meiotic recombination 11 [Drosophila mel 0.958 0.579 0.485 3e-84
195118692 617 GI20705 [Drosophila mojavensis] gi|19391 0.974 0.494 0.475 3e-84
224043625 704 PREDICTED: double-strand break repair pr 0.936 0.416 0.495 7e-84
194861725 620 GG23718 [Drosophila erecta] gi|190661710 0.958 0.483 0.504 8e-84
>gi|170036905|ref|XP_001846301.1| double-strand break repair protein MRE11 [Culex quinquefasciatus] gi|167879929|gb|EDS43312.1| double-strand break repair protein MRE11 [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 148/297 (49%), Positives = 209/297 (70%), Gaps = 1/297 (0%)

Query: 17  DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
           D  +T++I+IASD+HLGY E D  RG DSF++FEE+L+ AL+ +VD V+LGGDLFHI  P
Sbjct: 11  DPDDTMKILIASDVHLGYNEKDVIRGEDSFIAFEEVLQHALENDVDAVILGGDLFHIANP 70

Query: 77  SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
           S  TL +C   L+ Y +GD+ + ++ +SD         VNY DPN+NI++PVF+I+GNHD
Sbjct: 71  STNTLNRCTRLLKTYMLGDKPIKLEFLSDQNENFLESTVNYEDPNMNIAIPVFSIHGNHD 130

Query: 137 DPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLC 196
           DPSG   +++LD++S +G VNYFGK T+L +I ++P++++K ETK+A++GL Y+ D RL 
Sbjct: 131 DPSGFGRISSLDLLSTNGYVNYFGKWTDLTKINISPILLKKGETKLALYGLSYISDARLA 190

Query: 197 NMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRI 256
            +    KV   KP +D     I+VLHQNR +RG    + E S+P F   ++WGHEH+CRI
Sbjct: 191 RLFNEAKVFLEKP-EDAGWFNIMVLHQNRADRGPKNYLPEKSLPGFLDLVIWGHEHDCRI 249

Query: 257 KPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313
            PE N  ++F+V QPGS VATSL  GE++ K CGIL  +K  ++L P  L+TVRPFV
Sbjct: 250 IPEENPAKKFYVSQPGSTVATSLAEGESIDKCCGILSIHKSLFRLDPIKLQTVRPFV 306

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157103253|ref|XP_001647893.1| meiotic recombination repair protein 11 (mre11) [Aedes aegypti] gi|108884725|gb|EAT48950.1| AAEL000034-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|194759031|ref|XP_001961753.1| GF14771 [Drosophila ananassae] gi|190615450|gb|EDV30974.1| GF14771 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|157126648|ref|XP_001654690.1| meiotic recombination repair protein 11 (mre11) [Aedes aegypti] gi|108873213|gb|EAT37438.1| AAEL010595-PA [Aedes aegypti] gi|122937786|gb|ABM68620.1| AAEL010595-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|326914490|ref|XP_003203558.1| PREDICTED: double-strand break repair protein MRE11-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|158286826|ref|XP_308950.4| AGAP006797-PA [Anopheles gambiae str. PEST] gi|157020654|gb|EAA04178.4| AGAP006797-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|209945824|gb|ACI97143.1| meiotic recombination 11 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195118692|ref|XP_002003870.1| GI20705 [Drosophila mojavensis] gi|193914445|gb|EDW13312.1| GI20705 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|224043625|ref|XP_002198371.1| PREDICTED: double-strand break repair protein MRE11-like [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|194861725|ref|XP_001969843.1| GG23718 [Drosophila erecta] gi|190661710|gb|EDV58902.1| GG23718 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
FB|FBgn0020270 620 mre11 "meiotic recombination 1 0.955 0.482 0.503 4.1e-81
UNIPROTKB|F1N9H0 702 MRE11A "Uncharacterized protei 0.945 0.421 0.5 2e-79
UNIPROTKB|F1NYL0 693 MRE11A "Uncharacterized protei 0.945 0.427 0.5 2e-79
ZFIN|ZDB-GENE-040426-2638 619 mre11a "meiotic recombination 0.939 0.474 0.480 5.4e-79
UNIPROTKB|Q9IAM7 700 MRE11 "Double-strand break rep 0.945 0.422 0.496 1.8e-78
DICTYBASE|DDB_G0293546 689 mre11 "DNA repair exonuclease" 0.996 0.452 0.492 4.8e-78
MGI|MGI:1100512 706 Mre11a "meiotic recombination 0.939 0.416 0.493 9e-77
UNIPROTKB|B3KTC7 711 MRE11A "Double-strand break re 0.939 0.413 0.486 1.9e-76
UNIPROTKB|F8W7U8 707 MRE11A "Double-strand break re 0.939 0.415 0.486 1.9e-76
UNIPROTKB|P49959 708 MRE11A "Double-strand break re 0.939 0.415 0.486 1.9e-76
FB|FBgn0020270 mre11 "meiotic recombination 11" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 158/314 (50%), Positives = 218/314 (69%)

Query:    15 EYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHIN 74
             E D  N IRI++A+D HLGY E D  RG DSF +FEEILE A+ ++VDM+LLGGDLFH  
Sbjct:     8 EQDADNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAVSEDVDMILLGGDLFHDA 67

Query:    75 KPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVM---CNDHVNYMDPNLNISLPVFTI 131
              PS   L KC+E LR+Y  GDR V ++++SD         N  VNY DPNLNI++PVF+I
Sbjct:    68 VPSQNALHKCIELLRRYTFGDRPVSLEILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFSI 127

Query:   132 NGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVK 191
             +GNHDDPSG   +++LD++S SGLVNYFG+ T+L ++ ++P++++K E+++A++GL ++ 
Sbjct:   128 HGNHDDPSGFGRLSSLDLLSTSGLVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIH 187

Query:   192 DERLCNMIKHNKVKYMKPT------------DDKDIIYILVLHQNRPERGTVKNIAEDSI 239
             D RL  +IK  KVK+  P             +++D  ++LV+HQNR +RG    + ED +
Sbjct:   188 DGRLARLIKDFKVKFNCPENVANGEDGNESKEEEDWFHLLVVHQNRADRGPKNYLPEDLL 247

Query:   240 PSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNY 299
             PSF H ++WGHEH+CRI+PE N K+RF+V QPGS V TSL  GEA +K  G+L   K  +
Sbjct:   248 PSFLHLVIWGHEHDCRIEPEENAKKRFYVSQPGSSVPTSLSEGEAKKKHVGLLEIYKGKF 307

