Psyllid ID: psy12002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MTLFQGSDNHDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC
Secondary Structure (PSIPRED)
cccccccccHHHHHHcEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHccEEEEEccccHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHHHHEccccccHHHHHHHHHHcccHHHHHHHHHHccHHHHccHHHHHHHHcc
Coil and Loop (DISEMBL)
mtlfqgsdnhdlikhnlvvfrggegalqvlpplidvipesrLNLVIYHLKQAWDLyltmdtspESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGkenrlnvpwakcalgQYKEAEEMFLLVQNEGLKNDYVYISHLTKC
Flexible Loop (DISEMBL)
mtlfqgsdnhdliKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQneglkndyvyishltkc
Low Complexity Region (SEG)
MTLFQGSDNHDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYRRakfwfafkafDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC
Disordered region (IsUnstruct)
*********HDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHL***
Disordered Region (DISOPRED)
***********LIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC
Disordered Region (DISEMBL)
MTLFQGSDNHDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC
Disordered Region (DISPRO)
*TLFQGSDNHDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLFQGSDNHDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQAWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
A4III8	554	Tetratricopeptide repeat	yes	N/A	0.939	0.277	0.405	2e-25
Q8BS45	554	Tetratricopeptide repeat	yes	N/A	0.939	0.277	0.383	9e-23
Q5U2N8	554	Tetratricopeptide repeat	yes	N/A	0.939	0.277	0.383	9e-23
A0AVF1	554	Tetratricopeptide repeat	no	N/A	0.939	0.277	0.377	2e-22
Q5PR66	557	Tetratricopeptide repeat	yes	N/A	0.939	0.276	0.388	2e-22
Q4R7Z9	554	Tetratricopeptide repeat	N/A	N/A	0.939	0.277	0.377	2e-22

>sp|A4III8|TTC26_XENTR Tetratricopeptide repeat protein 26 OS=Xenopus tropicalis GN=ttc26 PE=2 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 99/180 (55%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LIKHNLVVFR GEGALQVLPPL+DVIPE+RLNLVIY+L+Q     A++L   ++ S   
Sbjct: 258 ELIKHNLVVFRAGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAFNLIKDLEPSTPQ 317

Query: 66  LQILQLIANESY-----RRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N S       R     A + F ++       +   G++   +C  L++    
Sbjct: 318 EYILKGVVNASLGQELGSRDHLKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLRQFDD 377

Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                               N   AK A+G YKEAEE+FLL+QNE +KNDY Y+S L +C
Sbjct: 378 VLIYLNSIKSYFYNDDTFNFNYAQAKAAVGNYKEAEEVFLLIQNEKIKNDYTYLSWLARC 437

Xenopus tropicalis (taxid: 8364)

>sp|Q8BS45|TTC26_MOUSE Tetratricopeptide repeat protein 26 OS=Mus musculus GN=Ttc26 PE=2 SV=1

 Score =  105 bits (263), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 97/180 (53%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q     A++L   ++ +   
Sbjct: 258 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQ 317

Query: 66  LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N     E   R     A + F ++       +   G++   +C  L++    
Sbjct: 318 EYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDD 377

Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                               N   AK A G   E EE+FLL+Q+E LKNDY+Y+S L +C
Sbjct: 378 VLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQSEKLKNDYIYLSWLARC 437

Mus musculus (taxid: 10090)

>sp|Q5U2N8|TTC26_RAT Tetratricopeptide repeat protein 26 OS=Rattus norvegicus GN=Ttc26 PE=2 SV=1

 Score =  105 bits (263), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 97/180 (53%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q     A++L   ++ +   
Sbjct: 258 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQ 317

Query: 66  LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N     E   R     A + F ++       +   G++   +C  L++    
Sbjct: 318 EYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDD 377

Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                               N   AK A G   E EE+FLL+Q+E LKNDY+Y+S L +C
Sbjct: 378 VLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQSEKLKNDYIYLSWLARC 437

Rattus norvegicus (taxid: 10116)

>sp|A0AVF1|TTC26_HUMAN Tetratricopeptide repeat protein 26 OS=Homo sapiens GN=TTC26 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 96/180 (53%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q     A++L   ++ +   
Sbjct: 258 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQ 317

Query: 66  LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N     E   R     A + F ++       +   G++   +C  L++    
Sbjct: 318 EYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDD 377

Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                               N   AK A G   E EE FLL+Q+E +KNDY+Y+S L +C
Sbjct: 378 VLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLSWLARC 437

Homo sapiens (taxid: 9606)

>sp|Q5PR66|TTC26_DANRE Tetratricopeptide repeat protein 26 OS=Danio rerio GN=ttc26 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 97/180 (53%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LI+HNLVVFRGG GALQVLPPLIDVI E+RLNLVIY+L+Q     A+ L   ++ +   
Sbjct: 261 ELIQHNLVVFRGGGGALQVLPPLIDVISEARLNLVIYYLRQDDIQEAYKLIKDLEPTTPQ 320

Query: 66  LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N     E   R     A + F ++       +   G++   +C  L++    
Sbjct: 321 EYILKGVVNAALGQEIGSRDHLKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFED 380

Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                               N   AK ALG Y+EAEE+FLL+QNE +K+DYV+ S L +C
Sbjct: 381 VLIYLNSVKSYFYNDDTFSFNYAQAKAALGNYREAEELFLLIQNEKIKSDYVFQSWLARC 440

Danio rerio (taxid: 7955)

>sp|Q4R7Z9|TTC26_MACFA Tetratricopeptide repeat protein 26 OS=Macaca fascicularis GN=TTC26 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 96/180 (53%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q     A++L   ++ +   
Sbjct: 258 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQ 317

Query: 66  LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N     E   R     A + F ++       +   G++   +C  L++    
Sbjct: 318 EYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDD 377

Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                               N   AK A G   E EE FLL+Q+E +KNDY+Y+S L +C
Sbjct: 378 VLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLSWLARC 437

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
291230109	532	PREDICTED: CG4525-like [Saccoglossus kow	0.902	0.278	0.436	8e-26
443696469	555	hypothetical protein CAPTEDRAFT_153891 [	0.939	0.277	0.411	3e-24
156717722	554	tetratricopeptide repeat protein 26 [Xen	0.939	0.277	0.405	8e-24
196013888	558	hypothetical protein TRIADDRAFT_60813 [T	0.939	0.275	0.422	1e-23
390362429	555	PREDICTED: tetratricopeptide repeat prot	0.945	0.279	0.403	3e-23
449276145	553	Tetratricopeptide repeat protein 26 [Col	0.939	0.278	0.388	5e-23
348520991	557	PREDICTED: tetratricopeptide repeat prot	0.926	0.272	0.406	6e-23
405968330	2670	Tetratricopeptide repeat protein 26 [Cra	0.932	0.057	0.385	1e-22
260823860	556	hypothetical protein BRAFLDRAFT_60331 [B	0.932	0.275	0.407	1e-22
403276523	536	PREDICTED: tetratricopeptide repeat prot	0.853	0.261	0.409	1e-22

>gi|291230109|ref|XP_002735012.1| PREDICTED: CG4525-like [Saccoglossus kowalevskii]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 96/165 (58%), Gaps = 17/165 (10%)

Query: 10  HDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPE 64
           +DLIKHNLVVFRGGEGALQVLPPLIDVIPE+RLNLVIY+LKQ     A+ L   ++ +  
Sbjct: 257 NDLIKHNLVVFRGGEGALQVLPPLIDVIPEARLNLVIYYLKQDDVQEAYSLIKDLEPTTP 316

Query: 65  SLQILQLIANESY---RRAKFWFAFKAFDM--LERLEPLAEYWEGKRGACAGLMQMIMAG 119
              IL+ + N S    + + +++   +F+    +    +  Y E +              
Sbjct: 317 QEYILKGVVNASLGQEQGSSYFYNDDSFNFNYAQAKASVGNYKEAEES-------YFFND 369

Query: 120 KENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
           +    N   AK   G YKEAEE+FLL+QNE  KNDY Y+S L +C
Sbjct: 370 ESFNFNYGQAKATAGNYKEAEEIFLLIQNEKFKNDYTYLSWLARC 414

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|443696469|gb|ELT97163.1| hypothetical protein CAPTEDRAFT_153891 [Capitella teleta]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 100/180 (55%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           DLIKHNLVVFRGGEGALQVLPPLIDVIPE+RLNLVIY+LKQ     A++L   ++ +   
Sbjct: 258 DLIKHNLVVFRGGEGALQVLPPLIDVIPEARLNLVIYYLKQDDVAEAYNLIKDLEPTTPQ 317

Query: 66  LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N     E   R     A + F ++       +   G++   +C  L++    
Sbjct: 318 EYILKGVVNAALGQEQGSREHLKIAQQYFQLVGGSASECDTIPGRQCMASCFYLLKQFED 377

Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                               N   AK  +G +KEAEE+FLL+Q++ LKNDYVY+S L +C
Sbjct: 378 VLIYLNSIKSYFYNDDTFNFNYAQAKATVGNFKEAEEVFLLIQSDKLKNDYVYLSWLARC 437

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|156717722|ref|NP_001096401.1| tetratricopeptide repeat protein 26 [Xenopus (Silurana) tropicalis] gi|158513833|sp|A4III8.1|TTC26_XENTR RecName: Full=Tetratricopeptide repeat protein 26; Short=TPR repeat protein 26 gi|134025630|gb|AAI36036.1| ttc26 protein [Xenopus (Silurana) tropicalis]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 99/180 (55%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LIKHNLVVFR GEGALQVLPPL+DVIPE+RLNLVIY+L+Q     A++L   ++ S   
Sbjct: 258 ELIKHNLVVFRAGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAFNLIKDLEPSTPQ 317

Query: 66  LQILQLIANESY-----RRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N S       R     A + F ++       +   G++   +C  L++    
Sbjct: 318 EYILKGVVNASLGQELGSRDHLKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLRQFDD 377

Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                               N   AK A+G YKEAEE+FLL+QNE +KNDY Y+S L +C
Sbjct: 378 VLIYLNSIKSYFYNDDTFNFNYAQAKAAVGNYKEAEEVFLLIQNEKIKNDYTYLSWLARC 437

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|196013888|ref|XP_002116804.1| hypothetical protein TRIADDRAFT_60813 [Trichoplax adhaerens] gi|190580522|gb|EDV20604.1| hypothetical protein TRIADDRAFT_60813 [Trichoplax adhaerens]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 100/180 (55%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           DLIKHNLVVFRGGEGALQVLPPLIDVIPE+RLNLVIY+LKQ     A+ L   ++ +   
Sbjct: 261 DLIKHNLVVFRGGEGALQVLPPLIDVIPEARLNLVIYYLKQDDIVEAYKLIKDLEPTIPQ 320

Query: 66  LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N     E   R     A + F ++       +   G++   AC  L++    
Sbjct: 321 EYILKGVVNAALGQEQQSREHLRIAQQYFQLVGGSASECDTIPGRQCMAACFFLLKQFED 380

Query: 116 -------IMAGKEN----RLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                  I +   N      N   AK   G YKEAEE+FL++Q+E +KNDY Y+S L +C
Sbjct: 381 VLIYLNSIKSYFYNDDVFNFNYAQAKAVAGNYKEAEEIFLMIQSEKIKNDYTYLSWLARC 440

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|390362429|ref|XP_003730152.1| PREDICTED: tetratricopeptide repeat protein 26-like [Strongylocentrotus purpuratus]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 98/181 (54%), Gaps = 26/181 (14%)

Query: 10  HDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPE 64
            DLIKHNLVVFR GEGALQ+LPPLIDVIPE+RLNLVIY+LKQ     A++L   +D +  
Sbjct: 256 QDLIKHNLVVFRAGEGALQILPPLIDVIPEARLNLVIYYLKQDDVNEAYNLIKNLDPTTP 315

Query: 65  SLQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQMI- 116
              IL+ + N     E   R     A + F ++       +   G++   +C  +++   
Sbjct: 316 QEYILKGVVNAALGQEQGSREHLKIAQQYFQLVGGSASECDTIPGRQCMASCFFILKQFD 375

Query: 117 ------------MAGKEN-RLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTK 163
                           +N   N   AK   G YKEAEE+F+L+QN+  K DYVY+S L K
Sbjct: 376 DVLIYLNSIKSYFYNDDNFNFNYAQAKAMAGNYKEAEEIFMLIQNDRHKQDYVYLSWLAK 435

Query: 164 C 164
           C
Sbjct: 436 C 436

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|449276145|gb|EMC84808.1| Tetratricopeptide repeat protein 26 [Columba livia]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 105/180 (58%), Gaps = 26/180 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q     A++L   ++ +   
Sbjct: 257 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTAPQ 316

Query: 66  LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQ---- 114
             IL+ + N     E+  R     A + F ++       +   G++   +C  L++    
Sbjct: 317 EYILKGVVNAALGYETGSRDHLKIAQQFFQLVGESASECDTIPGRQCMSSCFFLLRQFGN 376

Query: 115 --MIMAGKEN--------RLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
             M +   ++          N   AK A+G + EAEE+FLL+Q+E +KND+VY+S L +C
Sbjct: 377 VLMYLNSVKSYFYNDDTFNFNYAQAKAAMGNFSEAEEVFLLIQSEKIKNDFVYLSWLARC 436

