Psyllid ID: psy12100

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPVL
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccccccEEEcccccccHHHHHHHHHHcccccEEEEEccccccccccEEEEEEEcccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHcHEEEEccccHHcccccEEEEEEcccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meeekalsvapykklaggvkfletiprnpagkvsptELENIIMQIAGVADVavvgvpdtlsgevpkafvvkkpgveltEQEISsyvepkkpvl
Flexible Loop (DISEMBL)
meeekalsvapykklaggvkfletiprnpagkvSPTELENIIMQIAGVADVAVVGVPDTlsgevpkafvvkkpgvelteqeissyvepkkpvl
Low Complexity Region (SEG)
MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIagvadvavvgvPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPVL
Disordered region (IsUnstruct)
***********YKKLAGGVKFLETIPRN*AGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP********************
Disordered Region (DISOPRED)
MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPVL
Disordered Region (DISEMBL)
*********APYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPVL
Disordered Region (DISPRO)
******LSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
P96575	503	Putative acyl--CoA ligase	yes	N/A	0.623	0.115	0.431	5e-08
Q7F1X5	542	4-coumarate--CoA ligase-l	yes	N/A	0.580	0.099	0.436	9e-08
Q8RU95	598	4-coumarate--CoA ligase-l	no	N/A	0.655	0.102	0.446	3e-07
P08659	550	Luciferin 4-monooxygenase	N/A	N/A	0.731	0.123	0.397	9e-07
Q7XXL2	555	4-coumarate--CoA ligase-l	no	N/A	0.623	0.104	0.465	1e-06
Q84P23	562	4-coumarate--CoA ligase-l	yes	N/A	0.720	0.119	0.426	1e-06
Q01158	548	Luciferin 4-monooxygenase	N/A	N/A	0.731	0.124	0.382	2e-06
P13129	548	Luciferin 4-monooxygenase	N/A	N/A	0.731	0.124	0.382	2e-06
Q26304	548	Luciferin 4-monooxygenase	N/A	N/A	0.763	0.129	0.380	3e-06
Q6ETN3	554	Probable 4-coumarate--CoA	no	N/A	0.731	0.122	0.411	3e-06

>sp|P96575|YDAB_BACSU Putative acyl--CoA ligase YdaB OS=Bacillus subtilis (strain 168) GN=ydaB PE=3 SV=2

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 40/58 (68%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
            V P ++E +I QI G+ + AVVG+PD L GE PKAF+VK  G  +TE+++ ++ + +
Sbjct: 411 NVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFIVKNGGQRITEEDVIAFCKER 468

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q7F1X5|4CLL5_ORYSJ 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 39/55 (70%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           +V P ELE+I+    G+AD AV+  PD  +GE+P AF+V++PG  +T++++  YV
Sbjct: 444 QVPPAELEHILQSHPGIADAAVIPYPDEEAGELPMAFIVRQPGSNITKEQVMDYV 498

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8RU95|4CLL6_ORYSJ 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 4/65 (6%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQE----ISSYVE 87
           +V P ELE+I+     +AD AVV  PD  +G++P AFVV++PG  LTEQ+    ++ +V 
Sbjct: 501 QVPPAELEHILQSRPEIADAAVVPYPDEEAGQLPMAFVVRQPGAYLTEQQVMNCVAKHVA 560

Query: 88  PKKPV 92
           P K V
Sbjct: 561 PYKKV 565

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P08659|LUCI_PHOPY Luciferin 4-monooxygenase OS=Photinus pyralis PE=1 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%)

Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V+P ELE+I++Q   + D  V G+PD  +GE+P A VV + G  +T
Sbjct: 435 VDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 494

Query: 79  EQEISSYV 86
           E+EI  YV
Sbjct: 495 EKEIVDYV 502

Produces green light with a wavelength of 562 nm.

Photinus pyralis (taxid: 7054)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q7XXL2|4CLL9_ORYSJ 4-coumarate--CoA ligase-like 9 OS=Oryza sativa subsp. japonica GN=4CLL9 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           +V+P ELE +++    V D AV GVPD  +GEVP A VV++ G E  E+EI +YV  +
Sbjct: 457 QVAPAELEAVLLSHPSVEDAAVFGVPDEEAGEVPVACVVRRHGAEEGEEEIVAYVAER 514

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%)

Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78
           V  L+ + +  A +V P ELE I+     V D AVV  PD  +GE+P AF+V+KPG  L 
Sbjct: 451 VDRLKELIKYKAYQVPPVELEQILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLN 510

Query: 79  EQEISSYV 86
           E +I  +V
Sbjct: 511 EAQIIDFV 518

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q01158|LUCI_LUCLA Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V P ELE++++Q   + D  V GVPD ++GE+P A VV + G  +T
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPIAGELPGAVVVLEKGKSMT 496

Query: 79  EQEISSYV 86
           E+E+  YV
Sbjct: 497 EKEVMDYV 504

Produces green light.

Luciola lateralis (taxid: 7052)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|P13129|LUCI_LUCCR Luciferin 4-monooxygenase OS=Luciola cruciata PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V P ELE++++Q   + D  V GVPD ++GE+P A VV + G  +T
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496

Query: 79  EQEISSYV 86
           E+E+  YV
Sbjct: 497 EKEVMDYV 504

Produces green light with a wavelength of 544 nm.

Luciola cruciata (taxid: 7051)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q26304|LUCI_LUCMI Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V P ELE++++Q   + D  V GVPD  +GE+P A VV + G  +T
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPDAGELPGAVVVMEKGKTMT 496

Query: 79  EQEISSYVEPK 89
           E+EI  YV  +
Sbjct: 497 EKEIVDYVNSQ 507

Produces green light with a wavelength of 570 nm.

Luciola mingrelica (taxid: 27446)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q6ETN3|4CL3_ORYSJ Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%)

Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78
           V  L+ I +    +V P ELE +++    + D AVV + D L+GEVP AF+V+  G E+T
Sbjct: 432 VDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEIT 491

Query: 79  EQEISSYV 86
           E EI  +V
Sbjct: 492 EDEIKKFV 499

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
328708451	611	PREDICTED: 4-coumarate--CoA ligase 3-lik	0.623	0.094	0.637	4e-14
91081615	579	PREDICTED: similar to AMP dependent coa	0.645	0.103	0.583	7e-14
156555564	568	PREDICTED: probable 4-coumarate--CoA lig	0.645	0.105	0.590	3e-12
357605939	586	putative AMP dependent coa ligase [Danau	0.645	0.102	0.616	9e-12
332376418	377	unknown [Dendroctonus ponderosae]	0.645	0.159	0.55	1e-11
347967975	589	AGAP002503-PA [Anopheles gambiae str. PE	0.645	0.101	0.566	2e-11
321471668	538	hypothetical protein DAPPUDRAFT_316454 [	0.623	0.107	0.517	3e-10
321471684	595	hypothetical protein DAPPUDRAFT_316477 [	0.623	0.097	0.517	4e-10
321471685	594	hypothetical protein DAPPUDRAFT_316478 [	0.623	0.097	0.517	2e-09
321463518	488	hypothetical protein DAPPUDRAFT_307209 [	0.623	0.118	0.482	2e-09

>gi|328708451|ref|XP_001951162.2| PREDICTED: 4-coumarate--CoA ligase 3-like [Acyrthosiphon pisum]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 50/58 (86%)

Query: 30  AGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
             +VSPTELEN+I ++ GVADVAVVG+PD LSGE+P+AFVVK+PG+++ E+ I S+VE
Sbjct: 509 GNQVSPTELENLISELKGVADVAVVGIPDVLSGEIPRAFVVKRPGMDIDEKTILSHVE 566

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081615|ref|XP_966640.1| PREDICTED: similar to AMP dependent coa ligase [Tribolium castaneum]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 49/60 (81%)

Query: 30  AGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
             +VSPTELEN+++++ GVAD AVVG+PD L+GEVP+AFVV++PG  L+E +I  Y+ PK
Sbjct: 486 GNQVSPTELENLLLEMPGVADCAVVGIPDALAGEVPRAFVVRQPGSSLSEDDILLYINPK 545

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555564|ref|XP_001604694.1| PREDICTED: probable 4-coumarate--CoA ligase 3-like [Nasonia vitripennis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 30  AGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE-LTEQEISSYVEP 88
             +VSPTELE II++I GVAD AVVG+PDT +GE+PKAFVV+KPG E +T   +  +V P
Sbjct: 471 GNQVSPTELEYIILEIPGVADAAVVGIPDTFAGELPKAFVVRKPGFENVTPDHVQEFVNP 530

Query: 89  K 89
           +
Sbjct: 531 R 531

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605939|gb|EHJ64841.1| putative AMP dependent coa ligase [Danaus plexippus]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query: 30  AGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
             +VSPTE+E+IIM+I  +ADVAVVG+PD L+GEVP+AFVV KPG +LTE+ I   V  K
Sbjct: 490 GNQVSPTEIESIIMEIPEIADVAVVGIPDALAGEVPRAFVVLKPGSKLTEKNIYDVVAEK 549

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376418|gb|AEE63349.1| unknown [Dendroctonus ponderosae]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 30  AGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
             +VSPTELEN+I++I G+ D AVVGVPD L+GEVP+A+VV KPG  + E++I  ++  K
Sbjct: 283 GNQVSPTELENLILEIEGIIDAAVVGVPDELAGEVPRAYVVAKPGENINEEDIKKFISSK 342

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967975|ref|XP_312436.5| AGAP002503-PA [Anopheles gambiae str. PEST] gi|333468218|gb|EAA44923.5| AGAP002503-PA [Anopheles gambiae str. PEST]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 47/60 (78%)

Query: 30  AGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
             +VSPTELENII+++  V+DVAV GVPD  +GE+P+AFVV KPG +L E+E+  YV+ +
Sbjct: 491 GNQVSPTELENIILELPEVSDVAVAGVPDETAGELPRAFVVVKPGSQLDEREVQDYVKER 550

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471668|gb|EFX82640.1| hypothetical protein DAPPUDRAFT_316454 [Daphnia pulex]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 51/58 (87%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           +VSP+ELE++I + +GV+DVAV+GVPD ++GE+P+A+VVKK GV +++++I+ +V+ K
Sbjct: 443 QVSPSELEDVIRRHSGVSDVAVIGVPDEIAGELPRAYVVKKKGVAVSKEDIAEFVDVK 500

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471684|gb|EFX82656.1| hypothetical protein DAPPUDRAFT_316477 [Daphnia pulex]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 47/58 (81%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           +V+P+ELE+I+ +I G+ DVAV+GVPD ++GE+P+A+VVKK  + LTE+ I  +V+ K
Sbjct: 504 QVAPSELEDILRRIPGILDVAVIGVPDDIAGELPRAYVVKKESISLTEKNIIEFVDAK 561

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471685|gb|EFX82657.1| hypothetical protein DAPPUDRAFT_316478 [Daphnia pulex]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 48/58 (82%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           +VSP+ELE+++ +I GV DVAV+GVPD ++GE+P+A+VVKK G  L++++I  +V+ K
Sbjct: 503 QVSPSELEDVLRRIPGVLDVAVIGVPDDIAGELPRAYVVKKEGNPLSKEDIIEFVDAK 560

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321463518|gb|EFX74533.1| hypothetical protein DAPPUDRAFT_307209 [Daphnia pulex]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 48/58 (82%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           +VSP+ELE+++ +   V DVAV+G+PD +SGE+P+A+VVKK GV +++++I+ +V+ K
Sbjct: 392 QVSPSELEDVLRRHPAVLDVAVIGIPDDMSGELPRAYVVKKNGVSVSKEDIAEFVDAK 449

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
WB|WBGene00008669	544	acs-14 [Caenorhabditis elegans	0.612	0.104	0.396	2.5e-05
FB|FBgn0039156	544	CG6178 [Drosophila melanogaste	0.591	0.101	0.363	5.2e-05
TAIR|locus:2094771	570	4CL5 "4-coumarate:CoA ligase 5	0.591	0.096	0.345	0.00012
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.698	0.115	0.353	0.00019
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.591	0.101	0.363	0.00023
UNIPROTKB|Q81MU8	500	BAS3220 "AMP-binding protein"	0.741	0.138	0.285	0.00037
TIGR_CMR|BA_3473	500	BA_3473 "AMP-binding protein"	0.741	0.138	0.285	0.00037
UNIPROTKB|P08659	550	P08659 "Luciferin 4-monooxygen	0.698	0.118	0.353	0.00038
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.591	0.098	0.345	0.00039
UNIPROTKB|Q4K7V1	563	fadD_2 "Long-chain-fatty-acid-	0.580	0.095	0.351	0.0005

WB|WBGene00008669 acs-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query:    32 KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
             +V P ELE++++             PD  +GE+PKAFVV+     LTEQE+  +V+PK
Sbjct:   450 QVPPAELEDLLLSHPKIRDCAVIGIPDAKAGELPKAFVVRADNT-LTEQEVKDFVKPK 506

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

FB|FBgn0039156 CG6178 [Drosophila melanogaster (taxid:7227)]

 Score = 97 (39.2 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query:    32 KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
             +V P E+E +++             PD  +GE+P AFVVK+  V+LTE E+  +V
Sbjct:   446 QVPPAEIEALLLTNDKIKDAAVIGKPDEEAGELPLAFVVKQANVQLTENEVIQFV 500

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0045289 "luciferin monooxygenase activity" evidence=IDA

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query:    32 KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
             +V+P ELE +++              D ++ EVP AFV +  G +LTE ++ SYV
Sbjct:   474 QVAPAELEALLISHPSIDDAAVVAMKDEVADEVPVAFVARSQGSQLTEDDVKSYV 528

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009699 "phenylpropanoid biosynthetic process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00019, P = 0.00019
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query:    22 LETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQE 81
             L+ + +  A +V P ELE I+              PD  +GE+P AF+V+KPG  L E +
Sbjct:   454 LKELIKYKAYQVPPVELEQILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQ 513

Query:    82 ISSYV 86
             I  +V
Sbjct:   514 IIDFV 518

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00023, P = 0.00023
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query:    32 KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
             +V+P ELE +++             PD  +GEVP AFVV+ P   +TEQ+I  ++
Sbjct:   450 QVAPAELEGLLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQDIQKFI 504

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

UNIPROTKB|Q81MU8 BAS3220 "AMP-binding protein" [Bacillus anthracis (taxid:1392)]

 Score = 87 (35.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
 Identities = 20/70 (28%), Positives = 35/70 (50%)

Query:    20 KFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTE 79
             ++ + I R     V P ++E++I ++           PD   GE+P+A++VK     LTE
Sbjct:   397 RYKDVIIRG-GDNVYPDQVEDVIHEMHGVLEVAVVGVPDGFWGEIPRAYIVKDGETILTE 455

Query:    80 QEISSYVEPK 89
             + I  Y + K
Sbjct:   456 ESIIQYCKEK 465

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_3473 BA_3473 "AMP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 87 (35.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
 Identities = 20/70 (28%), Positives = 35/70 (50%)

Query:    20 KFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTE 79
             ++ + I R     V P ++E++I ++           PD   GE+P+A++VK     LTE
Sbjct:   397 RYKDVIIRG-GDNVYPDQVEDVIHEMHGVLEVAVVGVPDGFWGEIPRAYIVKDGETILTE 455

Query:    80 QEISSYVEPK 89
             + I  Y + K
Sbjct:   456 ESIIQYCKEK 465

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016208 "AMP binding" evidence=ISS

UNIPROTKB|P08659 P08659 "Luciferin 4-monooxygenase" [Photinus pyralis (taxid:7054)]

 Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query:    22 LETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQE 81
             L+++ +    +V+P ELE+I++Q            PD  +GE+P A VV + G  +TE+E
Sbjct:   438 LKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKE 497

Query:    82 ISSYV 86
             I  YV
Sbjct:   498 IVDYV 502

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query:    32 KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
             +V P ELE++++              D ++GEVP AFVV+  G ++TE+++  YV
Sbjct:   470 QVPPAELESLLINHHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITEEDVKEYV 524

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

UNIPROTKB|Q4K7V1 fadD_2 "Long-chain-fatty-acid--CoA ligase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 97 (39.2 bits), Expect = 0.00050, P = 0.00050
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query:    33 VSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
             V P ELE+++  +           PD  SGE  K F+V KPGV LT++++ +++
Sbjct:   466 VYPNELEDVLASLPGVLQCAAIGVPDEKSGETIKIFIVVKPGVTLTKEQVMAHM 519

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	93
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-20
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-18
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	5e-17
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-16
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	4e-15
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-14
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-14
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-14
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	7e-14
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-13
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-13
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-13
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	4e-13
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	8e-13
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	6e-12
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-11
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-11
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-11
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-11
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-11
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	4e-11
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-11
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-11
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	7e-11
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	7e-11
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-11
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-10
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-10
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-10
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-10
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-10
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-10
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-10
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	3e-10
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-10
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-10
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	4e-10
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	7e-10
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	9e-10
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	3e-09
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-09
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	5e-09
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	6e-09
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	9e-09
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-08
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-08
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	3e-08
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-08
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	6e-08
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	6e-08
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	7e-08
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	9e-08
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-07
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-07
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-07
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	4e-07
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	5e-07
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	5e-07
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	5e-07
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	5e-07
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	6e-07
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	6e-07
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-06
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-06
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-06
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	3e-06
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	4e-06
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	4e-06
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-06
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	5e-06
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	7e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	8e-06
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	9e-06
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-05
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-05
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-05
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	1e-05
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-05
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-05
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	3e-05
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-05
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	5e-05
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	7e-05
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	9e-05
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-04
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-04
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-04
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	3e-04
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-04
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-04
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.001
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.001
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	0.001
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	0.001
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.001
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	0.002
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	0.003
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	0.003
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	0.003
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	0.004

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 83.8 bits (208), Expect = 1e-20
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           V P ELE ++++   VAD AV+G+PD ++GE+P+A+VV KPG +LTEQE+  YV  K
Sbjct: 405 VPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKK 461

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 77.9 bits (193), Expect = 2e-18
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           + P ELE+ +     VA+VAV+GVPD   GE P A VV KPG  L  +E+ +++  +
Sbjct: 428 IYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGR 484

Length = 521

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 73.7 bits (182), Expect = 5e-17
 Identities = 25/57 (43%), Positives = 34/57 (59%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           V P E+E ++     V + AVVGVPD   GE  KAFVV K G  LTE+E+ ++   +
Sbjct: 382 VYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCRER 438

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 71.3 bits (176), Expect = 3e-16
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           + P E+EN+++    VADVAV+GVPD   GE   A VV +PG  L  +E+ ++   +
Sbjct: 256 IYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGATLDAEELIAFCRER 312

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 68.3 bits (167), Expect = 4e-15
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG--VELTEQEISSYVE 87
            + P E+E ++ +   VA+ AVVGVPD   GE   A VV KPG   ELT +E+ +++ 
Sbjct: 433 NIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLR 490

Length = 534

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 25/54 (46%), Positives = 38/54 (70%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           V+P ELE +++    +AD AV+  PD  +GE+P AFVV++PG EL+E E+  +V
Sbjct: 419 VAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSEDEVMQFV 472

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 65.9 bits (161), Expect = 4e-14
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
           VS  ELENII     + D+ VVG+ D++  E  KAFVV   G  L+E+E  ++ E
Sbjct: 431 VSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCE 485

Length = 517

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 65.7 bits (161), Expect = 4e-14
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           +S  E+E ++ +   V + AVV  PD   GE P AFVV KPG  +TE+E+  Y
Sbjct: 434 ISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEELIEY 486

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 64.9 bits (159), Expect = 7e-14
 Identities = 27/57 (47%), Positives = 36/57 (63%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           +S  ELEN +M    VA+ AVVGVP    GE P A VV KPG ++TE+E+  ++  K
Sbjct: 430 ISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKK 486

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 63.8 bits (156), Expect = 1e-13
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
            V P E+E++++Q   VA+ AVVGVPD   GE   AFVV +PG +   +E+ +++
Sbjct: 256 NVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHL 310

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
            + P E+E  ++    VA+ AVVGVPD   GEV  AFVV KPG  LTE+E+ ++ 
Sbjct: 260 NIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEEELIAFC 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 24/54 (44%), Positives = 33/54 (61%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           +VSPTE+E +I     VA+ AV+GVPD L G+   A VV   G  L E+E+  +
Sbjct: 263 RVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKH 316

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.6 bits (153), Expect = 4e-13
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           V P E+E ++ +   VA+ AV+GVPD   GEV KA+VV KPG ELTE+E+ +Y
Sbjct: 425 VYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAY 477

Length = 513

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 61.9 bits (151), Expect = 8e-13
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 28  NPAGK-VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE--QEISS 84
             +GK + P E+E++++    VA+ AVVGVPD   G++  AFVV   GVE  E  +EI  
Sbjct: 423 KVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRR 482

Query: 85  YVE 87
           +V 
Sbjct: 483 HVA 485

Length = 528

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 26/54 (48%), Positives = 37/54 (68%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           V+P ELE +++    +AD AVV + D ++GEVP AFVV+  G E+TE EI  +V
Sbjct: 445 VAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFV 498

Length = 537

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
           +S  E+E  I+    VA+ AVV VP  L  +  KA VV +PG  L  + +  +   + P
Sbjct: 335 ISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGETLDPEALLEFCRDRLP 393

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 28  NPAGK-VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT---EQEIS 83
             AGK V P E+E+++     VA+ A +GVPD + GE    FVV KPGV  +   E E++
Sbjct: 362 KVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELA 421

Query: 84  SYVE 87
            +V 
Sbjct: 422 DHVG 425

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           K+SP E+E ++++   VA+  V GVPD L GE   A VV +   ++T +E+  + 
Sbjct: 257 KISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFA 311

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
           + P E+E +I +++ V +VAVVG      GE+P AF+VKK    L E+++  +  
Sbjct: 404 IYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCR 458

Length = 496

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.3 bits (139), Expect = 3e-11
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK-PGVELTEQEISSY 85
           V P E+E ++    GV +VA VGVPD  SGE  K FVVKK P   LTE+++ ++
Sbjct: 468 VYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDP--ALTEEDVKAF 519

Length = 557

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 57.2 bits (138), Expect = 4e-11
 Identities = 20/56 (35%), Positives = 36/56 (64%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
           +++P +LE +++    + D AV  VPD   GE+P AFVV++ G  L+++ + +YV 
Sbjct: 462 QIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVA 517

Length = 560

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 56.8 bits (138), Expect = 4e-11
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           K+SP E+EN+++    VAD AVVG+PD + GE   AFVV + G   T  E+ ++
Sbjct: 396 KISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAF 449

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 56.5 bits (137), Expect = 6e-11
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 35  PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           P E+E +++   GVA+  VVGVPD   G+VP AFVVK    E+TE+E+  + E K
Sbjct: 395 PAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVK--SGEVTEEELRHFCEEK 447

Length = 483

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 56.4 bits (137), Expect = 7e-11
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           + P E+E  +     + DV VVGVPD   GE   A+++ +PG  LTE+++  +
Sbjct: 460 IYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDF 512

Length = 559

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 56.1 bits (136), Expect = 7e-11
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
           V P E+E+++ +   VA VAV+GVPD   GE   A VV +PG  +   E+ ++V+ +K
Sbjct: 426 VFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERK 483

Length = 524

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 56.0 bits (136), Expect = 7e-11
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
            + P E+E +++Q   V + AVVGVPD   G+ P AFVV      ++ +E+ +++  K
Sbjct: 320 NIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDD-PVSVEELQAFLADK 376

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE--LTEQEISSYV 86
           KV P E+E ++ Q   V +V V+G PD   GEV KAFVV KP     +TE++I  + 
Sbjct: 342 KVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
           KVS  E+E  +++  GVA+VAV+GVPD   GE   A VV + G  LT  E+
Sbjct: 347 KVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAEL 397

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 3/61 (4%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ---EISSYVEP 88
           ++ P ++E+ +++   VA+ AVVGVPD L GE+ KAFVV K G   +++   E+  +V+ 
Sbjct: 349 RIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKK 408

Query: 89  K 89
           +
Sbjct: 409 R 409

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           V P E+E+++     V + AV+GV D   G+  +AFVVK PG  L E  I  YV
Sbjct: 460 VFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYV 513

Length = 549

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 28  NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEIS 83
           N AG ++S  E+E  +++   VA+ AVVGV D L G+VP   VV K   ++   ++ 
Sbjct: 488 NVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDCKIDADQLE 544

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
           ++ P E+E+ +++   VA+ AVVG PD + GEV KAFVV  PG + +E+
Sbjct: 339 RIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEE 387

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.4 bits (131), Expect = 3e-10
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
           V P ELE+++  + GV   A +GVPD  SGE  K FVV KPG  LT++++
Sbjct: 466 VYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQV 515

Length = 562

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE---QEISSYV 86
           ++ P E+E  +++   V + AVVGVPD   GE+ KAFVV   GVE ++    E+   V
Sbjct: 348 RIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEGVEPSDELATELQELV 405

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
           V P E+E+ +M+   VA+  V+G PD ++GE+ KAFV  +PG E +E+
Sbjct: 353 VGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEE 400

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---ELTEQEISSYVEPK 89
           VSP E+E+ ++Q   V + AVVG  D      PKAFVV K G       E E+  +V+ K
Sbjct: 417 VSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDK 476

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           V P E+E  ++    V++VAV+GVPD + GEV  A  V + G  + E E+ ++++ K
Sbjct: 427 VYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGK 483

Length = 528

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 53.5 bits (129), Expect = 7e-10
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE 76
           ++SP E+E+ +++   VA+ AVV  PD +   VPKA++V KPG E
Sbjct: 340 RISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYE 384

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78
            +S  E+E+++++   VA+VAVV +PD   GE   A VV  PG  LT
Sbjct: 348 NISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGASLT 394

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ---EISSYV 86
           V P E+E+ +M+   VA+  V+G PD + GE+ KAFV  +PG E +E+   EI  +V
Sbjct: 465 VGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFV 521

Length = 570

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
           V P E+E+++M    V +VA VGVP  +SGE  K FVVKK    LTE+E+
Sbjct: 465 VYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDP-SLTEEEL 513

Length = 560

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---ELTEQEISSYV 86
           VSP E+E  + +   VA+ AVV VPD       KAFVV +PG    +L E+++  ++
Sbjct: 347 VSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFL 403

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 50.6 bits (122), Expect = 6e-09
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
           V P E+E  I ++ GV + AV+GVP    GE   A VV KPG  L E  I
Sbjct: 410 VYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAI 459

Length = 504

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 50.4 bits (121), Expect = 9e-09
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           V P+E+E ++ Q   V   AVVG PD   G+VP AFV  KPG +LT   + ++
Sbjct: 475 VFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAW 527

Length = 567

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 35  PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           P  +E  +++   VA  A VG PD  +GE+P A+V  KPG  +TE E+ ++V
Sbjct: 269 PQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFV 320

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK 72
           V P E+E++I  + GV +VA VGVPD  SGE+ K  +VKK
Sbjct: 470 VYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK 509

Length = 560

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 37  ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE---QEISSYVE 87
           E+E+ ++    VA+ AVVG PD + GE   AFV  K GVE ++   +E+  +V 
Sbjct: 500 EVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTLKDGVEPSDELRKELKKHVR 553

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 35  PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           P E+E  +     VADV V GVPD   GE   A+V   PG   +E+E+  +
Sbjct: 463 PREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREF 513

Length = 558

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV-KKPGVELTE------QEISSY 85
           V P E+E+++M    VA+ A +GVPD  SGE  K FVV + PG+ + E      +  + Y
Sbjct: 474 VYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKAYCKENFTGY 533

Query: 86  VEPKKPVL 93
             PK  VL
Sbjct: 534 KVPKHIVL 541

Length = 562

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 47.8 bits (114), Expect = 6e-08
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           V P E+E  +     VA+ AV+GV D   G+   AFVV KPG   T + +  +V
Sbjct: 449 VYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHV 502

Length = 537

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 35  PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           P  +E  +++   VA  A VG PD  +GE+P A+V  KPG   TE E+ ++ 
Sbjct: 480 PAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFA 531

Length = 632

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
           V+  E+E  +     VA+VAV+G+PD    E   A VV K G  +TE E+
Sbjct: 428 VASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDEL 477

Length = 523

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 22/45 (48%), Positives = 27/45 (60%)

Query: 37  ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQE 81
           E+E  I     VA+VAVVGV D L G+V  AFVV K    L ++E
Sbjct: 510 EIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADRE 554

Length = 629

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 35  PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
           P E+E ++  + GV D AV G+PD   GE   A V  +PG  L E +I + ++
Sbjct: 414 PAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLK 466

Length = 509

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
           ++ +E+E +I ++  VA+ AV+GV D   GE   A VV  PG  LT + +  +  
Sbjct: 406 IASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCR 460

Length = 497

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           +V+P ELE I++    V D AVV +PD  +GE+P A VV  P  + +E++I ++V
Sbjct: 449 QVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFV 503