Query:   300 KLVPRSLETVRPFV 313
             KL P  LETVRPFV
Sbjct:   308 KLKPLPLETVRPFV 321
GO:0004519 "endonuclease activity" evidence=ISS;NAS
GO:0006302 "double-strand break repair" evidence=ISS
GO:0004527 "exonuclease activity" evidence=ISS;NAS
GO:0006289 "nucleotide-excision repair" evidence=NAS
GO:0030145 "manganese ion binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0000723 "telomere maintenance" evidence=IMP
GO:0051276 "chromosome organization" evidence=IMP
GO:0031572 "G2 DNA damage checkpoint" evidence=IMP
GO:0006974 "response to DNA damage stimulus" evidence=IMP
GO:0016233 "telomere capping" evidence=IDA
UNIPROTKB|F1N9H0 MRE11A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYL0 MRE11A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2638 mre11a "meiotic recombination 11 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9IAM7 MRE11 "Double-strand break repair protein MRE11" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293546 mre11 "DNA repair exonuclease" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1100512 Mre11a "meiotic recombination 11 homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B3KTC7 MRE11A "Double-strand break repair protein MRE11A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8W7U8 MRE11A "Double-strand break repair protein MRE11A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P49959 MRE11A "Double-strand break repair protein MRE11A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
TIGR00583 402 TIGR00583, mre11, DNA repair protein (mre11) 1e-115
cd00840223 cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal m 3e-54
COG0420 390 COG0420, SbcD, DNA repair exonuclease [DNA replica 4e-31
pfam00149185 pfam00149, Metallophos, Calcineurin-like phosphoes 7e-09
cd07385223 cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and re 6e-07
cd07402240 cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and 9e-05
TIGR00619253 TIGR00619, sbcd, exonuclease SbcD 0.002
>gnl|CDD|233033 TIGR00583, mre11, DNA repair protein (mre11) Back     alignment and domain information 
 Score =  338 bits (868), Expect = e-115
 Identities = 142/298 (47%), Positives = 199/298 (66%), Gaps = 4/298 (1%)

Query: 20  NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPT 79
           +TIRI+I++D H+GY E D  RG+DS+V+F EIL+ A +Q+VDM+LLGGDLFH NKPS  
Sbjct: 2   DTIRILISTDNHVGYGENDPVRGDDSWVTFNEILQIAKEQDVDMILLGGDLFHENKPSRK 61

Query: 80  TLKKCLETLRKYCIGDRSVFIDVISDPKLVMCND---HVNYMDPNLNISLPVFTINGNHD 136
           +L + L +LR  C+GD+   ++++SD  LV  +    +VNY DPN+N+++PVF+I+GNHD
Sbjct: 62  SLYQVLRSLRLNCLGDKPCELELLSDASLVFGDTAFCNVNYEDPNINVAIPVFSIHGNHD 121

Query: 137 DPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLC 196
           DPSG     ALDI+  +GLVNYFG+    + I ++P+++QK  TK+A++G+  V+DERL 
Sbjct: 122 DPSGDGRYCALDILQATGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLY 181

Query: 197 NMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECR 255
              + NKVK+++P   +D  + +L +HQN         + E  IP F+  ++WGHEHEC 
Sbjct: 182 RTFRDNKVKFLRPNLYRDEWFNLLTVHQNHSAHTPTSYLPESFIPDFYDLVIWGHEHECL 241

Query: 256 IKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313
           I P YN  Q F V QPGS VATSL  GEA  K   IL    + + L    L TVRPFV
Sbjct: 242 IDPVYNPTQGFTVLQPGSTVATSLSPGEAAPKHVFILNITGRKFHLEKIPLRTVRPFV 299