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348520991|ref|XP_003448010.1| PREDICTED: tetratricopeptide repeat protein 26-like [Oreochromis niloticus]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 102/182 (56%), Gaps = 30/182 (16%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LI+HNLVVFRGGEGALQVLPPLIDVIPE+RLNLVIY+L+Q     A++  L  D  P +
Sbjct: 260 ELIRHNLVVFRGGEGALQVLPPLIDVIPEARLNLVIYYLRQDDVEEAYN--LIQDLVPTT 317

Query: 66  LQ--ILQLIANESY-----RRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM- 115
            Q  IL+ + N +       R     A + F ++       +   G++   +C  L++  
Sbjct: 318 PQEYILKGVVNAALGQKIGSRDHLKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQF 377

Query: 116 -------------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLT 162
                                 N   AK A+G Y+EAEE+FLL+Q+E +KNDYVY+S L 
Sbjct: 378 EDVLIYLNSVKGYFYNDDTFNFNYAQAKAAIGNYREAEEVFLLIQSEKIKNDYVYLSWLA 437

Query: 163 KC 164
           +C
Sbjct: 438 RC 439

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405968330|gb|EKC33409.1| Tetratricopeptide repeat protein 26 [Crassostrea gigas]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 31/184 (16%)

Query: 11   DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
            DLIKHNLVVFRGGEGALQVLPPLIDV+PE+RLNLVIY+LKQ     A++L   ++ +   
Sbjct: 2368 DLIKHNLVVFRGGEGALQVLPPLIDVLPEARLNLVIYYLKQDDIAEAYNLIKDLEPTTPQ 2427

Query: 66   LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQ---- 114
              IL+ + N     E   R     A + F ++       +   G++   +C  L++    
Sbjct: 2428 EYILKGVVNAALGQEQGSREHLKIAQQYFQLVGGSASECDTIPGRQCMSSCFFLLKQFED 2487

Query: 115  --MIMAGKENRLNVPW-------------AKCALGQYKEAEEMFLLVQNEGLKNDYVYIS 159
              + +   +  +N+ +             AK A+G +KE+EE+FLL+Q+E +KNDY Y+S
Sbjct: 2488 VLIYLNSIKASINISYFYNDDSFNFNYAQAKAAVGNFKESEEVFLLIQSEKIKNDYTYLS 2547

Query: 160  HLTK 163
             L +
Sbjct: 2548 WLAR 2551

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|260823860|ref|XP_002606886.1| hypothetical protein BRAFLDRAFT_60331 [Branchiostoma floridae] gi|229292231|gb|EEN62896.1| hypothetical protein BRAFLDRAFT_60331 [Branchiostoma floridae]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 26/179 (14%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMDTSPES 65
           +LIKHNLVVFRGGEGALQVLPPLIDVIPE+RLNLVIY+L+Q     A++L   ++ +   
Sbjct: 259 ELIKHNLVVFRGGEGALQVLPPLIDVIPEARLNLVIYYLRQDDVSEAYNLIKDLEPTTPQ 318

Query: 66  LQILQLIAN-----ESYRRAKFWFAFKAFDMLERLEPLAEYWEGKR--GACAGLMQM--- 115
             IL+ + N     E+  R     A + F ++       +   G++   +C  L++    
Sbjct: 319 EYILKGVVNAALGQETGSREHLKIAQQYFQLVGGSASECDTIPGRQCMASCFFLLKQFED 378

Query: 116 -----------IMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTK 163
                               N   AK A+G +KEAEE+ LLVQNE LKNDY Y+S L +
Sbjct: 379 VLIYFNSIKSYFYNDDTFNFNYTQAKAAVGNFKEAEEVALLVQNEKLKNDYTYLSWLAR 437

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403276523|ref|XP_003929946.1| PREDICTED: tetratricopeptide repeat protein 26 [Saimiri boliviensis boliviensis]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 97/176 (55%), Gaps = 36/176 (20%)

Query: 11  DLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLTMD-TSPE 64
           +LI+HNLVVFRGGEGALQVLPPL+DVIPE+RLNLVIY+L+Q     A++L   ++ T+P+
Sbjct: 258 ELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQ 317

Query: 65  ------SLQILQLIANESYR---------RAKFWFAFKAF-DMLERLEPLAEYWEGKRGA 108
                 + Q  QL+   +            A  +F  K F D+L  L     Y+      
Sbjct: 318 RDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIF 377

Query: 109 CAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 164
                           N   AK A G   EAEE+FLL+Q+E +KNDY+Y+S L +C
Sbjct: 378 --------------NFNYAQAKAATGNTSEAEEVFLLIQSEKMKNDYIYLSWLARC 419

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
FB|FBgn0038358	570	CG4525 [Drosophila melanogaste	0.402	0.115	0.484	2.7e-27
UNIPROTKB|A4III8	554	ttc26 "Tetratricopeptide repea	0.439	0.129	0.555	1.7e-17
UNIPROTKB|F1NK58	555	TTC26 "Uncharacterized protein	0.426	0.126	0.542	1.9e-15
UNIPROTKB|F1SR18	553	TTC26 "Uncharacterized protein	0.426	0.126	0.585	1.7e-17
MGI|MGI:2444853	554	Ttc26 "tetratricopeptide repea	0.426	0.126	0.571	3.5e-17
RGD|1561363	554	Ttc26 "tetratricopeptide repea	0.426	0.126	0.571	3.5e-17
UNIPROTKB|Q5U2N8	554	Ttc26 "Tetratricopeptide repea	0.426	0.126	0.571	3.5e-17
UNIPROTKB|F1MF33	553	TTC26 "Uncharacterized protein	0.426	0.126	0.571	3.5e-17
UNIPROTKB|E2QTM7	554	TTC26 "Uncharacterized protein	0.426	0.126	0.571	3.5e-17
UNIPROTKB|A0AVF1	554	TTC26 "Tetratricopeptide repea	0.426	0.126	0.571	4.5e-17

FB|FBgn0038358 CG4525 [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
 Identities = 32/66 (48%), Positives = 45/66 (68%)

Query:    48 HLKQAWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRG 107
             H + AW++++T DT+ E+  +LQLIANE Y+           DMLE+L+P  E WEGKRG
Sbjct:   459 HPELAWNVFITRDTNAEAFILLQLIANECYKCAEFWVAAKAFDMLEKLDPSPENWEGKRG 518

Query:   108 ACAGLM 113
             ACAG++
Sbjct:   519 ACAGVL 524

GO:0042384 "cilium assembly" evidence=ISM

UNIPROTKB|A4III8 ttc26 "Tetratricopeptide repeat protein 26" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 222 (83.2 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 40/72 (55%), Positives = 51/72 (70%)

Query:    50 KQAWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRGAC 109
             + AW+LYL M+TS ES  +LQLIAN+ Y+           D+LERL+P  EYWEGKRGAC
Sbjct:   445 RMAWELYLKMETSGESFSLLQLIANDCYKMGHFYYAAKAFDILERLDPSPEYWEGKRGAC 504

Query:   110 AGLMQMIMAGKE 121
              G+ QMI+AG+E
Sbjct:   505 VGIFQMILAGRE 516

GO:0072372 "primary cilium" evidence=ISS

UNIPROTKB|F1NK58 TTC26 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 38/70 (54%), Positives = 48/70 (68%)

Query:    52 AWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRGACAG 111
             AW LYL M+TS ES  +LQLIAN+ Y+           D+LERL+   E+WEGKRGAC G
Sbjct:   448 AWKLYLKMETSGESFNLLQLIANDCYKMRQFYYAAKAFDVLERLDSNPEFWEGKRGACVG 507

Query:   112 LMQMIMAGKE 121
             + QMI+AG+E
Sbjct:   508 VFQMILAGRE 517

GO:0042384 "cilium assembly" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

UNIPROTKB|F1SR18 TTC26 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 41/70 (58%), Positives = 50/70 (71%)

Query:    52 AWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRGACAG 111
             AW+LYL M+TS ES  +LQLIAN+ YR           D+LERL+P  EYWEGKRGAC G
Sbjct:   446 AWELYLKMETSGESFSLLQLIANDCYRMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 505

Query:   112 LMQMIMAGKE 121
             + QMI+AG+E
Sbjct:   506 IFQMILAGRE 515

GO:0072372 "primary cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

MGI|MGI:2444853 Ttc26 "tetratricopeptide repeat domain 26" [Mus musculus (taxid:10090)]

 Score = 219 (82.2 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    52 AWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRGACAG 111
             AW+LYL M+TS ES  +LQLIAN+ Y+           D+LERL+P  EYWEGKRGAC G
Sbjct:   447 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 506

Query:   112 LMQMIMAGKE 121
             + QMI+AG+E
Sbjct:   507 IFQMILAGRE 516

GO:0003674 "molecular_function" evidence=ND

GO:0005929 "cilium" evidence=ISO;IDA

GO:0008594 "photoreceptor cell morphogenesis" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0036064 "cilium basal body" evidence=IDA

GO:0042384 "cilium assembly" evidence=ISO;IMP

GO:0042995 "cell projection" evidence=IEA

GO:0046530 "photoreceptor cell differentiation" evidence=ISO

GO:0072372 "primary cilium" evidence=IDA

RGD|1561363 Ttc26 "tetratricopeptide repeat domain 26" [Rattus norvegicus (taxid:10116)]

 Score = 219 (82.2 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    52 AWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRGACAG 111
             AW+LYL M+TS ES  +LQLIAN+ Y+           D+LERL+P  EYWEGKRGAC G
Sbjct:   447 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 506

Query:   112 LMQMIMAGKE 121
             + QMI+AG+E
Sbjct:   507 IFQMILAGRE 516

GO:0005929 "cilium" evidence=ISO;IDA

GO:0036064 "cilium basal body" evidence=ISO

GO:0042384 "cilium assembly" evidence=IEA;ISO;ISS

GO:0072372 "primary cilium" evidence=IEA;ISO

UNIPROTKB|Q5U2N8 Ttc26 "Tetratricopeptide repeat protein 26" [Rattus norvegicus (taxid:10116)]

 Score = 219 (82.2 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    52 AWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRGACAG 111
             AW+LYL M+TS ES  +LQLIAN+ Y+           D+LERL+P  EYWEGKRGAC G
Sbjct:   447 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 506

Query:   112 LMQMIMAGKE 121
             + QMI+AG+E
Sbjct:   507 IFQMILAGRE 516

GO:0072372 "primary cilium" evidence=IEA

UNIPROTKB|F1MF33 TTC26 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    52 AWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRGACAG 111
             AW+LYL M+TS ES  +LQLIAN+ Y+           D+LERL+P  EYWEGKRGAC G
Sbjct:   446 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 505

Query:   112 LMQMIMAGKE 121
             + QMI+AG+E
Sbjct:   506 IFQMILAGRE 515

GO:0072372 "primary cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

UNIPROTKB|E2QTM7 TTC26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    52 AWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRGACAG 111
             AW+LYL M+TS ES  +LQLIAN+ Y+           D+LERL+P  EYWEGKRGAC G
Sbjct:   447 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 506

Query:   112 LMQMIMAGKE 121
             + QMI+AG+E
Sbjct:   507 IFQMILAGRE 516

GO:0072372 "primary cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

UNIPROTKB|A0AVF1 TTC26 "Tetratricopeptide repeat protein 26" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    52 AWDLYLTMDTSPESLQILQLIANESYRRXXXXXXXXXXDMLERLEPLAEYWEGKRGACAG 111
             AW+LYL M+TS ES  +LQLIAN+ Y+           D+LERL+P  EYWEGKRGAC G
Sbjct:   447 AWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVG 506

Query:   112 LMQMIMAGKE 121
             + QMI+AG+E
Sbjct:   507 IFQMIIAGRE 516

GO:0072372 "primary cilium" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG3785|consensus	557		100.0
KOG3785|consensus	557		99.96
PRK15331	165	chaperone protein SicA; Provisional	94.39
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	93.77
PRK11788	389	tetratricopeptide repeat protein; Provisional	90.25
PRK11788	389	tetratricopeptide repeat protein; Provisional	88.67
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	87.82
PLN03077	857	Protein ECB2; Provisional	87.27
TIGR02552	135	LcrH_SycD type III secretion low calcium response	86.39
PLN03077	857	Protein ECB2; Provisional	85.76
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	85.63
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	85.13
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	84.49
PLN03218	1060	maturation of RBCL 1; Provisional	84.32
PLN03218	1060	maturation of RBCL 1; Provisional	83.88
KOG2076|consensus	895		83.37
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	81.94
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	80.15

>KOG3785|consensus

Probab=100.00  E-value=2.1e-50  Score=358.18  Aligned_cols=144  Identities=48%  Similarity=0.746  Sum_probs=136.9

Q ss_pred             cchhhhhhhhhhccCcchhhhhcccccccchhhhHHHHHHHHHH------------------------------------
Q psy12002          8 DNHDLIKHNLVVFRGGEGALQVLPPLIDVIPESRLNLVIYHLKQ------------------------------------   51 (164)
Q Consensus         8 ~~~dli~hNl~vFr~G~~Al~vLp~L~~~~pear~NLvi~~l~~------------------------------------   51 (164)
                      |..+|+|||||||||||+|+||||||+++|||||+||+|||+++                                    
T Consensus       255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g  334 (557)
T KOG3785|consen  255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG  334 (557)
T ss_pred             hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence            88999999999999999999999999999999999999999999                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy12002         52 --------------------------------------------------------------------------------   51 (164)
Q Consensus        52 --------------------------------------------------------------------------------   51 (164)
                                                                                                      