Length = 546

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 28  NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE--LTEQEI 82
           N +G KV P E+EN++ +   + +  V+  PD   GE  KA VV +P      TE+EI
Sbjct: 443 NASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEI 500

Length = 546

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE-------QEISS 84
            V P E+E  I+    V DV V+G+PD   GEV  A  V K      E        ++S 
Sbjct: 356 NVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQLSP 415

Query: 85  YVEPKK 90
           + +PK 
Sbjct: 416 FKQPKH 421

Length = 452

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)

Query: 28  NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ------ 80
           N +G ++   E+E+ ++    VA+ AVVG+PD + G+   AFV  K G E  ++      
Sbjct: 502 NVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELR 561

Query: 81  -----EISSYVEPKK 90
                EI    +P K
Sbjct: 562 KHVRKEIGPIAKPDK 576

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           +S  ++EN+ +    VA+ A +        E P   VVK+PG E+T +E+ ++ E K
Sbjct: 442 ISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGK 498

Length = 539

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
           +S  E+E+++ +   V   AVV  PD   GEVP AFV  K G   TE+EI
Sbjct: 449 ISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEI 498

Length = 545

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 45.1 bits (107), Expect = 6e-07
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV----KKPGVELTEQEISSYV 86
           ++ P E+E+ ++Q   V + AV GVPD + G+V KA +V     +P  EL ++E+  +V
Sbjct: 444 RIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEEL-KKELQDHV 501

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 35  PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE---QEISSYVEPK 89
           P E+EN+++    VADVAV GVPD   GE  KA V    G +  +    E+ +++  +
Sbjct: 404 PQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGR 461

Length = 502

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73
           ++ P E+E+ +++   V + AVV  PD + GEV KAFVV  P
Sbjct: 434 RIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAP 475

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV-KKPGVELTEQEISSYVEPKK 90
           +S  E+E+I++Q   + D  VV +PD   GE   A+VV K P   LT +E+ ++   K+
Sbjct: 443 ISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKR 501

Length = 547

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 37  ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
           E+E ++ +   +A VA+V  PD   GE   AFVV +PG  L  +E+  +++ +K
Sbjct: 456 EIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQK 509

Length = 547

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query: 35  PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE 79
           P E EN+++    VAD AV GVP+   GE  KA V    GV+   
Sbjct: 417 PQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGP 461

Length = 511

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 42.8 bits (102), Expect = 4e-06
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 48  VADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
           VA+ AVVG PD + G+   AFV  K G E +++
Sbjct: 531 VAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDE 563

Length = 637

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG---VELTEQEISSYVEPK 89
           VSP E+E+ ++Q   V + AVVGV D      PKAF+V +PG       E E+  +V+ +
Sbjct: 417 VSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDR 476

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 42.5 bits (100), Expect = 5e-06
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
           V P E+E ++    G+ + AVVG+ D   GEV    +V   G  L  + I S++ 
Sbjct: 394 VYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLS 448

Length = 488

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           +S  +LEN+ +    VA+ AV+GV      E P   V  KPG   T +EI  Y++ K
Sbjct: 443 ISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGK 499

Length = 542

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           V P E+E ++ +   V +V  +GVPD   GE  KAFVV K G E +E+E++ +
Sbjct: 464 VYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQF 516

Length = 563

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 20/45 (44%), Positives = 25/45 (55%)

Query: 36  TELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
            +LEN IM    V + AV+G PD   GE P A  V  PG+E T +
Sbjct: 466 AQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRE 510

Length = 576

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 41.8 bits (98), Expect = 9e-06
 Identities = 16/53 (30%), Positives = 31/53 (58%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           + P+E+E ++ +  GV +V V+G+PD   G+   A VV + G  L+   + ++
Sbjct: 409 IHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSADALDTF 461

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFV 69
           V P E+E ++ Q  GVA V VVGVPD+   E+  A V
Sbjct: 447 VYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACV 483

Length = 563

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           V P E+E ++ +  GV D AVVG+P     E   A VV +PG  L  + + +Y
Sbjct: 478 VYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAY 530

Length = 573

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV 70
           + P E+E ++ Q  G+ +  VV  PD   G+VP A++V
Sbjct: 353 IYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV 390

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 28  NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           N AG ++   E+E  +     VA+VAVVGV D L G+V   F + K      +      V
Sbjct: 499 NVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAV 558

Query: 87  E 87
           E
Sbjct: 559 E 559

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 17/46 (36%), Positives = 22/46 (47%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL 77
           +VSPTE+E +      VA+    GVPD   G+     V    G EL
Sbjct: 428 RVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEEL 473

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 14/25 (56%), Positives = 21/25 (84%)

Query: 9   VAPYKKLAGGVKFLETIPRNPAGKV 33
           VA YK+L GGV F++ IP++P+GK+
Sbjct: 462 VAKYKQLRGGVVFVDEIPKSPSGKI 486

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 37  ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
           E+EN++ Q   VA VA+V  PD   GE   A VV KPG  L    + ++++ +K
Sbjct: 454 EIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQK 507

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---ELTEQEISSYV 86
           ++  E+E+ ++    VA+ AV+GVPD   G++  A +V + G    EL  + +  +V
Sbjct: 398 IAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFV 454

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 28  NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           N  G KV P E+E  +     VAD  VVGVPD   G+   A V  + G      E+ ++ 
Sbjct: 435 NTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHC 494

Length = 533

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
           +S  E+E +++    VA  AV  VP  L  +   A VV + G  L    +  + EP+  
Sbjct: 433 ISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLA 491

Length = 542

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
           V P  +EN +     VAD AV+GVPD   G    AFVV  PG  +   ++  Y++
Sbjct: 429 VYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLK 483

Length = 516

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 28  NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73
           N  G K++  E+EN++++   V D A+V +PD L GE   AF+V K 
Sbjct: 441 NRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE 487

Length = 542

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 6   ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVP 65
           +LS A    + G +K  E I R    K+SP  +E ++     V + AV GVPD L GE  
Sbjct: 417 SLSAAGDLSIRGRIK--ELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAV 473

Query: 66  KAFVVKKPGVELTEQEISSY 85
            A +V +     T +E+  +
Sbjct: 474 AAVIVPRESAPPTAEELVQF 493

Length = 534

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74
           V P  +E  I +  GV +V V+G+PD   GE  KAFV  +PG
Sbjct: 454 VYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPG 495

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           +S  E+EN++ +   V + AVV +P    GE P AFVV + G    E  +   V
Sbjct: 453 ISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLV 506

Length = 579

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           ++   E+E  ++   GV + AVVGVPD   G+   A+VV     ++   E+  +V
Sbjct: 383 RIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVV--GADDVAADELIDFV 435

Length = 471

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
           +S  E+EN++     V + +VV  PD   GE P AFV  KPGV+ +++
Sbjct: 463 ISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDE 510

Length = 567

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 28  NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           N  G KV P E+E  +     VAD  VVGVPD   G+   A V  + G  L   E+  + 
Sbjct: 273 NTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHC 332

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGE-VPKAFVVKKPGVELTEQEI 82
           V+P E+E+ +  + GVA   VVG   T  G+ VP AFV+   G    E  +
Sbjct: 439 VNPAEIEHALEALPGVAAAQVVGA--TRDGKTVPVAFVIPTDGASPDEAGL 487

Length = 540

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 11/63 (17%)

Query: 37  ELENIIMQIAGVADVAVVGVPDTLSGEVPK--AFVVKKPGVELTE-------QEISSYVE 87
           E+E  +  + GV +  V+ VP     +V +  AFVV K G   T+       + +  Y+ 
Sbjct: 367 EIEAALRALPGVEEAVVLPVPK--GEKVVRLVAFVVGKEGALDTKALKKELKKRLPPYMI 424

Query: 88  PKK 90
           P++
Sbjct: 425 PRR 427

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
           + P E EN +     V DVAV+GVPD   GE  KA +    G+  +++
Sbjct: 412 IYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDE 459

Length = 501

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 38  LENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL 77
           +E I+++     +VAV  VPD + G+   A +V  PG + 
Sbjct: 419 IERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKF 458

Length = 529

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFV----VKKPGVELTEQEISSYVEP 88
           + P E+E+++ +   V ++ V+GVPD+  GE P A +     K+       Q +SS+  P
Sbjct: 394 IFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQRLSSFKIP 453

Query: 89  KK 90
           K+
Sbjct: 454 KE 455

Length = 487

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPD-TLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
           VS TE+E ++ +  GV +  V GV      G    A +   PG     Q  +++++ + P
Sbjct: 351 VSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLP 410

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 12  YKKLAGGVKFLE----TIPRNPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPK 66
           YK   G + F+      I  N +G  V P E+E++++++ GV +  V    D ++GE  K
Sbjct: 300 YKSERGTLHFMGRMDDVI--NVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVK 357

Query: 67  AFVVKKPGVELTE 79
           A V+    ++  +
Sbjct: 358 AKVISHEEIDPVQ 370

Length = 414

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%)

Query: 9   VAPYKKLAGGVKFLETIPRNPAGKV 33
           VAPYKK+   V F++ IP++P+GK+
Sbjct: 476 VAPYKKVRK-VVFVDAIPKSPSGKI 499

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE-------LTEQEISS 84
           K++  E+EN++++   V   A+V + D L GE   AF+V K  ++       L EQ I+ 
Sbjct: 441 KIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQGIAE 500

Query: 85  YVEP 88
           +  P
Sbjct: 501 FKLP 504

Length = 536

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73
           K++  E+EN+++    V D A+V +PD L GE   AF+V + 
Sbjct: 439 KIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRD 480

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 6   ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIM 43
           A  VAPYKK+   V F+++IP++PAGK+   EL+  + 
Sbjct: 517 AKQVAPYKKVRK-VVFVQSIPKSPAGKILRRELKRSLT 553

Length = 560

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG1176|consensus	537		99.93
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.86
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.85
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.84
KOG1175|consensus	626		99.84
PLN03051	499	acyl-activating enzyme; Provisional	99.83
PLN02654	666	acetate-CoA ligase	99.83
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.82
KOG1177|consensus	596		99.82
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.81
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.81
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.8
PRK00174	637	acetyl-CoA synthetase; Provisional	99.8
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.8
PRK07788	549	acyl-CoA synthetase; Validated	99.8
PRK07529	632	AMP-binding domain protein; Validated	99.8
PRK07868	994	acyl-CoA synthetase; Validated	99.79
PLN02574	560	4-coumarate--CoA ligase-like	99.77
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.77
PRK07867	529	acyl-CoA synthetase; Validated	99.77
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.77
PRK13382	537	acyl-CoA synthetase; Provisional	99.76
PLN03102	579	acyl-activating enzyme; Provisional	99.76
PLN02860	563	o-succinylbenzoate-CoA ligase	99.76
PLN03052	728	acetate--CoA ligase; Provisional	99.75
PRK09274	552	peptide synthase; Provisional	99.75
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.75
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.75
PRK06839	496	acyl-CoA synthetase; Validated	99.75
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.75
PRK09188	365	serine/threonine protein kinase; Provisional	99.75
PRK05852	534	acyl-CoA synthetase; Validated	99.75
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.74
PRK13388	540	acyl-CoA synthetase; Provisional	99.74
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.74
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.74
PLN02246	537	4-coumarate--CoA ligase	99.73
PRK13390	501	acyl-CoA synthetase; Provisional	99.73
PRK08308	414	acyl-CoA synthetase; Validated	99.73
PRK06060	705	acyl-CoA synthetase; Validated	99.73
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.73
PRK13383	516	acyl-CoA synthetase; Provisional	99.73
PRK09088	488	acyl-CoA synthetase; Validated	99.72
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.72
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.72
PRK04319	570	acetyl-CoA synthetase; Provisional	99.72
PRK07798	533	acyl-CoA synthetase; Validated	99.72
PRK08162	545	acyl-CoA synthetase; Validated	99.72
PRK06145	497	acyl-CoA synthetase; Validated	99.72
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.72
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.72
PLN02330	546	4-coumarate--CoA ligase-like 1	99.71
PRK07470	528	acyl-CoA synthetase; Validated	99.71
PRK06178	567	acyl-CoA synthetase; Validated	99.71
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.71
PRK12583	558	acyl-CoA synthetase; Provisional	99.7
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.7
PRK06164	540	acyl-CoA synthetase; Validated	99.7
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.7
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.69
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.69
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.69
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.69
PRK08316	523	acyl-CoA synthetase; Validated	99.69
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.68
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.68
PRK07638	487	acyl-CoA synthetase; Validated	99.68
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.68
PRK08315	559	AMP-binding domain protein; Validated	99.68
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.67
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.67
PLN02479	567	acetate-CoA ligase	99.67
PRK07787	471	acyl-CoA synthetase; Validated	99.67
PRK07514	504	malonyl-CoA synthase; Validated	99.67
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.67
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.67
PLN02736	651	long-chain acyl-CoA synthetase	99.66
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.66
PRK06188	524	acyl-CoA synthetase; Validated	99.66
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.66
PRK05857	540	acyl-CoA synthetase; Validated	99.65
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.65
PRK13391	511	acyl-CoA synthetase; Provisional	99.65
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.64
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.64
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.64
PRK12316	5163	peptide synthase; Provisional	99.63
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.63
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.63
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.63
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.62
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.62
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.61
PLN02614	666	long-chain acyl-CoA synthetase	99.61
PRK12467	3956	peptide synthase; Provisional	99.61
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.61
PRK12316	5163	peptide synthase; Provisional	99.61
PRK09192	579	acyl-CoA synthetase; Validated	99.61
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.61
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.61
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.59
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.58
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.57
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.56
PRK05850	578	acyl-CoA synthetase; Validated	99.55
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.54
PRK05691	4334	peptide synthase; Validated	99.53
PRK12467	3956	peptide synthase; Provisional	99.53
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.52
PTZ00342	746	acyl-CoA synthetase; Provisional	99.52
PRK05691	4334	peptide synthase; Validated	99.51
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.43
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.4
PTZ00216	700	acyl-CoA synthetase; Provisional	99.38
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.31
KOG1179|consensus	649		99.27
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.26
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.19
PRK12582	624	acyl-CoA synthetase; Provisional	99.16
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.13
PTZ00297	1452	pantothenate kinase; Provisional	98.87
KOG1256|consensus	691		98.85
KOG1178|consensus	1032		98.7
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	98.48
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.47
KOG1180|consensus	678		98.42
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	98.22
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	97.32
KOG3628|consensus	1363		95.01
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	92.82
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	90.81
PF01037	74	AsnC_trans_reg: AsnC family; InterPro: IPR019887 T	81.92

>KOG1176|consensus

Probab=99.93  E-value=8.5e-26  Score=158.83  Aligned_cols=89  Identities=34%  Similarity=0.532  Sum_probs=85.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .||.||+|+|||+||.+|.   ||+||++|++|+|.|||++|.+||.|.||||+|.+++.+|+.++|+|+++++...+++
T Consensus       412 TGDiGy~D~DG~l~IvdR~---KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~  488 (537)
T KOG1176|consen  412 TGDLGYFDEDGYLYIVDRS---KDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEK  488 (537)
T ss_pred             cCceEEEcCCCeEEEecch---hhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHH
Confidence            4899999999999999776   9999999999999999999999999999999999999999999999999998899999


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      ++.++|+++|++
T Consensus       489 di~~~v~k~l~~  500 (537)
T KOG1176|consen  489 DIIEYVRKKLPA  500 (537)
T ss_pred             HHHHHHHhhCCh
Confidence            999999999985

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.86  E-value=3.7e-21  Score=135.24  Aligned_cols=88  Identities=30%  Similarity=0.416  Sum_probs=77.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      ++|.++.|+|||++|.||.   ||+||+.|+++.|.|||++|.+||.|.||+|+|.+++..++.+++||+++++...+  
T Consensus       400 tGD~~~~DedGy~~i~GR~---DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L  476 (528)
T COG0365         400 TGDWAERDEDGYFWLHGRS---DDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNEL  476 (528)
T ss_pred             cCceeEEccCCCEEEEeec---cceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHH
Confidence            5899999999999999888   99999999999999999999999999999999999999999999999999886444  


Q ss_pred             HHHHHHHHcCcCC
Q psy12100         79 EQEISSYVEPKKP   91 (93)
Q Consensus        79 ~~~l~~~~~~~L~   91 (93)
                      .++|++++++.+.
T Consensus       477 ~~ei~~~vr~~~~  489 (528)
T COG0365         477 AEEIRRHVARNIG  489 (528)
T ss_pred             HHHHHHHHHhccC
Confidence            3566666655443

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.85  E-value=5.1e-21  Score=134.68  Aligned_cols=89  Identities=29%  Similarity=0.461  Sum_probs=82.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC--CCcC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG--VELT   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~   78 (93)
                      +||.+++|++|+++|+||.   ||+|+++|+||+|.|||+++.+||.|.+++|++++++.+++.++++++++++  ...+
T Consensus       405 TGDlg~~d~~G~l~i~gR~---kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~  481 (534)
T COG0318         405 TGDLGYVDEDGYLYIVGRL---KDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELT  481 (534)
T ss_pred             ecceEEEcCCccEEEEecc---ceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCC
Confidence            5899999999999999887   9999999999999999999999999999999999999999999999999876  3447


Q ss_pred             HHHHHHHHcCcCCC
Q psy12100         79 EQEISSYVEPKKPV   92 (93)
Q Consensus        79 ~~~l~~~~~~~L~~   92 (93)
                      .+++.++|+.+|+.
T Consensus       482 ~~~i~~~~~~~l~~  495 (534)
T COG0318         482 AEELRAFLRKRLAL  495 (534)
T ss_pred             HHHHHHHHHhhhhc
Confidence            89999999987765

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.84  E-value=2.1e-20  Score=134.06  Aligned_cols=90  Identities=14%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCH-
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE-   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-   79 (93)
                      .||.+++|+||++++.||.   ||+||++|+||+|.|||++|.+||+|.+++|++++++.+++.++++|+++++...+. 
T Consensus       503 tGDlg~~d~dG~l~i~GR~---dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~  579 (652)
T TIGR01217       503 HGDWITLTPRGGIVIHGRS---DSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDA  579 (652)
T ss_pred             cCCcEEECCCCcEEEEecc---cCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHH
Confidence            3899999999999999887   999999999999999999999999999999999999988999999999987755443 


Q ss_pred             --HHHHHHHcCcCCCC
Q psy12100         80 --QEISSYVEPKKPVL   93 (93)
Q Consensus        80 --~~l~~~~~~~L~~~   93 (93)
                        ++|+++++++|+++
T Consensus       580 ~~~~l~~~~~~~l~~~  595 (652)
T TIGR01217       580 LLDRIKRTIRAGLSPR  595 (652)
T ss_pred             HHHHHHHHHHhhCCCC
Confidence              58999999888763

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>KOG1175|consensus

Probab=99.84  E-value=1.3e-20  Score=133.86  Aligned_cols=90  Identities=27%  Similarity=0.362  Sum_probs=80.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      .||.++.|++||++++||+   ||+||++|+++++.|||+++.+||.|.|++|+|.+++..++.+.+|++++++....  
T Consensus       479 tGD~~~rd~dGY~~i~GR~---DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~  555 (626)
T KOG1175|consen  479 TGDGGRRDEDGYYWILGRV---DDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQ  555 (626)
T ss_pred             ecCceEEcCCceEEEEecc---cccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHH
Confidence            3899999999999999888   99999999999999999999999999999999999999999999999999885432  


Q ss_pred             -HHHHHHHHcCcCCCC
Q psy12100         79 -EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 -~~~l~~~~~~~L~~~   93 (93)
                       .++|+.++++.+.++
T Consensus       556 L~kel~~~VR~~igp~  571 (626)
T KOG1175|consen  556 LTKELVKHVRSVIGPY  571 (626)
T ss_pred             HHHHHHHHHHhhcCcc
Confidence             257778888777654

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.83  E-value=2.8e-20  Score=129.56  Aligned_cols=85  Identities=21%  Similarity=0.262  Sum_probs=73.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhc-CCCcceEEEEeeeCCCCC-ceEEEEE---EECCCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ-IAGVADVAVVGVPDTLSG-EVPKAFV---VKKPGV   75 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~   75 (93)
                      +||.+++|+||+++|.||.   ||+||++|+||+|.|||++|.+ ||+|.+|+|++++++..+ +.++++|   +++++.
T Consensus       361 TGDlg~~d~dG~l~~~gR~---~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~  437 (499)
T PLN03051        361 HGDIMKRTPGGYFCVQGRA---DDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGF  437 (499)
T ss_pred             cCCeEEECCCCcEEEEecc---CCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccc
Confidence            4899999999999999887   9999999999999999999986 999999999999998887 6788888   776654


Q ss_pred             -CcCHHHHHHHHcC
Q psy12100         76 -ELTEQEISSYVEP   88 (93)
Q Consensus        76 -~~~~~~l~~~~~~   88 (93)
                       ..+.++++++|++
T Consensus       438 ~~~~~~~l~~~~~~  451 (499)
T PLN03051        438 DQARPEALQKKFQE  451 (499)
T ss_pred             cccchHHHHHHHHH
Confidence             3556677766643

>PLN02654 acetate-CoA ligase

Probab=99.83  E-value=7.4e-20  Score=131.53  Aligned_cols=90  Identities=21%  Similarity=0.289  Sum_probs=80.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCH-
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE-   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-   79 (93)
                      +||.+++|+||+++|.||.   ||+||++|+||+|.|||++|.+||+|.+++|++++++..++.++++|+++++...+. 
T Consensus       517 TGD~~~~d~dG~l~i~GR~---dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~  593 (666)
T PLN02654        517 SGDGCSRDKDGYYWLTGRV---DDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEE  593 (666)
T ss_pred             eCceEEECCCCcEEEeeec---cCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHH
Confidence            4899999999999999888   999999999999999999999999999999999999988999999999987754433 


Q ss_pred             --HHHHHHHcCcCCCC
Q psy12100         80 --QEISSYVEPKKPVL   93 (93)
Q Consensus        80 --~~l~~~~~~~L~~~   93 (93)
                        ++|+++++++|+++
T Consensus       594 l~~~l~~~~~~~L~~~  609 (666)
T PLN02654        594 LRKSLILTVRNQIGAF  609 (666)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence              47888888888753

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.82  E-value=1.5e-19  Score=129.43  Aligned_cols=90  Identities=14%  Similarity=0.112  Sum_probs=80.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCH-
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE-   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-   79 (93)
                      .||.+++|+||+++|.||.   ||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++|+++++...+. 
T Consensus       502 TGDl~~~d~dG~l~i~GR~---dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~  578 (655)
T PRK03584        502 HGDWIEITEHGGVVIYGRS---DATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDA  578 (655)
T ss_pred             cCCeEEECCCCeEEEEeec---cCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHH
Confidence            4899999999999999887   999999999999999999999999999999999999888899999999987654443 


Q ss_pred             --HHHHHHHcCcCCCC
Q psy12100         80 --QEISSYVEPKKPVL   93 (93)
Q Consensus        80 --~~l~~~~~~~L~~~   93 (93)
                        ++++++++++|+++
T Consensus       579 ~~~~l~~~~~~~L~~~  594 (655)
T PRK03584        579 LRARIRTTIRTNLSPR  594 (655)
T ss_pred             HHHHHHHHHHhhCCCC
Confidence              68899999888764

>KOG1177|consensus

Probab=99.82  E-value=9.4e-20  Score=125.67  Aligned_cols=90  Identities=24%  Similarity=0.281  Sum_probs=83.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC--cC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE--LT   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--~~   78 (93)
                      .||.+++|++|+++|.||.   ||||+.+|+||||.|||+.|.+||.|.++.|+|++++..|+.++|++.++.+..  .+
T Consensus       465 TGDi~~m~enG~i~iVGRs---kdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t  541 (596)
T KOG1177|consen  465 TGDIAVMDENGTIEIVGRS---KDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTT  541 (596)
T ss_pred             cCceEEEcCCCcEEEEEcc---cCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccccccc
Confidence            4899999999999999877   999999999999999999999999999999999999999999999999987764  47


Q ss_pred             HHHHHHHHcCcCCCC
Q psy12100         79 EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 ~~~l~~~~~~~L~~~   93 (93)
                      .+.|+.+|+.+|..|
T Consensus       542 ~E~lKa~Ck~klaHF  556 (596)
T KOG1177|consen  542 AETLKAMCKGKLAHF  556 (596)
T ss_pred             HHHHHHHHhcccccc
Confidence            899999999998764

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.81  E-value=1.4e-19  Score=129.04  Aligned_cols=90  Identities=22%  Similarity=0.272  Sum_probs=79.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL---   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---   77 (93)
                      .||.+++|++|++++.||.   ||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++++++++...   
T Consensus       476 TGD~g~~d~dG~l~i~GR~---dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~  552 (628)
T TIGR02316       476 SFDWGIRDEDGYTFILGRT---DDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDA  552 (628)
T ss_pred             CCceEEEcCCCcEEEEEcC---cceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccc
Confidence            4799999999999999887   9999999999999999999999999999999999999889999999998765321   


Q ss_pred             -----CHHHHHHHHcCcCCCC
Q psy12100         78 -----TEQEISSYVEPKKPVL   93 (93)
Q Consensus        78 -----~~~~l~~~~~~~L~~~   93 (93)
                           ..++|+++++++|+++
T Consensus       553 ~~~~~~~~~i~~~~~~~L~~~  573 (628)
T TIGR02316       553 HDPHAVETGMMDCVVRQLGAV  573 (628)
T ss_pred             cchHHHHHHHHHHHHHhcCCC
Confidence                 2468999999988764

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.81  E-value=2.8e-19  Score=123.69  Aligned_cols=89  Identities=25%  Similarity=0.332  Sum_probs=80.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.+++|+||++++.||.   ||+||++|+||+|.+||+.|.+||+|.+|+|++.+++..++.++++++..++ ..+.+
T Consensus       328 TGDl~~~d~dG~l~~~GR~---dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~  403 (452)
T PRK07445        328 TDDLGYLDAQGYLHILGRN---SQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLE  403 (452)
T ss_pred             CCCEEEEcCCCCEEEEeec---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999998888889999988655 35678


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       404 ~l~~~~~~~L~~~  416 (452)
T PRK07445        404 ELKTAIKDQLSPF  416 (452)
T ss_pred             HHHHHHHHhCCcc
Confidence            9999999988754

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.80  E-value=5.3e-19  Score=126.81  Aligned_cols=90  Identities=17%  Similarity=0.182  Sum_probs=78.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC---Cc
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---EL   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---~~   77 (93)
                      .||.+++|++|+++|.||.   ||+||++|+||+|.|||++|.+||.|.+++|++++++..++.++++|+++++.   ..
T Consensus       496 TGDlg~~d~dG~l~i~GR~---dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~  572 (647)
T PTZ00237        496 SGDLGFKDENGYYTIVSRS---DDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSI  572 (647)
T ss_pred             CCcEEEECCCCeEEEEecc---CCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCC
Confidence            4899999999999999888   99999999999999999999999999999999999998889999999987432   22


Q ss_pred             CH----HHHHHHHcCcCCCC
Q psy12100         78 TE----QEISSYVEPKKPVL   93 (93)
Q Consensus        78 ~~----~~l~~~~~~~L~~~   93 (93)
                      +.    ++|+++++++|+++
T Consensus       573 ~~~~l~~~i~~~~~~~l~~~  592 (647)
T PTZ00237        573 DLNKLKNEINNIITQDIESL  592 (647)
T ss_pred             CHHHHHHHHHHHHHhhcCcc
Confidence            32    46678888877753

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.80  E-value=7.2e-19  Score=125.47  Aligned_cols=90  Identities=24%  Similarity=0.368  Sum_probs=81.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||++|.++|+|.+++|++.+++..++.+++++++.++...+  
T Consensus       487 TGDl~~~d~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~  563 (637)
T PRK00174        487 TGDGARRDEDGYYWITGRV---DDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDE  563 (637)
T ss_pred             CCceEEEcCCCcEEEEEec---ccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHH
Confidence            5899999999999999887   99999999999999999999999999999999999988889999999998765443  


Q ss_pred             -HHHHHHHHcCcCCCC
Q psy12100         79 -EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 -~~~l~~~~~~~L~~~   93 (93)
                       .++|+++++++|+.+
T Consensus       564 ~~~~l~~~l~~~l~~~  579 (637)
T PRK00174        564 LRKELRNWVRKEIGPI  579 (637)
T ss_pred             HHHHHHHHHHhhcCCc
Confidence             468999999888753

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.80  E-value=6.6e-19  Score=125.37  Aligned_cols=90  Identities=24%  Similarity=0.381  Sum_probs=81.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++|++|++++.||.   ||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+++++++.++...+  
T Consensus       479 TGDl~~~d~dG~l~i~GR~---dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~  555 (625)
T TIGR02188       479 TGDGARRDKDGYIWITGRV---DDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDE  555 (625)
T ss_pred             CCceEEEcCCCcEEEEecc---cCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHH
Confidence            4899999999999999887   99999999999999999999999999999999999988889999999998775543  