All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria [DNA metabolism, DNA replication, recombination, and repair]. Length = 402
>gnl|CDD|163616 cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain Back     alignment and domain information
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase Back     alignment and domain information
>gnl|CDD|163628 cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain Back     alignment and domain information
>gnl|CDD|163645 cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain Back     alignment and domain information
>gnl|CDD|233056 TIGR00619, sbcd, exonuclease SbcD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 313
KOG2310|consensus 646 100.0
TIGR00583 405 mre11 DNA repair protein (mre11). All proteins in 100.0
PRK10966 407 exonuclease subunit SbcD; Provisional 100.0
COG0420 390 SbcD DNA repair exonuclease [DNA replication, reco 99.98
PHA02546 340 47 endonuclease subunit; Provisional 99.98
TIGR00619253 sbcd exonuclease SbcD. This family is based on the 99.96
cd00840223 MPP_Mre11_N Mre11 nuclease, N-terminal metallophos 99.96
PRK11148275 cyclic 3',5'-adenosine monophosphate phosphodieste 99.85
cd07395262 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, 99.81
cd07385223 MPP_YkuE_C Bacillus subtilis YkuE and related prot 99.8
cd07402240 MPP_GpdQ Enterobacter aerogenes GpdQ and related p 99.8
PRK11340271 phosphodiesterase YaeI; Provisional 99.79
cd07388224 MPP_Tt1561 Thermus thermophilus Tt1561 and related 99.75
cd07400144 MPP_YydB Bacillus subtilis YydB and related protei 99.75
cd07396267 MPP_Nbla03831 Homo sapiens Nbla03831 and related p 99.74
cd07383199 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase 99.71
PF12850156 Metallophos_2: Calcineurin-like phosphoesterase su 99.71
cd07399214 MPP_YvnB Bacillus subtilis YvnB and related protei 99.67
COG2129226 Predicted phosphoesterases, related to the Icc pro 99.66
PRK09453182 phosphodiesterase; Provisional 99.65
cd07392188 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel 99.64
cd07393232 MPP_DR1119 Deinococcus radiodurans DR1119 and rela 99.63
cd07401256 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal 99.63
cd00841155 MPP_YfcE Escherichia coli YfcE and related protein 99.63
TIGR00040158 yfcE phosphoesterase, MJ0936 family. Members of th 99.63
cd07394178 MPP_Vps29 Homo sapiens Vps29 and related proteins, 99.62
COG1409301 Icc Predicted phosphohydrolases [General function 99.58
PF00149200 Metallophos: Calcineurin-like phosphoesterase; Int 99.56
PRK05340241 UDP-2,3-diacylglucosamine hydrolase; Provisional 99.56
cd07378277 MPP_ACP5 Homo sapiens acid phosphatase 5 and relat 99.55
TIGR03729239 acc_ester putative phosphoesterase. Members of thi 99.52
COG0622172 Predicted phosphoesterase [General function predic 99.52
cd00839294 MPP_PAPs purple acid phosphatases of the metalloph 99.51
PF14582255 Metallophos_3: Metallophosphoesterase, calcineurin 99.49
KOG1432|consensus379 99.46
COG1408284 Predicted phosphohydrolases [General function pred 99.42
cd07404166 MPP_MS158 Microscilla MS158 and related proteins, 99.41
cd07379135 MPP_239FB Homo sapiens 239FB and related proteins, 99.41
TIGR01854231 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. 99.4
cd07397238 MPP_DevT Myxococcus xanthus DevT and related prote 99.37
PTZ00422394 glideosome-associated protein 50; Provisional 99.32
cd07406257 MPP_CG11883_N Drosophila melanogaster CG11883 and 99.3
cd00845252 MPP_UshA_N_like Escherichia coli UshA-like family, 99.3
cd07384171 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re 99.22
cd07386243 MPP_DNA_pol_II_small_archeal_C archeal DNA polymer 99.22
cd07410277 MPP_CpdB_N Escherichia coli CpdB and related prote 99.18
cd07390168 MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro 99.18
cd00842296 MPP_ASMase acid sphingomyelinase and related prote 99.18
PRK04036504 DNA polymerase II small subunit; Validated 99.17
COG2908237 Uncharacterized protein conserved in bacteria [Fun 99.15
PLN02533427 probable purple acid phosphatase 99.15
cd07408257 MPP_SA0022_N Staphylococcus aureus SA0022 and rela 99.14
cd07391172 MPP_PF1019 Pyrococcus furiosus PF1019 and related 99.14
cd07411264 MPP_SoxB_N Thermus thermophilus SoxB and related p 99.13
cd00838131 MPP_superfamily metallophosphatase superfamily, me 99.1
KOG2679|consensus336 99.1
cd07405285 MPP_UshA_N Escherichia coli UshA and related prote 99.09
TIGR00024225 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11 99.09
cd07412288 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and 99.09
cd08163257 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related 99.07
cd07409281 MPP_CD73_N CD73 ecto-5'-nucleotidase and related p 98.99
cd07403129 MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel 98.96
PRK09418 780 bifunctional 2',3'-cyclic nucleotide 2'-phosphodie 98.92
cd08166195 MPP_Cdc1_like_1 uncharacterized subgroup related t 98.91
COG0737 517 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesteras 98.88
cd08165156 MPP_MPPE1 human MPPE1 and related proteins, metall 98.88
cd07407282 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and 98.81
PRK09558 551 ushA bifunctional UDP-sugar hydrolase/5'-nucleotid 98.78
PRK11907 814 bifunctional 2',3'-cyclic nucleotide 2'-phosphodie 98.77
cd08164193 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related 98.77
PRK09419 1163 bifunctional 2',3'-cyclic nucleotide 2'-phosphodie 98.76
cd08162313 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA 98.74
PRK09420 649 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosp 98.72
TIGR01390 626 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphod 98.72
PHA02239235 putative protein phosphatase 98.69
COG1407235 Predicted ICC-like phosphoesterases [General funct 98.64
PRK09419 1163 bifunctional 2',3'-cyclic nucleotide 2'-phosphodie 98.63
TIGR03767496 P_acnes_RR metallophosphoesterase, PPA1498 family. 98.63
cd07398217 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat 98.6
TIGR01530 550 nadN NAD pyrophosphatase/5'-nucleotidase NadN. Thi 98.59
cd07425208 MPP_Shelphs Shewanella-like phosphatases, metallop 98.49
COG4186186 Predicted phosphoesterase or phosphohydrolase [Gen 98.48
COG1311481 HYS2 Archaeal DNA polymerase II, small subunit/DNA 98.48
PRK00166275 apaH diadenosine tetraphosphatase; Reviewed 98.48
cd00844262 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t 98.46
cd07423234 MPP_PrpE Bacillus subtilis PrpE and related protei 98.42
cd07387257 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2 98.4
cd07424207 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do 98.3
PRK13625245 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provision 98.29
KOG1378|consensus452 98.22
PRK11439218 pphA serine/threonine protein phosphatase 1; Provi 98.2
cd00144225 MPP_PPP_family phosphoprotein phosphatases of the 98.2
COG1768230 Predicted phosphohydrolase [General function predi 98.18
cd07382255 MPP_DR1281 Deinococcus radiodurans DR1281 and rela 98.15
PRK09968218 serine/threonine-specific protein phosphatase 2; P 98.14
cd07422257 MPP_ApaH Escherichia coli ApaH and related protein 98.13
cd07413222 MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat 98.11
TIGR00668279 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric 98.08
cd07421304 MPP_Rhilphs Rhilph phosphatases, metallophosphatas 98.04
KOG3662|consensus410 97.95
smart00156271 PP2Ac Protein phosphatase 2A homologues, catalytic 97.77
cd07381239 MPP_CapA CapA and related proteins, metallophospha 97.6
cd07416305 MPP_PP2B PP2B, metallophosphatase domain. PP2B (ca 97.57
TIGR00282266 metallophosphoesterase, MG_246/BB_0505 family. A m 97.46
cd07415285 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein 97.43
cd07420321 MPP_RdgC Drosophila melanogaster RdgC and related 97.41
cd07414293 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzyme 97.39
smart00854239 PGA_cap Bacterial capsule synthesis protein PGA_ca 97.38
PF09587250 PGA_cap: Bacterial capsule synthesis protein PGA_c 97.38
PTZ00480320 serine/threonine-protein phosphatase; Provisional 97.36
PTZ00239303 serine/threonine protein phosphatase 2A; Provision 97.28
cd07418377 MPP_PP7 PP7, metallophosphatase domain. PP7 is a p 97.22
KOG3325|consensus183 97.22
cd07419311 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase a 97.15
PF04042209 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit 97.13
cd07417316 MPP_PP5_C PP5, C-terminal metallophosphatase domai 97.13
PTZ00244294 serine/threonine-protein phosphatase PP1; Provisio 97.07
KOG3770|consensus 577 96.86
KOG4419|consensus 602 96.69
KOG3947|consensus305 96.54
TIGR03768 492 RPA4764 metallophosphoesterase, RPA4764 family. Th 96.28
PTZ00235291 DNA polymerase epsilon subunit B; Provisional 95.8
cd07380150 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re 95.17
KOG0372|consensus303 93.68
KOG0373|consensus306 93.51
COG1692266 Calcineurin-like phosphoesterase [General function 91.59
KOG0374|consensus331 90.82
KOG2863|consensus 456 90.64
TIGR03768492 RPA4764 metallophosphoesterase, RPA4764 family. Th 89.97
KOG0371|consensus319 87.72
PF13277253 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C. 86.89
cd07398217 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat 85.32
KOG3818|consensus525 84.62
KOG0375|consensus 517 84.4
>KOG2310|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.6e-51  Score=384.35  Aligned_cols=295  Identities=54%  Similarity=0.964  Sum_probs=283.9

