Psyllid ID: psy12130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MKVKWTKMLGCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSSLGYIPSANDI
Secondary Structure (PSIPRED)
ccccEEEEEcccccccEEcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEHcccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHcccccccccccc
Coil and Loop (DISEMBL)
mkvkwtkmlgcnadgelafpsfgtscggggAAMASYlksapygvngiGLSMDSLhsslgyipsandi
Flexible Loop (DISEMBL)
MKVKWTKMLGCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSslgyipsandi
Low Complexity Region (SEG)
MKVKWTKMLGCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSSLGYIPSANDI
Disordered region (IsUnstruct)
****WTKMLGCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSL*************
Disordered Region (DISOPRED)
***KWT*MLGCNADGELAFPSFGT*****GAAMASYLKSAPYGVNGIGLSMDSLHSSLGYI******
Disordered Region (DISEMBL)
MKVKWTKMLGCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSSLGYIPSANDI
Disordered Region (DISPRO)
*KVKWTKMLGCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSSL*YIPS****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKVKWTKMLGCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSSLGYIPSANDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
262036854	93	orthodenticle2 [Gryllus bimaculatus]	0.895	0.645	0.625	3e-13

>gi|262036854|dbj|BAI47568.1| orthodenticle2 [Gryllus bimaculatus]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 5  WTKMLGCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGL---SMDSLHSSLGYI 61
          W  +  CN DGELAFP F + CG G  A  +YLKS+PY VNGIGL   SMDSLHSS+GY 
Sbjct: 7  WAHVRRCNPDGELAFPPFSSPCGSGSGAGMAYLKSSPYSVNGIGLAMPSMDSLHSSMGY- 65

Query: 62 PSAN 65
          P+AN
Sbjct: 66 PTAN 69

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
UNIPROTKB|P32242	354	OTX1 "Homeobox protein OTX1" [	0.417	0.079	0.612	0.00055
UNIPROTKB|E1BL43	355	OTX1 "Uncharacterized protein"	0.417	0.078	0.612	0.00055
UNIPROTKB|J9P273	355	OTX1 "Uncharacterized protein"	0.417	0.078	0.612	0.00055
MGI|MGI:97450	355	Otx1 "orthodenticle homolog 1	0.417	0.078	0.612	0.00055
RGD|3237	355	Otx1 "orthodenticle homeobox 1	0.417	0.078	0.612	0.00055
UNIPROTKB|Q63410	355	Otx1 "Homeobox protein OTX1" [	0.417	0.078	0.612	0.00055
UNIPROTKB|F1SIW9	356	OTX1 "Uncharacterized protein"	0.417	0.078	0.612	0.00055
ZFIN|ZDB-GENE-980526-27	338	otx1a "orthodenticle homolog 1	0.417	0.082	0.612	0.00065
UNIPROTKB|F1T0C9	35	OTX2 "Homeobox protein OTX2" [	0.417	0.8	0.580	0.00073

UNIPROTKB|P32242 OTX1 "Homeobox protein OTX1" [Homo sapiens (taxid:9606)]

 Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query:    33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
             M SYLK  PYG+NG+GL+   MD LH S+GY
Sbjct:     1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0022037 "metencephalon development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0048852 "diencephalon morphogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007275 "multicellular organismal development" evidence=NAS

UNIPROTKB|E1BL43 OTX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query:    33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
             M SYLK  PYG+NG+GL+   MD LH S+GY
Sbjct:     1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31

GO:0005634 "nucleus" evidence=IEA

GO:0048852 "diencephalon morphogenesis" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0022037 "metencephalon development" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|J9P273 OTX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query:    33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
             M SYLK  PYG+NG+GL+   MD LH S+GY
Sbjct:     1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:97450 Otx1 "orthodenticle homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query:    33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
             M SYLK  PYG+NG+GL+   MD LH S+GY
Sbjct:     1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IGI

GO:0022037 "metencephalon development" evidence=IGI

GO:0030900 "forebrain development" evidence=IGI

GO:0030901 "midbrain development" evidence=IGI

GO:0042472 "inner ear morphogenesis" evidence=IGI;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048852 "diencephalon morphogenesis" evidence=IGI

RGD|3237 Otx1 "orthodenticle homeobox 1" [Rattus norvegicus (taxid:10116)]

 Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query:    33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
             M SYLK  PYG+NG+GL+   MD LH S+GY
Sbjct:     1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=ISO

GO:0022037 "metencephalon development" evidence=ISO

GO:0030900 "forebrain development" evidence=ISO

GO:0030901 "midbrain development" evidence=ISO

GO:0042472 "inner ear morphogenesis" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048852 "diencephalon morphogenesis" evidence=ISO

UNIPROTKB|Q63410 Otx1 "Homeobox protein OTX1" [Rattus norvegicus (taxid:10116)]

 Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query:    33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
             M SYLK  PYG+NG+GL+   MD LH S+GY
Sbjct:     1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1SIW9 OTX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query:    33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
             M SYLK  PYG+NG+GL+   MD LH S+GY
Sbjct:     1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31

GO:0005634 "nucleus" evidence=IEA

GO:0048852 "diencephalon morphogenesis" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0022037 "metencephalon development" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

ZFIN|ZDB-GENE-980526-27 otx1a "orthodenticle homolog 1a" [Danio rerio (taxid:7955)]

 Score = 93 (37.8 bits), Expect = 0.00065, P = 0.00065
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query:    33 MASYLKSAPYGVNGIGL---SMDSLHSSLGY 60
             M SYLK APY +NG+GL   +MD LH S+GY
Sbjct:     1 MMSYLKQAPYAMNGLGLGGATMDLLHPSVGY 31

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030917 "midbrain-hindbrain boundary development" evidence=IGI

GO:0030901 "midbrain development" evidence=IGI

GO:0030902 "hindbrain development" evidence=IGI

GO:0003406 "retinal pigment epithelium development" evidence=IGI

UNIPROTKB|F1T0C9 OTX2 "Homeobox protein OTX2" [Homo sapiens (taxid:9606)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query:    33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
             M SYLK  PY VNG+ L+   MD LH S+GY
Sbjct:     1 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGY 31


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       67        67   0.00091  102 3  11 22  0.50    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  513 (55 KB)
  Total size of DFA:  94 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.93u 0.10s 9.03t   Elapsed:  00:00:00
  Total cpu time:  8.93u 0.10s 9.03t   Elapsed:  00:00:00
  Start:  Thu Aug 15 16:28:10 2013   End:  Thu Aug 15 16:28:10 2013

GO:0003677 "DNA binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
KOG2251|consensus	228		97.11

>KOG2251|consensus

Probab=97.11  E-value=0.00022  Score=53.32  Aligned_cols=30  Identities=43%  Similarity=0.820  Sum_probs=27.3

Q ss_pred             hhccCCCccccccc---hhhhcc--ccCCcCCCCCC
Q psy12130         36 YLKSAPYGVNGIGL---SMDSLH--SSLGYIPSAND   66 (67)
Q Consensus        36 YlkqppYsvNGLsL---~mDLLH--pavgY~Patpr   66 (67)
                      |+++|||++|++++   .||++|  +.|+| +.+||
T Consensus         1 ~~~~~~~~~~~~~fa~p~~d~~h~~~~vP~-~~~pR   35 (228)
T KOG2251|consen    1 YLNQPPYAVNGLAFAAPYMDLLHPKPGVPY-SSGPR   35 (228)
T ss_pred             CCCCCCCCcCccccccccccccccCCCCCc-Cccch
Confidence            67889999999999   999999  78999 88876

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00