Q ss_pred             -HHHHHHHHcCcCCCC
Q psy12100         79 -EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 -~~~l~~~~~~~L~~~   93 (93)
                       .++|+++++++|+++
T Consensus       556 ~~~~l~~~~~~~l~~~  571 (625)
T TIGR02188       556 LRKELRKHVRKEIGPI  571 (625)
T ss_pred             HHHHHHHHHHhhcCCC
Confidence             368999999888753

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.80  E-value=4.7e-19  Score=124.29  Aligned_cols=90  Identities=27%  Similarity=0.371  Sum_probs=83.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.+||+.|.++|+|.+++|++.+++..++.++++++++++...+.+
T Consensus       431 TGDl~~~~~~g~l~~~GR~---dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~  507 (549)
T PRK07788        431 SGDVGYFDEDGLLFVDGRD---DDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDED  507 (549)
T ss_pred             cCceEEEcCCCCEEEeccC---cceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999998888999999999877677889


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       508 ~l~~~~~~~l~~~  520 (549)
T PRK07788        508 AIKDYVRDNLARY  520 (549)
T ss_pred             HHHHHHHHhhhcC
Confidence            9999999988764

>PRK07529 AMP-binding domain protein; Validated

Probab=99.80  E-value=6.1e-19  Score=126.02  Aligned_cols=88  Identities=26%  Similarity=0.427  Sum_probs=81.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.+||+.|.+||+|.+|+|++.+++..++.++++|++.++...+.+
T Consensus       449 TGDlg~~d~dG~l~i~GR~---~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~  525 (632)
T PRK07529        449 TGDLGRIDADGYFWLTGRA---KDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEA  525 (632)
T ss_pred             cCcEEEEcCCceEEEEecc---cCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999998888999999999888777888


Q ss_pred             HHHHHHcCcCC
Q psy12100         81 EISSYVEPKKP   91 (93)
Q Consensus        81 ~l~~~~~~~L~   91 (93)
                      +++++++++|+
T Consensus       526 ~l~~~~~~~l~  536 (632)
T PRK07529        526 ELLAFARDHIA  536 (632)
T ss_pred             HHHHHHHHhcc
Confidence            99999988875

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.79  E-value=1.1e-18  Score=129.99  Aligned_cols=88  Identities=19%  Similarity=0.167  Sum_probs=78.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|+||+++|.||.   ||+||++|.||+|.|||++|.+||.|.+|+|++++++. ++.++++|+++++...+.+
T Consensus       840 TGDlg~~d~dG~l~~~GR~---dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~~~  915 (994)
T PRK07868        840 TEYLFRRDDDGDYWLVDRR---GSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAITAA  915 (994)
T ss_pred             ccceEEEcCCCCEEEeccC---CCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCCHH
Confidence            4899999999999999888   99999999999999999999999999999999998875 5788999998877777889


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +|++++++ |+.+
T Consensus       916 ~L~~~l~~-l~~y  927 (994)
T PRK07868        916 DLTEALAS-LPVG  927 (994)
T ss_pred             HHHHHHHh-CCCC
Confidence            99999985 7653

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.77  E-value=2.6e-18  Score=121.05  Aligned_cols=90  Identities=24%  Similarity=0.457  Sum_probs=81.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.+||+|.++++++.+++..++.++++++.+++...+.+
T Consensus       434 TGDlg~~~~~G~l~i~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~  510 (560)
T PLN02574        434 TGDIAYFDEDGYLYIVDRL---KEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQE  510 (560)
T ss_pred             cceEEEEECCCeEEEEecc---hhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999988888889999998876666778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++.++++++|+++
T Consensus       511 ~l~~~~~~~l~~~  523 (560)
T PLN02574        511 AVINYVAKQVAPY  523 (560)
T ss_pred             HHHHHHHHhccCc
Confidence            9999999988763

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.77  E-value=4e-18  Score=121.49  Aligned_cols=90  Identities=30%  Similarity=0.377  Sum_probs=79.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL---   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---   77 (93)
                      .||.+++|++|++++.||.   ||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++++++++++...   
T Consensus       477 TGDl~~~d~dG~l~i~GR~---dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~  553 (629)
T PRK10524        477 TFDWGIRDADGYYFILGRT---DDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADR  553 (629)
T ss_pred             cCCcEEEcCCCcEEEEEEe---cCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccc
Confidence            4799999999999999888   9999999999999999999999999999999999998888999999998765322   


Q ss_pred             -----CHHHHHHHHcCcCCCC
Q psy12100         78 -----TEQEISSYVEPKKPVL   93 (93)
Q Consensus        78 -----~~~~l~~~~~~~L~~~   93 (93)
                           ..++++++++++|+.+
T Consensus       554 ~~~~~~~~~i~~~~~~~l~~~  574 (629)
T PRK10524        554 EARLALEKEIMALVDSQLGAV  574 (629)
T ss_pred             cchHHHHHHHHHHHHhhcCCC
Confidence                 1367888998888753

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.77  E-value=4.3e-18  Score=119.45  Aligned_cols=89  Identities=19%  Similarity=0.321  Sum_probs=80.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++++++|++++.||.   ||+|+++|+||+|.+||+.|.++|+|.+++|++.+++..++.+++++++.++...+..
T Consensus       385 TGD~~~~~~~g~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~  461 (529)
T PRK07867        385 SGDLAYRDADGYAYFAGRL---GDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPD  461 (529)
T ss_pred             eccEEEEeCCCcEEEeccc---cCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999998888999999999877777888


Q ss_pred             HHHHHHcCc--CCC
Q psy12100         81 EISSYVEPK--KPV   92 (93)
Q Consensus        81 ~l~~~~~~~--L~~   92 (93)
                      +++++++.+  |+.
T Consensus       462 ~l~~~~~~~~~l~~  475 (529)
T PRK07867        462 AFAEFLAAQPDLGP  475 (529)
T ss_pred             HHHHHHHhhccCCc
Confidence            999998764  654

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.77  E-value=6.6e-18  Score=113.31  Aligned_cols=89  Identities=24%  Similarity=0.205  Sum_probs=80.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.+++ .+|++++.||.   ||+||++|++|+|.+||+.|.++|+|.+|+|++.+++..++.++++++...+.....+
T Consensus       238 TGDl~~~-~~g~l~i~GR~---~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~  313 (358)
T PRK07824        238 TDDLGAL-DDGVLTVLGRA---DDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLE  313 (358)
T ss_pred             cccEEEE-eCCEEEEEecc---CCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHH
Confidence            4788999 89999999887   9999999999999999999999999999999999988888889999887766667788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       314 ~i~~~~~~~l~~~  326 (358)
T PRK07824        314 ALRAHVARTLDRT  326 (358)
T ss_pred             HHHHHHHhhCccc
Confidence            9999999988753

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.76  E-value=4.5e-18  Score=119.37  Aligned_cols=90  Identities=26%  Similarity=0.291  Sum_probs=82.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.+||+.|.++|+|.+++|++.+++..++.+++++++.++...+.+
T Consensus       420 TGDl~~~~~~g~l~~~GR~---dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~  496 (537)
T PRK13382        420 SGDVGYLDENGRLFVVGRD---DEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPE  496 (537)
T ss_pred             eCceEEEeCCCcEEEeccc---cceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999988778889999998877667788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       497 ~l~~~l~~~l~~~  509 (537)
T PRK13382        497 TLKQHVRDNLANY  509 (537)
T ss_pred             HHHHHHHHhccCC
Confidence            9999999988763

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.76  E-value=5.7e-18  Score=119.94  Aligned_cols=90  Identities=23%  Similarity=0.352  Sum_probs=80.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL---   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---   77 (93)
                      +||.+++|++|++++.||.   ||+||++|++|+|.+||+.|.+||.|.+++|++++++..++.+++++++.++...   
T Consensus       424 TGDlg~~d~dG~l~i~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~  500 (579)
T PLN03102        424 TGDVGVIHPDGHVEIKDRS---KDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKED  500 (579)
T ss_pred             cCceEEEcCCCeEEEEecc---CcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccccc
Confidence            5899999999999999887   9999999999999999999999999999999999998888899999998765332   


Q ss_pred             -------CHHHHHHHHcCcCCCC
Q psy12100         78 -------TEQEISSYVEPKKPVL   93 (93)
Q Consensus        78 -------~~~~l~~~~~~~L~~~   93 (93)
                             +..+++++++++|+.+
T Consensus       501 ~~~~~~~~~~~l~~~~~~~L~~~  523 (579)
T PLN03102        501 RVDKLVTRERDLIEYCRENLPHF  523 (579)
T ss_pred             ccccccccHHHHHHHHHhhcccc
Confidence                   3568999999988764

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.76  E-value=7.6e-18  Score=118.78  Aligned_cols=90  Identities=26%  Similarity=0.278  Sum_probs=79.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-----
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV-----   75 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-----   75 (93)
                      +||.+++|.+|++++.||.   ||+||++|+||+|.+||+.+.+||+|.+++|++.+++..++.+++++++.++.     
T Consensus       418 TGDl~~~d~dG~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~  494 (563)
T PLN02860        418 TGDIGWIDKAGNLWLIGRS---NDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDN  494 (563)
T ss_pred             ccceEEEcCCCCEEEeecc---cceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccc
Confidence            4899999999999999887   99999999999999999999999999999999999988889999999987652     


Q ss_pred             ---------CcCHHHHHHHHcC-cCCCC
Q psy12100         76 ---------ELTEQEISSYVEP-KKPVL   93 (93)
Q Consensus        76 ---------~~~~~~l~~~~~~-~L~~~   93 (93)
                               ..+.+++++++++ +|+++
T Consensus       495 ~~~~~~~~~~~~~~~l~~~~~~~~L~~~  522 (563)
T PLN02860        495 EKENAKKNLTLSSETLRHHCREKNLSRF  522 (563)
T ss_pred             cchhhcccccccHHHHHHHHhhCccccc
Confidence                     2355788999987 47753

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.75  E-value=6.9e-18  Score=122.64  Aligned_cols=88  Identities=23%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhh-cCCCcceEEEEeeeCCCCC-ceEEEEEEEC--CCCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIM-QIAGVADVAVVGVPDTLSG-EVPKAFVVKK--PGVE   76 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~--~~~~   76 (93)
                      .||.+++|++|+++|.||.   ||+||++|+||+|.|||++|. .||+|.+++|++++++..+ +.++++|+++  ++..
T Consensus       593 tGDl~~~d~dG~l~i~GR~---Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~  669 (728)
T PLN03052        593 HGDIFERTSGGYYRAHGRA---DDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN  669 (728)
T ss_pred             cCceEEECCCCeEEEEecC---CCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCC
Confidence            4799999999999999888   999999999999999999994 7999999999999988665 8899999987  5544


Q ss_pred             cCHHHHHHH----HcCcCC
Q psy12100         77 LTEQEISSY----VEPKKP   91 (93)
Q Consensus        77 ~~~~~l~~~----~~~~L~   91 (93)
                      .+.++|+++    ++++|+
T Consensus       670 ~~~~~L~~~i~~~i~~~l~  688 (728)
T PLN03052        670 PDLNELKKIFNSAIQKKLN  688 (728)
T ss_pred             CCHHHHHHHHHHHHHhhcC
Confidence            555555554    445544

>PRK09274 peptide synthase; Provisional

Probab=99.75  E-value=5.1e-18  Score=119.05  Aligned_cols=86  Identities=20%  Similarity=0.203  Sum_probs=72.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||++|.+||+|.+|++++++++ .++.++++|++.++...+..
T Consensus       424 TGDlg~~d~dG~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~-~~~~~~~~v~~~~~~~~~~~  499 (552)
T PRK09274        424 MGDLGYLDAQGRLWFCGRK---AHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVP-GAQRPVLCVELEPGVACSKS  499 (552)
T ss_pred             cCCEEEEccCCcEEEEecc---CCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCC-CCceEEEEEEccCccccchH
Confidence            5899999999999999887   9999999999999999999999999999999999876 35678888888876655555


Q ss_pred             HHHHHHcCcC
Q psy12100         81 EISSYVEPKK   90 (93)
Q Consensus        81 ~l~~~~~~~L   90 (93)
                      ++.+.+++.+
T Consensus       500 ~l~~~l~~~l  509 (552)
T PRK09274        500 ALYQELRALA  509 (552)
T ss_pred             HHhhhhHHHH
Confidence            5555555443

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.75  E-value=1.6e-17  Score=116.77  Aligned_cols=90  Identities=20%  Similarity=0.289  Sum_probs=81.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++++++|++++.||.   +|+||++|.+|+|.+||+++.++|+|.+++|++++++..+..+.+++++..+...+..
T Consensus       404 TGD~~~~~~dG~l~i~GR~---~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~  480 (542)
T PRK06155        404 TGDRVVRDADGWFRFVDRI---KDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPV  480 (542)
T ss_pred             ccceEEEcCCceEEEEecC---CCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999988777888888888877777889


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++|+++|+.+
T Consensus       481 ~~~~~~~~~l~~~  493 (542)
T PRK06155        481 ALVRHCEPRLAYF  493 (542)
T ss_pred             HHHHHHHhhCcCc
Confidence            9999999988763

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.75  E-value=9.1e-18  Score=115.58  Aligned_cols=87  Identities=21%  Similarity=0.258  Sum_probs=78.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++| +|++++.||.   ||+||++|.+|+|.+||+.|.++|+|.+++|++.+++..++.+++++++..  ..+.+
T Consensus       336 TGD~~~~~-~g~l~~~gR~---~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~  409 (458)
T PRK09029        336 TRDRGEWQ-NGELTILGRL---DNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVV  409 (458)
T ss_pred             CCCcEEEe-CCEEEEeccc---ccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--ccCHH
Confidence            58999999 9999999887   999999999999999999999999999999999999888889999888763  35678


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++|+++|+++
T Consensus       410 ~l~~~~~~~l~~~  422 (458)
T PRK09029        410 NLAEWLQDKLARF  422 (458)
T ss_pred             HHHHHHHhhchhc
Confidence            9999999998763

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.75  E-value=1.5e-17  Score=114.97  Aligned_cols=90  Identities=23%  Similarity=0.323  Sum_probs=82.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   +|+|+++|.+|+|.+||+.|.++|+|.++++++.+++..++.+++++++.++...+.+
T Consensus       375 TGDl~~~~~~g~~~~~GR~---~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  451 (496)
T PRK06839        375 TGDLARVDEDGFVYIVGRK---KEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEK  451 (496)
T ss_pred             ecceEEEcCCCcEEEeccc---cceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999998888899999999877777788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       452 ~l~~~~~~~l~~~  464 (496)
T PRK06839        452 DVIEHCRLFLAKY  464 (496)
T ss_pred             HHHHHHHhhCcCC
Confidence            9999999988764

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.75  E-value=1.1e-17  Score=118.63  Aligned_cols=90  Identities=19%  Similarity=0.183  Sum_probs=76.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCC-CCceEEEEEEECCCCCcCH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTL-SGEVPKAFVVKKPGVELTE   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~   79 (93)
                      .||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.++|+|.+|+|++++++. .+...++++++.++...+.
T Consensus       443 TGDlg~~~~dG~l~~~GR~---~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~  519 (600)
T PRK08279        443 TGDLMRDDGFGHAQFVDRL---GDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDL  519 (600)
T ss_pred             ecceEEEcCCccEEEeccc---CCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCH
Confidence            4799999999999999887   99999999999999999999999999999999998764 2444556666665556678


Q ss_pred             HHHHHHHcCcCCCC
Q psy12100         80 QEISSYVEPKKPVL   93 (93)
Q Consensus        80 ~~l~~~~~~~L~~~   93 (93)
                      ++++++|+++|+.+
T Consensus       520 ~~l~~~l~~~L~~~  533 (600)
T PRK08279        520 AALAAHLYERLPAY  533 (600)
T ss_pred             HHHHHHHHhhCccc
Confidence            99999999998864

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=1.7e-17  Score=112.77  Aligned_cols=81  Identities=16%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             Cccccee-ccCCeEEEeeeeccccceeecCC---eeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC
Q psy12100          1 MEEEKAL-SVAPYKKLAGGVKFLETIPRNPA---GKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE   76 (93)
Q Consensus         1 ~~~~~~~-d~~g~~~~~GR~gR~~d~I~~~G---~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   76 (93)
                      +||.+++ |++|+++|.||.   |     +|   +||+|. ||++|.+||+|.+|+|++++++.+++.++|+|++..  .
T Consensus       213 TGDlg~~~d~dG~l~~~gR~---~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~--~  281 (365)
T PRK09188        213 TGKKVYNFITRGLFSWSDGE---G-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL--P  281 (365)
T ss_pred             CCCEEEEEcCCCeEEEEecC---c-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC--C
Confidence            5899998 799999999887   5     78   799999 999999999999999999999999999999999863  3


Q ss_pred             cCHHHHHHHHcCcCCC
Q psy12100         77 LTEQEISSYVEPKKPV   92 (93)
Q Consensus        77 ~~~~~l~~~~~~~L~~   92 (93)
                      .+.++++++|+++|+.
T Consensus       282 ~~~~el~~~l~~~L~~  297 (365)
T PRK09188        282 ADEKSLRARLAGAKPP  297 (365)
T ss_pred             CCHHHHHHHHHhhchh
Confidence            5678999999999873

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.75  E-value=1.2e-17  Score=116.86  Aligned_cols=90  Identities=24%  Similarity=0.400  Sum_probs=81.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.+++|+||++++.||.   +|+||++|.+|+|.+||+++.++|+|.+|+|++.+++..++.++++++..+....+.+
T Consensus       412 TGD~~~~d~dG~l~~~gR~---~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~  488 (534)
T PRK05852        412 TGDLGSLSAAGDLSIRGRI---KELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAE  488 (534)
T ss_pred             cCceEEEeCCCcEEEEecc---hhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999988778889999988766556788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++.++++++|+.+
T Consensus       489 ~i~~~~~~~l~~~  501 (534)
T PRK05852        489 ELVQFCRERLAAF  501 (534)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999988764

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.74  E-value=1.7e-17  Score=115.54  Aligned_cols=90  Identities=27%  Similarity=0.364  Sum_probs=82.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|.||+|.+||+++.++|.|.++++++.+++..++.+.++++++++...+.+
T Consensus       402 TGDl~~~~~~g~~~~~GR~---~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~  478 (517)
T PRK08008        402 TGDTGYVDEEGFFYFVDRR---CNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEE  478 (517)
T ss_pred             ccceEEECCCCcEEEeecc---cceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHH
Confidence            4799999999999999887   9999999999999999999999999999999999988778889999999877666778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+++
T Consensus       479 ~l~~~~~~~l~~~  491 (517)
T PRK08008        479 EFFAFCEQNMAKF  491 (517)
T ss_pred             HHHHHHHhhcccc
Confidence            9999999988753

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.74  E-value=2.7e-17  Score=115.58  Aligned_cols=89  Identities=18%  Similarity=0.267  Sum_probs=79.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|.+|++++.||.   ||+||++|++|+|.+||+.|.++|+|.+|+|++.++...++.+++++++.++...+.+
T Consensus       384 TGD~~~~~~dg~l~i~GR~---~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~  460 (540)
T PRK13388        384 SGDLAYRDADGWIYFAGRT---ADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPD  460 (540)
T ss_pred             ccceEEEcCCCcEEEeccC---CceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999988778888888888877667788


Q ss_pred             HHHHHHcCc--CCC
Q psy12100         81 EISSYVEPK--KPV   92 (93)
Q Consensus        81 ~l~~~~~~~--L~~   92 (93)
                      +++++++.+  |++
T Consensus       461 ~l~~~l~~~~~l~~  474 (540)
T PRK13388        461 AFAAFLAAQPDLGT  474 (540)
T ss_pred             HHHHHHHhhccCCc
Confidence            899888753  554

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.74  E-value=1.9e-17  Score=116.16  Aligned_cols=90  Identities=20%  Similarity=0.342  Sum_probs=81.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.++.|++|++++.||.   +|+||++|++|+|.+||+.+.++|.|.+++++++++...++.++++++..++...+.+
T Consensus       413 TGD~~~~~~dg~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  489 (539)
T PRK07008        413 TGDVATIDADGFMQITDRS---KDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTRE  489 (539)
T ss_pred             cCceEEEcCCCcEEEeecc---cCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHH
Confidence            4899999999999999887   9999999999999999999999999999999999988778888888888776666788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+++
T Consensus       490 ~l~~~~~~~l~~~  502 (539)
T PRK07008        490 ELLAFYEGKVAKW  502 (539)
T ss_pred             HHHHHHHhhcccc
Confidence            9999999988753

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.74  E-value=2.4e-17  Score=116.15  Aligned_cols=90  Identities=28%  Similarity=0.426  Sum_probs=81.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++.|.+|++++.||.   +|+||++|.+|+|.+||+.|.++|+|.+++|++++++..++.+++++++.++...+.+
T Consensus       437 TGDlg~~~~~G~l~i~GR~---~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~  513 (562)
T PRK05677        437 TGDIALIQEDGYMRIVDRK---KDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKE  513 (562)
T ss_pred             ccceEEECCCCcEEEEecC---cCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999988888889999988766667788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+++
T Consensus       514 ~l~~~~~~~l~~~  526 (562)
T PRK05677        514 QVMEHMRANLTGY  526 (562)
T ss_pred             HHHHHHHHhhhhc
Confidence            9999999988753

>PLN02246 4-coumarate--CoA ligase

Probab=99.73  E-value=2.8e-17  Score=115.14  Aligned_cols=90  Identities=29%  Similarity=0.433  Sum_probs=81.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.++++++|++++.||.   ||+||++|++|+|.+||+.|.++|+|.+++|++.++...++.++++++..++...+.+
T Consensus       416 TGD~~~~~~~g~l~~~GR~---dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  492 (537)
T PLN02246        416 TGDIGYIDDDDELFIVDRL---KELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITED  492 (537)
T ss_pred             ecceEEEeCCCeEEEEecc---cceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999888888888999988876666778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       493 ~l~~~l~~~l~~~  505 (537)
T PLN02246        493 EIKQFVAKQVVFY  505 (537)
T ss_pred             HHHHHHHhhCcCc
Confidence            9999999988753

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.73  E-value=2.7e-17  Score=114.21  Aligned_cols=90  Identities=26%  Similarity=0.320  Sum_probs=78.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++|++|++++.||.   ||+||++|++|+|.+||+.|.++|+|.++++++++++..++.+++++++.++...+  
T Consensus       383 tGDl~~~~~dg~l~~~gR~---~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~  459 (501)
T PRK13390        383 VGDLGSVDEDGYLYLADRK---SFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDE  459 (501)
T ss_pred             cCceEEECCCCeEEEeecc---ccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchh
Confidence            5899999999999999887   99999999999999999999999999999999999988888999998887654322  


Q ss_pred             -HHHHHHHHcCcCCCC
Q psy12100         79 -EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 -~~~l~~~~~~~L~~~   93 (93)
                       .+++.++++.+|+.+
T Consensus       460 ~~~~l~~~~~~~l~~~  475 (501)
T PRK13390        460 LARELIDYTRSRIAHY  475 (501)
T ss_pred             hHHHHHHHHHHhcccC
Confidence             468888988888753

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.73  E-value=3.7e-17  Score=111.56  Aligned_cols=88  Identities=18%  Similarity=0.266  Sum_probs=78.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.++.|++|++++.||.   ||+||++|++|+|.+||+.+.++|+|.+++|++.+++..++.+.++++...  ..+..
T Consensus       295 TGDl~~~~~dg~l~~~GR~---~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~  369 (414)
T PRK08308        295 TKDLGYKSERGTLHFMGRM---DDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPV  369 (414)
T ss_pred             CCceEEECCCccEEEeccc---CCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHH
Confidence            5899999999999999887   999999999999999999999999999999999999888888888887654  45778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       370 ~l~~~l~~~l~~~  382 (414)
T PRK08308        370 QLREWCIQHLAPY  382 (414)
T ss_pred             HHHHHHHHhCccc
Confidence            8999999988753

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.73  E-value=3.5e-17  Score=118.13  Aligned_cols=90  Identities=17%  Similarity=0.270  Sum_probs=78.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++|.+|++++.||.   ||+||++|+||+|.|||+.|.++|.|.+++|++.++...++.+++++++..+...+  
T Consensus       369 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~  445 (705)
T PRK06060        369 TRDRVCIDSDGWVTYRCRA---DDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGS  445 (705)
T ss_pred             CCeeEEECCCceEEEeccc---CceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChH
Confidence            5899999999999999887   99999999999999999999999999999999999887788899999987654333  


Q ss_pred             -HHHHHHHHcCcCCCC
Q psy12100         79 -EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 -~~~l~~~~~~~L~~~   93 (93)
                       ..+++++++++|+.+
T Consensus       446 ~~~~i~~~l~~~L~~~  461 (705)
T PRK06060        446 VMRDLHRGLLNRLSAF  461 (705)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence             357888898888764

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.73  E-value=3.5e-17  Score=113.53  Aligned_cols=89  Identities=21%  Similarity=0.297  Sum_probs=80.5

Q ss_pred             cccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHH
Q psy12100          2 EEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQE   81 (93)
Q Consensus         2 ~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~   81 (93)
                      +|.+++|.+|++++.||.   +|+|+++|.+|+|.+||+.+.++|.|.+++|++.+++..++.++++++...+...+.++
T Consensus       399 GD~~~~~~~g~l~~~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~  475 (515)
T TIGR03098       399 GDTVRRDEEGFLYFVGRR---DEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAA  475 (515)
T ss_pred             cceEEEcCCceEEEEecc---ccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHH
Confidence            789999999999999887   99999999999999999999999999999999999988888898888876666667889


Q ss_pred             HHHHHcCcCCCC
Q psy12100         82 ISSYVEPKKPVL   93 (93)
Q Consensus        82 l~~~~~~~L~~~   93 (93)
                      ++++++++|+++
T Consensus       476 l~~~l~~~l~~~  487 (515)
T TIGR03098       476 LLAECRARLPNY  487 (515)
T ss_pred             HHHHHHhhCccc
Confidence            999999988753

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.73  E-value=4.5e-17  Score=113.63  Aligned_cols=90  Identities=27%  Similarity=0.364  Sum_probs=81.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|++|+|.+||+.|.++|.|.++++++.++...++.+.+++++.++...+..
T Consensus       400 TGDl~~~d~~G~l~i~GR~---~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~  476 (516)
T PRK13383        400 TGDMGYLDNAGRLFIVGRE---DDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAA  476 (516)
T ss_pred             cceeEEEcCCccEEEeccc---cceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999988788899999998876666778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       477 ~l~~~~~~~l~~~  489 (516)
T PRK13383        477 QLRDYLKDRVSRF  489 (516)
T ss_pred             HHHHHHHHhcccC
Confidence            8999999888653

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.72  E-value=5.1e-17  Score=112.44  Aligned_cols=90  Identities=20%  Similarity=0.255  Sum_probs=80.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+|+++|++|+|.+||+.|.++|.|.++++++.+++..++..++++++.++...+..
T Consensus       365 TGDl~~~~~~g~l~i~GR~---~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  441 (488)
T PRK09088        365 TGDIARRDADGFFWVVDRK---KDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLE  441 (488)
T ss_pred             ecceEEEcCCCcEEEeccc---cceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHH
Confidence            4799999999999999887   9999999999999999999999999999999999887777788888888766556778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++.++++++|+++
T Consensus       442 ~l~~~~~~~l~~~  454 (488)
T PRK09088        442 RIRSHLSTRLAKY  454 (488)
T ss_pred             HHHHHHHhhCcCC
Confidence            8999999888753

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.72  E-value=1.7e-17  Score=118.35  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=74.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhc-CCCcce--EEEEeeeC-------------------
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ-IAGVAD--VAVVGVPD-------------------   58 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~-~~~v~~--~~v~~~~~-------------------   58 (93)
                      +||.++++ +|+++|.||.   ||+||++|+||+|.|||+.|.+ ||.|.+  ++|+++++                   
T Consensus       468 TGDlg~~~-dG~l~i~GR~---~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~  543 (631)
T PRK07769        468 TGDYGVYF-DGELYITGRV---KDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDP  543 (631)
T ss_pred             ccccccEE-CCEEEEEccc---ccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEeccccccccccccccccccccc
Confidence            47889985 9999999887   9999999999999999999986 899987  88999988                   


Q ss_pred             CCCCceEEEEEEECCCC-CcCHHHHHHHHcCcCC
Q psy12100         59 TLSGEVPKAFVVKKPGV-ELTEQEISSYVEPKKP   91 (93)
Q Consensus        59 ~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~~~L~   91 (93)
                      +..++.+++++++.++. ..+..+|.++|+++|+
T Consensus       544 ~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~  577 (631)
T PRK07769        544 EDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIA  577 (631)
T ss_pred             CCCCccEEEEEEecCccccccHHHHHHHHHHHHH
Confidence            45678899999988763 4567888888887665