Q ss_pred             CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCce
Q psy11941         19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSV   98 (313)
Q Consensus        19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~   98 (313)
                      .+.||||+++|.|+|+..++..|++|.+.+|++|++.|.++++|+|++.|||||...||..++.++++.|+++|.++.-+
T Consensus        11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~   90 (646)
T KOG2310|consen   11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPV   90 (646)
T ss_pred             ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCce
Confidence            77999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCcccccccC---CCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEE
Q psy11941         99 FIDVISDPKLVMCND---HVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLII  175 (313)
Q Consensus        99 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  175 (313)
                      ++|++||.+-.|.+.   .|||.||++..++|||.|-||||.+.+.+.++++++|...|++++||++..++.+.+.|+++
T Consensus        91 ~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLl  170 (646)
T KOG2310|consen   91 QLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILL  170 (646)
T ss_pred             eeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeee
Confidence            999999999999987   79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCeEEEEEecCCCchHHHHHHhhhcchhccCCCC-CCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCc
Q psy11941        176 QKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTD-DKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHEC  254 (313)
Q Consensus       176 ~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~  254 (313)
                      ++|..++++||++.+.++++-.+..+.++.++.|.. ..+.+++++.|++...+++..++++.+++.++|+|+|||.|.+
T Consensus       171 qKG~tklALYGLg~irDeRL~R~Fk~~~V~f~rPe~~e~dWFNllvlHQNr~~h~~tn~lpE~flp~F~DlviWGHEHEC  250 (646)
T KOG2310|consen  171 QKGSTKLALYGLGSIRDERLYRMFKNGKVTFLRPEEYEDDWFNLLVLHQNRSKHRPTNFLPEQFLPDFLDLVIWGHEHEC  250 (646)
T ss_pred             ccCceeEEEeeccccchHHHHHHHHhCceEEecCccccccceeeEEEeecccCCCCcccCcHhHhhhhhhheeecccccc
Confidence            999999999999999999999999999999999875 4678999999999988887789999999999999999999999


Q ss_pred             cccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCCCCCCC
Q psy11941        255 RIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV  313 (313)
Q Consensus       255 ~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~r~~~  313 (313)
                      ...+..+...+++|.+|||..++|+++++..+|-+.++++.++.+..+.|||.++|||+
T Consensus       251 ~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~  309 (646)
T KOG2310|consen  251 KIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFV  309 (646)
T ss_pred             ccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceeccee
Confidence            99998888899999999999999999999899999999999999999999999999996

>TIGR00583 mre11 DNA repair protein (mre11) Back     alignment and domain information
>PRK10966 exonuclease subunit SbcD; Provisional Back     alignment and domain information
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02546 47 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR00619 sbcd exonuclease SbcD Back     alignment and domain information
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain Back     alignment and domain information
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional Back     alignment and domain information
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain Back     alignment and domain information
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK11340 phosphodiesterase YaeI; Provisional Back     alignment and domain information
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain Back     alignment and domain information
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [] Back     alignment and domain information
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain Back     alignment and domain information
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only] Back     alignment and domain information
>PRK09453 phosphodiesterase; Provisional Back     alignment and domain information
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain Back     alignment and domain information
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR00040 yfcE phosphoesterase, MJ0936 family Back     alignment and domain information
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain Back     alignment and domain information
>COG1409 Icc Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11 Back     alignment and domain information
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional Back     alignment and domain information
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR03729 acc_ester putative phosphoesterase Back     alignment and domain information
>COG0622 Predicted phosphoesterase [General function prediction only] Back     alignment and domain information
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A Back     alignment and domain information
>KOG1432|consensus Back     alignment and domain information
>COG1408 Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase Back     alignment and domain information
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain Back     alignment and domain information
>PTZ00422 glideosome-associated protein 50; Provisional Back     alignment and domain information
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain Back     alignment and domain information
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK04036 DNA polymerase II small subunit; Validated Back     alignment and domain information
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN02533 probable purple acid phosphatase Back     alignment and domain information
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>KOG2679|consensus Back     alignment and domain information
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related Back     alignment and domain information
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain Back     alignment and domain information
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism] Back     alignment and domain information
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed Back     alignment and domain information
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>cd08162 MPP_PhoA_N Synechococcus sp Back     alignment and domain information
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed Back     alignment and domain information
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase Back     alignment and domain information
>PHA02239 putative protein phosphatase Back     alignment and domain information
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only] Back     alignment and domain information
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed Back     alignment and domain information
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family Back     alignment and domain information
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN Back     alignment and domain information
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain Back     alignment and domain information
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only] Back     alignment and domain information
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed Back     alignment and domain information
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain Back     alignment and domain information
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain Back     alignment and domain information
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional Back     alignment and domain information
>KOG1378|consensus Back     alignment and domain information
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional Back     alignment and domain information
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>COG1768 Predicted phosphohydrolase [General function prediction only] Back     alignment and domain information
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional Back     alignment and domain information
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical) Back     alignment and domain information
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain Back     alignment and domain information
>KOG3662|consensus Back     alignment and domain information
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain Back     alignment and domain information
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07416 MPP_PP2B PP2B, metallophosphatase domain Back     alignment and domain information
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family Back     alignment and domain information
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain Back     alignment and domain information
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain Back     alignment and domain information
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap Back     alignment and domain information
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria Back     alignment and domain information
>PTZ00480 serine/threonine-protein phosphatase; Provisional Back     alignment and domain information
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>cd07418 MPP_PP7 PP7, metallophosphatase domain Back     alignment and domain information
>KOG3325|consensus Back     alignment and domain information
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain Back     alignment and domain information
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast Back     alignment and domain information
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain Back     alignment and domain information
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional Back     alignment and domain information
>KOG3770|consensus Back     alignment and domain information
>KOG4419|consensus Back     alignment and domain information
>KOG3947|consensus Back     alignment and domain information
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family Back     alignment and domain information
>PTZ00235 DNA polymerase epsilon subunit B; Provisional Back     alignment and domain information
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>KOG0372|consensus Back     alignment and domain information
>KOG0373|consensus Back     alignment and domain information
>COG1692 Calcineurin-like phosphoesterase [General function prediction only] Back     alignment and domain information
>KOG0374|consensus Back     alignment and domain information
>KOG2863|consensus Back     alignment and domain information
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family Back     alignment and domain information
>KOG0371|consensus Back     alignment and domain information
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C Back     alignment and domain information
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain Back     alignment and domain information
>KOG3818|consensus Back     alignment and domain information
>KOG0375|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
4fbk_A472 Crystal Structure Of A Covalently Fused Nbs1-Mre11 1e-80
3t1i_A 431 Crystal Structure Of Human Mre11: Understanding Tum 2e-80
4fbw_A 417 Crystal Structure Of An Unfused Mre11-Nbs1 Complex 3e-80
4fcx_B404 S.Pombe Mre11 Apoenzym Length = 404 6e-80
3dsc_A349 Crystal Structure Of P. Furiosus Mre11 Dna Synaptic 4e-13
1ii7_A333 Crystal Structure Of P. Furiosus Mre11 With Mangane 4e-13
4hd0_A339 Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BU 5e-13
3dsd_A349 Crystal Structure Of P. Furiosus Mre11-H85s Bound T 4e-12
1s8e_A333 Crystal Structure Of Mre11-3 Length = 333 6e-11
>pdb|4FBK|A Chain A, Crystal Structure Of A Covalently Fused Nbs1-Mre11 Complex With One Manganese Ion Per Active Site Length = 472 Back     alignment and structure 
Iteration: 1