T Consensus       335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEe  414 (557)
T KOG3785|consen  335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEE  414 (557)
T ss_pred             cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002         52 --------------------------------AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLA   99 (164)
Q Consensus        52 --------------------------------Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p   99 (164)
                                                      ||++||++++++|+|+|||+|||+||++++||||+||||++|++||.|
T Consensus       415 lf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  415 LFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             HHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence                                            999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHhhHHHHHHHHHhccc---cccchhHHHHHh--cCHHHHHHHHHHhhcccc
Q psy12002        100 EYWEGKRGACAGLMQMIMAGKE---NRLNVPWAKCAL--GQYKEAEEMFLLVQNEGL  151 (164)
Q Consensus       100 e~~~Gkrga~ag~F~~~~~~~e---~~Dnf~qa~a~~--g~~kEAEe~~l~Iq~~~~  151 (164)
                      |+|+||||||||+||++.++++   |....+++..-+  ....++|-++.+|.+|.-
T Consensus       495 EnWeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa~  551 (557)
T KOG3785|consen  495 ENWEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWAE  551 (557)
T ss_pred             cccCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence            9999999999999999999997   677788866655  667899999999999964

>KOG3785|consensus

Probab=99.96  E-value=1.9e-30  Score=231.02  Aligned_cols=157  Identities=25%  Similarity=0.334  Sum_probs=137.5

Q ss_pred             ccchhhhhhhh---hhcc--Ccchhhhhcccccccch--------hhhHHHHHHHHHH-------------------HHH
Q psy12002          7 SDNHDLIKHNL---VVFR--GGEGALQVLPPLIDVIP--------ESRLNLVIYHLKQ-------------------AWD   54 (164)
Q Consensus         7 ~~~~dli~hNl---~vFr--~G~~Al~vLp~L~~~~p--------ear~NLvi~~l~~-------------------Aw~   54 (164)
                      .++++.|+.||   ++||  ||+.|+++++.|.|-+.        ..|||||+|+.++                   +.+
T Consensus       214 q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i  293 (557)
T KOG3785|consen  214 QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII  293 (557)
T ss_pred             hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence            38899999999   8899  99999999999999543        4599999999998                   888


Q ss_pred             HHHhcCCchhHHHHHH-------------HHHHHHHH-----HHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHH
Q psy12002         55 LYLTMDTSPESLQILQ-------------LIANESYR-----RAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMI  116 (164)
Q Consensus        55 lyl~~e~~~eaf~LLq-------------~IandcY~-----~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~  116 (164)
                      +||+.++..||++|+|             +++++--|     ..|..-|++-|+++|.+-..+|++|||| |||++||+.
T Consensus       294 YyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ-smAs~fFL~  372 (557)
T KOG3785|consen  294 YYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ-SMASYFFLS  372 (557)
T ss_pred             eecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH-HHHHHHHHH
Confidence            9999999999999887             56666555     7899999999999999999999999966 999999953


Q ss_pred             Hhcc-------------ccccch----hHHHHHhcCHHHHHHHHHHhhcccccCchhhhhhcccC
Q psy12002        117 MAGK-------------ENRLNV----PWAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC  164 (164)
Q Consensus       117 ~~~~-------------e~~Dnf----~qa~a~~g~~kEAEe~~l~Iq~~~~kn~~~y~swl~rc  164 (164)
                      ..=+             -++|.|    +||++|+|+|+||||.|.+|+++++||+++|+||||||
T Consensus       373 ~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArC  437 (557)
T KOG3785|consen  373 FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARC  437 (557)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH
Confidence            2211             244444    68999999999999999999999999999999999999

>PRK15331 chaperone protein SicA; Provisional

Probab=94.39  E-value=0.53  Score=38.28  Aligned_cols=83  Identities=18%  Similarity=0.121  Sum_probs=60.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccchhhhHhhHHHHHHHH--------------Hhcc-c--cc
Q psy12002         62 SPESLQILQLIANESYRRAKFWFAFKAFDMLERLEP-LAEYWEGKRGACAGLMQMI--------------MAGK-E--NR  123 (164)
Q Consensus        62 ~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~-~pe~~~Gkrga~ag~F~~~--------------~~~~-e--~~  123 (164)
                      +++...-+=..|-.=|..|.+-.|.+.|..|-.+|+ +++||-|.-    +|.|+.              +... .  |.
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLa----a~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLA----AVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            334444455666777889999999999999999998 479999853    333321              1111 2  44


Q ss_pred             cchhHHHHHhcCHHHHHHHHHHhhc
Q psy12002        124 LNVPWAKCALGQYKEAEEMFLLVQN  148 (164)
Q Consensus       124 Dnf~qa~a~~g~~kEAEe~~l~Iq~  148 (164)
                      +.-++++-++|+-.+|.+.|..+.+
T Consensus       109 f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        109 FFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             chHHHHHHHhCCHHHHHHHHHHHHh
Confidence            5557899999999999999988765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=93.77  E-value=0.44  Score=38.41  Aligned_cols=87  Identities=15%  Similarity=0.065  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhHH----------HHHH-HHHhcc---ccccchh
Q psy12002         63 PESLQILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGACA----------GLMQ-MIMAGK---ENRLNVP  127 (164)
Q Consensus        63 ~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~a----------g~F~-~~~~~~---e~~Dnf~  127 (164)
                      +|..+.|=.++..-|..|.+-.|.+.|..+-.+||. ++||=|.= +|.          -+|. .+....   ++..+.+
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG-~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag  110 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLG-ECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            566777777888888999999999999999999996 69999842 221          1111 111111   2455557


Q ss_pred             HHHHHhcCHHHHHHHHHHhhccc
Q psy12002        128 WAKCALGQYKEAEEMFLLVQNEG  150 (164)
Q Consensus       128 qa~a~~g~~kEAEe~~l~Iq~~~  150 (164)
                      +++-++|+.++|++.|..+-++.
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHh
Confidence            79999999999999999776664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=90.25  E-value=6.9  Score=33.10  Aligned_cols=29  Identities=14%  Similarity=0.070  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002         71 LIANESYRRAKFWFAFKAFDMLERLEPLA   99 (164)
Q Consensus        71 ~IandcY~~~~f~yA~kaFd~le~lD~~p   99 (164)
                      .++.-+...|++--|.+.|+.+-+.+|.+
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (389)
T PRK11788        146 QLLEIYQQEKDWQKAIDVAERLEKLGGDS  174 (389)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence            33444556777777777777766655543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=88.67  E-value=2.5  Score=35.82  Aligned_cols=30  Identities=7%  Similarity=-0.200  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy12002         71 LIANESYRRAKFWFAFKAFDMLERLEPLAE  100 (164)
Q Consensus        71 ~IandcY~~~~f~yA~kaFd~le~lD~~pe  100 (164)
                      .+++..+..|.+-.|.+.++.+-+.+|+++
T Consensus       254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        254 KLMECYQALGDEAEGLEFLRRALEEYPGAD  283 (389)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence            344555567777777777777666666654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=87.82  E-value=9.1  Score=34.72  Aligned_cols=93  Identities=13%  Similarity=0.112  Sum_probs=51.6

Q ss_pred             HHHhcCCchhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhcCCCccchhh---------hHhhHHH
Q psy12002         55 LYLTMDTSPESLQILQLI--------------ANESYRRAKFWFAFKAFDMLERLEPLAEYWEG---------KRGACAG  111 (164)
Q Consensus        55 lyl~~e~~~eaf~LLq~I--------------andcY~~~~f~yA~kaFd~le~lD~~pe~~~G---------krga~ag  111 (164)
                      ++.+.+..++|..+++.+              +..++..|.+-.|.+.|...-..+|+++.+.+         +......
T Consensus       678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  757 (899)
T TIGR02917       678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVK  757 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHH
Confidence            344455555555555533              33355678888888888877677776654432         1112223


Q ss_pred             HHHHHHhccccccch-----hHHHHHhcCHHHHHHHHHHhhc
Q psy12002        112 LMQMIMAGKENRLNV-----PWAKCALGQYKEAEEMFLLVQN  148 (164)
Q Consensus       112 ~F~~~~~~~e~~Dnf-----~qa~a~~g~~kEAEe~~l~Iq~  148 (164)
                      .+..++... |.+..     +.++...|++.+|++.|..+-.
T Consensus       758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  798 (899)
T TIGR02917       758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK  798 (899)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            333323222 22221     3356667999999888877643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN03077 Protein ECB2; Provisional

Probab=87.27  E-value=4.7  Score=38.91  Aligned_cols=134  Identities=15%  Similarity=0.206  Sum_probs=76.6

Q ss_pred             Ccchhhhhcccccc--cc-hhhhHHHHHHHHHH------HHHHHHhcC------CchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12002         22 GGEGALQVLPPLID--VI-PESRLNLVIYHLKQ------AWDLYLTMD------TSPESLQILQLIANESYRRAKFWFAF   86 (164)
Q Consensus        22 ~G~~Al~vLp~L~~--~~-pear~NLvi~~l~~------Aw~lyl~~e------~~~eaf~LLq~IandcY~~~~f~yA~   86 (164)
                      .++.|++++..+++  +. ++.-.|.+|--..+      |+.++-+|.      +..+.++   .++..+-+.|.+-.|.
T Consensus       569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~  645 (857)
T PLN03077        569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAY  645 (857)
T ss_pred             CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHH
Confidence            55777777776654  23 23344444432222      555554443      1112222   2333445578887777


Q ss_pred             HHHHHHHhcCCCccchhhhHhhHHH---------HHHHHHhccccccc--h---hHHHHHhcCHHHHHHHHHHhhccccc
Q psy12002         87 KAFDMLERLEPLAEYWEGKRGACAG---------LMQMIMAGKENRLN--V---PWAKCALGQYKEAEEMFLLVQNEGLK  152 (164)
Q Consensus        87 kaFd~le~lD~~pe~~~Gkrga~ag---------~F~~~~~~~e~~Dn--f---~qa~a~~g~~kEAEe~~l~Iq~~~~k  152 (164)
                      +-++.+. +.|++..|.-.-++|.-         +...++. -+|.+.  +   ..+++..|+|.||+++...|...+++
T Consensus       646 ~~~~~m~-~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~-l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~  723 (857)
T PLN03077        646 NFINKMP-ITPDPAVWGALLNACRIHRHVELGELAAQHIFE-LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT  723 (857)
T ss_pred             HHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence            6666553 67778888766555421         1111111 123222  1   34788899999999999999999988


Q ss_pred             Cchhhhhhc
Q psy12002        153 NDYVYISHL  161 (164)
Q Consensus       153 n~~~y~swl  161 (164)
                      .++-+ ||.
T Consensus       724 k~~g~-s~i  731 (857)
T PLN03077        724 VDPGC-SWV  731 (857)
T ss_pred             CCCCc-cEE
Confidence            88654 553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=86.39  E-value=10  Score=27.22  Aligned_cols=20  Identities=25%  Similarity=0.101  Sum_probs=11.6

Q ss_pred             HHHHHhcCHHHHHHHHHHhh
Q psy12002        128 WAKCALGQYKEAEEMFLLVQ  147 (164)
Q Consensus       128 qa~a~~g~~kEAEe~~l~Iq  147 (164)
                      .++...|++++|...+..+.
T Consensus        93 ~~~~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        93 ECLLALGEPESALKALDLAI  112 (135)
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            35555577777766655443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03077 Protein ECB2; Provisional

Probab=85.76  E-value=7.4  Score=37.58  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=17.2

Q ss_pred             HHHHhcCHHHHHHHHHHhhccccc-Cchhhhhhc
Q psy12002        129 AKCALGQYKEAEEMFLLVQNEGLK-NDYVYISHL  161 (164)
Q Consensus       129 a~a~~g~~kEAEe~~l~Iq~~~~k-n~~~y~swl  161 (164)
                      +++..|..++|.++|..|.+.+.+ +..+|.+-|
T Consensus       563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll  596 (857)
T PLN03077        563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL  596 (857)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence            444456666666666655555444 444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=85.63  E-value=16  Score=28.89  Aligned_cols=22  Identities=18%  Similarity=0.030  Sum_probs=16.5

Q ss_pred             hHHHHHhcCHHHHHHHHHHhhc
Q psy12002        127 PWAKCALGQYKEAEEMFLLVQN  148 (164)
Q Consensus       127 ~qa~a~~g~~kEAEe~~l~Iq~  148 (164)
                      .++...+|++.+|..++..+..
T Consensus       210 ~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       210 VEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            4477777888888888777654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=85.13  E-value=4.2  Score=38.29  Aligned_cols=81  Identities=16%  Similarity=0.152  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHH---------HHHHHHHhccccc--cch---hHHHHHhcCHHHHHHH
Q psy12002         77 YRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACA---------GLMQMIMAGKENR--LNV---PWAKCALGQYKEAEEM  142 (164)
Q Consensus        77 Y~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~a---------g~F~~~~~~~e~~--Dnf---~qa~a~~g~~kEAEe~  142 (164)
                      -+.|++-.|.+-|+-. ...|+..+|.-.-++|.         -++.. +.+-+|.  .++   ..+++..|++.||+++
T Consensus       473 ~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~-l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        473 GREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEK-LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             HhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH-HhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence            3477777776655433 24555566764433331         11221 1122332  233   2378888999999999


Q ss_pred             HHHhhcccccCchhhhhh
Q psy12002        143 FLLVQNEGLKNDYVYISH  160 (164)
Q Consensus       143 ~l~Iq~~~~kn~~~y~sw  160 (164)
                      +..|++.+++.+.-+ ||
T Consensus       551 ~~~m~~~g~~k~~g~-s~  567 (697)
T PLN03081        551 VETLKRKGLSMHPAC-TW  567 (697)
T ss_pred             HHHHHHcCCccCCCe-eE
Confidence            999999988765543 45

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=84.49  E-value=7.1  Score=36.79  Aligned_cols=22  Identities=32%  Similarity=0.299  Sum_probs=10.1

Q ss_pred             HHHHhcCHHHHHHHHHHhhccc
Q psy12002        129 AKCALGQYKEAEEMFLLVQNEG  150 (164)
Q Consensus       129 a~a~~g~~kEAEe~~l~Iq~~~  150 (164)
                      +++..|+.++|.++|..|.+.+
T Consensus       400 ~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        400 GYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Confidence            3444444555544444444433

>PLN03218 maturation of RBCL 1; Provisional

Probab=84.32  E-value=9  Score=39.06  Aligned_cols=24  Identities=8%  Similarity=0.144  Sum_probs=11.1

Q ss_pred             HHHhcCHHHHHHHHHHhhcccccC
Q psy12002        130 KCALGQYKEAEEMFLLVQNEGLKN  153 (164)
Q Consensus       130 ~a~~g~~kEAEe~~l~Iq~~~~kn  153 (164)
                      ++..|+..+|++++..+....++.
T Consensus       764 ~~k~G~le~A~~l~~~M~k~Gi~p  787 (1060)
T PLN03218        764 SERKDDADVGLDLLSQAKEDGIKP  787 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCC
Confidence            333355555555555544444433

>PLN03218 maturation of RBCL 1; Provisional

Probab=83.88  E-value=12  Score=38.16  Aligned_cols=91  Identities=16%  Similarity=0.073  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC--CCccchh---------hhHhhHHHHHHHHHhccccccchhH-----HHHHhc
Q psy12002         71 LIANESYRRAKFWFAFKAFDMLERLE--PLAEYWE---------GKRGACAGLMQMIMAGKENRLNVPW-----AKCALG  134 (164)
Q Consensus        71 ~IandcY~~~~f~yA~kaFd~le~lD--~~pe~~~---------Gkrga~ag~F~~~~~~~e~~Dnf~q-----a~a~~g  134 (164)
                      .+.+.|.+.|.+-.|.+.|+.+.+..  |+..+|.         |+-.-+..+|..+....-.++...|     +++..|
T Consensus       654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G  733 (1060)
T PLN03218        654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN  733 (1060)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence            55567888999999999998877654  4444444         3223344456554433223343333     777779


Q ss_pred             CHHHHHHHHHHhhccccc-Cchhhhhhc
Q psy12002        135 QYKEAEEMFLLVQNEGLK-NDYVYISHL  161 (164)
Q Consensus       135 ~~kEAEe~~l~Iq~~~~k-n~~~y~swl  161 (164)
                      +++||.++|..|...+.+ +..+|.+-+
T Consensus       734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        734 QLPKALEVLSEMKRLGLCPNTITYSILL  761 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            999999999998877654 556665543

>KOG2076|consensus

Probab=83.37  E-value=5.6  Score=39.93  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=12.9

Q ss_pred             HHHHHHhcCCchhHHHHHHHHH
Q psy12002         52 AWDLYLTMDTSPESLQILQLIA   73 (164)
Q Consensus        52 Aw~lyl~~e~~~eaf~LLq~Ia   73 (164)
                      +.+.|++.+...+|..++-.|.
T Consensus       420 ~a~al~~~~~~~~Al~~l~~i~  441 (895)
T KOG2076|consen  420 LADALTNIGKYKEALRLLSPIT  441 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHh
Confidence            4445555666666666666444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=81.94  E-value=6.3  Score=25.14  Aligned_cols=54  Identities=22%  Similarity=0.286  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHhh
Q psy12002         73 ANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQ  147 (164)
Q Consensus        73 andcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~Iq  147 (164)
                      +..-|..|++--|.+.|+.+-+.+|+ ++.|-+                     +++++...|++++|.+.|..+-
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~---------------------lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYL---------------------LGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHH---------------------HHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH---------------------HHHHHHHcCCHHHHHHHHHHHH
Confidence            44557788888888888888777754 222222                     3456677899999988887663

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=80.15  E-value=2.1  Score=27.42  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh
Q psy12002         71 LIANESYRRAKFWFAFKAFDMLERLEPL-AEYWE  103 (164)
Q Consensus        71 ~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~  103 (164)
                      .++..+++.|++--|.+.++.+-..+|+ |++|.
T Consensus        30 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen   30 LLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            5667778899999998888888888887 55554

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	93.99
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	93.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	93.55
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	93.4
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	93.19
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	93.0
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	92.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	91.92
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	91.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	91.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	91.37
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	91.14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	90.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	90.05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	89.11
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	89.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	88.96
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	88.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	88.7
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	88.64
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	88.56
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	88.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	87.6
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	87.47
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	87.37
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	87.29
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	87.15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	86.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.6
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	86.57
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	86.55
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	86.48
2gw1_A	514	Mitochondrial precursor proteins import receptor;	85.26
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	84.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	84.56
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	84.38
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	84.34
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	84.28
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	84.12
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	83.8
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	83.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	83.46
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	83.45
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	83.27
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	82.97
3u4t_A	272	TPR repeat-containing protein; structural genomics	82.37
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	82.02
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	81.74
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	81.67
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	81.51
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	81.37
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	80.24
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	80.18

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=93.99  E-value=0.94  Score=38.03  Aligned_cols=74  Identities=14%  Similarity=0.033  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhccccccch-----hHHHHHhcCHHH
Q psy12002         74 NESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKENRLNV-----PWAKCALGQYKE  138 (164)
Q Consensus        74 ndcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~~Dnf-----~qa~a~~g~~kE  138 (164)
                      ..+++.|++-.|.+.|+..-+++|. ++.|..+         -.-+..+|...+.. .|++..     ..++...|++++
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~  459 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILL  459 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHH
Confidence            3455567777777777665555543 3444421         11222333332221 122211     225555577777


Q ss_pred             HHHHHHHhhc
Q psy12002        139 AEEMFLLVQN  148 (164)
Q Consensus       139 AEe~~l~Iq~  148 (164)
                      |++.|..+..
T Consensus       460 A~~~~~~~~~  469 (597)
T 2xpi_A          460 ANEYLQSSYA  469 (597)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777666544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=93.84  E-value=0.28  Score=36.16  Aligned_cols=20  Identities=30%  Similarity=0.205  Sum_probs=14.3

Q ss_pred             hHHHHHhcCHHHHHHHHHHh
Q psy12002        127 PWAKCALGQYKEAEEMFLLV  146 (164)
Q Consensus       127 ~qa~a~~g~~kEAEe~~l~I  146 (164)
                      +.++..+|++++|.+.|...
T Consensus       111 g~~~~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELV  130 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            44667778888887777654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.55  E-value=0.48  Score=37.87  Aligned_cols=118  Identities=13%  Similarity=0.069  Sum_probs=67.9

Q ss_pred             chhhhhcccccc-----cchhhhHHHHHHHHHH-----HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002         24 EGALQVLPPLID-----VIPESRLNLVIYHLKQ-----AWDLYLTMDTSPESLQILQLIANESYRRAKFWFAFKAFDMLE   93 (164)
Q Consensus        24 ~~Al~vLp~L~~-----~~pear~NLvi~~l~~-----Aw~lyl~~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le   93 (164)
                      +.|++++..++.     ..|.+.+++..-+...     |...|-+ .++.++..   ..+.-..++|.+-.|.+.|+-+-
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~---~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMA---MTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHH---HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHH---HHHHHHHHCCCHHHHHHHHHHHH
Confidence            778888877653     2466777776655554     6666665 33333332   23344556788888888888877


Q ss_pred             hcCCCcc------chh------hhHhhHHHHHHHHHhccccccch-----hHHHHHhcCHHHHHHHHHHh
Q psy12002         94 RLEPLAE------YWE------GKRGACAGLMQMIMAGKENRLNV-----PWAKCALGQYKEAEEMFLLV  146 (164)
Q Consensus        94 ~lD~~pe------~~~------Gkrga~ag~F~~~~~~~e~~Dnf-----~qa~a~~g~~kEAEe~~l~I  146 (164)
                      +.+|+.-      -|-      |+-.-...+|..++.. .|++..     +.++...|+++||++.|..+
T Consensus       158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  226 (291)
T 3mkr_A          158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA  226 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7776541      111      3333444555554443 222211     22555668888888887764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=93.40  E-value=1.6  Score=32.99  Aligned_cols=84  Identities=13%  Similarity=0.164  Sum_probs=51.9

Q ss_pred             hhccCc--chhhhhcccccccc------hhhhHHHHHHHHHH--------HHHHHHhcCCch-hHHHHHHHHHHHHHH--
Q psy12002         18 VVFRGG--EGALQVLPPLIDVI------PESRLNLVIYHLKQ--------AWDLYLTMDTSP-ESLQILQLIANESYR--   78 (164)
Q Consensus        18 ~vFr~G--~~Al~vLp~L~~~~------pear~NLvi~~l~~--------Aw~lyl~~e~~~-eaf~LLq~IandcY~--   78 (164)
                      ..|+.|  +.|...+..+++..      |++..+|..-+.+.        .++-.++..+.+ ..-..+-.++...+.  
T Consensus        24 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~  103 (261)
T 3qky_A           24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS  103 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence            455544  77888887777753      55666665554443        334444443322 333334445555666  


Q ss_pred             ------HHHHHHHHHHHHHHHhcCCCccc
Q psy12002         79 ------RAKFWFAFKAFDMLERLEPLAEY  101 (164)
Q Consensus        79 ------~~~f~yA~kaFd~le~lD~~pe~  101 (164)
                            .|++--|.+.|+.+-+.+|+..+
T Consensus       104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  132 (261)
T 3qky_A          104 PPYELDQTDTRKAIEAFQLFIDRYPNHEL  132 (261)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred             ccccccchhHHHHHHHHHHHHHHCcCchh
Confidence                  89999999999988788876543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=93.19  E-value=1.9  Score=32.32  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=76.0

Q ss_pred             hhccCc--chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHh---cCCch-hHHHHHHHHHHHHHHH----
Q psy12002         18 VVFRGG--EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLT---MDTSP-ESLQILQLIANESYRR----   79 (164)
Q Consensus        18 ~vFr~G--~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~---~e~~~-eaf~LLq~IandcY~~----   79 (164)
                      +.++.|  +.|+..+-..+..   .|++..||...+.+.     |...|.+   .++.. ++.   ..++......    
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~---~~lg~~~~~~~~~~   90 (217)
T 2pl2_A           14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY---MVLSEAYVALYRQA   90 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHhhhhh
Confidence            445544  5677766666654   466777777666554     4444332   23222 222   2334445667    


Q ss_pred             -------HHHHHHHHHHHHHHhcCCC-ccchh---------hhHhhHHHHHHHHHhccccc---cchhHHHHHhcCHHHH
Q psy12002         80 -------AKFWFAFKAFDMLERLEPL-AEYWE---------GKRGACAGLMQMIMAGKENR---LNVPWAKCALGQYKEA  139 (164)
Q Consensus        80 -------~~f~yA~kaFd~le~lD~~-pe~~~---------Gkrga~ag~F~~~~~~~e~~---Dnf~qa~a~~g~~kEA  139 (164)
                             |++-.|.+.|+-.-+++|+ ++.|-         |+..-...+|...+.-.++.   .+++.++...|+++||
T Consensus        91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A  170 (217)
T 2pl2_A           91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEA  170 (217)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHH
Confidence                   9999999999988788876 45554         33334455555554433111   1224477788999999


Q ss_pred             HHHHHHhhc
Q psy12002        140 EEMFLLVQN  148 (164)
Q Consensus       140 Ee~~l~Iq~  148 (164)
                      .+.+...-.
T Consensus       171 ~~~~~~al~  179 (217)
T 2pl2_A          171 LAQYAKALE  179 (217)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988877643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=93.00  E-value=1.6  Score=36.69  Aligned_cols=25  Identities=8%  Similarity=-0.040  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002         73 ANESYRRAKFWFAFKAFDMLERLEP   97 (164)
Q Consensus        73 andcY~~~~f~yA~kaFd~le~lD~   97 (164)
                      +..|...|++-.|.+.|+.+-..+|
T Consensus       448 ~~~~~~~g~~~~A~~~~~~~~~~~~  472 (597)
T 2xpi_A          448 GMQHMQLGNILLANEYLQSSYALFQ  472 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3445555666666666655444444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=92.94  E-value=1  Score=31.32  Aligned_cols=21  Identities=24%  Similarity=0.253  Sum_probs=14.9

Q ss_pred             hHHHHHhcCHHHHHHHHHHhh
Q psy12002        127 PWAKCALGQYKEAEEMFLLVQ  147 (164)
Q Consensus       127 ~qa~a~~g~~kEAEe~~l~Iq  147 (164)
                      +.++..+|++.+|.+.|...-
T Consensus        93 g~~~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           93 AECHLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            446677788888887776543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=91.92  E-value=2.7  Score=31.73  Aligned_cols=19  Identities=16%  Similarity=0.375  Sum_probs=10.2

Q ss_pred             HHHHhcCHHHHHHHHHHhh
Q psy12002        129 AKCALGQYKEAEEMFLLVQ  147 (164)
Q Consensus       129 a~a~~g~~kEAEe~~l~Iq  147 (164)
                      ++...|++++|.+.+...-
T Consensus       279 ~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          279 IHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             HHHHHTCHHHHHHHHHTTT
T ss_pred             HHHHhccHHHHHHHHHHHH
Confidence            4444466666655555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=91.85  E-value=1.5  Score=31.19  Aligned_cols=53  Identities=11%  Similarity=0.142  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHh
Q psy12002         73 ANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLV  146 (164)
Q Consensus        73 andcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~I  146 (164)
                      +..++..|++-.|.++|+..-.+||+ |+.|                     .+++.++...|++.+|++.|...
T Consensus        62 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~---------------------~~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFP---------------------FHAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH---------------------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCCchHH---------------------HHHHHHHHHcCCHHHHHHHHHHH
Confidence            34445566666666666655555543 1111                     12344666778888887777654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=91.58  E-value=3.4  Score=31.11  Aligned_cols=114  Identities=10%  Similarity=0.127  Sum_probs=72.9

Q ss_pred             ccchhhhHHHHHHHHHH-----HHHHHHh---cCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cch--
Q psy12002         35 DVIPESRLNLVIYHLKQ-----AWDLYLT---MDTSP-ESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLA-EYW--  102 (164)
Q Consensus        35 ~~~pear~NLvi~~l~~-----Aw~lyl~---~e~~~-eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~--  102 (164)
                      ...|++.+++..-+.+.     |..+|.+   ..+.+ ..-..+-.++...+.+|++--|.+.|+-+-+++|+. ...  
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            35677888888777666     5555444   34333 235556677888899999999999999988887743 221  


Q ss_pred             ------------------hhhHhhHHHHHHHHHhccccc---------------------cchhHHHHHhcCHHHHHHHH
Q psy12002        103 ------------------EGKRGACAGLMQMIMAGKENR---------------------LNVPWAKCALGQYKEAEEMF  143 (164)
Q Consensus       103 ------------------~Gkrga~ag~F~~~~~~~e~~---------------------Dnf~qa~a~~g~~kEAEe~~  143 (164)
                                        .|+-.-....|..++....+.                     ...+.++...|+|++|.+.|
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence                              333334445555544433211                     12244566669999999998


Q ss_pred             HHhhc
Q psy12002        144 LLVQN  148 (164)
Q Consensus       144 l~Iq~  148 (164)
                      ..+-+
T Consensus       172 ~~~l~  176 (261)
T 3qky_A          172 EAVFD  176 (261)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=91.37  E-value=1.4  Score=32.93  Aligned_cols=111  Identities=14%  Similarity=0.044  Sum_probs=65.6

Q ss_pred             chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh----
Q psy12002         37 IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWE----  103 (164)
Q Consensus        37 ~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~----  103 (164)
                      .|++.+++...+.+.     |...|.+   .++..  -..+..++..++..|++-.|.+.|+-.-++||+ ++.|-    
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQD--PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            355667776655544     4444443   23222  223345566678899999999999988788875 34443    


Q ss_pred             ----------------hhHhhHHHHHHHHHhcccccc-----chhHHHHHhcCHHHHHHHHHHhhccc
Q psy12002        104 ----------------GKRGACAGLMQMIMAGKENRL-----NVPWAKCALGQYKEAEEMFLLVQNEG  150 (164)
Q Consensus       104 ----------------Gkrga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEAEe~~l~Iq~~~  150 (164)
                                      |+-.-...+|...+.-. |.+     +++.++...|++++|++.|...-.-.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence                            22222333344333221 222     22447778899999999988765544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=91.14  E-value=3.3  Score=33.15  Aligned_cols=75  Identities=21%  Similarity=0.162  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh-------------hhHhhHHHHHHHHHhcccccc-----chhHHHHHh
Q psy12002         73 ANESYRRAKFWFAFKAFDMLERLEPL-AEYWE-------------GKRGACAGLMQMIMAGKENRL-----NVPWAKCAL  133 (164)
Q Consensus        73 andcY~~~~f~yA~kaFd~le~lD~~-pe~~~-------------Gkrga~ag~F~~~~~~~e~~D-----nf~qa~a~~  133 (164)
                      +..|+..|++-.|.+.|+-.-..+|+ ++++.             |+-.-+...+...+.- .|.+     ++..++...
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~  342 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIE  342 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHh
Confidence            77788888888888888887677765 33222             1111222222222221 1211     123466677


Q ss_pred             cCHHHHHHHHHHhhc
Q psy12002        134 GQYKEAEEMFLLVQN  148 (164)
Q Consensus       134 g~~kEAEe~~l~Iq~  148 (164)
                      |++++|.+.+...-.
T Consensus       343 ~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          343 EMYDEAIQDYETAQE  357 (450)
T ss_dssp             TCHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999888887654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=90.40  E-value=3.7  Score=30.12  Aligned_cols=27  Identities=22%  Similarity=0.007  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12002         71 LIANESYRRAKFWFAFKAFDMLERLEP   97 (164)
Q Consensus        71 ~IandcY~~~~f~yA~kaFd~le~lD~   97 (164)
                      .++..++..|++-.|.+.|...-+.+|
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~  172 (252)
T 2ho1_A          146 NLGLVSLQMKKPAQAKEYFEKSLRLNR  172 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence            334444556666666666655544444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=90.05  E-value=4.7  Score=30.05  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccc-hh--------------------------hhHhhHHHHHHHHHhcccccc-------
Q psy12002         79 RAKFWFAFKAFDMLERLEPLAEY-WE--------------------------GKRGACAGLMQMIMAGKENRL-------  124 (164)
Q Consensus        79 ~~~f~yA~kaFd~le~lD~~pe~-~~--------------------------Gkrga~ag~F~~~~~~~e~~D-------  124 (164)
                      .|++--|.+.|+.+-+.+|+..+ |.                          |+-..++..|..++....+..       
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  188 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP  188 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence            57888888999888788877543 22                          222234444444443321111       


Q ss_pred             chhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002        125 NVPWAKCALGQYKEAEEMFLLVQNE  149 (164)
Q Consensus       125 nf~qa~a~~g~~kEAEe~~l~Iq~~  149 (164)
                      ....++..+|++.+|.+.+..+...
T Consensus       189 ~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          189 LMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            1244777779999999988877654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=89.11  E-value=1.8  Score=30.41  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=14.9

Q ss_pred             hHHHHHhcCHHHHHHHHHHhh
Q psy12002        127 PWAKCALGQYKEAEEMFLLVQ  147 (164)
Q Consensus       127 ~qa~a~~g~~kEAEe~~l~Iq  147 (164)
                      ..++..+|++++|.+.|...-
T Consensus        86 g~~~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHH
Confidence            446667788888888776554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=89.00  E-value=5.3  Score=29.21  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=16.3

Q ss_pred             hHHHHHhcCHHHHHHHHHHhhc
Q psy12002        127 PWAKCALGQYKEAEEMFLLVQN  148 (164)
Q Consensus       127 ~qa~a~~g~~kEAEe~~l~Iq~  148 (164)
                      +.+....|++++|++.+...-.
T Consensus       124 g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A          124 GQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hHHHHHhccHHHHHHHHHHHHh
Confidence            3466677999999888876654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=88.96  E-value=5.3  Score=30.87  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC
Q psy12002         76 SYRRAKFWFAFKAFDMLERLEPL   98 (164)
Q Consensus        76 cY~~~~f~yA~kaFd~le~lD~~   98 (164)
                      ++..|++-.|.+.|...-+.+|+
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~  213 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPT  213 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HhhcccHHHHHHHHHHHHHhCcC
Confidence            44566666666666665555554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=88.88  E-value=1.8  Score=34.08  Aligned_cols=78  Identities=13%  Similarity=0.010  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhh----------HHHHHHHHHhcccc----ccchhHHHHHhcCH
Q psy12002         71 LIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGA----------CAGLMQMIMAGKEN----RLNVPWAKCALGQY  136 (164)
Q Consensus        71 ~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga----------~ag~F~~~~~~~e~----~Dnf~qa~a~~g~~  136 (164)
                      ..+......|++-.|.+.++-+-..+|++.++.-..+.          .+..+...+....+    ..+++.++...|++
T Consensus       156 ~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~  235 (287)
T 3qou_A          156 LLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN  235 (287)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence            44555667899999999999888888877655432221          22334433332211    12234477777999


Q ss_pred             HHHHHHHHHhhc
Q psy12002        137 KEAEEMFLLVQN  148 (164)
Q Consensus       137 kEAEe~~l~Iq~  148 (164)
                      .||++.|..+-.
T Consensus       236 ~~A~~~l~~~l~  247 (287)
T 3qou_A          236 EEALELLFGHLR  247 (287)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999888876543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=88.70  E-value=4.8  Score=28.30  Aligned_cols=114  Identities=13%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             chhhhhcccccccc---hhhhHHHHHHHHHHHHHHHHhcCCchhHHHHHH--------------HHHHHHHHHHHHHHHH
Q psy12002         24 EGALQVLPPLIDVI---PESRLNLVIYHLKQAWDLYLTMDTSPESLQILQ--------------LIANESYRRAKFWFAF   86 (164)
Q Consensus        24 ~~Al~vLp~L~~~~---pear~NLvi~~l~~Aw~lyl~~e~~~eaf~LLq--------------~IandcY~~~~f~yA~   86 (164)
                      +.|++.+...++..   +++..+|..-+.        +++..++|...++              ..+..+...+++..|.
T Consensus        22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   93 (184)
T 3vtx_A           22 DGAIRAYKKVLKADPNNVETLLKLGKTYM--------DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAI   93 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHH
Confidence            67777777666644   456666655443        3333333333333              3455567788888899


Q ss_pred             HHHHHHHhcCCCc-cchhh---------hHhhHHHHHHHHHhcccccc-----chhHHHHHhcCHHHHHHHHHHh
Q psy12002         87 KAFDMLERLEPLA-EYWEG---------KRGACAGLMQMIMAGKENRL-----NVPWAKCALGQYKEAEEMFLLV  146 (164)
Q Consensus        87 kaFd~le~lD~~p-e~~~G---------krga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEAEe~~l~I  146 (164)
                      +.+...-.++|+. +.|..         +-.-...+|..++.-. |.+     +++.++...|++++|.+.|...
T Consensus        94 ~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  167 (184)
T 3vtx_A           94 DALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKA  167 (184)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9888877777763 44432         1222334444433322 211     2244777789999999988754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=88.64  E-value=2.1  Score=29.62  Aligned_cols=79  Identities=9%  Similarity=0.098  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhccc-c---ccchhHHHHHhc
Q psy12002         69 LQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKE-N---RLNVPWAKCALG  134 (164)
Q Consensus        69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e-~---~Dnf~qa~a~~g  134 (164)
                      .+...+..|+.|+|-.|.+.|+-.=++||. ++.|-.+         -.-+...|..++.-.. +   -.+.+.++..+|
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   95 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR   95 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence            334455666666666666666654455543 4444421         1112222222222111 0   112244777789


Q ss_pred             CHHHHHHHHHHhh
Q psy12002        135 QYKEAEEMFLLVQ  147 (164)
Q Consensus       135 ~~kEAEe~~l~Iq  147 (164)
                      ++++|.+.|...-
T Consensus        96 ~~~~A~~~~~~al  108 (126)
T 4gco_A           96 EWSKAQRAYEDAL  108 (126)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999988887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=88.56  E-value=2.3  Score=34.11  Aligned_cols=17  Identities=24%  Similarity=0.307  Sum_probs=8.1

Q ss_pred             HHHhcCHHHHHHHHHHh
Q psy12002        130 KCALGQYKEAEEMFLLV  146 (164)
Q Consensus       130 ~a~~g~~kEAEe~~l~I  146 (164)
                      +...|++++|.+.|..+
T Consensus       267 ~~~~g~~~~A~~~~~~~  283 (450)
T 2y4t_A          267 LIRDGRYTDATSKYESV  283 (450)
T ss_dssp             HHHHTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            33345555555554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=88.24  E-value=4.8  Score=29.77  Aligned_cols=132  Identities=11%  Similarity=0.039  Sum_probs=71.3

Q ss_pred             hhhhhhhhhccCc--chhhhhcccccccchh---hhHHH----------HHHHHHHHHHHHHhcCCchhHHHHHH-----
Q psy12002         11 DLIKHNLVVFRGG--EGALQVLPPLIDVIPE---SRLNL----------VIYHLKQAWDLYLTMDTSPESLQILQ-----   70 (164)
Q Consensus        11 dli~hNl~vFr~G--~~Al~vLp~L~~~~pe---ar~NL----------vi~~l~~Aw~lyl~~e~~~eaf~LLq-----   70 (164)
                      +++..=...++.|  +.|++.+...+...|.   +.+++          .+.  .+.-..|.+++..++|...++     
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLA--TELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3333334555655  6777777777776553   33330          000  012234455555555555444     


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhH------------HHHHHHHHhccccccch--
Q psy12002         71 ---------LIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGAC------------AGLMQMIMAGKENRLNV--  126 (164)
Q Consensus        71 ---------~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~------------ag~F~~~~~~~e~~Dnf--  126 (164)
                               .++...+..|++--|.+.|+-+-++||+ ++.|-. .|-+            ...|..++  ..++..+  
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~  160 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF-LGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYAR  160 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHHH
Confidence                     3445566799999999999998888886 454443 2111            11111111  0111111  


Q ss_pred             ---hHHHHHhcCHHHHHHHHHHhh
Q psy12002        127 ---PWAKCALGQYKEAEEMFLLVQ  147 (164)
Q Consensus       127 ---~qa~a~~g~~kEAEe~~l~Iq  147 (164)
                         +.+....|+|++|.+.|...-
T Consensus       161 ~~~g~~~~~~~~~~~A~~~~~~al  184 (208)
T 3urz_A          161 YRDGLSKLFTTRYEKARNSLQKVI  184 (208)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHH
Confidence               225566799999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=87.60  E-value=3.6  Score=33.71  Aligned_cols=19  Identities=26%  Similarity=0.174  Sum_probs=11.3

Q ss_pred             HHHHHhcCHHHHHHHHHHh
Q psy12002        128 WAKCALGQYKEAEEMFLLV  146 (164)
Q Consensus       128 qa~a~~g~~kEAEe~~l~I  146 (164)
                      +++...|++++|.+.|...
T Consensus       470 ~~~~~~g~~~~A~~~~~~a  488 (537)
T 3fp2_A          470 QLKLQMEKIDEAIELFEDS  488 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHH
Confidence            3555556777666665544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=87.47  E-value=4.4  Score=26.50  Aligned_cols=63  Identities=21%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHHHhh
Q psy12002         68 ILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFLLVQ  147 (164)
Q Consensus        68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l~Iq  147 (164)
                      .+-.++...+..|++-.|.+.|+-+-+.+|+....+.       +.          ..++.++...|++++|.+.|..+-
T Consensus        41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-------~~----------~~la~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG-------GL----------LKLGLSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH-------HH----------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH-------HH----------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3334555566677777777777776666655422111       00          112445555677777777766554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=87.37  E-value=4.5  Score=26.80  Aligned_cols=78  Identities=17%  Similarity=0.173  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhcccc----ccchhHHHHHhcC
Q psy12002         70 QLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKEN----RLNVPWAKCALGQ  135 (164)
Q Consensus        70 q~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~----~Dnf~qa~a~~g~  135 (164)
                      ...++.++..|++-.|.+.|...-+++|+ ++.|-++         -.-+...|..++.-..+    -.+++.++...|+
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~   87 (126)
T 3upv_A            8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE   87 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence            34455556666666666666655455543 3333321         11122222222221110    0112446677799


Q ss_pred             HHHHHHHHHHhh
Q psy12002        136 YKEAEEMFLLVQ  147 (164)
Q Consensus       136 ~kEAEe~~l~Iq  147 (164)
                      +++|.+.|...-
T Consensus        88 ~~~A~~~~~~al   99 (126)
T 3upv_A           88 YASALETLDAAR   99 (126)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988876543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=87.29  E-value=5  Score=31.35  Aligned_cols=23  Identities=0%  Similarity=-0.291  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC
Q psy12002         76 SYRRAKFWFAFKAFDMLERLEPL   98 (164)
Q Consensus        76 cY~~~~f~yA~kaFd~le~lD~~   98 (164)
                      +...|++-.|.+.|+-.-+++|+
T Consensus       187 ~~~~g~~~~A~~~~~~al~~~p~  209 (365)
T 4eqf_A          187 PVDSSVLEGVKELYLEAAHQNGD  209 (365)
T ss_dssp             --CCHHHHHHHHHHHHHHHHSCS
T ss_pred             HhhhhhHHHHHHHHHHHHHhCcC
Confidence            33356666666666665555554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=87.15  E-value=8.1  Score=29.21  Aligned_cols=77  Identities=19%  Similarity=0.155  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCc-cchh-------------hhHhhHHHHHHHHHhccc-ccc---chhHHHHHhc
Q psy12002         73 ANESYRRAKFWFAFKAFDMLERLEPLA-EYWE-------------GKRGACAGLMQMIMAGKE-NRL---NVPWAKCALG  134 (164)
Q Consensus        73 andcY~~~~f~yA~kaFd~le~lD~~p-e~~~-------------Gkrga~ag~F~~~~~~~e-~~D---nf~qa~a~~g  134 (164)
                      +...+..|++-.|.+.|+..-..+|+. +.|.             |+-.-...+|..++.... +.+   .++.++...|
T Consensus       241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (359)
T 3ieg_A          241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE  320 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence            555666777777777777766666553 2221             111122223332222111 111   1133666668


Q ss_pred             CHHHHHHHHHHhhcc
Q psy12002        135 QYKEAEEMFLLVQNE  149 (164)
Q Consensus       135 ~~kEAEe~~l~Iq~~  149 (164)
                      ++++|.+.|...-.-
T Consensus       321 ~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          321 MYDEAIQDYEAAQEH  335 (359)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            888887777766543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=86.83  E-value=2.1  Score=28.47  Aligned_cols=80  Identities=14%  Similarity=0.100  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhcccc----ccchhHHHHHh
Q psy12002         68 ILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKEN----RLNVPWAKCAL  133 (164)
Q Consensus        68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~----~Dnf~qa~a~~  133 (164)
                      .+..++..++..|++-.|.+.|...-+++|+ ++.|-.+         -.-+..+|..++.-..+    -..++.++...
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            3445555566666666666666655455544 3333321         11122233322221111    11234466777


Q ss_pred             cCHHHHHHHHHHhh
Q psy12002        134 GQYKEAEEMFLLVQ  147 (164)
Q Consensus       134 g~~kEAEe~~l~Iq  147 (164)
                      |++++|.+.|...-
T Consensus        91 ~~~~~A~~~~~~a~  104 (137)
T 3q49_B           91 ESYDEAIANLQRAY  104 (137)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999988876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.60  E-value=5.3  Score=34.98  Aligned_cols=44  Identities=25%  Similarity=0.397  Sum_probs=30.5

Q ss_pred             HHHHHhcCCchhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12002         53 WDLYLTMDTSPESLQIL---------QLIANESYRRAKFWFAFKAFDMLERLE   96 (164)
Q Consensus        53 w~lyl~~e~~~eaf~LL---------q~IandcY~~~~f~yA~kaFd~le~lD   96 (164)
                      +++.++.++-++|+.+.         +.+|..|-+.+++-.|+++|.-++..+
T Consensus       659 f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~  711 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLE  711 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH
T ss_pred             eehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChh
Confidence            44445555555554444         477888899999999999999876554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=86.57  E-value=5.6  Score=28.44  Aligned_cols=80  Identities=14%  Similarity=-0.002  Sum_probs=48.0

Q ss_pred             hhccCc--chhhhhcccccccchhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002         18 VVFRGG--EGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFK   87 (164)
Q Consensus        18 ~vFr~G--~~Al~vLp~L~~~~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~k   87 (164)
                      ..++.|  +.|+..+...++..|.+..|+...+.+.     |...|.+   .++..  ...+-.++...+..|++-.|.+
T Consensus        15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~   92 (213)
T 1hh8_A           15 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYYQTEKYDLAIK   92 (213)
T ss_dssp             HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcccHHHHHH
Confidence            344444  6677777666666777777777666544     3333332   22211  2233345566677888888888


Q ss_pred             HHHHHHhcCCCc
Q psy12002         88 AFDMLERLEPLA   99 (164)
Q Consensus        88 aFd~le~lD~~p   99 (164)
                      .|+..-+++|..
T Consensus        93 ~~~~al~~~~~~  104 (213)
T 1hh8_A           93 DLKEALIQLRGN  104 (213)
T ss_dssp             HHHHHHHTTTTC
T ss_pred             HHHHHHHhCCCc
Confidence            888876666553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=86.55  E-value=5.8  Score=31.38  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC
Q psy12002         75 ESYRRAKFWFAFKAFDMLERLEPL   98 (164)
Q Consensus        75 dcY~~~~f~yA~kaFd~le~lD~~   98 (164)
                      ..+..|++-.|.+.|+..-+++|+
T Consensus       246 ~~~~~g~~~~A~~~~~~al~~~p~  269 (388)
T 1w3b_A          246 VYYEQGLIDLAIDTYRRAIELQPH  269 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC
Confidence            344456666666666655455543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=86.48  E-value=6  Score=28.55  Aligned_cols=20  Identities=20%  Similarity=-0.013  Sum_probs=13.6

Q ss_pred             HHHHhcCHHHHHHHHHHhhc
Q psy12002        129 AKCALGQYKEAEEMFLLVQN  148 (164)
Q Consensus       129 a~a~~g~~kEAEe~~l~Iq~  148 (164)
                      ++...|++++|.+.+...-.
T Consensus       182 ~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          182 ALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHH
Confidence            55556888888777766543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=85.26  E-value=3.5  Score=33.35  Aligned_cols=83  Identities=14%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhh---------HhhHHHHHHHHHhcccccc-----chhHHHH
Q psy12002         66 LQILQLIANESYRRAKFWFAFKAFDMLERLEPLAEYWEGK---------RGACAGLMQMIMAGKENRL-----NVPWAKC  131 (164)
Q Consensus        66 f~LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe~~~Gk---------rga~ag~F~~~~~~~e~~D-----nf~qa~a  131 (164)
                      -..+...++..+..|++-.|.+.|+-.-..+|+++.|-++         -..+..+|..++.-. |..     ..+.++.
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            3455667788888888888888888877888877777642         222333444333321 211     1234777


Q ss_pred             HhcCHHHHHHHHHHhhcc
Q psy12002        132 ALGQYKEAEEMFLLVQNE  149 (164)
Q Consensus       132 ~~g~~kEAEe~~l~Iq~~  149 (164)
                      ..|++++|.+.|..+-.-
T Consensus        85 ~~g~~~~A~~~~~~~~~~  102 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLN  102 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHS
T ss_pred             HHhhHHHHHHHHHHHHhc
Confidence            889999999998876443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=84.93  E-value=3.8  Score=37.96  Aligned_cols=137  Identities=14%  Similarity=0.105  Sum_probs=77.0

Q ss_pred             cchhhhhhh-h--hhccCc--chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHH
Q psy12002          8 DNHDLIKHN-L--VVFRGG--EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQL   71 (164)
Q Consensus         8 ~~~dli~hN-l--~vFr~G--~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~   71 (164)
                      .+++.-.+| |  +..+.|  +.|++.+...++.   .+++..||..-+.+.     |.+.|.+   .++..  ...+-.
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~n   82 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN   82 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence            344444444 4  444455  5666666655553   467888887665554     4444433   23221  112234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchh---------hhHhhHHHHHHHHHhccc-c---ccchhHHHHHhcCHH
Q psy12002         72 IANESYRRAKFWFAFKAFDMLERLEPL-AEYWE---------GKRGACAGLMQMIMAGKE-N---RLNVPWAKCALGQYK  137 (164)
Q Consensus        72 IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~---------Gkrga~ag~F~~~~~~~e-~---~Dnf~qa~a~~g~~k  137 (164)
                      +++....+|++-.|.++|+-.-++||+ ++.|-         |+-.-...+|...+.-+. .   -.++..++..+|+|+
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            566677799999999999887777765 34443         222333444444333221 1   112345777889999


Q ss_pred             HHHHHHHHh
Q psy12002        138 EAEEMFLLV  146 (164)
Q Consensus       138 EAEe~~l~I  146 (164)
                      +|++.+...
T Consensus       163 ~A~~~~~ka  171 (723)
T 4gyw_A          163 DYDERMKKL  171 (723)
T ss_dssp             THHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998876543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=84.56  E-value=9.2  Score=27.45  Aligned_cols=20  Identities=15%  Similarity=-0.014  Sum_probs=11.9

Q ss_pred             HHHHhcCHHHHHHHHHHhhc
Q psy12002        129 AKCALGQYKEAEEMFLLVQN  148 (164)
Q Consensus       129 a~a~~g~~kEAEe~~l~Iq~  148 (164)
                      ++...|++++|.+.+..+-.
T Consensus       202 ~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          202 TYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHc
Confidence            44455777777666665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=84.38  E-value=11  Score=28.38  Aligned_cols=72  Identities=13%  Similarity=-0.025  Sum_probs=36.3

Q ss_pred             chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002         24 EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDML   92 (164)
Q Consensus        24 ~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~l   92 (164)
                      +.|+..+...++..   |++..++...+...     |...|.+   .++..  ...+..++..++..|++-.|.+.|+..
T Consensus        20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~   97 (359)
T 3ieg_A           20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF--TAARLQRGHLLLKQGKLDEAEDDFKKV   97 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--chHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            55666665555433   44555555544443     3333322   22211  123334455555667777777777666


Q ss_pred             HhcCC
Q psy12002         93 ERLEP   97 (164)
Q Consensus        93 e~lD~   97 (164)
                      -+++|
T Consensus        98 ~~~~~  102 (359)
T 3ieg_A           98 LKSNP  102 (359)
T ss_dssp             HTSCC
T ss_pred             HhcCC
Confidence            66665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=84.34  E-value=6.4  Score=28.65  Aligned_cols=35  Identities=17%  Similarity=0.010  Sum_probs=21.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12002         60 DTSPESLQILQLIANESYRRAKFWFAFKAFDMLER   94 (164)
Q Consensus        60 e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~   94 (164)
                      ++.+.....+..++..++..|++-.|.+.|.-.-.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33344455555666666677777777777665433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=84.28  E-value=5.9  Score=28.19  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             hhccCc--chhhhhcccccccc---hhhhHHHHHHHHHH
Q psy12002         18 VVFRGG--EGALQVLPPLIDVI---PESRLNLVIYHLKQ   51 (164)
Q Consensus        18 ~vFr~G--~~Al~vLp~L~~~~---pear~NLvi~~l~~   51 (164)
                      ..++.|  +.|++.+...++..   |++..+|...+.+.
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~   53 (176)
T 2r5s_A           15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET   53 (176)
T ss_dssp             HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC
Confidence            344444  67777777776643   45566666555443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=84.12  E-value=11  Score=27.97  Aligned_cols=81  Identities=17%  Similarity=0.125  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------ch-------------------------hhhHhhHHHHHHHH
Q psy12002         68 ILQLIANESYRRAKFWFAFKAFDMLERLEPLAE------YW-------------------------EGKRGACAGLMQMI  116 (164)
Q Consensus        68 LLq~IandcY~~~~f~yA~kaFd~le~lD~~pe------~~-------------------------~Gkrga~ag~F~~~  116 (164)
                      .+-.++...|..|++--|.+.|+-+-+.+|+..      ++                         .|...-....|..+
T Consensus        43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  122 (225)
T 2yhc_A           43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL  122 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence            333455556667777777777777666666532      11                         13334455666665


Q ss_pred             Hhccccccc---------------------hhHHHHHhcCHHHHHHHHHHhhc
Q psy12002        117 MAGKENRLN---------------------VPWAKCALGQYKEAEEMFLLVQN  148 (164)
Q Consensus       117 ~~~~e~~Dn---------------------f~qa~a~~g~~kEAEe~~l~Iq~  148 (164)
                      +....+...                     .+..+...|+|.+|.+.|..+-+
T Consensus       123 l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  175 (225)
T 2yhc_A          123 VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR  175 (225)
T ss_dssp             HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            554422211                     12244556999999888887654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=83.80  E-value=6.7  Score=25.27  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=16.3

Q ss_pred             hHHHHHhcCHHHHHHHHHHhhc
Q psy12002        127 PWAKCALGQYKEAEEMFLLVQN  148 (164)
Q Consensus       127 ~qa~a~~g~~kEAEe~~l~Iq~  148 (164)
                      +.++...|++++|.+.|...-.
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            4466677999999888876543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=83.50  E-value=6.7  Score=30.59  Aligned_cols=88  Identities=10%  Similarity=0.078  Sum_probs=48.8

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccchhhhHhhHHHHHHHHHhccccccchhHHH
Q psy12002         52 AWDLYLTMDTSPESLQILQLIANESYRR-AKFWFAFKAFDMLERLEPLAEYWEGKRGACAGLMQMIMAGKENRLNVPWAK  130 (164)
Q Consensus        52 Aw~lyl~~e~~~eaf~LLq~IandcY~~-~~f~yA~kaFd~le~lD~~pe~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~  130 (164)
                      |.+++.+.++...+-..+..++...... |++-.|.+.|+-.-.++|..    |.....+.++.          +++.++
T Consensus       103 Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~~----------~lg~~~  168 (292)
T 1qqe_A          103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFI----------KCADLK  168 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHH----------HHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHHH----------HHHHHH
Confidence            5555555555555555555555555554 66666666666543433321    11111122222          346688


Q ss_pred             HHhcCHHHHHHHHHHhhcccccC
Q psy12002        131 CALGQYKEAEEMFLLVQNEGLKN  153 (164)
Q Consensus       131 a~~g~~kEAEe~~l~Iq~~~~kn  153 (164)
                      ..+|+|++|.+.+..+-.-...+
T Consensus       169 ~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          169 ALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHhCCHHHHHHHHHHHHHHHhcC
Confidence            88899999999988766543333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=83.46  E-value=9.4  Score=26.71  Aligned_cols=80  Identities=13%  Similarity=0.024  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhh---------HhhHHHHHHHHHhcccc----ccchhHHHHHhc
Q psy12002         69 LQLIANESYRRAKFWFAFKAFDMLERLEPLA-EYWEGK---------RGACAGLMQMIMAGKEN----RLNVPWAKCALG  134 (164)
Q Consensus        69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~~Gk---------rga~ag~F~~~~~~~e~----~Dnf~qa~a~~g  134 (164)
                      +..++...+..|++-.|.+.+......+|+. +.|...         -......+...+.-..+    ...++.++...|
T Consensus        42 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g  121 (184)
T 3vtx_A           42 LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMG  121 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhC
Confidence            3455666777999999999999887877764 333321         11122222222221111    111244777779


Q ss_pred             CHHHHHHHHHHhhc
Q psy12002        135 QYKEAEEMFLLVQN  148 (164)
Q Consensus       135 ~~kEAEe~~l~Iq~  148 (164)
                      ++++|.+.|..+-.
T Consensus       122 ~~~~A~~~~~~~l~  135 (184)
T 3vtx_A          122 EHDKAIEAYEKTIS  135 (184)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHH
Confidence            99999999876654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=83.45  E-value=11  Score=27.56  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=17.0

Q ss_pred             hHHHHHhcCHHHHHHHHHHhhcc
Q psy12002        127 PWAKCALGQYKEAEEMFLLVQNE  149 (164)
Q Consensus       127 ~qa~a~~g~~kEAEe~~l~Iq~~  149 (164)
                      +.++...|++++|.+.|...-.-
T Consensus       222 a~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          222 GKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhC
Confidence            34666779999999888776544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=83.27  E-value=15  Score=28.94  Aligned_cols=128  Identities=16%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             hhccCc--chhhhhcccccccchhhhHHHHHHHHHH-----HHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002         18 VVFRGG--EGALQVLPPLIDVIPESRLNLVIYHLKQ-----AWDLY---LTMDTSPESLQILQLIANESYRRAKFWFAFK   87 (164)
Q Consensus        18 ~vFr~G--~~Al~vLp~L~~~~pear~NLvi~~l~~-----Aw~ly---l~~e~~~eaf~LLq~IandcY~~~~f~yA~k   87 (164)
                      ...+.|  +.|++.+..  ...+++.++++..+.+.     |-..+   ++.++.+.-..+.....+-..+.|.+-.|.+
T Consensus       110 ~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~  187 (291)
T 3mkr_A          110 IYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY  187 (291)
T ss_dssp             HHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence            334444  778888777  56677877776544433     22222   2222222112222222232333588999999


Q ss_pred             HHHHHHhcCCC-ccchhh---------hHhhHHHHHHHHHhccc-cccch---hHHHHHhcCHHH-HHHHHHHhh
Q psy12002         88 AFDMLERLEPL-AEYWEG---------KRGACAGLMQMIMAGKE-NRLNV---PWAKCALGQYKE-AEEMFLLVQ  147 (164)
Q Consensus        88 aFd~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~e-~~Dnf---~qa~a~~g~~kE-AEe~~l~Iq  147 (164)
                      .|+-+-..+|+ ++.|.+         +-.-+...|..++.... +.+.+   ..+....|++.| +++++..+.
T Consensus       188 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99887666554 444443         22233444554444322 22222   235666799876 577775543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=82.97  E-value=6.6  Score=33.37  Aligned_cols=120  Identities=14%  Similarity=0.013  Sum_probs=72.1

Q ss_pred             chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHH---hcCCchhHHHHHHHHHHHHHHH---------HHHH
Q psy12002         24 EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYL---TMDTSPESLQILQLIANESYRR---------AKFW   83 (164)
Q Consensus        24 ~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl---~~e~~~eaf~LLq~IandcY~~---------~~f~   83 (164)
                      +.|++.+...++.   .+++..||...+.+.     |...|.   +.++.   ...+..++...+..         |++-
T Consensus       120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~  196 (474)
T 4abn_A          120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVM  196 (474)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---HHHHHHHHHHHTTCCCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHhccCChhhhhhhHH
Confidence            5666666655543   456788887777666     444443   34433   25555666666677         9999


Q ss_pred             HHHHHHHHHHhcCCC-ccchhhh-----------------HhhHHHHHHHHHhcccc---cc-----chhHHHHHhcCHH
Q psy12002         84 FAFKAFDMLERLEPL-AEYWEGK-----------------RGACAGLMQMIMAGKEN---RL-----NVPWAKCALGQYK  137 (164)
Q Consensus        84 yA~kaFd~le~lD~~-pe~~~Gk-----------------rga~ag~F~~~~~~~e~---~D-----nf~qa~a~~g~~k  137 (164)
                      .|.+.|.-.-++||+ ++.|-..                 -.-+..+|...+.- .|   .+     +++.++...|+++
T Consensus       197 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~lg~~~~~~g~~~  275 (474)
T 4abn_A          197 DSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-DRKASSNPDLHLNRATLHKYEESYG  275 (474)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-CGGGGGCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-CCCcccCHHHHHHHHHHHHHcCCHH
Confidence            999999887777776 4555432                 22223333333322 12   11     1234667779999


Q ss_pred             HHHHHHHHhh
Q psy12002        138 EAEEMFLLVQ  147 (164)
Q Consensus       138 EAEe~~l~Iq  147 (164)
                      +|.+.|...-
T Consensus       276 ~A~~~~~~al  285 (474)
T 4abn_A          276 EALEGFSQAA  285 (474)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=82.37  E-value=13  Score=27.40  Aligned_cols=79  Identities=9%  Similarity=0.022  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhh--H----------hhHHHHHHHHHhcc--ccccc----------
Q psy12002         71 LIANESYRRAKFWFAFKAFDMLERLEPLA-EYWEGK--R----------GACAGLMQMIMAGK--ENRLN----------  125 (164)
Q Consensus        71 ~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~~Gk--r----------ga~ag~F~~~~~~~--e~~Dn----------  125 (164)
                      .++..||..+++-.|.+.|...-+++|+. +.|-.+  -          .-....|...+.-.  .++.+          
T Consensus       147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  226 (272)
T 3u4t_A          147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY  226 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            45556788888888888888877777663 333221  0          00122233222211  12211          


Q ss_pred             hhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002        126 VPWAKCALGQYKEAEEMFLLVQNE  149 (164)
Q Consensus       126 f~qa~a~~g~~kEAEe~~l~Iq~~  149 (164)
                      ++.++...|++++|.+.+..+-.-
T Consensus       227 l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          227 IAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc
Confidence            234566679999998888776543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=82.02  E-value=12  Score=26.84  Aligned_cols=124  Identities=16%  Similarity=0.079  Sum_probs=63.5

Q ss_pred             chhhhhcccccccc---hhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002         24 EGALQVLPPLIDVI---PESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFDML   92 (164)
Q Consensus        24 ~~Al~vLp~L~~~~---pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~l   92 (164)
                      +.|+..+...++..   +++..++...+.+.     |...|.+   .++.  .......++..++..|++-.|.+.|+-.
T Consensus        40 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~  117 (243)
T 2q7f_A           40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS--AATAYYGAGNVYVVKEMYKEAKDMFEKA  117 (243)
T ss_dssp             --CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            56666666655543   45555555444333     3333322   2211  1223334566677789999999988887


Q ss_pred             HhcCCC-ccchhhh---------HhhHHHHHHHHHhcccc-c---cchhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002         93 ERLEPL-AEYWEGK---------RGACAGLMQMIMAGKEN-R---LNVPWAKCALGQYKEAEEMFLLVQNE  149 (164)
Q Consensus        93 e~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~-~---Dnf~qa~a~~g~~kEAEe~~l~Iq~~  149 (164)
                      -+.+|. ++.|...         -.-....|...+....+ .   ..+..++...|++++|.+.+..+-+.
T Consensus       118 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666654 4444321         11122223322221111 1   11234666779999999998776544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=81.74  E-value=7.7  Score=30.65  Aligned_cols=9  Identities=11%  Similarity=0.110  Sum_probs=3.5

Q ss_pred             cCHHHHHHH
Q psy12002        134 GQYKEAEEM  142 (164)
Q Consensus       134 g~~kEAEe~  142 (164)
                      |.+.+|.+.
T Consensus       217 ~~~~~A~~~  225 (388)
T 1w3b_A          217 RIFDRAVAA  225 (388)
T ss_dssp             TCTTHHHHH
T ss_pred             CCHHHHHHH
Confidence            334444333

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=81.67  E-value=9.8  Score=25.65  Aligned_cols=125  Identities=12%  Similarity=0.110  Sum_probs=65.0

Q ss_pred             Ccchhhhhcccccccch---hhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12002         22 GGEGALQVLPPLIDVIP---ESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWFAFKAFD   90 (164)
Q Consensus        22 ~G~~Al~vLp~L~~~~p---ear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~yA~kaFd   90 (164)
                      +-+.|++.+...++..|   .+..++...+...     |.+++.+   ..+.  ....+..++..++..|++-.|.+.|+
T Consensus        23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~  100 (186)
T 3as5_A           23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLGLTYVQVQKYDLAVPLLI  100 (186)
T ss_dssp             CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            34678887777776544   4444444333322     2222222   2111  11223344555677889999999888


Q ss_pred             HHHhcCCC-ccchhh---------hHhhHHHHHHHHHhcccccc-----chhHHHHHhcCHHHHHHHHHHhhcc
Q psy12002         91 MLERLEPL-AEYWEG---------KRGACAGLMQMIMAGKENRL-----NVPWAKCALGQYKEAEEMFLLVQNE  149 (164)
Q Consensus        91 ~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~e~~D-----nf~qa~a~~g~~kEAEe~~l~Iq~~  149 (164)
                      ..-+.+|. ++.|-.         +-..+..+|...+... |.+     .+..++...|++++|.+.+..+-..
T Consensus       101 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            87666654 344332         1112223333322221 111     1133666679999999888776443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.51  E-value=9.1  Score=25.19  Aligned_cols=61  Identities=10%  Similarity=-0.154  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhhHhhHHHHHHHHHhccccccchhHHHHHhcCHHHHHHHHH
Q psy12002         66 LQILQLIANESYRRAKFWFAFKAFDMLERLEPLA-EYWEGKRGACAGLMQMIMAGKENRLNVPWAKCALGQYKEAEEMFL  144 (164)
Q Consensus        66 f~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p-e~~~Gkrga~ag~F~~~~~~~e~~Dnf~qa~a~~g~~kEAEe~~l  144 (164)
                      ..++..++...+..|++-.|.+.|+..-+++|+. +.|-                     .+..++...|++++|.+.|.
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------------~~a~~~~~~~~~~~A~~~~~  123 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY---------------------RRSQALEKLGRLDQAVLDLQ  123 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH---------------------HHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH---------------------HHHHHHHHcCCHHHHHHHHH
Confidence            4444455555666777777777776655555432 1111                     12335555677777777766


Q ss_pred             Hhh
Q psy12002        145 LVQ  147 (164)
Q Consensus       145 ~Iq  147 (164)
                      ..-
T Consensus       124 ~al  126 (148)
T 2dba_A          124 RCV  126 (148)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=81.37  E-value=10  Score=25.88  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhcc-cccc----------c
Q psy12002         67 QILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGK-ENRL----------N  125 (164)
Q Consensus        67 ~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~-e~~D----------n  125 (164)
                      .-.+-+.+..|+.|+|-.|.+.|+-.-.+||+ ++.|-++         -.-+...|...+.-. ++..          +
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            33455666677777777777777665555554 3444431         011122222222110 1111          1


Q ss_pred             hhHHHHHhcCHHHHHHHHHHh
Q psy12002        126 VPWAKCALGQYKEAEEMFLLV  146 (164)
Q Consensus       126 f~qa~a~~g~~kEAEe~~l~I  146 (164)
                      .+.++...|++++|.+.|...
T Consensus        89 lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            234667779999998887654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=80.24  E-value=12  Score=25.91  Aligned_cols=31  Identities=19%  Similarity=0.180  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12002         65 SLQILQLIANESYRRAKFWFAFKAFDMLERL   95 (164)
Q Consensus        65 af~LLq~IandcY~~~~f~yA~kaFd~le~l   95 (164)
                      .-..++..++..|+.|++-.|.+.|.-.-++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~   40 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTR   40 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556778889999999999999988875555

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=80.18  E-value=7.8  Score=27.34  Aligned_cols=87  Identities=18%  Similarity=0.078  Sum_probs=51.8

Q ss_pred             hhccCc--chhhhhccccccc---chhhhHHHHHHHHHH-----HHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHH
Q psy12002         18 VVFRGG--EGALQVLPPLIDV---IPESRLNLVIYHLKQ-----AWDLYLT---MDTSPESLQILQLIANESYRRAKFWF   84 (164)
Q Consensus        18 ~vFr~G--~~Al~vLp~L~~~---~pear~NLvi~~l~~-----Aw~lyl~---~e~~~eaf~LLq~IandcY~~~~f~y   84 (164)
                      +.++.|  +.|+..+...+..   .|++..||..-+.+.     |...|.+   .++...  ..+-.++...+.+|++-.
T Consensus        30 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~~~~~~g~~~~  107 (148)
T 2vgx_A           30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--RFPFHAAECLLQXGELAE  107 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHcCCHHH
Confidence            445555  6777777776664   455566665544333     4444433   222221  112234555677999999


Q ss_pred             HHHHHHHHHhcCCC-ccchhhhH
Q psy12002         85 AFKAFDMLERLEPL-AEYWEGKR  106 (164)
Q Consensus        85 A~kaFd~le~lD~~-pe~~~Gkr  106 (164)
                      |.+.|+..-+++|+ |++.+.+.
T Consensus       108 A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A          108 AESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHHHCcCCCcchHHHH
Confidence            99999987777664 77777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	93.02
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.02
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	88.59
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	88.22
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	86.31
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	84.49
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	84.19
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	81.71
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	81.35

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.21  Score=34.38  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhh---------hHhhHHHHHHHHHhccccccch-----hHHHH
Q psy12002         67 QILQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEG---------KRGACAGLMQMIMAGKENRLNV-----PWAKC  131 (164)
Q Consensus        67 ~LLq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~e~~Dnf-----~qa~a  131 (164)
                      .-|+.-+|.+|+.|.|--|...|.-.-.+||+ ++.|..         +-.-+..+|...+.-. |.+.-     +.++.
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            33556799999999999999999998888876 355543         2223344444433322 22111     34677


Q ss_pred             HhcCHHHHHHHHHHhhc
Q psy12002        132 ALGQYKEAEEMFLLVQN  148 (164)
Q Consensus       132 ~~g~~kEAEe~~l~Iq~  148 (164)
                      .+|+|.||.+.+..+..
T Consensus        90 ~~g~~~eA~~~~~~a~~  106 (159)
T d1a17a_          90 ALGKFRAALRDYETVVK  106 (159)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            77999999888877654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.6  Score=30.73  Aligned_cols=92  Identities=12%  Similarity=0.033  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhccccccch-----hHHHHHh
Q psy12002         69 LQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKENRLNV-----PWAKCAL  133 (164)
Q Consensus        69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e~~Dnf-----~qa~a~~  133 (164)
                      |+..+|.++..|.+-.|...|+..=..||. ++.|..+         -......|...+.- .|.+.-     +.++..+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh-ccchhhHHHHHHHHHHHc
Confidence            577899999999999999999986666664 5666642         11222222222211 122222     3377777


Q ss_pred             cCHHHHHHHHHHhhcccccCchhhhhhcc
Q psy12002        134 GQYKEAEEMFLLVQNEGLKNDYVYISHLT  162 (164)
Q Consensus       134 g~~kEAEe~~l~Iq~~~~kn~~~y~swl~  162 (164)
                      |++.+|...+...-.-. .++..+...+.
T Consensus        85 ~~~~~A~~~~~~a~~~~-p~~~~~~~~l~  112 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHE-ANNPQLKEGLQ  112 (117)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            99999999988776433 33344444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.59  E-value=1.3  Score=29.91  Aligned_cols=79  Identities=10%  Similarity=0.020  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhh------------hHhhHHHHHHHHHhcccccc------chhHH
Q psy12002         69 LQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEG------------KRGACAGLMQMIMAGKENRL------NVPWA  129 (164)
Q Consensus        69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~G------------krga~ag~F~~~~~~~e~~D------nf~qa  129 (164)
                      |+-++|..+.++.|-.|.+.|.-.-.+||+ ++..-.            ...-.+..|..++....+++      +++.+
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            467889999999999999999986677765 444331            11124555665555432222      34557


Q ss_pred             HHHhcCHHHHHHHHHHhh
Q psy12002        130 KCALGQYKEAEEMFLLVQ  147 (164)
Q Consensus       130 ~a~~g~~kEAEe~~l~Iq  147 (164)
                      +..+|+|++|.+++..+-
T Consensus        82 y~~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHH
Confidence            778899999999987653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=3.3  Score=30.01  Aligned_cols=34  Identities=12%  Similarity=0.068  Sum_probs=19.2

Q ss_pred             hhccCc--chhhhhcccccccc---hhhhHHHHHHHHHH
Q psy12002         18 VVFRGG--EGALQVLPPLIDVI---PESRLNLVIYHLKQ   51 (164)
Q Consensus        18 ~vFr~G--~~Al~vLp~L~~~~---pear~NLvi~~l~~   51 (164)
                      ..|++|  +.|+..+...++..   +++..+|..-+...
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   66 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN   66 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            455555  66666666666644   34566665544443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=2.8  Score=30.07  Aligned_cols=74  Identities=16%  Similarity=0.096  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCc-cchh---------hhHhhHHHHHHHHHhcccc----ccchhHHHHHhcCHHH
Q psy12002         73 ANESYRRAKFWFAFKAFDMLERLEPLA-EYWE---------GKRGACAGLMQMIMAGKEN----RLNVPWAKCALGQYKE  138 (164)
Q Consensus        73 andcY~~~~f~yA~kaFd~le~lD~~p-e~~~---------Gkrga~ag~F~~~~~~~e~----~Dnf~qa~a~~g~~kE  138 (164)
                      +......|++..|.+.|+.....+|.. +.|.         |+-.-...+|...+.-..+    -.++++++...|++++
T Consensus       278 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            344455667777777776665555543 2222         1111223333332221111    1112346666688888


Q ss_pred             HHHHHHHh
Q psy12002        139 AEEMFLLV  146 (164)
Q Consensus       139 AEe~~l~I  146 (164)
                      |.+.|...
T Consensus       358 A~~~~~~a  365 (388)
T d1w3ba_         358 ALMHYKEA  365 (388)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87777654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.49  E-value=1.1  Score=30.31  Aligned_cols=65  Identities=17%  Similarity=0.173  Sum_probs=50.4

Q ss_pred             ccchhhhHHHHHHHH-----H---HHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy12002         35 DVIPESRLNLVIYHL-----K---QAWDLYLTM---DTSPESLQILQLIANESYRRAKFWFAFKAFDMLERLEPLA   99 (164)
Q Consensus        35 ~~~pear~NLvi~~l-----~---~Aw~lyl~~---e~~~eaf~LLq~IandcY~~~~f~yA~kaFd~le~lD~~p   99 (164)
                      ...|+++.|+....+     +   +|..+|.+.   ++.++....+-.++..++.+|++-.|.++|+.+=++||+.
T Consensus        30 p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          30 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC
Confidence            357899999997653     2   288888764   4444545677778999999999999999999988888764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.19  E-value=1.7  Score=29.53  Aligned_cols=76  Identities=17%  Similarity=0.184  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhhHhhH----------HHHHHHHHhcccccc-----chhHHHHH
Q psy12002         69 LQLIANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGKRGAC----------AGLMQMIMAGKENRL-----NVPWAKCA  132 (164)
Q Consensus        69 Lq~IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gkrga~----------ag~F~~~~~~~e~~D-----nf~qa~a~  132 (164)
                      |+...|..|+.|.|-.|.+.|.-.=.+||+ +..|-+ +|.|          .-+|...+.- .|..     +++.++-.
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~-lg~~y~~~~~~~~Ai~~~~~al~l-~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTN-RALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh-HHHHHhhhhhhhhhhHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence            445678889999999999999765556654 566664 3322          1112211110 1211     12347777


Q ss_pred             hcCHHHHHHHHHHh
Q psy12002        133 LGQYKEAEEMFLLV  146 (164)
Q Consensus       133 ~g~~kEAEe~~l~I  146 (164)
                      +|+|.+|.+.|...
T Consensus        85 l~~~~~A~~~~~~a   98 (201)
T d2c2la1          85 MESYDEAIANLQRA   98 (201)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            89999998887643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.71  E-value=2  Score=30.91  Aligned_cols=79  Identities=19%  Similarity=0.061  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhh---------HhhHHHHHHHHHhccc-cc---cchhHHHHHhcCHH
Q psy12002         72 IANESYRRAKFWFAFKAFDMLERLEPL-AEYWEGK---------RGACAGLMQMIMAGKE-NR---LNVPWAKCALGQYK  137 (164)
Q Consensus        72 IandcY~~~~f~yA~kaFd~le~lD~~-pe~~~Gk---------rga~ag~F~~~~~~~e-~~---Dnf~qa~a~~g~~k  137 (164)
                      +|+..|+.|+|-.|.+.|.-+-+.||+ ++.|..+         -.-+..+|..++.... ..   ..++.++...|+++
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence            455566666666666666555445543 3333321         1112222222222110 00   11234666678888


Q ss_pred             HHHHHHHHhhccc
Q psy12002        138 EAEEMFLLVQNEG  150 (164)
Q Consensus       138 EAEe~~l~Iq~~~  150 (164)
                      +|.+.+.......
T Consensus        85 ~A~~~~~~~~~~~   97 (388)
T d1w3ba_          85 EAIEHYRHALRLK   97 (388)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             ccccccccccccc
Confidence            8888777665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.35  E-value=2.1  Score=27.71  Aligned_cols=73  Identities=15%  Similarity=0.089  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhh---------hHhhHHHHHHHHHhcccccc----chhHHHHHhcCHHH
Q psy12002         73 ANESYRRAKFWFAFKAFDMLERLEPL-AEYWEG---------KRGACAGLMQMIMAGKENRL----NVPWAKCALGQYKE  138 (164)
Q Consensus        73 andcY~~~~f~yA~kaFd~le~lD~~-pe~~~G---------krga~ag~F~~~~~~~e~~D----nf~qa~a~~g~~kE  138 (164)
                      +-..++.|++-.|...|+.+-+.+|+ ++.|-.         +-.....+|...+.-..+..    +++.++...|++++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence            33456677777777777776666664 444442         12233334443333221111    12335555689999


Q ss_pred             HHHHHHH
Q psy12002        139 AEEMFLL  145 (164)
Q Consensus       139 AEe~~l~  145 (164)
                      |.++|..
T Consensus       103 A~~~l~~  109 (112)
T d1hxia_         103 ALASLRA  109 (112)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888764