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.72  E-value=6.4e-17  Score=114.05  Aligned_cols=90  Identities=22%  Similarity=0.344  Sum_probs=82.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.+++|++|++++.||.   ||++|++|.+|+|.+||+.+.++|.|.++++++.++...++.+++++++.++...+..
T Consensus       449 TGD~~~~~~~g~l~i~gR~---dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~  525 (573)
T PRK05605        449 TGDVVVMEEDGFIRIVDRI---KELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPE  525 (573)
T ss_pred             cCCEEEEcCCCcEEEEecc---ccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHH
Confidence            4799999999999999887   9999999999999999999999999999999999988888899999998877667788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +|+++++++|+.+
T Consensus       526 ~l~~~~~~~l~~~  538 (573)
T PRK05605        526 GLRAYCREHLTRY  538 (573)
T ss_pred             HHHHHHHHhCccc
Confidence            9999999888753

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.72  E-value=4.3e-17  Score=115.02  Aligned_cols=90  Identities=29%  Similarity=0.497  Sum_probs=79.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++|.+|++++.||.   ||+||++|+||+|.+||+.|.++|.|.+++|++.+++..++.+++++++.++...+  
T Consensus       436 TGDl~~~~~~g~l~~~GR~---~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~  512 (570)
T PRK04319        436 SGDSAYMDEDGYFWFQGRV---DDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEE  512 (570)
T ss_pred             eCcEEEECCCeeEEEEecC---CCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHH
Confidence            4799999999999999887   99999999999999999999999999999999999988889999999987764433  


Q ss_pred             -HHHHHHHHcCcCCCC
Q psy12100         79 -EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 -~~~l~~~~~~~L~~~   93 (93)
                       .++++++++++|+.+
T Consensus       513 ~~~~l~~~~~~~l~~~  528 (570)
T PRK04319        513 LKEEIRGFVKKGLGAH  528 (570)
T ss_pred             HHHHHHHHHHHhcccc
Confidence             268889998888753

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.72  E-value=5.8e-17  Score=112.63  Aligned_cols=90  Identities=23%  Similarity=0.218  Sum_probs=81.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|.+|+|.+||+.+.++|.|.++++++.+++..++.+.+++++.++...+.+
T Consensus       412 TGD~~~~~~~g~l~~~GR~---~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  488 (533)
T PRK07798        412 PGDRARVEADGTITLLGRG---SVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLA  488 (533)
T ss_pred             cCcEEEEcCCCcEEEEccc---cceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999888778888899988877667889


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       489 ~l~~~l~~~l~~~  501 (533)
T PRK07798        489 ELRAHCRSSLAGY  501 (533)
T ss_pred             HHHHHHhhhcccC
Confidence            9999999988653

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.72  E-value=7.4e-17  Score=112.98  Aligned_cols=90  Identities=29%  Similarity=0.333  Sum_probs=81.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++.|++|++++.||.   ||+||++|.+|+|.+||+.|.++|+|.++++++.++...++.+++++++.++...+..
T Consensus       420 TGDl~~~d~dg~l~~~GR~---~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (545)
T PRK08162        420 TGDLAVLHPDGYIKIKDRS---KDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEE  496 (545)
T ss_pred             cCceEEEcCCccEEEEecc---cceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999888777889999998876666788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++++++++.|+.+
T Consensus       497 ~l~~~~~~~l~~~  509 (545)
T PRK08162        497 EIIAHCREHLAGF  509 (545)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999988763

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.72  E-value=6.1e-17  Score=112.14  Aligned_cols=90  Identities=23%  Similarity=0.320  Sum_probs=81.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|.+|++++.||.   ||+||++|.+++|.+||+.|.++|+|.++++++.+++..++.+.+++++.+....+..
T Consensus       377 TGDl~~~~~~g~l~~~GR~---~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  453 (497)
T PRK06145        377 SGDVGYLDEEGFLYLTDRK---KDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLE  453 (497)
T ss_pred             ccceEEEcCCCcEEEeccc---cceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999988778889999998766666788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++.++++++|+++
T Consensus       454 ~l~~~~~~~l~~~  466 (497)
T PRK06145        454 ALDRHCRQRLASF  466 (497)
T ss_pred             HHHHHHHHhhhcC
Confidence            9999999988753

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.72  E-value=5.3e-17  Score=113.63  Aligned_cols=90  Identities=23%  Similarity=0.366  Sum_probs=80.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC--CcC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV--ELT   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~   78 (93)
                      .||.+++|.+|++++.||.   ||+||++|.||+|.+||++|.++|+|.+++|++.++...++.++++++++++.  ..+
T Consensus       420 TGDl~~~~~~g~l~~~GR~---~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~  496 (546)
T PRK08314        420 TGDLGRMDEEGYFFITDRL---KRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTT  496 (546)
T ss_pred             cCCEEEEcCCCcEEEEecc---hhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCC
Confidence            4799999999999999887   99999999999999999999999999999999999887888899999987653  345


Q ss_pred             HHHHHHHHcCcCCCC
Q psy12100         79 EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 ~~~l~~~~~~~L~~~   93 (93)
                      .++++++|+++|+++
T Consensus       497 ~~~l~~~~~~~l~~~  511 (546)
T PRK08314        497 EEEIIAWAREHMAAY  511 (546)
T ss_pred             HHHHHHHHHHhcccC
Confidence            688999999988764

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.72  E-value=8.1e-17  Score=112.58  Aligned_cols=88  Identities=23%  Similarity=0.377  Sum_probs=79.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+|+++|++|+|.+||+.|.++|+|.++++++.++...++.++++++++++ ..+..
T Consensus       412 TGDl~~~~~~g~l~~~gR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~~~~~  487 (527)
T TIGR02275       412 TGDLVRLTPEGYIVVVGRA---KDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-ALKAA  487 (527)
T ss_pred             cCceEEEcCCccEEEEecc---cceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-CCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999998888889999988755 35778


Q ss_pred             HHHHHHcCc-CCC
Q psy12100         81 EISSYVEPK-KPV   92 (93)
Q Consensus        81 ~l~~~~~~~-L~~   92 (93)
                      +++++++++ |+.
T Consensus       488 ~l~~~l~~~~l~~  500 (527)
T TIGR02275       488 QLRRFLRERGLAE  500 (527)
T ss_pred             HHHHHHHhCCCcc
Confidence            999999875 765

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.71  E-value=5.6e-17  Score=113.89  Aligned_cols=90  Identities=26%  Similarity=0.373  Sum_probs=81.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++++++|++++.||.   +|+|+++|++|+|.+||+.|.++|.|.+++|+++++...++.+++++++.++...+.+
T Consensus       421 TGD~~~~~~dG~l~~~GR~---~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~  497 (546)
T PLN02330        421 TGDIGYIDDDGDIFIVDRI---KELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEE  497 (546)
T ss_pred             cccEEEEeCCCcEEEEech---HHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999988888889999998876666778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++.+|+.+
T Consensus       498 ~l~~~~~~~l~~~  510 (546)
T PLN02330        498 DILNFVAANVAHY  510 (546)
T ss_pred             HHHHHHHHhcccc
Confidence            8999999988753

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.71  E-value=9.9e-17  Score=112.00  Aligned_cols=90  Identities=26%  Similarity=0.407  Sum_probs=80.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.+++|.+|++++.||.   ||+||++|++|+|.+||+.+.++|.|.++++++.+++..++.++++++..++...+.+
T Consensus       398 TGDl~~~~~~g~l~~~GR~---dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (528)
T PRK07470        398 TGDLGHLDARGFLYITGRA---SDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEA  474 (528)
T ss_pred             cceeEEEccCCeEEEeCCc---cceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHH
Confidence            4799999999999999887   9999999999999999999999999999999999998777888888888776667788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++++++++.|+++
T Consensus       475 ~~~~~l~~~l~~~  487 (528)
T PRK07470        475 ELLAWLDGKVARY  487 (528)
T ss_pred             HHHHHHHHhhhcC
Confidence            9999999888753

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.71  E-value=8.5e-17  Score=113.30  Aligned_cols=90  Identities=28%  Similarity=0.411  Sum_probs=81.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++++.+|++++.||.   +|+|+++|.+|+|.+||+.+.++|+|.++++++.+++..++.+++++++.++...+.+
T Consensus       446 TGDl~~~~~~g~l~i~GR~---~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  522 (567)
T PRK06178        446 TGDIGKIDEQGFLHYLGRR---KEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAA  522 (567)
T ss_pred             ecceEEEecCCeEEEEecc---cccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHH
Confidence            4799999999999999887   9999999999999999999999999999999999887777889999998776666788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       523 ~l~~~~~~~l~~~  535 (567)
T PRK06178        523 ALQAWCRENMAVY  535 (567)
T ss_pred             HHHHHHHhcCccc
Confidence            9999999988753

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.71  E-value=1.3e-16  Score=112.36  Aligned_cols=90  Identities=24%  Similarity=0.370  Sum_probs=81.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|.+|++++.||.   ||+|+++|.||+|.+||+.|.++|.|.+++|++.++...++.++++++..++...+.+
T Consensus       435 TGD~~~~~~~g~~~~~GR~---dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  511 (563)
T PRK06710        435 TGDVGYMDEDGFFYVKDRK---KDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEE  511 (563)
T ss_pred             ccceEEEcCCCcEEEeecc---ccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHH
Confidence            5799999999999999887   9999999999999999999999999999999999988778889999998877667788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       512 ~l~~~~~~~l~~~  524 (563)
T PRK06710        512 ELNQFARKYLAAY  524 (563)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999887753

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.70  E-value=1.7e-16  Score=111.21  Aligned_cols=90  Identities=24%  Similarity=0.420  Sum_probs=81.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   +|+|+++|.+|+|.+||+.|.++|+|.++++++.++...++.+++++++.++...+..
T Consensus       432 TGDl~~~~~dg~l~i~GR~---~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  508 (558)
T PRK12583        432 TGDLATMDEQGYVRIVGRS---KDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEE  508 (558)
T ss_pred             ccceEEECCCccEEEEecc---cceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHH
Confidence            4789999999999999887   9999999999999999999999999999999999988777888999998776666788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++.+++++|+.+
T Consensus       509 ~i~~~~~~~L~~~  521 (558)
T PRK12583        509 ELREFCKARIAHF  521 (558)
T ss_pred             HHHHHHHhhcccC
Confidence            9999999988764

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.70  E-value=2.2e-16  Score=110.90  Aligned_cols=89  Identities=24%  Similarity=0.412  Sum_probs=79.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++++++|++++.||.   ||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++++.++...+.+
T Consensus       423 TGD~~~~~~~g~l~~~gR~---~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  499 (547)
T PRK13295        423 TGDLARIDADGYIRISGRS---KDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFE  499 (547)
T ss_pred             cceEEEEcCCceEEEEecc---CCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999988888889999998877666778


Q ss_pred             HHHHHHcC-cCCC
Q psy12100         81 EISSYVEP-KKPV   92 (93)
Q Consensus        81 ~l~~~~~~-~L~~   92 (93)
                      ++.+++++ .|+.
T Consensus       500 ~l~~~~~~~~l~~  512 (547)
T PRK13295        500 EMVEFLKAQKVAK  512 (547)
T ss_pred             HHHHHHHhccCcc
Confidence            89999885 5654

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.70  E-value=2e-16  Score=110.73  Aligned_cols=89  Identities=20%  Similarity=0.184  Sum_probs=79.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|.+|++++.||.   ||+||++|.+|+|.+||+.|.++|+|.++++++.+.. ++..+++++++.++...+.+
T Consensus       410 TGDl~~~~~~g~l~~~GR~---~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~vv~~~~~~~~~~  485 (540)
T PRK06164        410 TGDLGYTRGDGQFVYQTRM---GDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD-GKTVPVAFVIPTDGASPDEA  485 (540)
T ss_pred             cCCeEEEcCCceEEEEeec---CCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCC-CceeEEEEEEeCCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999998843 55778899998877667889


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++.++|+++|+++
T Consensus       486 ~l~~~~~~~l~~~  498 (540)
T PRK06164        486 GLMAACREALAGF  498 (540)
T ss_pred             HHHHHHHhhcccC
Confidence            9999999988763

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.70  E-value=1.8e-16  Score=108.45  Aligned_cols=85  Identities=21%  Similarity=0.216  Sum_probs=72.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      ++|.++.|++|+++|.||.   ||+||++|+||+|.+||+.|.++|+|.++++..     .++.++++++++++...+  
T Consensus       279 tgD~g~~d~~G~l~i~GR~---dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~  350 (386)
T TIGR02372       279 LQDRLAWDKDGGFTILGRK---DEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAEL  350 (386)
T ss_pred             cCceEEEcCCCcEEEeccc---CCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHH
Confidence            4799999999999999887   999999999999999999999999999998852     356788999987654333  


Q ss_pred             HHHHHHHHcCcCCCC
Q psy12100         79 EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 ~~~l~~~~~~~L~~~   93 (93)
                      .++++++++++|+.+
T Consensus       351 ~~~l~~~~~~~L~~~  365 (386)
T TIGR02372       351 EIELRATAARHLPAP  365 (386)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            468899999888763

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.69  E-value=2.5e-16  Score=110.53  Aligned_cols=89  Identities=25%  Similarity=0.336  Sum_probs=81.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.++++++|++++.||.   +|+|+++|.+|+|.+||+.+.++|.|.+|++++.+++..++.+.+++++.++...+.+
T Consensus       414 TGDl~~~~~~g~~~~~GR~---~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  490 (542)
T PRK06018        414 TGDVATIDAYGYMRITDRS---KDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATRE  490 (542)
T ss_pred             cCCEEEEcCCccEEEEecC---CCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHH
Confidence            4789999999999999887   9999999999999999999999999999999999988778888999998877777788


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      ++.++++++|+.
T Consensus       491 ~l~~~~~~~l~~  502 (542)
T PRK06018        491 EILKYMDGKIAK  502 (542)
T ss_pred             HHHHHHHhhCcc
Confidence            999999998875

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.69  E-value=2.3e-16  Score=110.54  Aligned_cols=89  Identities=26%  Similarity=0.383  Sum_probs=79.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|.+|++++.||.   ||+|+++|++|+|.+||+.|.++|+|.+++|++.++...++.+.+++++.++...+..
T Consensus       421 TGD~~~~~~~g~l~~~gR~---~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~  497 (538)
T TIGR03208       421 TGDLAFQDAEGYIRINGRS---KDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFA  497 (538)
T ss_pred             ccceEEECCCCcEEEEecc---CceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999988778889999998877667788


Q ss_pred             HHHHHHcC-cCCC
Q psy12100         81 EISSYVEP-KKPV   92 (93)
Q Consensus        81 ~l~~~~~~-~L~~   92 (93)
                      ++.++++. +|+.
T Consensus       498 ~l~~~~~~~~l~~  510 (538)
T TIGR03208       498 AMVAFLKAQKVAL  510 (538)
T ss_pred             HHHHHHHhcchhh
Confidence            89998875 5543

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.69  E-value=3e-16  Score=109.18  Aligned_cols=90  Identities=26%  Similarity=0.379  Sum_probs=80.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .+|.+++|.+|++++.||.   ||+||++|.+|+|.+||+.|.++|+|.++++++.++...++.+++++++.++...+.+
T Consensus       383 TGD~~~~~~~g~~~~~GR~---~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  459 (509)
T PRK12406        383 SGDVGYLDADGYLFLCDRK---RDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEA  459 (509)
T ss_pred             EccEEEEcCCceEEEeecc---cceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHH
Confidence            3788999999999999887   9999999999999999999999999999999999988777888899988766556788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+++
T Consensus       460 ~l~~~l~~~l~~~  472 (509)
T PRK12406        460 DIRAQLKARLAGY  472 (509)
T ss_pred             HHHHHHHHhcccC
Confidence            9999999888753

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.69  E-value=2e-16  Score=114.49  Aligned_cols=87  Identities=17%  Similarity=0.242  Sum_probs=74.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|+||++++.||.   ||+||++|+||+|.|||+.+.+++.+.++++++.+++..++.+++++.   +...+.+
T Consensus       595 TGDlg~~d~dG~l~i~GR~---~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~~~~  668 (718)
T PRK08043        595 TGDIVRFDEQGFVQIQGRA---KRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSELTRE  668 (718)
T ss_pred             cCCEEEEcCCCcEEEEecC---CCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---CcccCHH
Confidence            4899999999999999887   999999999999999999999998888888888888877888777653   3345678


Q ss_pred             HHHHHHcCc-CCCC
Q psy12100         81 EISSYVEPK-KPVL   93 (93)
Q Consensus        81 ~l~~~~~~~-L~~~   93 (93)
                      +++++++++ |+.+
T Consensus       669 ~l~~~~~~~~l~~~  682 (718)
T PRK08043        669 KLQQYAREHGVPEL  682 (718)
T ss_pred             HHHHHHHhcCCCcc
Confidence            899999886 7653

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.69  E-value=2.9e-16  Score=109.01  Aligned_cols=90  Identities=23%  Similarity=0.316  Sum_probs=81.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++++++|++++.||.   ||+|+++|.+|+|.+||+.+.++|+|.++++++.+++..++.+++++++.++...+.+
T Consensus       399 TGDl~~~~~~g~l~i~gR~---~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  475 (523)
T PRK08316        399 SGDLGVMDEEGYITVVDRK---KDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTED  475 (523)
T ss_pred             ccceEEEcCCceEEEeccc---ccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999998888899999998876666778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++.++++++|+.+
T Consensus       476 ~l~~~~~~~l~~~  488 (523)
T PRK08316        476 ELIAHCRARLAGF  488 (523)
T ss_pred             HHHHHHHHhcccC
Confidence            8999998887753

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.68  E-value=4.1e-16  Score=108.05  Aligned_cols=90  Identities=33%  Similarity=0.458  Sum_probs=81.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++++.+|++++.||.   +|+|+++|.+++|.+||+.|.++|+|.++++++.++...++.+.++++.+++...+..
T Consensus       396 tGDl~~~~~~g~~~~~GR~---~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  472 (513)
T PRK07656        396 TGDLGRLDEEGYLYIVDRK---KDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEE  472 (513)
T ss_pred             ccceEEEcCCeeEEEEecc---cceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHH
Confidence            4799999999999999887   9999999999999999999999999999999999888778888999998766667788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++.++++++|+++
T Consensus       473 ~l~~~~~~~l~~~  485 (513)
T PRK07656        473 ELIAYCREHLAKY  485 (513)
T ss_pred             HHHHHHHhhcccc
Confidence            9999999988763

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.68  E-value=2.3e-16  Score=111.44  Aligned_cols=90  Identities=24%  Similarity=0.376  Sum_probs=80.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC---c
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE---L   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~   77 (93)
                      +||.+++|++|++++.||.   +|+||++|.+|+|.+||+.|.+||.|.+++|++.+++..++.+++++++.++..   .
T Consensus       434 TGD~~~~~~dg~l~~~GR~---~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~  510 (576)
T PRK05620        434 TGDVGSVTRDGFLTIHDRA---RDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRE  510 (576)
T ss_pred             cCceEEEcCCceEEEEech---hhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccc
Confidence            4789999999999999887   999999999999999999999999999999999999888888899988876643   3


Q ss_pred             CHHHHHHHHcCcCCCC
Q psy12100         78 TEQEISSYVEPKKPVL   93 (93)
Q Consensus        78 ~~~~l~~~~~~~L~~~   93 (93)
                      +.++++++++++|+++
T Consensus       511 ~~~~l~~~l~~~L~~~  526 (576)
T PRK05620        511 TAERLRDQLRDRLPNW  526 (576)
T ss_pred             cHHHHHHHHHhhCccc
Confidence            5689999999988863

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.68  E-value=2e-16  Score=109.60  Aligned_cols=86  Identities=20%  Similarity=0.337  Sum_probs=75.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|.+|++++.||.   +|+||++|.+|+|.+||+.+.++|+|.+++|++.+++..++.+++++..    ..+.+
T Consensus       365 TGDl~~~d~~g~l~i~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~  437 (487)
T PRK07638        365 VRDVGYEDEEGFIYIVGRE---KNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQ  437 (487)
T ss_pred             cCccEeEcCCCeEEEEecC---CCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999988778888887763    34677


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       438 ~l~~~~~~~l~~~  450 (487)
T PRK07638        438 QLKSFCLQRLSSF  450 (487)
T ss_pred             HHHHHHHHHhhcc
Confidence            8888888877653

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.68  E-value=1.1e-16  Score=112.23  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=60.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEEC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK   72 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   72 (93)
                      +||.+++| +|++++.||.   ||+||++|+||+|.|||++|.+||+|.+++|++++++..++.+.++++..
T Consensus       400 TGDl~~~~-~G~l~~~GR~---dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~  467 (525)
T PRK05851        400 TGDLGYLV-DGGLVVCGRA---KELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAE  467 (525)
T ss_pred             ccceEEEE-CCEEEEEeec---CCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEE
Confidence            47999997 7999999887   99999999999999999999999999999999999877777776666543

>PRK08315 AMP-binding domain protein; Validated

Probab=99.68  E-value=4.9e-16  Score=109.05  Aligned_cols=90  Identities=24%  Similarity=0.454  Sum_probs=80.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|.+|++++.||.   +|+|+++|++|+|.+||+.+.++|+|.+++|++++++..++.+++++++.++...+.+
T Consensus       431 TGD~~~~~~dg~~~~~GR~---d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  507 (559)
T PRK08315        431 TGDLAVMDEEGYVNIVGRI---KDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEE  507 (559)
T ss_pred             ccceEEEcCCceEEEEeec---cceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHH
Confidence            4789999999999999888   9999999999999999999999999999999999888777888898888776666788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       508 ~l~~~l~~~l~~~  520 (559)
T PRK08315        508 DVRDFCRGKIAHY  520 (559)
T ss_pred             HHHHHHHhhcccc
Confidence            9999999888753

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.67  E-value=5.8e-16  Score=108.59  Aligned_cols=90  Identities=26%  Similarity=0.384  Sum_probs=79.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-CcCH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV-ELTE   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~   79 (93)
                      .+|.++++++|++++.||.   ||+||++|++|+|.+||+.+.++|.|.++++++++++..++.+++++++.++. ..+.
T Consensus       425 TGD~~~~~~~g~l~i~GR~---~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  501 (541)
T TIGR03205       425 TGDIGYMDTDGYFFLVDRK---KDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSL  501 (541)
T ss_pred             cCceEEEcCCceEEEEccc---cCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCH
Confidence            3789999999999999887   99999999999999999999999999999999999887788889999887654 2567


Q ss_pred             HHHHHHHcCcCCCC
Q psy12100         80 QEISSYVEPKKPVL   93 (93)
Q Consensus        80 ~~l~~~~~~~L~~~   93 (93)
                      +++.++++++|+++
T Consensus       502 ~~l~~~~~~~l~~~  515 (541)
T TIGR03205       502 DELRAFLAGKLGKH  515 (541)
T ss_pred             HHHHHHHHhhcccc
Confidence            88999999988753

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.67  E-value=4.3e-16  Score=118.71  Aligned_cols=90  Identities=12%  Similarity=0.091  Sum_probs=76.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-C---
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV-E---   76 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~---   76 (93)
                      +||.+++++||+++|.||.   ||+||++|+||+|.|||+.|.+||.|.+++|++.++...+..+++++++.... .   
T Consensus       682 TGDlg~~~~dG~l~~~GR~---dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~  758 (1389)
T TIGR03443       682 TGDLGRYLPDGNVECCGRA---DDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEE  758 (1389)
T ss_pred             cCCceeEcCCCCEEEeccc---CCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccc
Confidence            4899999999999999887   99999999999999999999999999999999888877778899999876221 0   


Q ss_pred             ----------------------cCHHHHHHHHcCcCCCC
Q psy12100         77 ----------------------LTEQEISSYVEPKKPVL   93 (93)
Q Consensus        77 ----------------------~~~~~l~~~~~~~L~~~   93 (93)
                                            ....+++++++++||.+
T Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y  797 (1389)
T TIGR03443       759 FKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSY  797 (1389)
T ss_pred             cccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcc
Confidence                                  01467899999998864

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN02479 acetate-CoA ligase

Probab=99.67  E-value=3.2e-16  Score=110.64  Aligned_cols=90  Identities=26%  Similarity=0.387  Sum_probs=78.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC----
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE----   76 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----   76 (93)
                      +||.+++|++|++++.||.   ||+||++|++|+|.+||+.|.++|.|.++++++.++...++.+++++++.++..    
T Consensus       434 TGDl~~~~~~g~l~~~GR~---~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  510 (567)
T PLN02479        434 SGDLGVKHPDGYIEIKDRS---KDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDE  510 (567)
T ss_pred             cceeEEEcCCccEEEeccc---cceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccch
Confidence            5899999999999999887   999999999999999999999999999999999988777788999998876532    


Q ss_pred             -cCHHHHHHHHcCcCCCC
Q psy12100         77 -LTEQEISSYVEPKKPVL   93 (93)
Q Consensus        77 -~~~~~l~~~~~~~L~~~   93 (93)
                       ...+++.++++++|+.+
T Consensus       511 ~~~~~~l~~~~~~~l~~~  528 (567)
T PLN02479        511 AALAEDIMKFCRERLPAY  528 (567)
T ss_pred             hhhHHHHHHHHHhhcccc
Confidence             23468899999888753

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.67  E-value=5.4e-16  Score=107.23  Aligned_cols=89  Identities=21%  Similarity=0.354  Sum_probs=77.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .||.+++|+||++++.||.  .|++++++|.+|+|.+||+.|.++|.|.+++|++.++...++.+++++++..  ..+.+
T Consensus       354 TGDlg~~~~dg~l~~~GR~--~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~  429 (471)
T PRK07787        354 TGDVAVVDPDGMHRIVGRE--STDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGAD--DVAAD  429 (471)
T ss_pred             cCceEEEcCCCCEEEeCCC--CceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCC--CCCHH
Confidence            4799999999999999873  1789999999999999999999999999999999988877888999988743  35678


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      ++.++++++|+++
T Consensus       430 ~l~~~l~~~l~~~  442 (471)
T PRK07787        430 ELIDFVAQQLSVH  442 (471)
T ss_pred             HHHHHHHhhcccc
Confidence            8999999888753

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.67  E-value=6.4e-16  Score=107.12  Aligned_cols=89  Identities=28%  Similarity=0.366  Sum_probs=80.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .+|.++++++|++++.||.   ||+||++|.+|+|.+||+.+.++++|.++++++.++...++.++++++..++...+..
T Consensus       381 TGDl~~~~~~g~~~~~GR~---~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (504)
T PRK07514        381 TGDLGKIDERGYVHIVGRG---KDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEA  457 (504)
T ss_pred             ecceEEEcCCccEEEeccc---cceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHH
Confidence            3789999999999999887   9999999999999999999999999999999999988778889999998876666788


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      +++++++++|++
T Consensus       458 ~l~~~~~~~l~~  469 (504)
T PRK07514        458 AILAALKGRLAR  469 (504)
T ss_pred             HHHHHHHhhccc
Confidence            899999988765

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.67  E-value=3.2e-16  Score=112.74  Aligned_cols=66  Identities=18%  Similarity=0.066  Sum_probs=59.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEEC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK   72 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   72 (93)
                      +||.|++|+||+++|.||.   ||+||+ +|+||+|.+||++|.+||.|.+|+|+|.+.   ++.++++|+++
T Consensus       497 TGDlg~~d~dG~l~i~GR~---kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~  563 (660)
T PLN02861        497 TGDIGEWQPNGAMKIIDRK---KNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPD  563 (660)
T ss_pred             cCceEEECCCCcEEEEecc---ccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcC
Confidence            5899999999999999887   999997 799999999999999999999999999762   35688888875

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.67  E-value=6.1e-16  Score=108.55  Aligned_cols=87  Identities=21%  Similarity=0.324  Sum_probs=77.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   +|+|+++|++|+|.+||..|.++|+|.++++++.++...++.+++++++.++  .+..
T Consensus       413 TGDl~~~d~~G~l~~~gR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~~~  487 (536)
T PRK10946        413 SGDLVSIDPDGYITVVGRE---KDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LKAV  487 (536)
T ss_pred             cCceEEECCCCcEEEeccc---cceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--CCHH
Confidence            4799999999999999887   9999999999999999999999999999999999988778888999887754  6778


Q ss_pred             HHHHHHcCc-CCC
Q psy12100         81 EISSYVEPK-KPV   92 (93)
Q Consensus        81 ~l~~~~~~~-L~~   92 (93)
                      +++++++++ |+.
T Consensus       488 ~l~~~~~~~~l~~  500 (536)
T PRK10946        488 QLRRFLREQGIAE  500 (536)
T ss_pred             HHHHHHHhCCccc
Confidence            899999875 664

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.66  E-value=2.8e-16  Score=112.70  Aligned_cols=67  Identities=19%  Similarity=0.128  Sum_probs=60.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP   73 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   73 (93)
                      +||.|++|+||+++|.||.   ||+||+ +|+||+|.+||++|.+||.|.+|+|+|.   ..++.++|+|++++
T Consensus       491 TGDlg~~d~dG~l~i~GR~---kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~  558 (651)
T PLN02736        491 TGDIGLWLPGGRLKIIDRK---KNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDP  558 (651)
T ss_pred             ccceEEEcCCCcEEEEEec---hhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCH
Confidence            5899999999999999887   999997 7999999999999999999999999983   34678999999865

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.66  E-value=9.1e-16  Score=108.18  Aligned_cols=89  Identities=25%  Similarity=0.382  Sum_probs=78.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++.|++|++++.||.   ||+||++|++|+|.+||+.|.++|.|.++++++.++...++.+.+++++.+. ..+.+
T Consensus       445 TGD~g~~~~~G~l~i~GR~---~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~  520 (562)
T PRK12492        445 TGDIAVIDPDGFVRIVDRK---KDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-GLSVE  520 (562)
T ss_pred             cCcEEEECCCCeEEEeccc---CCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-CCCHH
Confidence            5899999999999999887   9999999999999999999999999999999999888778888888887543 35678


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       521 ~i~~~~~~~l~~~  533 (562)
T PRK12492        521 ELKAYCKENFTGY  533 (562)
T ss_pred             HHHHHHHHhcccc
Confidence            8999999888753

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.66  E-value=8.9e-16  Score=107.13  Aligned_cols=89  Identities=26%  Similarity=0.359  Sum_probs=80.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .+|.++.+++|++++.||.   +++|+++|.+|+|.+||+.|.++|+|.++++++.+++..++.+++++++.+....+.+
T Consensus       397 TGDl~~~~~~g~~~~~GR~---~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  473 (524)
T PRK06188        397 TGDVAREDEDGFYYIVDRK---KDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAA  473 (524)
T ss_pred             ecceEEEcCCccEEEEecc---ccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHH
Confidence            4788999999999999887   9999999999999999999999999999999999888778889999998876666778


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      +++++++++++.
T Consensus       474 ~l~~~~~~~l~~  485 (524)
T PRK06188        474 ELQAHVKERKGS  485 (524)
T ss_pred             HHHHHHHHhccc
Confidence            899999888765

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.66  E-value=4.2e-16  Score=111.01  Aligned_cols=86  Identities=10%  Similarity=0.069  Sum_probs=69.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhc-CCCcce--EEEEeeeCCCCCceEEEEEEECCCCC-
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ-IAGVAD--VAVVGVPDTLSGEVPKAFVVKKPGVE-   76 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~~-   76 (93)
                      +||.|+.+ +|+++|.||.   ||+||++|+||+|.|||+.|.+ ||.|.+  +++++++++. ++.+++++++.++.. 
T Consensus       480 TGDlg~~~-dG~l~i~GR~---~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~  554 (612)
T PRK12476        480 TGDLGVYL-DGELYITGRI---ADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSR  554 (612)
T ss_pred             ccccceeE-CCEEEEEecc---CcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCccc
Confidence            47888875 9999999888   9999999999999999999985 899998  6778888776 788899998876642 


Q ss_pred             cCHHHHHHHHcCcCC
Q psy12100         77 LTEQEISSYVEPKKP   91 (93)
Q Consensus        77 ~~~~~l~~~~~~~L~   91 (93)
                      .+.++|.++++++|.
T Consensus       555 ~~~~~l~~~~~~~l~  569 (612)
T PRK12476        555 ADPAPAIDAIRAAVS  569 (612)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            456666666665543

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.65  E-value=9e-16  Score=107.87  Aligned_cols=71  Identities=17%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG   74 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~   74 (93)
                      +||.+++|++|++++.||.   ||+||++|++|+|.|||+.|..||+|.+++|++.++...++.++++++..+.
T Consensus       406 TGDlg~~d~~g~l~~~GR~---~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~  476 (540)
T PRK05857        406 TGDLLERREDGFFYIKGRS---SEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAE  476 (540)
T ss_pred             ccceEEEcCCceEEEeccc---cccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCC
Confidence            5899999999999999887   9999999999999999999999999999999999987777778787776543

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.65  E-value=8.3e-16  Score=108.09  Aligned_cols=88  Identities=26%  Similarity=0.382  Sum_probs=76.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.+++|++|++++.||.   +|+|+++|.+|+|.+||+.|..+|+|.++++++.++...++.+.++++.. +...+..
T Consensus       441 TGD~~~~~~~g~l~i~GR~---~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~~~~~  516 (560)
T PRK08751        441 TGDIARMDEQGFVYIVDRK---KDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPALTAE  516 (560)
T ss_pred             ccceEEEcCCceEEEEeec---hhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCCCCHH
Confidence            5799999999999999887   99999999999999999999999999999999999887777777777654 3445678


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      +++++++++|+.
T Consensus       517 ~l~~~~~~~l~~  528 (560)
T PRK08751        517 DVKAHARANLTG  528 (560)
T ss_pred             HHHHHHHHhhhh
Confidence            899999888765

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.65  E-value=1.7e-15  Score=105.57  Aligned_cols=90  Identities=24%  Similarity=0.291  Sum_probs=78.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL---   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---   77 (93)
                      +||.++++++|++++.||.   ||++|++|.+|+|.+||+++.+||.|.++++++.++...++.+++++++.++...   
T Consensus       386 TGD~g~~~~~g~l~~~gR~---~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~  462 (511)
T PRK13391        386 VGDIGYVDEDGYLYLTDRA---AFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPA  462 (511)
T ss_pred             cCCEEEECCCccEEEeccC---CCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccc
Confidence            4789999999999999887   9999999999999999999999999999999999988888888888887654332   


Q ss_pred             CHHHHHHHHcCcCCCC
Q psy12100         78 TEQEISSYVEPKKPVL   93 (93)
Q Consensus        78 ~~~~l~~~~~~~L~~~   93 (93)
                      ..++++++++++|+.+
T Consensus       463 ~~~~l~~~~~~~l~~~  478 (511)
T PRK13391        463 LAAELIAFCRQRLSRQ  478 (511)
T ss_pred             hHHHHHHHHHhhcccC
Confidence            2478999999988753

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.64  E-value=1.7e-15  Score=105.17  Aligned_cols=89  Identities=27%  Similarity=0.359  Sum_probs=77.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCH-
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE-   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-   79 (93)
                      .||.+++|++|++++.||.   ||+||++|.+|+|.+||..|.++|+|.++++++..++..++.+.+++++.++...+. 
T Consensus       373 TGD~~~~~~~g~~~~~GR~---~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  449 (502)
T PRK08276        373 VGDVGYLDEDGYLYLTDRK---SDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDA  449 (502)
T ss_pred             ecceEEEcCCcCEEEeccC---cceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChh
Confidence            4799999999999999887   999999999999999999999999999999999988888889999999876543332 


Q ss_pred             --HHHHHHHcCcCCC
Q psy12100         80 --QEISSYVEPKKPV   92 (93)
Q Consensus        80 --~~l~~~~~~~L~~   92 (93)
                        +++.++++++|+.
T Consensus       450 ~~~~i~~~~~~~l~~  464 (502)
T PRK08276        450 LAAELIAWLRGRLAH  464 (502)
T ss_pred             hHHHHHHHHHhhccC
Confidence              4788888888765

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.64  E-value=3.1e-15  Score=105.05  Aligned_cols=90  Identities=18%  Similarity=0.244  Sum_probs=78.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-CcCH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV-ELTE   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~   79 (93)
                      +||.++.+++|++++.||.   ||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.+++++++.+.. ....
T Consensus       403 TGDl~~~~~~g~~~i~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  479 (542)
T PRK07786        403 SGDLVRQDEEGYVWVVDRK---KDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTL  479 (542)
T ss_pred             ccceEEEcCCceEEEEecc---cceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCH
Confidence            4799999999999999887   99999999999999999999999999999999998877778888888877543 3567


Q ss_pred             HHHHHHHcCcCCCC
Q psy12100         80 QEISSYVEPKKPVL   93 (93)
Q Consensus        80 ~~l~~~~~~~L~~~   93 (93)
                      .++.++++++|+++
T Consensus       480 ~~l~~~l~~~l~~~  493 (542)
T PRK07786        480 EDLAEFLTDRLARY  493 (542)
T ss_pred             HHHHHHHHhhccCC
Confidence            88999999888753

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.64  E-value=3.1e-15  Score=103.65  Aligned_cols=89  Identities=28%  Similarity=0.448  Sum_probs=80.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .+|.+.++.+|++++.||.   +|++|++|.+++|.+||+.+.++|+|.++++++.+++..++.+++++++.++...+..
T Consensus       399 tGD~~~~~~~g~~~~~GR~---~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  475 (521)
T PRK06187        399 TGDVGYIDEDGYLYITDRI---KDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAK  475 (521)
T ss_pred             ccceEEEcCCCCEEEeecc---cceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHH
Confidence            4789999999999999887   9999999999999999999999999999999999888778899999998877667788


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      +++++++++|+.
T Consensus       476 ~l~~~l~~~l~~  487 (521)
T PRK06187        476 ELRAFLRGRLAK  487 (521)
T ss_pred             HHHHHHHHhccC
Confidence            999999888875

>PRK12316 peptide synthase; Provisional

Probab=99.63  E-value=1.7e-15  Score=124.92  Aligned_cols=89  Identities=16%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++++.||++++.||.   ||+||++|+||+|.|||+.|.++|+|.+++|++.++. .++.+++++++.++...+.+
T Consensus      2385 TGDl~~~~~dG~l~~~GR~---d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~~~~ 2460 (5163)
T PRK12316       2385 TGDLARYRADGVVEYLGRI---DHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAEDLLA 2460 (5163)
T ss_pred             cccEEEEcCCCcEEEecCC---CCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCccCHH
Confidence            5899999999999999887   9999999999999999999999999999999988766 67889999998877667789


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++||.+
T Consensus      2461 ~l~~~l~~~Lp~~ 2473 (5163)
T PRK12316       2461 ELRAWLAARLPAY 2473 (5163)
T ss_pred             HHHHHHHhhCchh
Confidence            9999999999864

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.63  E-value=3.2e-15  Score=103.64  Aligned_cols=88  Identities=11%  Similarity=0.023  Sum_probs=72.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeee-CCCCCceEEEEEEECCCCCcC-
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVP-DTLSGEVPKAFVVKKPGVELT-   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~-   78 (93)
                      +||.+++|++ ++++.||.   +|+|+++|.||+|.+||+.+.++|.|.+++++++. .....+.+++++++....... 
T Consensus       378 TGDlg~~~~~-~l~i~GR~---~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~  453 (502)
T TIGR01734       378 TGDAGTITDG-QLFYQGRL---DFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKE  453 (502)
T ss_pred             CCCEEEEECC-EEEEeccc---cCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccc
Confidence            5899999977 99999887   99999999999999999999999999999999976 444567788888876543221 


Q ss_pred             ---HHHHHHHHcCcCCC
Q psy12100         79 ---EQEISSYVEPKKPV   92 (93)
Q Consensus        79 ---~~~l~~~~~~~L~~   92 (93)
                         .++++++++++|++
T Consensus       454 ~~~~~~i~~~~~~~l~~  470 (502)
T TIGR01734       454 FQLTKAIKKELKKSLPA  470 (502)
T ss_pred             hhhHHHHHHHHhhhChh
Confidence               26788888888764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.63  E-value=2.1e-15  Score=106.15  Aligned_cols=82  Identities=18%  Similarity=0.152  Sum_probs=65.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcce------EEEEeeeCCCCCceEEEEEEECCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVAD------VAVVGVPDTLSGEVPKAFVVKKPG   74 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~~~~~   74 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||++|.+||+|.+      +++++.++.  ...++++++..  
T Consensus       414 TGD~g~~d~~G~l~~~GR~---~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~~~--  486 (539)
T PRK06334        414 TGDLGYVDRHGELFLKGRL---SRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTTFP--  486 (539)
T ss_pred             CCCEEEECCCCeEEEEecc---CCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCC--ceEEEEEEecc--
Confidence            4899999999999999887   9999999999999999999999999987      677777643  23444554432  


Q ss_pred             CCcCHHHHHHHHcCc-CC
Q psy12100         75 VELTEQEISSYVEPK-KP   91 (93)
Q Consensus        75 ~~~~~~~l~~~~~~~-L~   91 (93)
                        .+.++++++++++ ++
T Consensus       487 --~~~~~~~~~l~~~~~~  502 (539)
T PRK06334        487 --TSISEVNDILKNSKTS  502 (539)
T ss_pred             --CChHHHHHHHHhcCCc
Confidence              3567888888775 44

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.63  E-value=3.4e-15  Score=105.08  Aligned_cols=88  Identities=31%  Similarity=0.460  Sum_probs=77.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.++++.+|++++.||.   +|+|+++|++|+|.+||+.+.++|+|.++++++.++...++.++++++... ...+.+
T Consensus       439 TGDl~~~~~~g~~~~~GR~---~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~~~~~~  514 (557)
T PRK07059        439 TGDVGVMDERGYTKIVDRK---KDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-PALTEE  514 (557)
T ss_pred             cCcEEEEcCCCcEEEeccc---ccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-CCCCHH
Confidence            5899999999999999887   999999999999999999999999999999999998877888888888654 345678


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      ++++++.++|+.
T Consensus       515 ~l~~~~~~~l~~  526 (557)
T PRK07059        515 DVKAFCKERLTN  526 (557)
T ss_pred             HHHHHHHHhccc
Confidence            899998888765

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.62  E-value=5.1e-16  Score=105.82  Aligned_cols=84  Identities=25%  Similarity=0.376  Sum_probs=76.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .||...+|.+||+.++||.   ||+|+.+|+||..+|||+.|..||.|.+|++++.+++..|++.|++++.++.. ....
T Consensus       418 sGD~V~~~~dGyl~V~GR~---KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~-~~~~  493 (542)
T COG1021         418 SGDLVRRDPDGYLVVEGRV---KDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPP-LRAA  493 (542)
T ss_pred             cCceeEecCCceEEEEeee---hhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCC-CCHH
Confidence            3788899999999999998   99999999999999999999999999999999999999999999999988553 6778


Q ss_pred             HHHHHHcC
Q psy12100         81 EISSYVEP   88 (93)
Q Consensus        81 ~l~~~~~~   88 (93)
                      +|++++.+
T Consensus       494 qlr~~L~~  501 (542)
T COG1021         494 QLRRFLRE  501 (542)
T ss_pred             HHHHHHHH
Confidence            88888765

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.62  E-value=3.9e-15  Score=102.76  Aligned_cols=88  Identities=31%  Similarity=0.457  Sum_probs=76.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++++++|++++.||.   ||++|++|.+|+|.+||+.+.++|+|.++++++.+++..+..++++++..  ...+..
T Consensus       364 tGDl~~~~~~g~l~~~GR~---~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~  438 (483)
T PRK03640        364 TGDIGYLDEEGFLYVLDRR---SDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVTEE  438 (483)
T ss_pred             ccceEEEcCCCCEEEeecc---cCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCCHH
Confidence            4799999999999999887   99999999999999999999999999999999988877777788877754  345678


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       439 ~l~~~~~~~l~~~  451 (483)
T PRK03640        439 ELRHFCEEKLAKY  451 (483)
T ss_pred             HHHHHHHHhccCC
Confidence            8999999888754

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.61  E-value=4.3e-15  Score=112.44  Aligned_cols=90  Identities=8%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeee------CCCCCceEEEEEEECCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVP------DTLSGEVPKAFVVKKPG   74 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~------~~~~~~~~~~~v~~~~~   74 (93)
                      .||.++++++|++++.||.   |++||++|+||+|.|||+.|.++|+|.+++|+++.      ..+....++++++...+
T Consensus       841 TGDl~~~~~~G~l~~~GR~---d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~  917 (1296)
T PRK10252        841 TGDVARWLDDGAVEYLGRS---DDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG  917 (1296)
T ss_pred             cCceEEEcCCCcEEEeccc---CCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCC
Confidence            4899999999999999887   99999999999999999999999999999887653      11122468899988766


Q ss_pred             CCcCHHHHHHHHcCcCCCC
Q psy12100         75 VELTEQEISSYVEPKKPVL   93 (93)
Q Consensus        75 ~~~~~~~l~~~~~~~L~~~   93 (93)
                      ...+..+++++++++||.+
T Consensus       918 ~~~~~~~l~~~l~~~Lp~~  936 (1296)
T PRK10252        918 LPLDTSALQAQLRERLPPH  936 (1296)
T ss_pred             CCCCHHHHHHHHHhhCchh
Confidence            5567889999999998864

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.61  E-value=3e-15  Score=107.93  Aligned_cols=67  Identities=16%  Similarity=0.074  Sum_probs=59.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP   73 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   73 (93)
                      +||.|++|+||+++|.||.   ||+||+ +|+||+|.+||++|.+||.|.+++|+|....   ..++|+|+++.
T Consensus       500 TGDlg~~d~dG~l~i~gR~---kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~  567 (666)
T PLN02614        500 TGDVGEWQPNGSMKIIDRK---KNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQ  567 (666)
T ss_pred             cceEEEEcCCCCEEEEEcc---hhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCH
Confidence            5899999999999999887   999996 7999999999999999999999999997532   24888888753

>PRK12467 peptide synthase; Provisional

Probab=99.61  E-value=3.2e-15  Score=121.77  Aligned_cols=89  Identities=12%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++++||++++.||.   |++||++|+||+|.|||+.|.++|+|.+|+|++... ..++.+++++++........+
T Consensus      3475 TGDl~~~~~dG~l~~~GR~---d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~~~~ 3550 (3956)
T PRK12467       3475 TGDLARYRADGVIEYLGRI---DHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGDWRE 3550 (3956)
T ss_pred             cchhheecCCCcEEEeccc---cceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCcccHH
Confidence            4899999999999999887   999999999999999999999999999999998754 456789999998765556678


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++||.+
T Consensus      3551 ~l~~~l~~~Lp~y 3563 (3956)
T PRK12467       3551 TLRDHLAASLPDY 3563 (3956)
T ss_pred             HHHHHHhccCChh
Confidence            9999999999864

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.61  E-value=4.9e-15  Score=101.05  Aligned_cols=87  Identities=21%  Similarity=0.392  Sum_probs=76.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .+|.+..|.+|++++.||.   +|+||++|.+|+|.+||+.|.++|.|.++++++.++...+..+.+++++.++  .+..
T Consensus       324 TGD~~~~~~dg~~~~~GR~---~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~  398 (436)
T TIGR01923       324 TGDIGELDGEGFLYVLGRR---DDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--ISQA  398 (436)
T ss_pred             ccceEEEcCCCCEEEeccc---cCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--CCHH
Confidence            4789999999999999887   9999999999999999999999999999999998887667788888887753  5677


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      ++.+++++.|+.
T Consensus       399 ~l~~~l~~~l~~  410 (436)
T TIGR01923       399 KLIAYLTEKLAK  410 (436)
T ss_pred             HHHHHHHHhhhC
Confidence            888888888765

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK12316 peptide synthase; Provisional

Probab=99.61  E-value=3.2e-15  Score=123.33  Aligned_cols=86  Identities=14%  Similarity=0.147  Sum_probs=78.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++.|.||++++.||.   ||+||++|+||+|.|||++|.+||+|.+|+|++.+    ++.+++++++.++.....+
T Consensus       890 TGDl~~~~~dG~l~~~GR~---d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~~~~  962 (5163)
T PRK12316        890 TGDLARYRADGVIEYAGRI---DHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDWRE  962 (5163)
T ss_pred             cCccEEECCCCCEEeeccc---CCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCCCHH
Confidence            4899999999999999887   99999999999999999999999999999999885    5679999998776666788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++||.+
T Consensus       963 ~l~~~l~~~Lp~y  975 (5163)
T PRK12316        963 ALKAHLAASLPEY  975 (5163)
T ss_pred             HHHHHHHhhCCCc
Confidence            9999999999864

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.61  E-value=2.9e-15  Score=106.06  Aligned_cols=85  Identities=15%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcc--eEEEEeeeCCCCCceEEEEEEECCCCCcC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVA--DVAVVGVPDTLSGEVPKAFVVKKPGVELT   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   78 (93)
                      +||.+++ ++|++++.||.   ||+||++|++|+|.|||+.|.+||+|.  ++++++++++. +..++++++..++...+
T Consensus       443 TGDlg~~-~~G~l~~~GR~---dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~  517 (579)
T PRK09192        443 TGDLGYL-LDGYLYITGRA---KDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEER  517 (579)
T ss_pred             ccceeeE-ECCEEEEEecc---ccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHH
Confidence            4788999 89999999887   999999999999999999999999998  89999998875 44778887766554445


Q ss_pred             HHHHHHHHcCcC
Q psy12100         79 EQEISSYVEPKK   90 (93)
Q Consensus        79 ~~~l~~~~~~~L   90 (93)
                      .+++.+++++.+
T Consensus       518 ~~~l~~~~~~~l  529 (579)
T PRK09192        518 RGQLIHALAALV  529 (579)
T ss_pred             HHHHHHHHHHHH
Confidence            667777776654

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.61  E-value=8.7e-15  Score=103.05  Aligned_cols=88  Identities=28%  Similarity=0.382  Sum_probs=76.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.++++++|++++.||.   +|+|+++|.+++|.+||+.|.++|+|.++++++.++...++.++++++..+ ...+.+
T Consensus       436 TGDl~~~~~~g~l~i~GR~---~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~~~~  511 (560)
T PRK08974        436 TGDIAVMDEEGFLRIVDRK---KDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSLTEE  511 (560)
T ss_pred             cCCEEEEcCCceEEEEecc---cceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-CCCCHH
Confidence            5789999999999999887   999999999999999999999999999999999998877777777776543 334677


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      ++++++.++|+.
T Consensus       512 ~l~~~l~~~l~~  523 (560)
T PRK08974        512 ELITHCRRHLTG  523 (560)
T ss_pred             HHHHHHHhhccc
Confidence            888888888765

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.61  E-value=5e-15  Score=111.20  Aligned_cols=86  Identities=13%  Similarity=0.152  Sum_probs=73.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|+||++++.||.   ||+||++|+||+|.|||+.+.++|.+.+++|++++++..++.+++++.   ..+.+.+
T Consensus      1014 TGDl~~~d~dG~l~~~GR~---~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~~~~ 1087 (1140)
T PRK06814       1014 TGDIVTIDEEGFITIKGRA---KRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDATRA 1087 (1140)
T ss_pred             cCCEEEECCCCeEEEEecc---cCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCcCHH
Confidence            4899999999999999887   999999999999999999999999999999999998888887766553   2345677


Q ss_pred             HHHHHHcCc-CCC
Q psy12100         81 EISSYVEPK-KPV   92 (93)
Q Consensus        81 ~l~~~~~~~-L~~   92 (93)
                      ++.++++++ |+.
T Consensus      1088 ~l~~~~~~~~l~~ 1100 (1140)
T PRK06814       1088 AFLAHAKAAGASE 1100 (1140)
T ss_pred             HHHHHHHHcCCCc
Confidence            888888764 654

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.59  E-value=1.4e-14  Score=101.70  Aligned_cols=89  Identities=27%  Similarity=0.368  Sum_probs=76.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC-CCCcCH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP-GVELTE   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~   79 (93)
                      .+|.+++|++|++++.||.   +|+|+++|.+|+|.+||+.|.++|+|.++++++.+++..++.+++++++.+ +...+.
T Consensus       414 TGDl~~~~~~g~l~i~GR~---~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  490 (547)
T PRK06087        414 SGDLCRMDEAGYIKITGRK---KDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTL  490 (547)
T ss_pred             cCceEEECCCCCEEEEecc---hhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCH
Confidence            4799999999999999887   999999999999999999999999999999999998888889999999875 334567


Q ss_pred             HHHHHHHc-CcCCC
Q psy12100         80 QEISSYVE-PKKPV   92 (93)
Q Consensus        80 ~~l~~~~~-~~L~~   92 (93)
                      +++.+++. +.|+.
T Consensus       491 ~~~~~~~~~~~l~~  504 (547)
T PRK06087        491 EEVVAFFSRKRVAK  504 (547)
T ss_pred             HHHHHHHHhccccc
Confidence            78888765 45554

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.58  E-value=2.2e-14  Score=99.88  Aligned_cols=89  Identities=28%  Similarity=0.340  Sum_probs=76.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC---c
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE---L   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~   77 (93)
                      .||.++++++|++++.||.   ||+|+++|.+++|.+||+.|.++|+|.++++++.++....+.+.+++++.+...   .
T Consensus       388 TGD~~~~~~~g~~~~~gR~---~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  464 (508)
T TIGR02262       388 SGDKYVRNDDGSYTYAGRT---DDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTA  464 (508)
T ss_pred             ccceEEEcCCccEEEeccc---cceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccc
Confidence            4788999999999999887   999999999999999999999999999999999888777788888888766532   3


Q ss_pred             CHHHHHHHHcCcCCC
Q psy12100         78 TEQEISSYVEPKKPV   92 (93)
Q Consensus        78 ~~~~l~~~~~~~L~~   92 (93)
                      ..+++.++++++|++
T Consensus       465 ~~~~i~~~~~~~l~~  479 (508)
T TIGR02262       465 LETELKEHVKDRLAP  479 (508)
T ss_pred             cHHHHHHHHHHhccc
Confidence            357888899888775

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.57  E-value=2.4e-14  Score=99.11  Aligned_cols=88  Identities=15%  Similarity=0.037  Sum_probs=73.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC-c--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE-L--   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~--   77 (93)
                      +||.+++ .+|++++.||.   ||+|+++|.+++|.+||+.+.++|+|.++++++.++...++.+++++++.++.. .  
T Consensus       380 tGD~~~~-~~g~~~~~GR~---~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  455 (503)
T PRK04813        380 TGDAGYL-EDGLLFYQGRI---DFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREF  455 (503)
T ss_pred             CCceEEe-eCCeEEEeccc---cceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccc
Confidence            4788999 89999999887   999999999999999999999999999999999877766778888888765421 1  


Q ss_pred             -CHHHHHHHHcCcCCC
Q psy12100         78 -TEQEISSYVEPKKPV   92 (93)
Q Consensus        78 -~~~~l~~~~~~~L~~   92 (93)
                       -.++++++++++|+.
T Consensus       456 ~~~~~l~~~~~~~l~~  471 (503)
T PRK04813        456 ELTKAIKKELKERLME  471 (503)
T ss_pred             hhHHHHHHHHHhhCcc
Confidence             124688888877764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.56  E-value=2e-14  Score=107.60  Aligned_cols=86  Identities=15%  Similarity=0.153  Sum_probs=73.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCC--cceEEEEeeeCCCCCceEEEEEEECCCCCcC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAG--VADVAVVGVPDTLSGEVPKAFVVKKPGVELT   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~--v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   78 (93)
                      .||.+++|+||++++.||.   ||+||++|++|+|.|||+.|.+||+  +.++++++++++..++.++++++..   ..+
T Consensus      1023 TGD~~~~~~~g~l~~~gR~---~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~---~~~ 1096 (1146)
T PRK08633       1023 TGDKGHLDEDGFLTITDRY---SRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG---AED 1096 (1146)
T ss_pred             CCCEEEEcCCceEEEEecc---cchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecC---ccC
Confidence            4899999999999999887   9999999999999999999999984  5679999999988888888888752   345


Q ss_pred             HHHHHHHHcC-cCCC
Q psy12100         79 EQEISSYVEP-KKPV   92 (93)
Q Consensus        79 ~~~l~~~~~~-~L~~   92 (93)
                      .+++++++.+ ++++
T Consensus      1097 ~~~l~~~~~~~~l~~ 1111 (1146)
T PRK08633       1097 VEELKRAIKESGLPN 1111 (1146)
T ss_pred             HHHHHHHHHhcCCCc
Confidence            6788888764 4654

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.55  E-value=1.8e-14  Score=101.77  Aligned_cols=69  Identities=22%  Similarity=0.224  Sum_probs=60.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV   75 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   75 (93)
                      +||.+++| +|++++.||.   ||+||++|+||+|.|||+.|.+||.+ +++++++++. .++.+++++++++..
T Consensus       441 TGDl~~~~-~G~l~~~GR~---~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~  509 (578)
T PRK05850        441 TGDLGFIS-EGELFIVGRI---KDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRG  509 (578)
T ss_pred             ccceeeEE-CCEEEEEccc---ccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEecccc
Confidence            47899998 8999999887   99999999999999999999999986 5788888876 678899999887654

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.54  E-value=4.3e-14  Score=102.45  Aligned_cols=67  Identities=15%  Similarity=0.049  Sum_probs=58.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP   73 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   73 (93)
                      +||.|++|+||+++|.||.   ||+||+ +|+||+|.+||++|.+||.|.+++|+|.+..   ..++++|++++
T Consensus       539 TGDig~~d~dG~l~i~gR~---kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~  606 (696)
T PLN02387        539 TGDIGQFHPDGCLEIIDRK---KDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH---SYCVALVVPSQ  606 (696)
T ss_pred             cCceEEECCCCcEEEEEcc---cceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEEeCH
Confidence            5899999999999999887   999998 6999999999999999999999999986532   35778888753

>PRK05691 peptide synthase; Validated

Probab=99.53  E-value=6.5e-14  Score=114.87  Aligned_cols=89  Identities=15%  Similarity=0.225  Sum_probs=78.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++.++||++++.||.   |++||++|++|+|.|||+.|.++|+|.+++|++.... .+..++++++...+...+.+
T Consensus      1509 TGDl~~~~~dG~l~~~GR~---d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~~~~ 1584 (4334)
T PRK05691       1509 TGDRARWNADGALEYLGRL---DQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEAEAE 1584 (4334)
T ss_pred             ccceEEECCCCCEEEeccc---CcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCCCHH
Confidence            5899999999999999887   9999999999999999999999999999999866554 45778899888766666778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++||.+
T Consensus      1585 ~l~~~l~~~Lp~y 1597 (4334)
T PRK05691       1585 RLKAALAAELPEY 1597 (4334)
T ss_pred             HHHHHHHHhCccc
Confidence            9999999999864

>PRK12467 peptide synthase; Provisional

Probab=99.53  E-value=5.8e-14  Score=114.67  Aligned_cols=89  Identities=12%  Similarity=0.134  Sum_probs=75.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL---   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---   77 (93)
                      +||.++.+.||++++.||.   ||+||++|++|+|.|||+.|.++|+|.+|+|++.+ ...+..++++++.......   
T Consensus      1958 TGDl~~~~~dG~l~~~GR~---D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~~~ 2033 (3956)
T PRK12467       1958 TGDLARYRADGVIEYLGRI---DHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVDDD 2033 (3956)
T ss_pred             ccceEEECCCCCEEEeccc---CceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCccccccc
Confidence            4899999999999999887   99999999999999999999999999999999886 3456788999987644221   


Q ss_pred             -----CHHHHHHHHcCcCCCC
Q psy12100         78 -----TEQEISSYVEPKKPVL   93 (93)
Q Consensus        78 -----~~~~l~~~~~~~L~~~   93 (93)
                           ...+++++++++||.+
T Consensus      2034 ~~~~~~~~~l~~~l~~~Lp~y 2054 (3956)
T PRK12467       2034 EAQVALRAILKNHLKASLPEY 2054 (3956)
T ss_pred             ccccccHHHHHHHHHhhCchh
Confidence                 3468999999988864

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.52  E-value=6.9e-14  Score=100.89  Aligned_cols=67  Identities=19%  Similarity=0.078  Sum_probs=59.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP   73 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   73 (93)
                      +||.+++|++|+++|+||.   ||+||+ +|++|+|.+||+.+.++|.|.+++|+|..   .+..++|+|++++
T Consensus       497 TGDig~~d~dG~l~i~gR~---kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~  564 (660)
T PLN02430        497 TGDIGEILPNGVLKIIDRK---KNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNE  564 (660)
T ss_pred             ccceEEECCCCcEEEEEcc---cccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCH
Confidence            4899999999999999887   999997 79999999999999999999999999832   3467889998764

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.52  E-value=6.4e-14  Score=102.43  Aligned_cols=67  Identities=12%  Similarity=0.066  Sum_probs=58.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP   73 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   73 (93)
                      +||.+.+|++|+++|+||.   ||+||+ +|+||+|.+||+++.+||.|.+|+|+|...   ...++|+|+++.
T Consensus       574 TGDig~~d~dG~l~i~gR~---kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~---~~~~~Alvv~d~  641 (746)
T PTZ00342        574 TGDIVQINKNGSLTFLDRS---KGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDS---MDGPLAIISVDK  641 (746)
T ss_pred             CCcEEEECCCCeEEEEccC---CCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCC---ccccEEEEECCH
Confidence            5899999999999999887   999995 899999999999999999999999998632   235788888653

>PRK05691 peptide synthase; Validated

Probab=99.51  E-value=1.1e-13  Score=113.63  Aligned_cols=89  Identities=11%  Similarity=0.186  Sum_probs=75.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-----
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV-----   75 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-----   75 (93)
                      +||.++.+.||++++.||.   ||+||++|++|+|.|||+.|.++|+|.+|+|++...+ .+..++++++.....     
T Consensus      2572 TGDl~~~~~dG~l~~~GR~---d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V~~~~~~-~~~~lva~vv~~~~~~~~~~ 2647 (4334)
T PRK05691       2572 TGDLVRLRADGLVEYVGRI---DHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDTP-SGKQLAGYLVSAVAGQDDEA 2647 (4334)
T ss_pred             ccceEEEcCCCCEEEeecc---cCeEEeeeEEechHHHHHHHHhCCCcceEEEEEeeCC-CCcEEEEEEEeccccccccc
Confidence            5899999999999999887   9999999999999999999999999999999988543 567788888864321     


Q ss_pred             -CcCHHHHHHHHcCcCCCC
Q psy12100         76 -ELTEQEISSYVEPKKPVL   93 (93)
Q Consensus        76 -~~~~~~l~~~~~~~L~~~   93 (93)
                       ....++++++++++||.+
T Consensus      2648 ~~~~~~~l~~~l~~~Lp~y 2666 (4334)
T PRK05691       2648 QAALREALKAHLKQQLPDY 2666 (4334)
T ss_pred             ccccHHHHHHHHHhhCccc
Confidence             223578999999999864

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.43  E-value=7.2e-13  Score=93.05  Aligned_cols=69  Identities=19%  Similarity=0.124  Sum_probs=56.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeC--CCCCceEEEEEEEC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPD--TLSGEVPKAFVVKK   72 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~--~~~~~~~~~~v~~~   72 (93)
                      ++|.++.|++|++++.||.   ||+||++|.+|+|.+||+.|.++|+|.+++++++..  ...++..++++...
T Consensus       418 TGDl~~~~~~g~l~~~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~  488 (545)
T PRK07768        418 TGDLGYLTEEGEVVVCGRV---KDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESN  488 (545)
T ss_pred             ccceEEEecCCEEEEEccc---cceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEec
Confidence            4789999999999999887   999999999999999999999999999988777653  33345555555444

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.40  E-value=1.5e-13  Score=98.08  Aligned_cols=84  Identities=12%  Similarity=0.064  Sum_probs=64.4

Q ss_pred             Cccccee----ccCCeEEEeeeeccccceeec-CCeeec--hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100          1 MEEEKAL----SVAPYKKLAGGVKFLETIPRN-PAGKVS--PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP   73 (93)
Q Consensus         1 ~~~~~~~----d~~g~~~~~GR~gR~~d~I~~-~G~~v~--p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   73 (93)
                      +||.+++    |++|+++|.||.   ||+||+ +|++++  |.|+|..+.+||.|.+++|+|.+++    .+.++|++++
T Consensus       444 TGDlg~~~~~~d~~g~l~i~GR~---~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~  516 (614)
T PRK08180        444 SGDAVRFVDPADPERGLMFDGRI---AEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNL  516 (614)
T ss_pred             ccceEEecCCcCCCCceEEecch---hhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCH
Confidence            5899998    568999999887   888885 798666  8899999999999999999998765    4678888765


Q ss_pred             CC---------------CcCHHHHHHHHcCcCC
Q psy12100         74 GV---------------ELTEQEISSYVEPKKP   91 (93)
Q Consensus        74 ~~---------------~~~~~~l~~~~~~~L~   91 (93)
                      +.               ..+.++|++++++.|+
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  549 (614)
T PRK08180        517 DACRRLAGLLADASLAEVLAHPAVRAAFRERLA  549 (614)
T ss_pred             HHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHH
Confidence            41               1233567777766543

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.38  E-value=2e-12  Score=93.87  Aligned_cols=66  Identities=15%  Similarity=0.137  Sum_probs=55.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceee-cCCeeechHHHHHHhhcCCCcceE--EEEeeeCCCCCceEEEEEEEC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPR-NPAGKVSPTELENIIMQIAGVADV--AVVGVPDTLSGEVPKAFVVKK   72 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~-~~G~~v~p~eiE~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~   72 (93)
                      +||.|++|+||+++|.||.   ||+|| .+|++|+|.+||+.+.+||.|.++  ++++.++   ...++++++++
T Consensus       540 TGDig~~d~dG~l~i~GR~---kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~  608 (700)
T PTZ00216        540 TGDVGSIAANGTLRIIGRV---KALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTD  608 (700)
T ss_pred             ccceEEEcCCCcEEEEEeh---HhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecC
Confidence            5899999999999999887   99998 799999999999999999999863  4443322   25678888865

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.31  E-value=1.5e-11  Score=84.54  Aligned_cols=88  Identities=15%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             CcccceeccC-C-----eEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100          1 MEEEKALSVA-P-----YKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG   74 (93)
Q Consensus         1 ~~~~~~~d~~-g-----~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~   74 (93)
                      ++|.++.+++ |     ++++.||.   +|+|+++|.||+|.+||+.|.++|+|...+.+........+.+.+.++..++
T Consensus       293 TGDl~~~~~~~Gr~~~~~~~i~GR~---~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~  369 (422)
T TIGR02155       293 TRDLTRLLPGTARTMRRMDRITGRS---DDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPE  369 (422)
T ss_pred             cCcEEEEECCCCCcccccccccCcc---CCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecC
Confidence            4788888775 4     56787776   9999999999999999999999999986676666665555677777776543


Q ss_pred             CCc-C--------HHHHHHHHcCcCC
Q psy12100         75 VEL-T--------EQEISSYVEPKKP   91 (93)
Q Consensus        75 ~~~-~--------~~~l~~~~~~~L~   91 (93)
                      ... .        .++|++.+++++.
T Consensus       370 ~~~~~~~~~~~~~~~~i~~~~~~~~~  395 (422)
T TIGR02155       370 SYTLRLHEQASLLAGEIQHTIKQEVG  395 (422)
T ss_pred             cccccchHHHHHHHHHHHHHHHhccC
Confidence            211 1        3567777776654

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1179|consensus

Probab=99.27  E-value=3.2e-11  Score=85.22  Aligned_cols=90  Identities=20%  Similarity=0.175  Sum_probs=77.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCC-CceEEEEEEECCCCCcCH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLS-GEVPKAFVVKKPGVELTE   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~-~~~~~~~v~~~~~~~~~~   79 (93)
                      .||.=..|+.||+||.-|   +.|.+.++|+||+..|||+.|.....+.++.|+|+.-+.. |..-+|.|++.+....+.
T Consensus       492 tGDlLv~D~~GylYF~DR---tGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~  568 (649)
T KOG1179|consen  492 TGDLLVADELGYLYFKDR---TGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDL  568 (649)
T ss_pred             eCcEEEEecCCcEEEecc---CCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccchH
Confidence            367788999999999855   5999999999999999999999999999999999876643 344566677788888899


Q ss_pred             HHHHHHHcCcCCCC
Q psy12100         80 QEISSYVEPKKPVL   93 (93)
Q Consensus        80 ~~l~~~~~~~L~~~   93 (93)
                      +.+-+++++.||++
T Consensus       569 ~~l~~~l~~~LP~Y  582 (649)
T KOG1179|consen  569 EKLYQHLRENLPSY  582 (649)
T ss_pred             HHHHHHHHhhCccc
Confidence            99999999999975

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.26  E-value=1.4e-11  Score=88.48  Aligned_cols=66  Identities=17%  Similarity=0.270  Sum_probs=58.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP   73 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   73 (93)
                      +||.|.+|++|+|+++||.   ||+||. +|+||.|+.||+.+.++|.|++.+|++ ...   ..+.++|+++.
T Consensus       453 TGDlg~~d~~g~L~i~gRk---K~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k---~~~~AlIvp~~  519 (613)
T COG1022         453 TGDLGELDEDGYLVITGRK---KELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDK---KFLVALIVPDF  519 (613)
T ss_pred             cCceeEEcCCCcEEEeecc---cceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCC---cceEEEEeCCH
Confidence            4899999999999999887   999998 999999999999999999999999998 322   35788888753

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.19  E-value=1.9e-11  Score=82.66  Aligned_cols=50  Identities=12%  Similarity=0.165  Sum_probs=46.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEE
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAV   53 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v   53 (93)
                      ++|.+++|++|++++.||.   ||+|+++|++++|.+||+.+.++|.|.+++|
T Consensus       359 TGDl~~~d~~g~~~~~gR~---~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       359 TGDLVRYLPDGNLEFLGRI---DDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             CCceEEEcCCCCEEEeecc---CCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            5799999999999999887   9999999999999999999999999998764

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.16  E-value=4.3e-11  Score=85.77  Aligned_cols=57  Identities=14%  Similarity=0.077  Sum_probs=48.9

Q ss_pred             Cccccee-c---cCCeEEEeeeeccccceeec-CCeeechHHHH--HHhhcCCCcceEEEEeeeCCC
Q psy12100          1 MEEEKAL-S---VAPYKKLAGGVKFLETIPRN-PAGKVSPTELE--NIIMQIAGVADVAVVGVPDTL   60 (93)
Q Consensus         1 ~~~~~~~-d---~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE--~~l~~~~~v~~~~v~~~~~~~   60 (93)
                      +||.+++ |   ++|+++|.||.   ||+||+ +|+||+|.+||  .++.+||.|.+++|+|.+++.
T Consensus       456 TGDlg~~~d~~~~~g~l~i~GR~---~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~  519 (624)
T PRK12582        456 LGDAARFVDPDDPEKGLIFDGRV---AEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF  519 (624)
T ss_pred             ccceEEecCCcCCCCceEEeccc---hhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCc
Confidence            4899998 4   46999999887   999996 79999999885  678899999999999987654

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.13  E-value=1.3e-10  Score=62.48  Aligned_cols=51  Identities=47%  Similarity=0.608  Sum_probs=45.6

Q ss_pred             HHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcCCCC
Q psy12100         37 ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPVL   93 (93)
Q Consensus        37 eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L~~~   93 (93)
                      |||++|.+||+|.+|+|++.+++.+++.+++++++      +.++|+++++++|+++
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~   51 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPY   51 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GG
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCc
Confidence            79999999999999999999998888999999998      4489999999998864

...

>PTZ00297 pantothenate kinase; Provisional

Probab=98.87  E-value=1.1e-08  Score=79.33  Aligned_cols=59  Identities=24%  Similarity=0.110  Sum_probs=51.8

Q ss_pred             eccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEEC
Q psy12100          7 LSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK   72 (93)
Q Consensus         7 ~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   72 (93)
                      .+.||+|+|+||.   ||+||. +|++|+|+.||+.+.++|.|.+++|+|-...    .++|+|+++
T Consensus       846 W~~dG~L~IidRk---Kdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd  905 (1452)
T PTZ00297        846 WKRDRTLRLLGPP---LGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPN  905 (1452)
T ss_pred             CccCCeEEEEecc---ccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeC
Confidence            4578999999877   999998 8999999999999999999999999986544    278888875

>KOG1256|consensus

Probab=98.85  E-value=8e-09  Score=74.80  Aligned_cols=68  Identities=21%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG   74 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~   74 (93)
                      .||.|.+|.+|.++|.||.   |++||. .|++|.|+.||++....+-|.+.+|.|-+..   ..++++|++++.
T Consensus       531 TGDiG~~~p~G~l~IidRk---K~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~~LvaiVvpd~e  599 (691)
T KOG1256|consen  531 TGDIGEWDPNGTLKIIDRK---KNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---SFLVAIVVPDPE  599 (691)
T ss_pred             cccceeECCCccEEEEecc---cceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch---hcEEEEEecChh
Confidence            4899999999999999777   999999 8999999999999999999999999876543   458888888654

>KOG1178|consensus

Probab=98.70  E-value=8e-08  Score=72.46  Aligned_cols=89  Identities=13%  Similarity=0.228  Sum_probs=76.6

Q ss_pred             cccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC-cCHH
Q psy12100          2 EEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE-LTEQ   80 (93)
Q Consensus         2 ~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~   80 (93)
                      +|-+..-.+|.+.+.||.   |++||.+|.++...+|++.+..+|.|.++......+...++.+.+|++...... ....
T Consensus       459 gD~gr~l~ng~l~~~GR~---d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~~  535 (1032)
T KOG1178|consen  459 GDNGRSLKNGGLEISGRA---DRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVLIR  535 (1032)
T ss_pred             cccceeecCCCEEEEEec---cceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchhHH
Confidence            566766668889998888   889999999999999999999999999999999988877899999999876643 3457


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      .+++++...|+.+
T Consensus       536 ~i~~~l~~~La~y  548 (1032)
T KOG1178|consen  536 DIRNYLKKELASY  548 (1032)
T ss_pred             HHHHhhcccccce
Confidence            8999999988764

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=98.48  E-value=5.9e-07  Score=50.68  Aligned_cols=47  Identities=17%  Similarity=0.200  Sum_probs=38.4

Q ss_pred             CeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC
Q psy12100         30 AGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE   76 (93)
Q Consensus        30 G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   76 (93)
                      |.||||.+||++|.++|++...+.+.+......+.+.+.+.+.++..
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~   47 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS   47 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC
Confidence            88999999999999999999777776766666788888888887653

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=98.47  E-value=1e-06  Score=61.48  Aligned_cols=61  Identities=3%  Similarity=-0.095  Sum_probs=41.6

Q ss_pred             EEEeeeeccccceeecCCeeechHHHHHHhhc---CCCcceEEEEeeeCCC-CCceEEEEEEECCC
Q psy12100         13 KKLAGGVKFLETIPRNPAGKVSPTELENIIMQ---IAGVADVAVVGVPDTL-SGEVPKAFVVKKPG   74 (93)
Q Consensus        13 ~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~---~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~   74 (93)
                      ..+. ..||+|||++++|.||+|.+||++|.+   ++++...+-+.+.... ....+.+.+...+.
T Consensus       321 ~r~~-~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~  385 (445)
T TIGR03335       321 MRIL-NPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECEDK  385 (445)
T ss_pred             ceeC-CCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEecCc
Confidence            4443 458889999999999999999999999   4666544544443332 23355555666544

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1180|consensus

Probab=98.42  E-value=5.4e-07  Score=64.29  Aligned_cols=68  Identities=13%  Similarity=0.101  Sum_probs=59.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG   74 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~   74 (93)
                      +||.|-+..||.|.|.   +|.||++|. +|+.|+..-+|.++.+.|.|...||++-+..   ..++++|++++.
T Consensus       519 TGDIGe~~pdG~LkII---DRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~---s~~VaiVVPn~~  587 (678)
T KOG1180|consen  519 TGDIGEFHPDGCLKII---DRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK---SKPVAIVVPNQK  587 (678)
T ss_pred             ccccceecCCCcEEEe---echhhhhhhcccceeehHHHHHHHhcCcchhheEEeccccc---ceeEEEEcCCch
Confidence            4799999999999997   566999998 9999999999999999999999999876543   468999998753

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=98.22  E-value=8.2e-06  Score=57.03  Aligned_cols=55  Identities=13%  Similarity=0.041  Sum_probs=44.0

Q ss_pred             ccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100         20 KFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG   74 (93)
Q Consensus        20 gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~   74 (93)
                      ||.+||+++.|.+|+|.+||..|.+.+.+..-+.+-+..++....+.+-|++.++
T Consensus       331 GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~  385 (438)
T COG1541         331 GRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE  385 (438)
T ss_pred             cccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence            5559999999999999999999999999985555444445556778888888754

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.32  E-value=0.00032  Score=50.64  Aligned_cols=43  Identities=7%  Similarity=-0.002  Sum_probs=39.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIA   46 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~   46 (93)
                      .+|.+....+|.+.+.||.   |+++|++|++|.+.|||..+.++|
T Consensus       600 tgD~~r~~~dg~~e~lgr~---D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         600 TGDLARPLADGALEYLGRK---DSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             CCCeeeECCCCeEEEeccc---cceeEeceEecCcHHHHHHHhcCC
Confidence            3688888999999999887   999999999999999999998875

>KOG3628|consensus

Probab=95.01  E-value=0.062  Score=42.05  Aligned_cols=42  Identities=12%  Similarity=0.174  Sum_probs=36.4

Q ss_pred             eEEEeeeeccccceeecCCeeechHHHHHHhh-cCCCcceEEEEee
Q psy12100         12 YKKLAGGVKFLETIPRNPAGKVSPTELENIIM-QIAGVADVAVVGV   56 (93)
Q Consensus        12 ~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~   56 (93)
                      -||+.|-+   ++.+-++|.+.+|.+||..+. .||.|..|+++-.
T Consensus      1244 ~LyVlG~i---~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~ 1286 (1363)
T KOG3628|consen 1244 LLYVLGAI---DETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA 1286 (1363)
T ss_pred             eEEEeecc---cceeeecCcccCcchHHHHHHHhcccccceeeEee
Confidence            57887777   999999999999999999775 5999999998854

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=92.82  E-value=0.44  Score=34.56  Aligned_cols=75  Identities=12%  Similarity=0.093  Sum_probs=45.0

Q ss_pred             eEEEeeeeccccceeecCCeeechHHHHHHhhcC---CC--cceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHH
Q psy12100         12 YKKLAGGVKFLETIPRNPAGKVSPTELENIIMQI---AG--VADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV   86 (93)
Q Consensus        12 ~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~---~~--v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   86 (93)
                      .+.|.||.   +.++++.|++++..++++++.+.   .+  +.+-++.+............++.+... ..+.+.+.+.+
T Consensus       388 ~i~F~~R~---~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~l  463 (528)
T PF03321_consen  388 RIEFVGRR---GQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKAL  463 (528)
T ss_dssp             EEEEEEET---TEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHH
T ss_pred             EEEEeccC---CceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHH
Confidence            57787776   88999999999999999998764   33  345555544322233456677777644 22344555555


Q ss_pred             cCcC
Q psy12100         87 EPKK   90 (93)
Q Consensus        87 ~~~L   90 (93)
                      .+.|
T Consensus       464 D~~L  467 (528)
T PF03321_consen  464 DESL  467 (528)
T ss_dssp             HHCS
T ss_pred             HHHh
Confidence            5555

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=90.81  E-value=0.71  Score=32.75  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=25.5

Q ss_pred             eccccceeec---CC--eeechHHHHHHh-hcCCCcceEEEE
Q psy12100         19 VKFLETIPRN---PA--GKVSPTELENII-MQIAGVADVAVV   54 (93)
Q Consensus        19 ~gR~~d~I~~---~G--~~v~p~eiE~~l-~~~~~v~~~~v~   54 (93)
                      .||.+|++++   +|  .+++|..++..+ ...+++.+.-++
T Consensus       323 ~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~  364 (430)
T TIGR02304       323 EGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVL  364 (430)
T ss_pred             cCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEE
Confidence            4666999985   44  456999999874 457888765444

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=81.92  E-value=5.3  Score=20.45  Aligned_cols=46  Identities=13%  Similarity=0.099  Sum_probs=29.9

Q ss_pred             echHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcC
Q psy12100         33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEP   88 (93)
Q Consensus        33 v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~   88 (93)
                      -...++.+.|.++|+|.+|..+.-.     .-..+.+...     +..++.+++.+
T Consensus        10 ~~~~~~~~~l~~~p~V~~~~~vtG~-----~d~~~~v~~~-----d~~~l~~~i~~   55 (74)
T PF01037_consen   10 DAYDEFAEALAEIPEVVECYSVTGE-----YDLILKVRAR-----DMEELEEFIRE   55 (74)
T ss_dssp             THHHHHHHHHHTSTTEEEEEEESSS-----SSEEEEEEES-----SHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCCEEEEEEEeCC-----CCEEEEEEEC-----CHHHHHHHHHH
Confidence            4567888999999999998877432     2244555443     45556665444

One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-04
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-04
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-04
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-04
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		4e-04
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-04
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-04
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-04

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V+P ELE+I++Q            PD  +GE+P A VV + G  +T
Sbjct: 440 VDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 499
Query: 79  EQEISSYV 86
           E+EI  YV
Sbjct: 500 EKEIVDYV 507

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V+P ELE+I++Q            PD  +GE+P A VV + G  +T
Sbjct: 435 VDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 494
Query: 79  EQEISSYV 86
           E+EI  YV
Sbjct: 495 EKEIVDYV 502

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V+P ELE+I++Q            PD  +GE+P A VV + G  +T
Sbjct: 440 VDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 499
Query: 79  EQEISSYV 86
           E+EI  YV
Sbjct: 500 EKEIVDYV 507

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V+P ELE+I++Q            PD  +GE+P A VV + G  +T
Sbjct: 435 VDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 494
Query: 79  EQEISSYV 86
           E+EI  YV
Sbjct: 495 EKEIVDYV 502

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V P ELE+I++Q            PD  +GE+P A VV + G  +T
Sbjct: 470 VDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMT 529
Query: 79  EQEISSYV 86
           EQE+  YV
Sbjct: 530 EQEVMDYV 537

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V P ELE++++Q            PD ++GE+P A VV + G  +T
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496
Query: 79  EQEISSYV 86
           E+E+  YV
Sbjct: 497 EKEVMDYV 504

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V P ELE++++Q            PD ++GE+P A VV + G  +T
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496
Query: 79  EQEISSYV 86
           E+E+  YV
Sbjct: 497 EKEVMDYV 504

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 19  VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
           V  L+++ +    +V P ELE++++Q            PD ++GE+P A VV + G  +T
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496
Query: 79  EQEISSYV 86
           E+E+  YV
Sbjct: 497 EKEVMDYV 504

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-20
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	3e-06
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-20
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	3e-07
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-20
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	4e-07
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	4e-20
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	4e-05
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-18
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	7e-18
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-17
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-16
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-16
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	7e-16
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-15
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-15
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-14
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-14
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-14
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-12
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	4e-12
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-12
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	1e-05
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-05

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 83.9 bits (208), Expect = 1e-20
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           V+P ELE +++    + DVAVV + +  +GEVP AFVVK    EL+E ++  +V  +
Sbjct: 491 VAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQ 547

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 9   VAPYKKLAGGVKFLETIPRNPAGKV 33
           V  YK++   V F E+IP+ P+GK+
Sbjct: 548 VVFYKRI-NKVFFTESIPKAPSGKI 571

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 83.4 bits (207), Expect = 1e-20
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
           V+P ELE+I++Q   + D  V G+PD  +GE+P A VV + G  +TE+EI  YV  + 
Sbjct: 449 VAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 506

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 9   VAPYKKLAGGVKFLETIPRNPAGKV 33
           V   KKL GGV F++ +P+   GK+
Sbjct: 506 VTTAKKLRGGVVFVDEVPKGLTGKL 530

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 83.4 bits (207), Expect = 1e-20
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
           V P ELE++++Q   + D  V GVPD ++GE+P A VV + G  +TE+E+  YV  + 
Sbjct: 451 VPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQV 508

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 9   VAPYKKLAGGVKFLETIPRNPAGKV 33
           V+  K+L GGV+F++ +P+   GK+
Sbjct: 508 VSNAKRLRGGVRFVDEVPKGLTGKI 532

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 81.8 bits (203), Expect = 4e-20
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           V+P ELE +++    ++D AVVG+ D  +GEVP AFVVK    + TE EI  Y+  +
Sbjct: 444 VAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQ 500

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 9   VAPYKKLAGGVKFLETIPRNPAGKV 33
           V  YK++   V F+E IP+ P+GK+
Sbjct: 501 VIFYKRI-KRVFFIEAIPKAPSGKI 524

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 76.9 bits (190), Expect = 3e-18
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV--ELTEQEISSYVEPK 89
            ++P ELE ++M+   V DVAV+G PD  +GEVPKAF+V KP    ++ E++I  +V  +
Sbjct: 448 TIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRER 507

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 75.7 bits (187), Expect = 7e-18
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           V P E+E  + Q   +AD  V+GVPD    E  KA  V KPG  +    ++ +V
Sbjct: 410 VYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFV 463

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 74.5 bits (184), Expect = 1e-17
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
            V P E+E+ I  + GV + AV+GVP    GE   A VV+  G  + E ++   +
Sbjct: 408 NVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGL 462

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 71.8 bits (177), Expect = 2e-16
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           V P E+E++I+ + GV++VAV+G+PD   GE+  A VV     E++EQ+I  Y 
Sbjct: 423 VYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEYC 475

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           + P+E+E ++    GV +V V+G+ D   G+   A VV + G  L+   + ++ 
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFC 465

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 69.9 bits (172), Expect = 7e-16
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           + P ++E +  Q  G++D   VG PD   G+VPK + V +  +  ++ ++ +Y+
Sbjct: 408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI--SKAQLIAYL 459

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 69.1 bits (170), Expect = 1e-15
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
           +S  +LEN +M    V + AVV +P     E P A VV +      E+     ++  
Sbjct: 445 ISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG 501

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV-KKPGVELTEQEISSYV 86
           K+   E+EN +++   V + AV G PD   GE   A++V   P        ++ +V
Sbjct: 415 KIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHV 470

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           K++  E+EN++++   V   A+V + D L GE   A++V K    L   ++  +
Sbjct: 443 KIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP--LRAVQVRRF 494

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 66.0 bits (162), Expect = 2e-14
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
           KV+  E+EN ++    V D A+V +PD   GE    F++ +        E+ ++
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAF 491

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 66.0 bits (162), Expect = 2e-14
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
           K++  E+E +I+    V   A+V + D   GE   AF+V +             +E
Sbjct: 448 KIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLME 503

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 33  VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQE 81
           + P+E+EN +M+   V + AV+  PD + GEV KAFVV        + E
Sbjct: 466 IGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPE 514

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 59.1 bits (144), Expect = 4e-12
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---ELTEQEISSYV 86
            VSP E+E +++Q   V + AVVGV         +AFVV K      E+  +E+ ++V
Sbjct: 438 YVSPVEVEMVLVQHDAVLEAAVVGVDHG-GLVKTRAFVVLKREFAPSEILAEELKAFV 494

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 58.7 bits (143), Expect = 6e-12
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ---EISSYV 86
           KV P E+E+ ++Q   V + A+ GVPD + G+V KA +V       ++    E+  +V
Sbjct: 484 KVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHV 541

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 27/54 (50%)

Query: 37  ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
           E+E  I++   VA+ AVVG  D L+G+   AFVV K     +        + KK
Sbjct: 540 EIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKK 593

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 36  TELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE---QEISSYV 86
            E+E+ ++    +A+ AVVG+P  + G+   A+V    G E +     E+ ++V
Sbjct: 530 AEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWV 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.86
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.85
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.85
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.84
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.83
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.83
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.83
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.83
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.82
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.81
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.81
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.8
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.8
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.79
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.79
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.79
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.78
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.78
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.78
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.78
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.78
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.76
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.76
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.75
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.75
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.74
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.72
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.71
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.71
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.7
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.69
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.67
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.67
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.65
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.64
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.58
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	96.17
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	96.01
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	94.37
2cvi_A	83	75AA long hypothetical regulatory protein ASNC; st	90.65
2djw_A	92	Probable transcriptional regulator, ASNC family; s	88.58
2zbc_A	83	83AA long hypothetical transcriptional regulator;	84.61

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.86  E-value=3.8e-21  Score=132.82  Aligned_cols=90  Identities=19%  Similarity=0.359  Sum_probs=83.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|+||++++.||.   ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.++++|+++++...+.+
T Consensus       383 TGDlg~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~  459 (504)
T 1t5h_X          383 TSDVAVWTPEGTVRILGRV---DDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSAD  459 (504)
T ss_dssp             EEEEEEECTTSCEEEEEEG---GGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHH
T ss_pred             cCcEEEECCCceEEEeCcc---cCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHH
Confidence            4899999999999999888   9999999999999999999999999999999999998888999999999887777889


Q ss_pred             HHHHHHcC-cCCCC
Q psy12100         81 EISSYVEP-KKPVL   93 (93)
Q Consensus        81 ~l~~~~~~-~L~~~   93 (93)
                      ++++++++ +|+.+
T Consensus       460 ~l~~~~~~~~L~~~  473 (504)
T 1t5h_X          460 ALDTFCRSSELADF  473 (504)
T ss_dssp             HHHHHHHTSSCCGG
T ss_pred             HHHHHHhhccCccc
Confidence            99999998 88753

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.85  E-value=5.6e-21  Score=132.84  Aligned_cols=90  Identities=28%  Similarity=0.391  Sum_probs=84.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|+||++++.||.   ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++..++...+.+
T Consensus       415 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~  491 (536)
T 3ni2_A          415 TGDIGYIDDDDELFIVDRL---KELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATED  491 (536)
T ss_dssp             EEEEEEECTTSCEEEEEEC---SCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             cccEEEEcCCceEEEEecc---cceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHH
Confidence            4899999999999999888   9999999999999999999999999999999999998888999999999888778889


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       492 ~l~~~l~~~l~~~  504 (536)
T 3ni2_A          492 EIKQYISKQVIFY  504 (536)
T ss_dssp             HHHHHHHTTSCGG
T ss_pred             HHHHHHHHhccCC
Confidence            9999999998853

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.85  E-value=6e-21  Score=131.95  Aligned_cols=90  Identities=23%  Similarity=0.321  Sum_probs=84.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.+||+|.+++|++++++..++.+++++++.++...+.+
T Consensus       380 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~  456 (503)
T 4fuq_A          380 TGDLGKIDERGYVHILGRG---KDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEA  456 (503)
T ss_dssp             EEEEEEECTTCEEEECCSS---TTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             cceeEEEcCCCcEEEEecC---CCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHH
Confidence            4899999999999999887   9999999999999999999999999999999999999888999999999888788899


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       457 ~l~~~l~~~L~~~  469 (503)
T 4fuq_A          457 QVLHGLDGQLAKF  469 (503)
T ss_dssp             HHHHHHBTTBCGG
T ss_pred             HHHHHHHhhcccC
Confidence            9999999998863

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.84  E-value=1.1e-20  Score=131.81  Aligned_cols=89  Identities=27%  Similarity=0.442  Sum_probs=82.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.++++++++++...+.+
T Consensus       422 TGDl~~~~~dG~l~~~GR~---~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~  498 (548)
T 2d1s_A          422 TGDIGYYDEEKHFFIVDRL---KSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEK  498 (548)
T ss_dssp             EEEEEEECTTCCEEEEEEG---GGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             ccCEEEEcCCCeEEEeccc---cceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHH
Confidence            4899999999999999888   9999999999999999999999999999999999998888899999999877677889


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      +++++|+++|+.
T Consensus       499 ~l~~~~~~~l~~  510 (548)
T 2d1s_A          499 EVMDYVASQVSN  510 (548)
T ss_dssp             HHHHHHHTTSCG
T ss_pred             HHHHHHHHhccc
Confidence            999999999875

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.83  E-value=6.9e-21  Score=132.70  Aligned_cols=90  Identities=30%  Similarity=0.487  Sum_probs=64.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC--CCcC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG--VELT   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~   78 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++++++  ...+
T Consensus       420 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~  496 (549)
T 3g7s_A          420 TGDVGFIDEEGFLHFQDRV---KEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD  496 (549)
T ss_dssp             EEEEEEECTTSCEEEEEEC---------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCC
T ss_pred             cCcEEEEcCCceEEEeccc---cceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCC
Confidence            4899999999999999888   9999999999999999999999999999999999998888999999999876  4567


Q ss_pred             HHHHHHHHcCcCCCC
Q psy12100         79 EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 ~~~l~~~~~~~L~~~   93 (93)
                      .++|+++++++|+.+
T Consensus       497 ~~~l~~~l~~~L~~~  511 (549)
T 3g7s_A          497 EEDIIEWVRERISGY  511 (549)
T ss_dssp             HHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHhccCc
Confidence            899999999999864

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.83  E-value=1.3e-20  Score=133.94  Aligned_cols=89  Identities=20%  Similarity=0.345  Sum_probs=81.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++|+||+++|.||.   ||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++|+++++...+  
T Consensus       498 TGDlg~~d~dG~l~i~GR~---dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~  574 (652)
T 1pg4_A          498 SGDGARRDEDGYYWITGRV---DDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE  574 (652)
T ss_dssp             EEEEEEECTTSCEEEEEES---SSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             CCcEEEEcCCCcEEEEecC---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHH
Confidence            4899999999999999888   99999999999999999999999999999999999988889999999998775444  


Q ss_pred             -HHHHHHHHcCcCCC
Q psy12100         79 -EQEISSYVEPKKPV   92 (93)
Q Consensus        79 -~~~l~~~~~~~L~~   92 (93)
                       .++|+++|+++|++
T Consensus       575 ~~~~l~~~l~~~l~~  589 (652)
T 1pg4_A          575 LYAEVRNWVRKEIGP  589 (652)
T ss_dssp             HHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHhCCC
Confidence             47899999998875

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.83  E-value=2e-20  Score=129.67  Aligned_cols=89  Identities=26%  Similarity=0.427  Sum_probs=80.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||++|.++|+|.+++|++.+++..++.+++++ +.++...+.+
T Consensus       394 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~  469 (517)
T 3r44_A          394 TGDIGEIDDEGYLYIKDRL---KDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQ  469 (517)
T ss_dssp             EEEEEEECTTSCEEEEECG---GGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHH
T ss_pred             cceeEEEcCCeeEEEecCC---cCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHH
Confidence            4799999999999999887   99999999999999999999999999999999999988888888887 5556667889


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++|+++|+.+
T Consensus       470 ~l~~~l~~~L~~~  482 (517)
T 3r44_A          470 QIVEYCGTRLARY  482 (517)
T ss_dssp             HHHHHHHHHSCGG
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999998853

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.83  E-value=3e-20  Score=130.57  Aligned_cols=90  Identities=24%  Similarity=0.347  Sum_probs=81.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++|+||+++|.||.   ||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.+++++++.++...+  
T Consensus       456 TGDlg~~d~dG~l~~~GR~---dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~  532 (580)
T 3etc_A          456 TGDMAWMDEDGYLWFVGRA---DDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDS  532 (580)
T ss_dssp             EEEEEEECTTSCEEEEEES---SSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             cCcEEEECCCCcEEEEecC---CCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHH
Confidence            4899999999999999888   99999999999999999999999999999999999998899999999998775443  


Q ss_pred             -HHHHHHHHcCcCCCC
Q psy12100         79 -EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 -~~~l~~~~~~~L~~~   93 (93)
                       .++|+++++++|+++
T Consensus       533 ~~~~l~~~l~~~l~~~  548 (580)
T 3etc_A          533 LKNELQDHVKNVTAPY  548 (580)
T ss_dssp             HHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHHhhCCCc
Confidence             368999999988753

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.82  E-value=3.3e-20  Score=129.12  Aligned_cols=89  Identities=20%  Similarity=0.331  Sum_probs=80.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.+++++++.. ...+.+
T Consensus       411 TGDlg~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~  486 (539)
T 1mdb_A          411 TGDIVRLTRDGYIVVEGRA---KDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAA  486 (539)
T ss_dssp             EEEEEEECTTSCEEEEEEG---GGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHH
T ss_pred             cCceEEECCCCcEEEeccc---cceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHH
Confidence            4899999999999999888   999999999999999999999999999999999999888889999999873 356788


Q ss_pred             HHHHHHcCc-CCCC
Q psy12100         81 EISSYVEPK-KPVL   93 (93)
Q Consensus        81 ~l~~~~~~~-L~~~   93 (93)
                      +++++++++ |+.+
T Consensus       487 ~l~~~l~~~~L~~~  500 (539)
T 1mdb_A          487 ELKAFLRERGLAAY  500 (539)
T ss_dssp             HHHHHHHHTTCCGG
T ss_pred             HHHHHHHhCCCCcc
Confidence            999999987 8753

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.81  E-value=8.3e-20  Score=127.90  Aligned_cols=88  Identities=13%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|+||+++|.||.   ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++...  ..+.+
T Consensus       411 TGDlg~~d~dG~l~i~GR~---~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~  485 (563)
T 1amu_A          411 TGDQARWLSDGNIEYLGRI---DNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLE  485 (563)
T ss_dssp             EEEEEEECTTSCEEEEEEG---GGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHH
T ss_pred             cCCEEEEcCCCeEEEeccc---cCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHH
Confidence            4799999999999999888   999999999999999999999999999999999999888889999998764  35678


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +|+++++++|+.+
T Consensus       486 ~l~~~l~~~L~~y  498 (563)
T 1amu_A          486 QLRQFSSEELPTY  498 (563)
T ss_dssp             HHHHHHHHHSCGG
T ss_pred             HHHHHHHhhCchh
Confidence            9999999988753

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.81  E-value=7.5e-20  Score=126.61  Aligned_cols=91  Identities=19%  Similarity=0.242  Sum_probs=81.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC-CCCcCH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP-GVELTE   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~   79 (93)
                      +||.+++|++|++++.||.+  ||+||++|+||+|.|||+.|.++|+|.+++|++.+++..++.+++++++.+ ....+.
T Consensus       386 TGDl~~~~~dG~l~~~GR~~--d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~  463 (505)
T 3nyq_A          386 TGDMAVRDPDGYVRIVGRKA--TDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPAL  463 (505)
T ss_dssp             EEEEEEECTTSCEEEEEESS--CCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCH
T ss_pred             cCCeEEECCCccEEEeCCcc--CceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCH
Confidence            48999999999999998851  489999999999999999999999999999999999988999999999876 345678


Q ss_pred             HHHHHHHcCcCCCC
Q psy12100         80 QEISSYVEPKKPVL   93 (93)
Q Consensus        80 ~~l~~~~~~~L~~~   93 (93)
                      ++|+++++++|+.+
T Consensus       464 ~~l~~~l~~~L~~~  477 (505)
T 3nyq_A          464 GTLADHVAARLAPH  477 (505)
T ss_dssp             HHHHHHHHHHTCGG
T ss_pred             HHHHHHHHhhCCCC
Confidence            89999999998853

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.80  E-value=1.9e-19  Score=124.06  Aligned_cols=88  Identities=18%  Similarity=0.377  Sum_probs=79.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++..  ...+.+
T Consensus       379 TGDl~~~~~~G~l~~~GR~---dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~  453 (501)
T 3ipl_A          379 TGDIAEIDHEGYVMIYDRR---KDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKA  453 (501)
T ss_dssp             EEEEEEECTTSCEEEEEEC---CCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHH
T ss_pred             cCCEEEEcCCCeEEEEccc---cceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHH
Confidence            4899999999999999888   99999999999999999999999999999999999988888898988864  345789


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       454 ~l~~~l~~~L~~~  466 (501)
T 3ipl_A          454 QLIAYLSKHLAKY  466 (501)
T ss_dssp             HHHHHHHHHSCGG
T ss_pred             HHHHHHHhhCccc
Confidence            9999999998763

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.80  E-value=9e-20  Score=129.91  Aligned_cols=90  Identities=26%  Similarity=0.305  Sum_probs=77.7

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC---c
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE---L   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~   77 (93)
                      +||.+++|+||+++|.||.   ||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++|+++++..   .
T Consensus       507 TGDlg~~d~dG~l~i~GR~---dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~  583 (663)
T 1ry2_A          507 TGDGAAKDKDGYIWILGRV---DDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA  583 (663)
T ss_dssp             EEEEEEECTTCCEEECSCT---TSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--------
T ss_pred             cCCEEEEcCCCCEEEEeec---CCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccc
Confidence            4899999999999999887   999999999999999999999999999999999999888889999999886543   2


Q ss_pred             -C------HHHHHHHHcCcCCCC
Q psy12100         78 -T------EQEISSYVEPKKPVL   93 (93)
Q Consensus        78 -~------~~~l~~~~~~~L~~~   93 (93)
                       +      .++|+++++++|+++
T Consensus       584 ~~~~~~~l~~~l~~~l~~~L~~~  606 (663)
T 1ry2_A          584 TDDELQDIKKHLVFTVRKDIGPF  606 (663)
T ss_dssp             ----CCSHHHHHHHHHHHHTCTT
T ss_pred             cchhHHHHHHHHHHHHHHhCCCC
Confidence             1      578999999988764

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.79  E-value=4.1e-20  Score=128.70  Aligned_cols=89  Identities=21%  Similarity=0.265  Sum_probs=56.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|+++|.||.   ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.+++++++. +...+.+
T Consensus       416 TGDlg~~d~dG~l~~~GR~---~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~~~  491 (541)
T 1v25_A          416 TGDIAVWDEEGYVEIKDRL---KDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPTPE  491 (541)
T ss_dssp             EEEEEEECTTCCEEEEEES---SCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------
T ss_pred             cCCEEEEcCCceEEEeecc---cceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCCHH
Confidence            4899999999999999888   99999999999999999999999999999999999998889999999876 4445667


Q ss_pred             HHHHHHcC-cCCCC
Q psy12100         81 EISSYVEP-KKPVL   93 (93)
Q Consensus        81 ~l~~~~~~-~L~~~   93 (93)
                      ++++++++ +|+.+
T Consensus       492 ~l~~~~~~~~L~~~  505 (541)
T 1v25_A          492 ELNEHLLKAGFAKW  505 (541)
T ss_dssp             ---------CCCTT
T ss_pred             HHHHHHHhccCccc
Confidence            89999988 78764

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.79  E-value=1.2e-19  Score=127.22  Aligned_cols=89  Identities=26%  Similarity=0.403  Sum_probs=78.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC--Cc-
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV--EL-   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--~~-   77 (93)
                      +||.+++|++|+++|.||.   ||+||++|+||+|.|||+.|.++|+|.+++|++.+++..++.++++|++.++.  .. 
T Consensus       437 TGDlg~~d~dG~l~~~GR~---dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~  513 (570)
T 3c5e_A          437 LGDRGIKDEDGYFQFMGRA---DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDP  513 (570)
T ss_dssp             EEEEEEECTTSCEEEEEEG---GGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCH
T ss_pred             cceeEEEcCCceEEEEecC---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcch
Confidence            4799999999999999887   99999999999999999999999999999999999988888999999987653  11 


Q ss_pred             --CHHHHHHHHcCcCCC
Q psy12100         78 --TEQEISSYVEPKKPV   92 (93)
Q Consensus        78 --~~~~l~~~~~~~L~~   92 (93)
                        ..++|+++|+++|+.
T Consensus       514 ~~~~~~l~~~l~~~L~~  530 (570)
T 3c5e_A          514 EQLTKELQQHVKSVTAP  530 (570)
T ss_dssp             HHHHHHHHHHHHHHSCG
T ss_pred             HHHHHHHHHHHHhhCcc
Confidence              247889999888875

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.79  E-value=1.3e-20  Score=131.85  Aligned_cols=90  Identities=17%  Similarity=0.170  Sum_probs=16.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC-CCcCH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG-VELTE   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~   79 (93)
                      +||.+++|++|+++|.||.   ||+||++|+||+|.|||+.|.+||+|.+++|++.+++.+++.+++++++.+. ...+.
T Consensus       450 TGDlg~~d~dG~l~~~GR~---~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~  526 (570)
T 4gr5_A          450 TGDLARRRADGVLEYVGRA---DDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDA  526 (570)
T ss_dssp             EEEEEEECTTSCEEEEEC--------------------------------------------------------------
T ss_pred             CCCeEEECCCCeEEEEccc---CCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCH
Confidence            4799999999999999887   9999999999999999999999999999999999888788889999987654 34567


Q ss_pred             HHHHHHHcCcCCCC
Q psy12100         80 QEISSYVEPKKPVL   93 (93)
Q Consensus        80 ~~l~~~~~~~L~~~   93 (93)
                      ++|+++|+++|+.+
T Consensus       527 ~~l~~~l~~~l~~~  540 (570)
T 4gr5_A          527 AELRRHVAEALPAY  540 (570)
T ss_dssp             --------------
T ss_pred             HHHHHHHHhhCccc
Confidence            88999999988754

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.78  E-value=1.4e-20  Score=131.21  Aligned_cols=89  Identities=28%  Similarity=0.421  Sum_probs=15.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.+++++++.++...+.+
T Consensus       420 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~  496 (550)
T 3rix_A          420 SGDIAYWDEDEHFFIVDRL---KSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK  496 (550)
T ss_dssp             EEEEEEECTTCCEEEC----------------------------------------------------------------
T ss_pred             cCcEEEEeCCceEEEEecc---hheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHH
Confidence            4899999999999999888   9999999999999999999999999999999999998888999999998877767778


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      +++++++++|+.
T Consensus       497 ~l~~~~~~~l~~  508 (550)
T 3rix_A          497 EIVDYVASQVTT  508 (550)
T ss_dssp             ------------
T ss_pred             HHHHHHHHhccc
Confidence            899999888764

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.78  E-value=1.8e-20  Score=129.41  Aligned_cols=92  Identities=25%  Similarity=0.356  Sum_probs=17.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.+. ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.+++++++.++...+.+
T Consensus       379 TGDl~~~~~dG~l~~~GR~d~-~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~  457 (509)
T 3ivr_A          379 TGDMGRFDADGYLFYAGRAPE-KELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAAD  457 (509)
T ss_dssp             EEEEEEECTTSCEEEEEEC-------------------------------------------------------------
T ss_pred             cccEEEECCCceEEEeCCCCc-ceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHH
Confidence            489999999999999977643 8899999999999999999999999999999999998888899999998877767788


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       458 ~l~~~l~~~L~~~  470 (509)
T 3ivr_A          458 ALAEFVASLIARY  470 (509)
T ss_dssp             -------------
T ss_pred             HHHHHHHhhCccc
Confidence            9999999998764

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.78  E-value=8.7e-19  Score=121.19  Aligned_cols=88  Identities=13%  Similarity=-0.009  Sum_probs=77.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++ +||++++.||.   ||+||++|+||+|.|||+.|.++|+|.+++|++.+++..++.+++++++.++....  
T Consensus       380 TGDlg~~-~dG~l~~~GR~---~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~  455 (511)
T 3e7w_A          380 TGDAGFI-QDGQIFCQGRL---DFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEF  455 (511)
T ss_dssp             EEEEEEE-ETTEEEEEEES---SSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHH
T ss_pred             CCCeEEc-cCCeEEEEccc---cCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchh
Confidence            4799999 59999999887   99999999999999999999999999999999999888888999999988765443  


Q ss_pred             --HHHHHHHHcCcCCC
Q psy12100         79 --EQEISSYVEPKKPV   92 (93)
Q Consensus        79 --~~~l~~~~~~~L~~   92 (93)
                        .++++++++++|+.
T Consensus       456 ~~~~~l~~~l~~~L~~  471 (511)
T 3e7w_A          456 QLTSAIKKELAASLPA  471 (511)
T ss_dssp             HHHHHHHHHHHHHSCG
T ss_pred             hHHHHHHHHHHhhCch
Confidence              36788889888875

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.78  E-value=7.6e-19  Score=121.42  Aligned_cols=89  Identities=11%  Similarity=0.024  Sum_probs=78.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++ ++|++++.||.   ||+||++|+||+|.|||+.|.++|+|.+++|++++++..++.+++++++.++...+  
T Consensus       381 TGDlg~~-~dG~l~i~GR~---~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~  456 (512)
T 3fce_A          381 TGDAGYV-ENGLLFYNGRL---DFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEF  456 (512)
T ss_dssp             EEEEEEE-ETTEEEEEEEG---GGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHH
T ss_pred             CCceEEe-cCCEEEEeccc---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchh
Confidence            4799999 79999999888   99999999999999999999999999999999999888888899999987664333  


Q ss_pred             --HHHHHHHHcCcCCCC
Q psy12100         79 --EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 --~~~l~~~~~~~L~~~   93 (93)
                        .++++++|+++|+.+
T Consensus       457 ~~~~~l~~~l~~~L~~~  473 (512)
T 3fce_A          457 KLTSAIKKELNERLPNY  473 (512)
T ss_dssp             HHHHHHHHHHHTTSCGG
T ss_pred             hhHHHHHHHHHhhCchh
Confidence              257899999988753

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.78  E-value=4.8e-19  Score=122.53  Aligned_cols=89  Identities=15%  Similarity=0.098  Sum_probs=70.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCC-CCceEEEEEEECCCCCcC-
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTL-SGEVPKAFVVKKPGVELT-   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~-   78 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.++|+|.++++++.+++. .++.+++++++.++.... 
T Consensus       384 TGDlg~~d~dG~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~  460 (521)
T 3l8c_A          384 TGDIGSLTEDNILLYGGRL---DFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERF  460 (521)
T ss_dssp             EEEEEEECSSSCEEEEEEG---GGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGC
T ss_pred             CCCEEEEeCCCeEEEeCcc---cceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccc
Confidence            4899999999999999888   99999999999999999999999999999999987654 457889999998764321 


Q ss_pred             ------HHHHHHHHcCcCCC
Q psy12100         79 ------EQEISSYVEPKKPV   92 (93)
Q Consensus        79 ------~~~l~~~~~~~L~~   92 (93)
                            .++++++|+++|+.
T Consensus       461 ~~~~~~~~~l~~~l~~~l~~  480 (521)
T 3l8c_A          461 DRELELTKAIKASVKDHMMS  480 (521)
T ss_dssp             SSHHHHHHHHHHHSGGGSCG
T ss_pred             ccchhhHHHHHHHHHhhCcc
Confidence                  57899999999875

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.76  E-value=2e-18  Score=119.64  Aligned_cols=89  Identities=25%  Similarity=0.268  Sum_probs=73.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL---   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---   77 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.+||+|.+++|++. ++..++.+++++++.++...   
T Consensus       410 TGDl~~~~~~G~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~  485 (529)
T 2v7b_A          410 SGDKYCRLPNGCYVYAGRS---DDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEI  485 (529)
T ss_dssp             EEEEEEECTTSCEEEEEEG---GGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHH
T ss_pred             cCceEEECCCccEEEeCcc---CCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchh
Confidence            4899999999999999887   9999999999999999999999999999999998 55567788999998766431   


Q ss_pred             CHHHHHHHHcCcCCCC
Q psy12100         78 TEQEISSYVEPKKPVL   93 (93)
Q Consensus        78 ~~~~l~~~~~~~L~~~   93 (93)
                      ..++++++++++|+.+
T Consensus       486 ~~~~l~~~l~~~L~~~  501 (529)
T 2v7b_A          486 LAEELKAFVKDRLAPH  501 (529)
T ss_dssp             HHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHhhcchh
Confidence            2468999999998864

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.76  E-value=9.8e-20  Score=126.89  Aligned_cols=88  Identities=18%  Similarity=0.209  Sum_probs=18.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||+.|.+||+|.+++|++++++..++.+++++++.+ ...+..
T Consensus       420 TGDlg~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~  495 (544)
T 3o83_A          420 SGDLVQRTPDGNLRVVGRI---KDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAV  495 (544)
T ss_dssp             EEEEEEECTTSCEEEEEEE---C---------------------------------------------------------
T ss_pred             cCCEEEEcCCCCEEEEeec---CCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHH
Confidence            4799999999999999888   999999999999999999999999999999999999888888999998765 344567


Q ss_pred             HHHHHHcC-cCCC
Q psy12100         81 EISSYVEP-KKPV   92 (93)
Q Consensus        81 ~l~~~~~~-~L~~   92 (93)
                      ++++++++ +|+.
T Consensus       496 ~l~~~~~~~~l~~  508 (544)
T 3o83_A          496 VLRRHLMELGIAQ  508 (544)
T ss_dssp             -------------
T ss_pred             HHHHHHHhCCCCc
Confidence            78888887 5764

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.75  E-value=5.2e-18  Score=119.71  Aligned_cols=87  Identities=20%  Similarity=0.297  Sum_probs=79.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|+||++++.||.   ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++..+  ..+..
T Consensus       415 TGDl~~~~~dG~l~~~GR~---dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~  489 (617)
T 3rg2_A          415 SGDLISIDPEGYITVQGRE---KDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAV  489 (617)
T ss_dssp             EEEEEEECTTSCEEEEEEC---SSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHH
T ss_pred             cCceEEEcCCceEEEEeec---CCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHH
Confidence            4899999999999999888   999999999999999999999999999999999998888889999999875  35678


Q ss_pred             HHHHHHcC-cCCC
Q psy12100         81 EISSYVEP-KKPV   92 (93)
Q Consensus        81 ~l~~~~~~-~L~~   92 (93)
                      ++++++++ .||.
T Consensus       490 ~l~~~l~~~~lp~  502 (617)
T 3rg2_A          490 QVRRFLREQGIAE  502 (617)
T ss_dssp             HHHHHHHTTTCCG
T ss_pred             HHHHHHHhCCCcc
Confidence            89999988 5775

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.75  E-value=1.6e-19  Score=132.67  Aligned_cols=90  Identities=26%  Similarity=0.399  Sum_probs=19.4

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|+++|.||.   ||+||++|+||+|.|||+.|.++|+|.+++|++.+++..++.+++++++.++...+.+
T Consensus       462 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~  538 (979)
T 3tsy_A          462 TGDIGLIDDDDELFIVDRL---KELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSED  538 (979)
T ss_dssp             EEEEEEECTTSCEEEEEES---CC--------------------------------------------------------
T ss_pred             cCCEEEEcCCceEEEecCC---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHH
Confidence            4899999999999999888   9999999999999999999999999999999999988888899999998777667778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++|+.+
T Consensus       539 ~l~~~l~~~l~~~  551 (979)
T 3tsy_A          539 DVKQFVSKQVVFY  551 (979)
T ss_dssp             -------------
T ss_pred             HHHHHHHHhcccc
Confidence            9999999998764

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.74  E-value=1e-17  Score=95.56  Aligned_cols=58  Identities=10%  Similarity=0.043  Sum_probs=52.8

Q ss_pred             cccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC
Q psy12100         21 FLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT   78 (93)
Q Consensus        21 R~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   78 (93)
                      |+|||||++|.||||.|||++|.+||+|.++++++++++.+++.+.+++++.++...+
T Consensus         2 rADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~   59 (109)
T 3lax_A            2 NADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDD   59 (109)
T ss_dssp             GGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCC
T ss_pred             CcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccc
Confidence            6799999999999999999999999999999999999988889999999988765443

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.72  E-value=1.6e-17  Score=125.00  Aligned_cols=88  Identities=15%  Similarity=0.249  Sum_probs=79.6

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.++.+.||++++.||.   ||+||++|+||+|.|||+.|.++|+|.+|+|++.+++.++..++++++...  ..+.+
T Consensus       842 TGDl~~~~~dG~l~~~GR~---d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~  916 (1304)
T 2vsq_A          842 TGDLARWLPDGTIEYAGRI---DDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAE  916 (1304)
T ss_dssp             EEEEEEECTTSCEEEEEEG---GGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHH
T ss_pred             cCCeEEEcCCCeEEEEcCC---CCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHH
Confidence            4899999999999999888   999999999999999999999999999999999988877888999998764  45778


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +++++++++||.+
T Consensus       917 ~l~~~l~~~Lp~y  929 (1304)
T 2vsq_A          917 DVKAHLKKQLPAY  929 (1304)
T ss_dssp             HHHHHHHHHSCGG
T ss_pred             HHHHHHHHhChHh
Confidence            9999999999863

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.71  E-value=5.1e-18  Score=113.52  Aligned_cols=88  Identities=8%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhh---cCCCcceEEEE-eeeCCCCCceEEEEEEECCCCC
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIM---QIAGVADVAVV-GVPDTLSGEVPKAFVVKKPGVE   76 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~   76 (93)
                      +||.+++|++|+++ .||.   ||+||++|+||+|.|||+.|.   +||.|.+++|+ +.+++..++.++++++.... .
T Consensus       232 TGDlg~~d~~g~~~-~GR~---dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~  306 (358)
T 4gs5_A          232 TNDLVEIHGNAFQW-IGRA---DNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-E  306 (358)
T ss_dssp             EEEEEEECSSEEEE-EEEG---GGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-H
T ss_pred             cCCccccccCceEE-cccc---cCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-C
Confidence            48999999999554 4776   999999999999999998774   57999988876 67788788888888775433 3


Q ss_pred             cCHHHHHHHHcCcCCCC
Q psy12100         77 LTEQEISSYVEPKKPVL   93 (93)
Q Consensus        77 ~~~~~l~~~~~~~L~~~   93 (93)
                      ...++|+++|+++|+.+
T Consensus       307 ~~~~~l~~~l~~~L~~~  323 (358)
T 4gs5_A          307 ALTERLTAEIRSRVSTY  323 (358)
T ss_dssp             HHHHHHHHHHHHHSCGG
T ss_pred             cCHHHHHHHHHhhCCCC
Confidence            45678999999998753

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.70  E-value=2.2e-18  Score=120.16  Aligned_cols=90  Identities=10%  Similarity=0.101  Sum_probs=17.5

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcC-CCcceEEEEeeeCCCCCceEEEEEEECCCCCc--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQI-AGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL--   77 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--   77 (93)
                      +||.+++|++|+++|.||.   ||+||++|+||+|.|||++|.++ |.+.++++++.+++..++..++.++...+...  
T Consensus       408 TGDlg~~d~dG~l~~~GR~---dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~  484 (562)
T 3ite_A          408 TGDIVRMDADSSILFLGRK---DEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG  484 (562)
T ss_dssp             EEEEEEECTTSCEEEEEEC-------------------------------------------------------------
T ss_pred             cCCEEEEcCCCeEEEEccc---cCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc
Confidence            4799999999999999887   99999999999999999999998 77888888888888777665555554433221  


Q ss_pred             -----------CHHHHHHHHcCcCCCC
Q psy12100         78 -----------TEQEISSYVEPKKPVL   93 (93)
Q Consensus        78 -----------~~~~l~~~~~~~L~~~   93 (93)
                                 ..++|+++|+++|+.+
T Consensus       485 ~~~~~~~~~~~~~~~l~~~~~~~L~~y  511 (562)
T 3ite_A          485 ELRWINENYKEINNSLRQACEQTLPAY  511 (562)
T ss_dssp             ---------------------------
T ss_pred             cccccccchhhHHHHHHHHHHhhCCcc
Confidence                       1348999999998864

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.69  E-value=1.8e-17  Score=112.65  Aligned_cols=87  Identities=8%  Similarity=0.074  Sum_probs=73.7

Q ss_pred             CcccceeccCC------e---EEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEE
Q psy12100          1 MEEEKALSVAP------Y---KKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVK   71 (93)
Q Consensus         1 ~~~~~~~d~~g------~---~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~   71 (93)
                      +||.++++++|      +   +++.||.   ||+||++|+||+|.+||++|.++|+|.++++++.+++..++.++++|++
T Consensus       303 TGDl~~~~~~gc~cG~~~~~il~i~GR~---dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~  379 (436)
T 3qov_A          303 TRDLTRILPGKCPCGRTHLRIDRIKGRS---DDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVEL  379 (436)
T ss_dssp             EEEEECEECSCCTTCCCSCEECCCCCBS---SSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCCEEEEcCCCCCCCCCccccCcccCcc---CCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEE
Confidence            47999999998      6   6888777   9999999999999999999999999999999999888778899999999


Q ss_pred             CCCCCcC----HHHHHHHHcCcCC
Q psy12100         72 KPGVELT----EQEISSYVEPKKP   91 (93)
Q Consensus        72 ~~~~~~~----~~~l~~~~~~~L~   91 (93)
                      + +...+    .++++++++++|+
T Consensus       380 ~-~~~~~~~~~~~~l~~~l~~~l~  402 (436)
T 3qov_A          380 S-DLSTDNYIELEKIRRDIIRQLK  402 (436)
T ss_dssp             C-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred             c-CccccchhhHHHHHHHHHHHHH
Confidence            8 54443    4667776666543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.67  E-value=1.1e-17  Score=113.78  Aligned_cols=88  Identities=14%  Similarity=0.060  Sum_probs=73.4

Q ss_pred             Ccccceecc-CCeE-----EEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100          1 MEEEKALSV-APYK-----KLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG   74 (93)
Q Consensus         1 ~~~~~~~d~-~g~~-----~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~   74 (93)
                      +||.+++|+ +|++     ++.||.   ||+||++|+||+|.+||++|.+||+|.++++++++++..++.++++|++.++
T Consensus       308 TGDl~~~~~~~G~~~~~i~~i~GR~---~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~  384 (437)
T 2y27_A          308 TRDLTRLLPGTARTMRRMEKITGRS---DDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPE  384 (437)
T ss_dssp             EEEEECEECCSSSSSCEECCCCEEG---GGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTT
T ss_pred             cCCEEEEeCCCCCCccccCcccccc---CCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCC
Confidence            479999999 6986     788777   9999999999999999999999999999999998877677889999988765


Q ss_pred             CC---cCHHHHHHHHcCcCC
Q psy12100         75 VE---LTEQEISSYVEPKKP   91 (93)
Q Consensus        75 ~~---~~~~~l~~~~~~~L~   91 (93)
                      ..   .+.++++++|+++|+
T Consensus       385 ~~~~~~~~~~l~~~l~~~l~  404 (437)
T 2y27_A          385 TAPDTAAIQVAKQALAYDIK  404 (437)
T ss_dssp             TTTCHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHHHHH
Confidence            43   234667777766553

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.67  E-value=1.8e-17  Score=112.83  Aligned_cols=88  Identities=10%  Similarity=0.104  Sum_probs=72.4

Q ss_pred             CcccceeccC-CeE-----EEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC-
Q psy12100          1 MEEEKALSVA-PYK-----KLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP-   73 (93)
Q Consensus         1 ~~~~~~~d~~-g~~-----~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-   73 (93)
                      +||.+++|++ |++     ++.||.   ||+||++|+||+|.+||++|.++|+|.++++++++++..++.+++++++.+ 
T Consensus       310 TGDl~~~~~~cG~~~~~l~~i~GR~---~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~  386 (443)
T 2y4o_A          310 TRDLTALLPPTARAMRRLAKITGRS---DDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSE  386 (443)
T ss_dssp             EEEEECEECCSSSSSCEECCCCEES---SCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHH
T ss_pred             cCCEEEEcCCCCCCccccCcccccc---CCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCc
Confidence            4799999999 987     788777   999999999999999999999999999999999887766788999999875 


Q ss_pred             -CC---CcCHHHHHHHHcCcCC
Q psy12100         74 -GV---ELTEQEISSYVEPKKP   91 (93)
Q Consensus        74 -~~---~~~~~~l~~~~~~~L~   91 (93)
                       +.   ..+.++++++|+++|+
T Consensus       387 ~~~~~~~~~~~~l~~~l~~~l~  408 (443)
T 2y4o_A          387 AAASVTDGERAALARELQHRIK  408 (443)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHH
Confidence             21   2334567777666543

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.65  E-value=2.8e-17  Score=114.93  Aligned_cols=85  Identities=7%  Similarity=-0.016  Sum_probs=70.9

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHh-hcCCCcc--eEEEEeeeCCCCCceEEEEEEECCCC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENII-MQIAGVA--DVAVVGVPDTLSGEVPKAFVVKKPGV--   75 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--   75 (93)
                      +||.+++| +|+++|.||.   ||+||++|+||+|.|||+.| ..+|.|.  +|+|++++++. ++.+++++++.++.  
T Consensus       440 TGDlg~~d-dG~l~~~GR~---dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~  514 (590)
T 3kxw_A          440 TGDLGFLH-ENELYVTGRI---KDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD  514 (590)
T ss_dssp             EEEEEEEE-TTEEEEEEES---SCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCC
T ss_pred             cCcEEEEE-CCEEEEEcCc---cceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccccc
Confidence            47999999 9999999888   99999999999999999999 8899998  79999998875 67788888887654  


Q ss_pred             CcCHHHHHHHHcCcC
Q psy12100         76 ELTEQEISSYVEPKK   90 (93)
Q Consensus        76 ~~~~~~l~~~~~~~L   90 (93)
                      ..+.+++.++|+++|
T Consensus       515 ~~~~~~l~~~l~~~l  529 (590)
T 3kxw_A          515 DVAQDNLFNEIFELV  529 (590)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHH
Confidence            234566777766554

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.64  E-value=2.2e-16  Score=111.85  Aligned_cols=67  Identities=9%  Similarity=0.022  Sum_probs=58.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEE
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVK   71 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~   71 (93)
                      +||.+++|+||++++.||.   ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..+.. +++++.
T Consensus       400 TGDl~~~~~dG~l~~~GR~---dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~l-v~~~~~  466 (620)
T 4dg8_A          400 TGDRARYDEQGRLRFIGRG---DGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQL-LCAWTG  466 (620)
T ss_dssp             EEEEEEECTTSCEEEEECS---SSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEE-EEEEEE
T ss_pred             CCCEEEECCCCeEEEEccC---CCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEE-EEEEec
Confidence            4799999999999999887   999999999999999999999999999999999888744444 444443

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=96.17  E-value=0.0022  Score=45.97  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=28.4

Q ss_pred             cCCeEEEeeeeccccceeecCCeeechHHHHHHhhc
Q psy12100          9 VAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ   44 (93)
Q Consensus         9 ~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~   44 (93)
                      ....+.|+||.   +++|++.|.++++.+||+++..
T Consensus       426 ~~p~i~~~gR~---~~~l~~~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          426 SAPQFHFVRRK---NVLLSIDSDKTDEAELQKAVDN  458 (609)
T ss_dssp             TEEEEEEEEET---TCCBCSSSCCBCHHHHHHHHHH
T ss_pred             CCcEEEEEEec---CCeEEccccCCCHHHHHHHHHH
Confidence            34677788777   9999999999999999998873

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=96.01  E-value=0.0034  Score=44.78  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=28.4

Q ss_pred             CCeEEEeeeeccccceeecCCeeechHHHHHHhhcC
Q psy12100         10 APYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQI   45 (93)
Q Consensus        10 ~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~   45 (93)
                      ...+.|+||.   +++|++.|.++++.+||+++.+.
T Consensus       415 ~p~i~f~gR~---~~~l~~~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          415 APQFKFVRRE---NVVLSIDSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             EEEEEEEEET---TEEECSSSCCEEHHHHHHHHHHC
T ss_pred             CcEEEEEEec---CCEEEeeeeECCHHHHHHHHHHH
Confidence            4577788777   99999999999999999998753

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=94.37  E-value=0.027  Score=40.25  Aligned_cols=31  Identities=16%  Similarity=0.073  Sum_probs=26.7

Q ss_pred             CeEEEeeeeccccceeecCCeeechHHHHHHhhc
Q psy12100         11 PYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ   44 (93)
Q Consensus        11 g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~   44 (93)
                      ..+.|+||.   ++++++.|.++++.+||+++.+
T Consensus       423 p~~~~~gR~---~~~l~~~Ge~~~~~~v~~al~~  453 (581)
T 4epl_A          423 PQLKFICRR---NLILSINIDKNTERDLQLSVES  453 (581)
T ss_dssp             EEEEEEEET---TCCBCSSSCCBCHHHHHHHHHH
T ss_pred             cEEEEEeec---CCeEEeeeeECCHHHHHHHHHH
Confidence            356677776   9999999999999999998875

>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A

Probab=90.65  E-value=0.97  Score=23.40  Aligned_cols=46  Identities=15%  Similarity=0.121  Sum_probs=30.5

Q ss_pred             hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcC
Q psy12100         35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK   90 (93)
Q Consensus        35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L   90 (93)
                      ..++++.|.+.|.|.+|..+.-..     -..+.+...     +.+++.+++.+.|
T Consensus        15 ~~~~~~~l~~~peV~e~~~vtG~~-----D~ll~v~~~-----d~~~l~~~i~~~l   60 (83)
T 2cvi_A           15 EREVMEKLLAMPEVKEAYVVYGEY-----DLIVKVETD-----TLKDLDQFITEKI   60 (83)
T ss_dssp             HHHHHHHHHTSTTEEEEEECBSSC-----SEEEEEEES-----SHHHHHHHHHTTG
T ss_pred             HHHHHHHHhCCCCeeEEEEEcccC-----CEEEEEEEC-----CHHHHHHHHHHHh
Confidence            478999999999999998764322     244444443     5666777665443

>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}

Probab=88.58  E-value=1.6  Score=23.00  Aligned_cols=47  Identities=26%  Similarity=0.178  Sum_probs=30.2

Q ss_pred             hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcCC
Q psy12100         35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP   91 (93)
Q Consensus        35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L~   91 (93)
                      ..++.+.|.++|.|.+|..+.-..     -..+.+...     +.+++.+++.++|.
T Consensus        15 ~~~~~~~l~~~peV~~~~~vtG~~-----D~ll~v~~~-----d~~~l~~~l~~~l~   61 (92)
T 2djw_A           15 VQALGEAIAELPQVAEVYSVTGPY-----DLVALVRLK-----DVEELDDVVTQGIL   61 (92)
T ss_dssp             HHHHHHHHTTSTTEEEEEEESSSS-----SEEEEEEES-----SGGGHHHHCCCCCT
T ss_pred             HHHHHHHHhcCCCeEEEEEeecCC-----CEEEEEEEC-----CHHHHHHHHHHhcc
Confidence            578889999999999998874322     244444443     34556666654443

>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}

Probab=84.61  E-value=1.9  Score=22.03  Aligned_cols=44  Identities=16%  Similarity=0.058  Sum_probs=27.9

Q ss_pred             hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcC
Q psy12100         35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEP   88 (93)
Q Consensus        35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~   88 (93)
                      ..++.+.|.++|.|.+|..+.-.     .-..+.+..     .+.+++.+.+.+
T Consensus        15 ~~~~~~~l~~~peV~~~~~vtG~-----~d~l~~v~~-----~d~~~l~~~~~~   58 (83)
T 2zbc_A           15 EDEVFERLKSMSEVTEVHVVYGV-----YDIVVKVEA-----DSMDKLKDFVTN   58 (83)
T ss_dssp             HHHHHHHHTTCTTEEEEEECSSS-----CSEEEEEEC-----SSHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEEecc-----CCEEEEEEE-----CCHHHHHHHHHH
Confidence            37889999999999998876322     223444443     245556655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-16
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-04
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	7e-16
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-13
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-13
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-13
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	6e-13
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-12

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 69.5 bits (169), Expect = 3e-16
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
           +V+P ELE+I++Q   + D  V G+PD  +GE+P A VV + G  +TE+EI  YV  +  
Sbjct: 445 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 504

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 9   VAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44
           V   KKL GGV F++ +P+   GK+   ++  I+++
Sbjct: 503 VTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 538

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 68.9 bits (167), Expect = 7e-16
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
            + P+E+E ++    GV +V V+G+ D   G+   A VV + G  L+   + ++    +
Sbjct: 411 NIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 62.7 bits (151), Expect = 1e-13
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
           KV+  E+EN ++    V D A+V +PD   GE    F++ +        E+ +++
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFL 492

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 61.1 bits (147), Expect = 4e-13
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
            +S  +LEN +M    V + AVV +P     E P A VV +      E+     ++    
Sbjct: 437 WISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFA 496

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 60.8 bits (147), Expect = 4e-13
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEIS 83
           ++   E+E+ ++    +A+ AVVG+P  + G+   A+V    G E + +  +
Sbjct: 522 RLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 573

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 60.3 bits (145), Expect = 6e-13
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE------QEISSY 85
           +V   E+E+I+++   +++ AV    D        A+ V +  + L +      +E+ +Y
Sbjct: 423 RVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTY 482

Query: 86  VEPKK 90
           + P  
Sbjct: 483 MIPSY 487

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (144), Expect = 1e-12
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 32  KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE 79
           ++S  E+E  I++   VA+ AVVG  D L+G+   AFVV K     + 
Sbjct: 512 RLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST 559

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.86
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.84
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.84
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.83
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.83
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.8
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.76
d2cg4a2	86	Regulatory protein AsnC {Escherichia coli [TaxId:	89.95
d1i1ga2	80	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	85.95

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.86  E-value=6.5e-22  Score=138.74  Aligned_cols=89  Identities=20%  Similarity=0.353  Sum_probs=81.8

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCH-
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE-   79 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-   79 (93)
                      +||.+++|++|++++.||.   ||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++|+++++...+. 
T Consensus       494 TGDl~~~d~dG~l~i~GR~---dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~  570 (643)
T d1pg4a_         494 SGDGARRDEDGYYWITGRV---DDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE  570 (643)
T ss_dssp             EEEEEEECTTSCEEEEEES---SSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             cCCEEEECCCceEEEeccc---ccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHH
Confidence            3899999999999999888   999999999999999999999999999999999999988999999999998876554 


Q ss_pred             --HHHHHHHcCcCCC
Q psy12100         80 --QEISSYVEPKKPV   92 (93)
Q Consensus        80 --~~l~~~~~~~L~~   92 (93)
                        .+|+++|+++|++
T Consensus       571 ~~~~i~~~~~~~L~~  585 (643)
T d1pg4a_         571 LYAEVRNWVRKEIGP  585 (643)
T ss_dssp             HHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHhhCCc
Confidence              4899999998875

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.84  E-value=5e-21  Score=127.97  Aligned_cols=89  Identities=19%  Similarity=0.356  Sum_probs=82.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .+|.++.|+||++++.||.   ||+||++|++|+|.+||+.|.+||+|.+|+|++.+++..++.++++|+++++...+.+
T Consensus       383 TgD~g~~~~dG~l~~~GR~---~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~  459 (503)
T d3cw9a1         383 TSDVAVWTPEGTVRILGRV---DDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSAD  459 (503)
T ss_dssp             EEEEEEECTTSCEEEEEES---SCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             cccccccccCCeEEeCCCc---CCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHH
Confidence            3799999999999999888   9999999999999999999999999999999999998888899999999888888899


Q ss_pred             HHHHHHc-CcCCC
Q psy12100         81 EISSYVE-PKKPV   92 (93)
Q Consensus        81 ~l~~~~~-~~L~~   92 (93)
                      +++++++ ++|+.
T Consensus       460 ~l~~~~~~~~l~~  472 (503)
T d3cw9a1         460 ALDTFCRSSELAD  472 (503)
T ss_dssp             HHHHHHHHSSSCG
T ss_pred             HHHHHHHhcCCCC
Confidence            9999994 67765

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.3e-21  Score=136.43  Aligned_cols=90  Identities=26%  Similarity=0.312  Sum_probs=77.0

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT--   78 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--   78 (93)
                      +||.+++|++|+++|.||.   ||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++|+++++...+  
T Consensus       484 TGDlg~~d~dG~l~i~GR~---dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~  560 (640)
T d1ry2a_         484 TGDGAAKDKDGYIWILGRV---DDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA  560 (640)
T ss_dssp             EEEEEEECTTCCEEECSCT---TSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--------
T ss_pred             cCCceeECCCCCEEEEEcC---CCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCcccc
Confidence            4899999999999999887   99999999999999999999999999999999999988899999999998764322  


Q ss_pred             --------HHHHHHHHcCcCCCC
Q psy12100         79 --------EQEISSYVEPKKPVL   93 (93)
Q Consensus        79 --------~~~l~~~~~~~L~~~   93 (93)
                              .++|.++++++|+++
T Consensus       561 ~~~~~~~l~~~l~~~~~~~L~~~  583 (640)
T d1ry2a_         561 TDDELQDIKKHLVFTVRKDIGPF  583 (640)
T ss_dssp             ----CCSHHHHHHHHHHHHTCTT
T ss_pred             chHHHHHHHHHHHHHHHhhCCCC
Confidence                    256888888888753

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.83  E-value=5.3e-21  Score=129.74  Aligned_cols=89  Identities=28%  Similarity=0.421  Sum_probs=78.3

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.+++|++|++++.||.   ||+||++|++|+|.+||+.|.++|+|.+|+|++++++..++.++++|+++++...+.+
T Consensus       417 TGDl~~~~~~G~~~~~GR~---~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~  493 (541)
T d1lcia_         417 SGDIAYWDEDEHFFIVDRL---KSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK  493 (541)
T ss_dssp             EEEEEEECTTCCEEEC--------CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             CCCeeEEcCCeEEEEeeee---cCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHH
Confidence            3799999999999999887   9999999999999999999999999999999999998888999999999888888889


Q ss_pred             HHHHHHcCcCCC
Q psy12100         81 EISSYVEPKKPV   92 (93)
Q Consensus        81 ~l~~~~~~~L~~   92 (93)
                      +++++++++|++
T Consensus       494 ~l~~~~~~~l~~  505 (541)
T d1lcia_         494 EIVDYVASQVTT  505 (541)
T ss_dssp             HHHHHHHHHSCG
T ss_pred             HHHHHHHHhCCc
Confidence            999999988764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.83  E-value=1.8e-20  Score=126.78  Aligned_cols=88  Identities=13%  Similarity=0.174  Sum_probs=80.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      .||.+++|++|++++.||.   ||+||++|+||+|.+||+.|.+||+|.+|+|++.+++..++.++++++++++  .+.+
T Consensus       395 TGD~g~~d~~G~l~i~GR~---~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~--~~~~  469 (514)
T d1amua_         395 TGDQARWLSDGNIEYLGRI---DNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPLE  469 (514)
T ss_dssp             EEEEEEECTTSCEEEEEEG---GGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC--CCHH
T ss_pred             ECCEEEECCCCcEEEEecc---cCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC--CCHH
Confidence            3789999999999999887   9999999999999999999999999999999999998889999999998765  4678


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      +|+++++++|+++
T Consensus       470 ~l~~~~~~~l~~~  482 (514)
T d1amua_         470 QLRQFSSEELPTY  482 (514)
T ss_dssp             HHHHHHHHHSCGG
T ss_pred             HHHHHHHhhCCcc
Confidence            9999999988753

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=7.9e-20  Score=123.67  Aligned_cols=88  Identities=20%  Similarity=0.339  Sum_probs=79.1

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      ++|.++.|+||++++.||.   ||+||++|++|+|.+||+.|.+||+|.+|+|++.+++..++.++++|+++++ ..+..
T Consensus       411 tGD~~~~~~dG~l~~~GR~---~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~  486 (536)
T d1mdba_         411 TGDIVRLTRDGYIVVEGRA---KDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAA  486 (536)
T ss_dssp             EEEEEEECTTSCEEEEEEG---GGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCHH
T ss_pred             cCccccccCCCceecCCCc---ceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHH
Confidence            4799999999999999888   9999999999999999999999999999999999998888899999998765 35778


Q ss_pred             HHHHHHcCc-CCC
Q psy12100         81 EISSYVEPK-KPV   92 (93)
Q Consensus        81 ~l~~~~~~~-L~~   92 (93)
                      +++++++++ |+.
T Consensus       487 ~l~~~l~~~~l~~  499 (536)
T d1mdba_         487 ELKAFLRERGLAA  499 (536)
T ss_dssp             HHHHHHHHTTCCG
T ss_pred             HHHHHHHhcCCCc
Confidence            899999875 764

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=1.3e-19  Score=123.18  Aligned_cols=90  Identities=19%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100          1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ   80 (93)
Q Consensus         1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (93)
                      +||.+++|++|++++.||.   ||+||++|++|+|.+||+.|.+||+|.+++|++++++..++.++++|+++.+.....+
T Consensus       409 TGDlg~~~~~G~l~~~GR~---~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~~~  485 (534)
T d1v25a_         409 TGDIAVWDEEGYVEIKDRL---KDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEE  485 (534)
T ss_dssp             EEEEEEECTTCCEEEEEES---SCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------
T ss_pred             cCceeEECCCccEEEeccc---ccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCHHH
Confidence            4799999999999999887   9999999999999999999999999999999999998889999999988755443334


Q ss_pred             HHHHHHcCcCCCC
Q psy12100         81 EISSYVEPKKPVL   93 (93)
Q Consensus        81 ~l~~~~~~~L~~~   93 (93)
                      .++.+++++|+++
T Consensus       486 ~~~~~~~~~l~~~  498 (534)
T d1v25a_         486 LNEHLLKAGFAKW  498 (534)
T ss_dssp             --------CCCTT
T ss_pred             HHHHHHHhcCCcC
Confidence            4444577777753

>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Lrp/AsnC-like transcriptional regulator C-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=89.95  E-value=0.59  Score=23.34  Aligned_cols=49  Identities=6%  Similarity=-0.109  Sum_probs=32.8

Q ss_pred             chHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100         34 SPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPV   92 (93)
Q Consensus        34 ~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L~~   92 (93)
                      ...++.+.|.++|.|.+|..+.-..     -+.+.+...     +.+++.+++.++|..
T Consensus        15 ~~~~~~~~l~~~peV~~~~~vtG~~-----D~i~~v~~~-----d~~~l~~~i~~~i~~   63 (86)
T d2cg4a2          15 DYPSALAKLESLDEVTEAYYTTGHY-----SIFIKVMCR-----SIDALQHVLINKIQT   63 (86)
T ss_dssp             GHHHHHHHHHTCTTEEEEEEESSSC-----SEEEEEEES-----CHHHHHHHHHHTTTT
T ss_pred             CHHHHHHHHHcCCCEEEEEEecCCc-----eEEEEEEEC-----CHHHHHHHHHHHhhc
Confidence            4567888999999999999874322     244555443     567777777665543

>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Lrp/AsnC-like transcriptional regulator C-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.95  E-value=0.67  Score=22.62  Aligned_cols=48  Identities=10%  Similarity=0.078  Sum_probs=29.9

Q ss_pred             hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100         35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPV   92 (93)
Q Consensus        35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L~~   92 (93)
                      ..++.+.|.++|+|.++..+.-     ..-+.+.+..+     +.+++.+++.++|..
T Consensus        16 ~~~v~~~l~~~peV~~~~~vtG-----~~D~~~~v~~~-----d~~~l~~~l~~~i~~   63 (80)
T d1i1ga2          16 LFEVAEKLKEYDFVKELYLSSG-----DHMIMAVIWAK-----DGEDLAEIISNKIGK   63 (80)
T ss_dssp             HHHHHHHHHHSTTEEEECCCSS-----SSSEEEEEEES-----SHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHcCCCEeEEEEECC-----CCCEEEEEEEC-----CHHHHHHHHHhhhcc
Confidence            3456677888999988776532     22244555543     567777777665543