 Score =  296 bits (758), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/319 (46%), Positives = 209/319 (65%), Gaps = 8/319 (2%)
Query: 1   MESQDSEEVKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQE 60
            + + S++V          NTIRI+I+SD H+GY E D  RGNDSFVSF EILE A +++
Sbjct: 56  FQKKASQKVDGSAGSAGSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERD 115
Query: 61  VDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKL-----VMCNDHV 115
           VDM+LLGGD+FH NKPS   L + L +LR  C+GD+   ++++SD  L      +CN  +
Sbjct: 116 VDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCN--I 173
Query: 116 NYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLII 175
           NY+DPN+N+++PVF+I+GNHDDPSG    +ALDI+  +GLVNYFG+    + I ++P+++
Sbjct: 174 NYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILL 233
Query: 176 QKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNI 234
           QK  TK+A++G+  V+DERL +  + NKVK+++P   +D  + +L +HQN         +
Sbjct: 234 QKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYL 293
Query: 235 AEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMC 294
            E  I  F+ F+LWGHEHEC I   YN  Q+F V QPGS +ATSL  GE   K CGIL  
Sbjct: 294 PESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNI 353
Query: 295 NKQNYKLVPRSLETVRPFV 313
             +++ L    L TVRPF+
Sbjct: 354 TGKDFHLEKIRLRTVRPFI 372
>pdb|3T1I|A Chain A, Crystal Structure Of Human Mre11: Understanding Tumorigenic Mutations Length = 431 Back     alignment and structure
>pdb|4FBW|A Chain A, Crystal Structure Of An Unfused Mre11-Nbs1 Complex With Two Manganese Ions Per Active Site Length = 417 Back     alignment and structure
>pdb|4FCX|B Chain B, S.Pombe Mre11 Apoenzym Length = 404 Back     alignment and structure
>pdb|3DSC|A Chain A, Crystal Structure Of P. Furiosus Mre11 Dna Synaptic Complex Length = 349 Back     alignment and structure
>pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 With Manganese And Damp Length = 333 Back     alignment and structure
>pdb|4HD0|A Chain A, Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BUT BLOCKS DNA Double-Strand Break Repair Length = 339 Back     alignment and structure
>pdb|3DSD|A Chain A, Crystal Structure Of P. Furiosus Mre11-H85s Bound To A Branched Dna And Manganese Length = 349 Back     alignment and structure
>pdb|1S8E|A Chain A, Crystal Structure Of Mre11-3 Length = 333 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
4fbk_A472 DNA repair and telomere maintenance protein NBS1, 4e-95
3t1i_A 431 Double-strand break repair protein MRE11A; DNA rep 2e-94
4fbw_A 417 DNA repair protein RAD32; DNA double-strand break 1e-93
1ii7_A333 MRE11 nuclease; RAD50, DNA double-strand break rep 3e-26
3av0_A 386 DNA double-strand break repair protein MRE11; DNA 3e-25
2q8u_A336 Exonuclease, putative; structural genomics, joint 1e-18
3tho_B 379 Exonuclease, putative; adenosine triphosphate, bac 1e-17
2yvt_A260 Hypothetical protein AQ_1956; structural genomics, 1e-07
3ib7_A330 ICC protein; metallophosphoesterase, alpha-beta fo 6e-06
1uf3_A228 Hypothetical protein TT1561; metallo-dependent pho 7e-06
2xmo_A443 LMO2642 protein; phosphodiesterase, hydrolase; 1.7 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
3d03_A274 Phosphohydrolase; glycerophosphodiesterase, metall 2e-04
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A* Length = 472 Back     alignment and structure
 Score =  288 bits (738), Expect = 4e-95
 Identities = 145/317 (45%), Positives = 208/317 (65%), Gaps = 4/317 (1%)

Query: 1   MESQDSEEVKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQE 60
            + + S++V          NTIRI+I+SD H+GY E D  RGNDSFVSF EILE A +++
Sbjct: 56  FQKKASQKVDGSAGSAGSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERD 115

Query: 61  VDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCN---DHVNY 117
           VDM+LLGGD+FH NKPS   L + L +LR  C+GD+   ++++SD  L   +    ++NY
Sbjct: 116 VDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINY 175

Query: 118 MDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQK 177
           +DPN+N+++PVF+I+GNHDDPSG    +ALDI+  +GLVNYFG+    + I ++P+++QK
Sbjct: 176 LDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQK 235

Query: 178 NETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAE 236
             TK+A++G+  V+DERL +  + NKVK+++P   +D  + +L +HQN         + E
Sbjct: 236 GFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPE 295

Query: 237 DSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNK 296
             I  F+ F+LWGHEHEC I   YN  Q+F V QPGS +ATSL  GE   K CGIL    
Sbjct: 296 SFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITG 355

Query: 297 QNYKLVPRSLETVRPFV 313
           +++ L    L TVRPF+
Sbjct: 356 KDFHLEKIRLRTVRPFI 372
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens} Length = 431 Back     alignment and structure
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B* Length = 417 Back     alignment and structure
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A Length = 333 Back     alignment and structure
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A* Length = 386 Back     alignment and structure
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A Length = 336 Back     alignment and structure
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C Length = 379 Back     alignment and structure
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 Length = 260 Back     alignment and structure
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Length = 330 Back     alignment and structure
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Length = 228 Back     alignment and structure
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Length = 443 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Length = 274 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
3t1i_A 431 Double-strand break repair protein MRE11A; DNA rep 100.0
4fbk_A472 DNA repair and telomere maintenance protein NBS1, 100.0
4fbw_A 417 DNA repair protein RAD32; DNA double-strand break 100.0
2q8u_A336 Exonuclease, putative; structural genomics, joint 100.0
3tho_B 379 Exonuclease, putative; adenosine triphosphate, bac 99.98
1ii7_A333 MRE11 nuclease; RAD50, DNA double-strand break rep 99.98
3av0_A 386 DNA double-strand break repair protein MRE11; DNA 99.97
3ib7_A330 ICC protein; metallophosphoesterase, alpha-beta fo 99.9
3d03_A274 Phosphohydrolase; glycerophosphodiesterase, metall 99.89
1uf3_A228 Hypothetical protein TT1561; metallo-dependent pho 99.84
2yvt_A260 Hypothetical protein AQ_1956; structural genomics, 99.82
2xmo_A 443 LMO2642 protein; phosphodiesterase, hydrolase; 1.7 99.8
1z2w_A192 Vacuolar protein sorting 29; VPS29, retromer, phos 99.78
2nxf_A322 Putative dimetal phosphatase; dinuclear metal cent 99.76
2a22_A215 Vacuolar protein sorting 29; alpha-beta-BETA-alpha 99.75
2kkn_A178 Uncharacterized protein; protein phosphatase 2A ho 99.73
1ute_A313 Protein (II purple acid phosphatase); tartrate res 99.72
1s3l_A190 Hypothetical protein MJ0936; phosphodiesterase, nu 99.71
1su1_A208 Hypothetical protein YFCE; structural genomics, ph 99.66
1nnw_A252 Hypothetical protein; structural genomics, PSI, pr 99.65
3qfm_A270 SAPH, putative uncharacterized protein; sandwich f 99.64
3ck2_A176 Conserved uncharacterized protein (predicted phosp 99.63
3rqz_A246 Metallophosphoesterase; PSI-biology, midwest cente 99.59
3rl5_A296 Metallophosphoesterase mpped2; alpha-beta fold, me 99.57
3tgh_A342 Glideosome-associated protein 50; phosphatase fold 99.56
1xm7_A195 Hypothetical protein AQ_1665; structural genomics, 99.43
1xzw_A426 Purple acid phosphatase; hydrolase; HET: NAG FUC M 99.28
2qfp_A424 Purple acid phosphatase; binuclear, Fe-Zn, hydrola 99.23
1hp1_A 516 5'-nucleotidase; metallophosphatase, dinuclear, me 99.18
3qfk_A 527 Uncharacterized protein; structural genomics, cent 99.15
3ive_A 509 Nucleotidase; structural genomics, PSI-2, protein 99.12
2z1a_A 552 5'-nucleotidase; metal-binding, nucleotide-binding 99.04
2wdc_A 562 SOXB, sulfur oxidation protein SOXB; sulfur-sulfur 99.03
4h2g_A 546 5'-nucleotidase; dimer, hydrolase, phosphatase, ex 99.01
3jyf_A339 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- n 98.98
3gve_A341 YFKN protein; alpha-beta-BETA-alpha sandwich, stru 98.92
3ztv_A 579 NAD nucleotidase, NADN; hydrolase, NAD pyrophospha 98.9
4h1s_A 530 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo 98.64
3c9f_A 557 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, p 98.57
1g5b_A221 Serine/threonine protein phosphatase; bacteriophag 98.48
2z06_A252 Putative uncharacterized protein TTHA0625; metal b 98.46
2yeq_A 527 Apased, PHOD, alkaline phosphatase D; hydrolase, p 98.42
1t71_A281 Phosphatase, conserved HYPO; crystal, X-RAY crysta 98.42
2qjc_A262 Diadenosine tetraphosphatase, putative; putative d 98.38
2dfj_A280 Diadenosinetetraphosphatase; helices and strands m 98.29
1t70_A255 Phosphatase; crystal, X-RAY crystallography, struc 98.25
2ie4_C309 PP2A-alpha;, serine/threonine-protein phosphatase 98.13
3h63_A315 Serine/threonine-protein phosphatase 5; metalloenz 98.12
2z72_A342 Protein-tyrosine-phosphatase; cold-active enzyme, 98.09
1fjm_A330 Protein serine/threonine phosphatase-1 (alpha ISO 98.05
1wao_1477 Serine/threonine protein phosphatase 5; hydrolase, 98.02
3icf_A335 PPT, serine/threonine-protein phosphatase T; IRO m 97.98
3e7a_A299 PP-1A, serine/threonine-protein phosphatase PP1-al 97.98
3ll8_A357 Serine/threonine-protein phosphatase 2B catalytic 97.87
1aui_A 521 Calcineurin, serine/threonine phosphatase 2B; hydr 97.81
3e0j_A476 DNA polymerase subunit delta-2; DNA polymerase del 97.51
3flo_A460 DNA polymerase alpha subunit B; protein-protein co 95.44
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.7e-47  Score=361.44  Aligned_cols=298  Identities=48%  Similarity=0.877  Sum_probs=246.9

Q ss_pred             CCCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCC
Q psy11941         16 YDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGD   95 (313)
Q Consensus        16 ~~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~   95 (313)
                      .+..++|||+|+||+|+|.......+..+...+|+++++.++++++|+||++||+||...++.+++..+.+.|++++.++
T Consensus        27 ~~~~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~~  106 (431)
T 3t1i_A           27 LDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGD  106 (431)
T ss_dssp             CCGGGEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBCS
T ss_pred             CCCCCCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhccC
Confidence            36677999999999999998777778889999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeeeccCccccccc---CCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeec
Q psy11941         96 RSVFIDVISDPKLVMCN---DHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNP  172 (313)
Q Consensus        96 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  172 (313)
                      ..+++|+++|.+.+|.+   ..|||+||+++.++|||+|+||||.+.+.+..++++++...++++++++....+.+.+.|
T Consensus       107 ~~~~~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~g~~~l~~~~lL~~~glv~~fg~~~~~e~i~~~P  186 (431)
T 3t1i_A          107 RPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISP  186 (431)
T ss_dssp             SCCCCEECSCC------------------CCBCSCEEECCCSSSCCBTTTTBCHHHHHHHHTSEEECCCCCCSSCEEECC
T ss_pred             CcccceeccchhhccccccccccccccccccCCCcEEEEccCCCCcccccccCHHHHhccCCcEEEECCcCcccceeeEE
Confidence            99999999998777764   579999999999999999999999998766677889999999999998877777777889


Q ss_pred             EEEeeCCeEEEEEecCCCchHHHHHHhhhcchhccCCC-CCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCc
Q psy11941        173 LIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPT-DDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHE  251 (313)
Q Consensus       173 ~~l~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~  251 (313)
                      +.+++++.++.+||+||..+.++.....+..++++.|. ..++.++|+++|+.....+...+++..+++.++|||++||+
T Consensus       187 v~l~~g~~~valyGl~~~~~~~l~~~~~~~~v~~~~p~~~~~~~~~Ilv~H~~~~~~g~~~~ip~~l~~~~~Dyv~lGH~  266 (431)
T 3t1i_A          187 VLLQKGSTKIALYGLGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHE  266 (431)
T ss_dssp             EEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEECCCSSCGGGEEEEEEECSCCSCSSSSSSCCGGGSCTTCCEEEECSC
T ss_pred             EEEecCCEeEEEEeCCCCCHHHHhhhhccccceeecccccCCCceEEEEECCCccCCCccccCCHhHhhCCCCEEEeccc
Confidence            99999999999999999999888877665555555553 12345899999998876666678888888889999999999


Q ss_pred             cCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCCCCCCC
Q psy11941        252 HECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV  313 (313)
Q Consensus       252 H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~r~~~  313 (313)
                      |.++..+..+..++.+++||||+.+++|++++.++++|++++++++.++++++|++++|||+
T Consensus       267 H~~~~~~~~~~~~~~~i~yPGS~~~~s~~e~E~~~k~~~lvei~~~~~~ve~i~l~~~R~f~  328 (431)
T 3t1i_A          267 HECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQFF  328 (431)
T ss_dssp             CSCEEEEEECTTTCCEEEECCCSSCCSCCHHHHSCCEEEEEEEETTEEEEEEEECSSSCCEE
T ss_pred             ccccccccccCCCCEEEEeCCCCcccCcCcccCCCCEEEEEEEECCEEEEEEEECCCcceEE
Confidence            99998643223356799999999999999765578999999999999999999999999984
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A* Back     alignment and structure
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B* Back     alignment and structure
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A Back     alignment and structure
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C Back     alignment and structure
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A Back     alignment and structure
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A* Back     alignment and structure
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Back     alignment and structure
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Back     alignment and structure
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Back     alignment and structure
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 Back     alignment and structure
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Back     alignment and structure
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A Back     alignment and structure
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Back     alignment and structure
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Back     alignment and structure
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Back     alignment and structure
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A* Back     alignment and structure
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Back     alignment and structure
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 Back     alignment and structure
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A Back     alignment and structure
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A* Back     alignment and structure
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7 Back     alignment and structure
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0 Back     alignment and structure
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A* Back     alignment and structure
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7} Back     alignment and structure
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8 Back     alignment and structure
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1 Back     alignment and structure
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A* Back     alignment and structure
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A Back     alignment and structure
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp} Back     alignment and structure
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A* Back     alignment and structure
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2 Back     alignment and structure
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A Back     alignment and structure
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A* Back     alignment and structure
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp} Back     alignment and structure
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A* Back     alignment and structure
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens} Back     alignment and structure
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2 Back     alignment and structure
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3 Back     alignment and structure
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A Back     alignment and structure
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis} Back     alignment and structure
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9 Back     alignment and structure
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei} Back     alignment and structure
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A} Back     alignment and structure
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9 Back     alignment and structure
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C* Back     alignment and structure
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A Back     alignment and structure
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A Back     alignment and structure
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3 Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A* Back     alignment and structure
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A Back     alignment and structure
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3 Back     alignment and structure
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens} Back     alignment and structure
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 313
d1ii7a_333 d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus 8e-30
d2yvta1257 d.159.1.6 (A:4-260) Uncharacterized protein Aq_195 5e-16
d2hy1a1256 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide pho 3e-06
d1uf3a_228 d.159.1.6 (A:) Hypothetical protein TT1561 {Thermu 7e-06
d2nxfa1320 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homo 4e-05
d3d03a1271 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ 6e-05
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 333 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DNA double-strand break repair nuclease
domain: Mre11
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  113 bits (283), Expect = 8e-30
 Identities = 61/299 (20%), Positives = 106/299 (35%), Gaps = 45/299 (15%)

Query: 22  IRIMIASDIHLGYLETDR-ERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
           ++    +DIHLGY +  + +R  +   +F+  LE A+ + VD +L+ GDLFH ++PSP T
Sbjct: 1   MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGT 60

Query: 81  LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
           LKK +  L+                                   S+PVF I GNHD    
Sbjct: 61  LKKAIALLQIPK------------------------------EHSIPVFAIEGNHDRTQR 90

Query: 141 PELVAALDIVSNSGLVNYFGKCTNLNE--------ITLNPLIIQKNETKVAIFGLGYVKD 192
               + L+++ + GLV   G      E        +     +++     + I G+ Y+  
Sbjct: 91  GP--SVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSS 148

Query: 193 ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
                  +  K  +    +   +++  V   +         I    +P  + +   GH H
Sbjct: 149 AWFEANKEILKRLFRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIH 208

Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRP 311
           +              V  PGS         E   +  GI    +         +E  +P
Sbjct: 209 KRYETSYSG----SPVVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDFKP 263
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Length = 257 Back     information, alignment and structure
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 256 Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Length = 228 Back     information, alignment and structure
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Length = 320 Back     information, alignment and structure
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Length = 271 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
d1ii7a_333 Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 99.97
d2hy1a1256 Rv0805 cyclic nucleotide phosphodiesterase {Mycoba 99.88
d3d03a1271 Glycerophosphodiesterase GpdQ {Enterobacter aeroge 99.87
d2yvta1257 Uncharacterized protein Aq_1956 {Aquifex aeolicus 99.86
d1uf3a_228 Hypothetical protein TT1561 {Thermus thermophilus 99.85
d2nxfa1320 Uncharacterized C17orf48 homolog zgc:64213 {Zebraf 99.68
d1s3la_165 Putative phosphodiesterase MJ0936 {Methanococcus j 99.68
d1z2wa1182 Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus 99.67
d1nnwa_251 Hypothetical protein PF1291 {Archaeon Pyrococcus f 99.64
d2a22a1193 Vacuolar protein sorting 29, VPS29 {Cryptosporidiu 99.63
d1su1a_184 Phosphodiesterase yfcE {Escherichia coli [TaxId: 5 99.62
d3ck2a1173 Uncharacterized protein SP1879 {Streptococcus pneu 99.62
d1utea_302 Mammalian purple acid phosphatase {Pig (Sus scrofa 99.55
d2qfra2312 Plant purple acid phosphatase, catalytic domain {K 99.26
d1usha2337 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term 99.08
d2z1aa2302 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term 98.84
d3c9fa2322 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term 98.8
d1xm7a_188 Hypothetical protein aq_1666 {Aquifex aeolicus [Ta 98.19
d1g5ba_219 lambda ser/thr protein phosphatase {Bacteriophage 98.12
d3c5wc1288 Protein phosphatase 2A catalytic subunit alpha iso 96.61
d1jk7a_294 Protein phosphatase-1 (PP-1) {Human (Homo sapiens) 96.57
d1s95a_324 Serine/threonine protein phosphatase 5, PP5 {Human 96.44
d1auia_ 473 Protein phosphatase-2B (PP-2B, calcineurin A subun 96.4
d2z06a1252 Hypothetical protein TTHA0625 {Thermus thermophilu 93.75
d1t70a_255 Putative phosphatase DR1281 {Deinococcus radiodura 92.33
d1t71a_281 Hypothetical protein MPN349 {Mycoplasma pneumoniae 88.93
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DNA double-strand break repair nuclease
domain: Mre11
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.97  E-value=1.3e-31  Score=243.85  Aligned_cols=248  Identities=27%  Similarity=0.377  Sum_probs=170.7

Q ss_pred             EEEEEeeccccCcccC-CcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941         22 IRIMIASDIHLGYLET-DRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI  100 (313)
Q Consensus        22 mkilh~SD~Hlg~~~~-~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  100 (313)
                      |||+|+||+|||.... ...+.++.+.+|+++++.|+++++|+||++||+||...++.+++..+.+.+.++.        
T Consensus         1 Mkilh~SDlHlG~~~~~~~~~~~~~~~~l~~iv~~a~~~~~D~vli~GDlfd~~~~~~~~~~~~~~~~~~l~--------   72 (333)
T d1ii7a_           1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPK--------   72 (333)
T ss_dssp             CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHH--------
T ss_pred             CEEEEEecCcCCCCCcCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHhhHH--------
Confidence            8999999999998643 4567788899999999999999999999999999998888899999988888765        


Q ss_pred             eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEeccccc-CCcee-------eec
Q psy11941        101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTN-LNEIT-------LNP  172 (313)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~-------~~~  172 (313)
                                            ..++||++|+||||.+....  +.+..+...+++.+++.... .....       ..+
T Consensus        73 ----------------------~~~i~v~~i~GNHD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (333)
T d1ii7a_          73 ----------------------EHSIPVFAIEGNHDRTQRGP--SVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGE  128 (333)
T ss_dssp             ----------------------TTTCCEEEECCTTTCCSSSC--CHHHHHHHTTSCEECEEESSCCCSSSEEEEECTTSC
T ss_pred             ----------------------hcCCcEEEeCCCCccccchh--hHHHHHHhCCceEEccCcccccccceecccccCcce
Confidence                                  46789999999999987533  45677777776655432211 11000       011


Q ss_pred             EEEeeCCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCC---CC--cCccccccCCCcccEEE
Q psy11941        173 LIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPER---GT--VKNIAEDSIPSFFHFIL  247 (313)
Q Consensus       173 ~~l~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~---~~--~~~~~~~~~~~~~d~v~  247 (313)
                      ..+........+.++++.......+.......  .   ...+...++++|+.....   ..  ...........++|||+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~  203 (333)
T d1ii7a_         129 YLVKGVYKDLEIHGMKYMSSAWFEANKEILKR--L---FRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYA  203 (333)
T ss_dssp             EEEEEEETTEEEEEECCCCHHHHHSSTTHHHH--H---CCCCSSEEEEEECCBHHHHHTTTCCCCSBCGGGSCTTCSEEE
T ss_pred             eEeecccCcceeccccchhHHHHHHHHhhhhh--h---cCCCccceEEEeeccccccccccccceecccccCccccceEE
Confidence            22222223356778888776544332211111  0   123458899999976421   11  11122344557899999


Q ss_pred             eCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCC-----------ceeEEEEeCCCCCCC
Q psy11941        248 WGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQ-----------NYKLVPRSLETVRPF  312 (313)
Q Consensus       248 ~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~-----------~~~~~~i~l~~~r~~  312 (313)
                      +||+|.++....    ++..++|||||.+++|+|.+ ..+|+.++++..+           ..+.++++++. ||+
T Consensus       204 lGH~H~~~~~~~----~~~~i~y~GS~~~~~~~E~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  273 (333)
T d1ii7a_         204 LGHIHKRYETSY----SGSPVVYPGSLERWDFGDYE-VRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIKV-RPF  273 (333)
T ss_dssp             EESCSSCEEEEE----TTEEEEECCCSSCCSGGGCS-EEEEECSSSEEEEECCCCEEEEEETTEEEEEECCC-CCE
T ss_pred             ecCcccceEEee----CCeEEEEeCCceeecccccc-ccCceEEEEEecCcccccceEEcccCceeEEECCc-cce
Confidence            999999987632    45679999999999999864 5677776666642           23677888874 776
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Back     information, alignment and structure
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Candida albicans [TaxId: 5476]} Back     information, alignment and structure
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]} Back     information, alignment and structure
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]} Back     information, alignment and structure
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure