Psyllid ID: psy12140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MSSSTSDGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHcccccccHHHHcccccHHHHHHHcccccccHHHHHcccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccccccccHHHHHHccEEcccccccHHHHHHHHHHHHHHHHHccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHccHHcccHHHHHcccHHHHHHHHcccccccHHHHHHccEEcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHccHHHHHHccHHHHHHHHcccccccHHHHHHHcEEcccccccHHHHHHHHHHHHHHHHHccHHHHHcc
Coil and Loop (DISEMBL)
mssstsdgswvnthwaIRAGifdvvpasclenltpeDFRLLLNGVGDINVTVLISYTsfidesgepseRLIKFKRWLWSIVEKMTHLERMDLGCAIAIRagifdvvpasclenltpeDFRLLLNGVGDINVTVLISYTsfidesgepseRLIKFKRWLWSIVEKMTHLERMDL
Flexible Loop (DISEMBL)
mssstsdgswvNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTsfidesgepserlIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTsfidesgepserliKFKRWLWSIVEKmthlermdl
Low Complexity Region (SEG)
MSSSTSDGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL
Disordered region (IsUnstruct)
********SWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMT*******
Disordered Region (DISOPRED)
***********NTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL**MD*
Disordered Region (DISEMBL)
*********WVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL
Disordered Region (DISPRO)
*******GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSSTSDGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
O95071	2799	E3 ubiquitin-protein liga	yes	N/A	0.445	0.027	0.636	1e-24
Q80TP3	2792	E3 ubiquitin-protein liga	yes	N/A	0.445	0.027	0.636	1e-24
Q62671	2788	E3 ubiquitin-protein liga	yes	N/A	0.445	0.027	0.623	2e-24
P51592	2885	E3 ubiquitin-protein liga	yes	N/A	0.445	0.026	0.636	1e-23

>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2

 Score =  112 bits (280), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct: 2653 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2712

Query: 76   WLWSIVEKMTHLERMDL 92
            W WSIVEKM+  ER DL
Sbjct: 2713 WFWSIVEKMSMTERQDL 2729

E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation (By similarity). Involved in maturation and/or transcriptional regulation of mRNA by activating CDK9 by polyubiquitination. May play a role in control of cell cycle progression. May have tumor suppressor function. Regulates DNA topoisomerase II binding protein (TopBP1) in the DNA damage response. Plays an essential role in extraembryonic development.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2

 Score =  112 bits (280), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct: 2646 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2705

Query: 76   WLWSIVEKMTHLERMDL 92
            W WSIVEKM+  ER DL
Sbjct: 2706 WFWSIVEKMSMTERQDL 2722

E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. Involved in maturation and/or transcriptional regulation of mRNA by activating CDK9 by polyubiquitination. May play a role in control of cell cycle progression. May have tumor suppressor function. Plays an essential role in extraembryonic development. Regulates DNA topoisomerase II binding protein (TopBP1) for the DNA damage response.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus GN=Ubr5 PE=1 SV=3

 Score =  111 bits (277), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/77 (62%), Positives = 64/77 (83%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct: 2642 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2701

Query: 76   WLWSIVEKMTHLERMDL 92
            W WSIVE+M+  ER DL
Sbjct: 2702 WFWSIVERMSMTERQDL 2718

E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation (By similarity). Involved in maturation and/or transcriptional regulation of mRNA by activating CDK9 by polyubiquitination. May play a role in control of cell cycle progression. May have tumor suppressor function. Regulates DNA topoisomerase II binding protein (TopBP1) for the DNA damage response. Plays an essential role in extraembryonic development.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P51592|HYD_DROME E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd PE=1 SV=3

 Score =  109 bits (272), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 62/77 (80%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A++ G+FDV+P + + NLT ED RLLLNGVGDINV+ LISYT+F DES E  ++L+KFK+
Sbjct: 2739 ALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDESSEGPDKLLKFKK 2798

Query: 76   WLWSIVEKMTHLERMDL 92
            W WSIVEKM  +ER DL
Sbjct: 2799 WFWSIVEKMNIMERQDL 2815

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (By similarity). Required for regulation of cell proliferation in imaginal disks and germ cells. Acts as a negative regulator of hh, ci and dpp expression in the anterior of the eye disk.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
345498132	2922	PREDICTED: E3 ubiquitin-protein ligase h	0.445	0.026	0.753	2e-28
345498130	2928	PREDICTED: E3 ubiquitin-protein ligase h	0.445	0.026	0.753	2e-28
307203970	2836	E3 ubiquitin-protein ligase UBR5 [Harpeg	0.445	0.027	0.766	4e-28
189237186	2858	PREDICTED: similar to ubiquitin-protein	0.445	0.026	0.779	4e-28
270007492	2916	hypothetical protein TcasGA2_TC014081 [T	0.445	0.026	0.779	4e-28
357616934	2852	hypothetical protein KGM_10406 [Danaus p	0.445	0.026	0.740	8e-28
242013030	2738	ubiquitin-protein ligase EDD1, putative	0.445	0.028	0.753	9e-28
350406689	2826	PREDICTED: E3 ubiquitin-protein ligase h	0.445	0.027	0.753	2e-27
340721355	2826	PREDICTED: e3 ubiquitin-protein ligase h	0.445	0.027	0.753	2e-27
328787152	2795	PREDICTED: e3 ubiquitin-protein ligase h	0.445	0.027	0.753	2e-27

>gi|345498132|ref|XP_001605335.2| PREDICTED: E3 ubiquitin-protein ligase hyd-like isoform 1 [Nasonia vitripennis]

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/77 (75%), Positives = 68/77 (88%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+FDV+P   L+ LT ED RLLLNGVGDINV+VLISYTSF DESGEP++RL+KFKR
Sbjct: 2776 AMREGVFDVLPEGALDGLTSEDLRLLLNGVGDINVSVLISYTSFNDESGEPTDRLVKFKR 2835

Query: 76   WLWSIVEKMTHLERMDL 92
            WLWSIVEKM+H+ER DL
Sbjct: 2836 WLWSIVEKMSHVERQDL 2852

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498130|ref|XP_003428158.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like isoform 2 [Nasonia vitripennis]

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/77 (75%), Positives = 68/77 (88%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+FDV+P   L+ LT ED RLLLNGVGDINV+VLISYTSF DESGEP++RL+KFKR
Sbjct: 2782 AMREGVFDVLPEGALDGLTSEDLRLLLNGVGDINVSVLISYTSFNDESGEPTDRLVKFKR 2841

Query: 76   WLWSIVEKMTHLERMDL 92
            WLWSIVEKM+H+ER DL
Sbjct: 2842 WLWSIVEKMSHVERQDL 2858

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203970|gb|EFN82877.1| E3 ubiquitin-protein ligase UBR5 [Harpegnathos saltator]

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/77 (76%), Positives = 67/77 (87%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+FDV+P   L+ LT ED RLLLNGVGDINVTVLISYTSF DESGE +ERL+KFKR
Sbjct: 2690 AMREGVFDVLPDGALDGLTSEDLRLLLNGVGDINVTVLISYTSFNDESGESTERLVKFKR 2749

Query: 76   WLWSIVEKMTHLERMDL 92
            WLWSIVEKM+H+ER DL
Sbjct: 2750 WLWSIVEKMSHVERQDL 2766

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237186|ref|XP_967079.2| PREDICTED: similar to ubiquitin-protein ligase [Tribolium castaneum]

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/77 (77%), Positives = 66/77 (85%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            +IR G+ DV+P   L++LT ED RLLLNGVGDINV VLISYTSF DESGE SERL+KFKR
Sbjct: 2712 SIRTGVLDVLPEGSLDSLTAEDLRLLLNGVGDINVAVLISYTSFNDESGENSERLVKFKR 2771

Query: 76   WLWSIVEKMTHLERMDL 92
            WLWSIVEKMTHLER DL
Sbjct: 2772 WLWSIVEKMTHLERQDL 2788

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007492|gb|EFA03940.1| hypothetical protein TcasGA2_TC014081 [Tribolium castaneum]

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/77 (77%), Positives = 66/77 (85%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            +IR G+ DV+P   L++LT ED RLLLNGVGDINV VLISYTSF DESGE SERL+KFKR
Sbjct: 2770 SIRTGVLDVLPEGSLDSLTAEDLRLLLNGVGDINVAVLISYTSFNDESGENSERLVKFKR 2829

Query: 76   WLWSIVEKMTHLERMDL 92
            WLWSIVEKMTHLER DL
Sbjct: 2830 WLWSIVEKMTHLERQDL 2846

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357616934|gb|EHJ70493.1| hypothetical protein KGM_10406 [Danaus plexippus]

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 57/77 (74%), Positives = 65/77 (84%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+ DV+P S +E LT ED RLLLNGVGDINVT L+SYTSF DESGEP ERL +FKR
Sbjct: 2706 AMRVGVLDVLPESAVEGLTAEDLRLLLNGVGDINVTALVSYTSFNDESGEPPERLARFKR 2765

Query: 76   WLWSIVEKMTHLERMDL 92
            WLW+IV+KMTHLER DL
Sbjct: 2766 WLWAIVDKMTHLERQDL 2782

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013030|ref|XP_002427224.1| ubiquitin-protein ligase EDD1, putative [Pediculus humanus corporis] gi|212511528|gb|EEB14486.1| ubiquitin-protein ligase EDD1, putative [Pediculus humanus corporis]

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/77 (75%), Positives = 66/77 (85%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+FDV+P   L+ LT ED RLLLNGVGDINV VLISYTSF DESGE SERL+KFKR
Sbjct: 2592 ALRTGVFDVLPVGSLDGLTAEDIRLLLNGVGDINVAVLISYTSFEDESGESSERLVKFKR 2651

Query: 76   WLWSIVEKMTHLERMDL 92
            WLWSIV+KM+H+ER DL
Sbjct: 2652 WLWSIVDKMSHIERQDL 2668

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406689|ref|XP_003487850.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like [Bombus impatiens]

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/77 (75%), Positives = 66/77 (85%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+FDV+P   L+ LT ED RLLLNGVGDINV+VLISYTSF DESGEP++RL KFKR
Sbjct: 2681 AMREGVFDVLPEGALDGLTSEDLRLLLNGVGDINVSVLISYTSFNDESGEPADRLAKFKR 2740

Query: 76   WLWSIVEKMTHLERMDL 92
            WLWSIVEKM+H ER DL
Sbjct: 2741 WLWSIVEKMSHSERQDL 2757

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721355|ref|XP_003399087.1| PREDICTED: e3 ubiquitin-protein ligase hyd-like [Bombus terrestris]

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/77 (75%), Positives = 66/77 (85%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+FDV+P   L+ LT ED RLLLNGVGDINV+VLISYTSF DESGEP++RL KFKR
Sbjct: 2681 AMREGVFDVLPEGALDGLTSEDLRLLLNGVGDINVSVLISYTSFNDESGEPADRLAKFKR 2740

Query: 76   WLWSIVEKMTHLERMDL 92
            WLWSIVEKM+H ER DL
Sbjct: 2741 WLWSIVEKMSHSERQDL 2757

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787152|ref|XP_392625.4| PREDICTED: e3 ubiquitin-protein ligase hyd isoform 1 [Apis mellifera]

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/77 (75%), Positives = 66/77 (85%)

Query: 16   AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
            A+R G+FDV+P   L+ LT ED RLLLNGVGDINV+VLISYTSF DESGEP++RL KFKR
Sbjct: 2650 AMREGVFDVLPEGALDGLTSEDLRLLLNGVGDINVSVLISYTSFNDESGEPADRLAKFKR 2709

Query: 76   WLWSIVEKMTHLERMDL 92
            WLWSIVEKM+H ER DL
Sbjct: 2710 WLWSIVEKMSHSERQDL 2726

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
UNIPROTKB|I3LGM1	1000	LOC100738301 "Uncharacterized	0.445	0.077	0.636	5.8e-23
UNIPROTKB|K7GPI8	1585	LOC100738301 "Uncharacterized	0.445	0.048	0.636	2.1e-22
UNIPROTKB|E7ET84	527	UBR5 "E3 ubiquitin-protein lig	0.445	0.146	0.636	4e-22
UNIPROTKB|J9P5M9	2307	UBR5 "Uncharacterized protein"	0.445	0.033	0.636	5.1e-22
UNIPROTKB|F1P0U1	2775	Gga.55416 "Uncharacterized pro	0.445	0.027	0.636	7.8e-22
UNIPROTKB|E7EMW7	2792	UBR5 "E3 ubiquitin-protein lig	0.445	0.027	0.636	8e-22
UNIPROTKB|F1N0L2	2798	UBR5 "Uncharacterized protein"	0.445	0.027	0.636	8e-22
UNIPROTKB|F1PBF9	2798	UBR5 "Uncharacterized protein"	0.445	0.027	0.636	8e-22
UNIPROTKB|J3KMW7	2798	UBR5 "E3 ubiquitin-protein lig	0.445	0.027	0.636	8e-22
UNIPROTKB|O95071	2799	UBR5 "E3 ubiquitin-protein lig	0.445	0.027	0.636	8e-22

UNIPROTKB|I3LGM1 LOC100738301 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 264 (98.0 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:   854 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 913

Query:   157 WLWSIVEKMTHLERMDL 173
             W WSIVEKM+  ER DL
Sbjct:   914 WFWSIVEKMSMTERQDL 930

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|K7GPI8 LOC100738301 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 264 (98.0 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:  1439 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 1498

Query:   157 WLWSIVEKMTHLERMDL 173
             W WSIVEKM+  ER DL
Sbjct:  1499 WFWSIVEKMSMTERQDL 1515

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E7ET84 UBR5 "E3 ubiquitin-protein ligase UBR5" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 4.0e-22, P = 4.0e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    16 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:   381 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 440

Query:    76 WLWSIVEKMTHLERMDL 92
             W WSIVEKM+  ER DL
Sbjct:   441 WFWSIVEKMSMTERQDL 457

GO:0003723 "RNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|J9P5M9 UBR5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:  2161 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2220

Query:   157 WLWSIVEKMTHLERMDL 173
             W WSIVEKM+  ER DL
Sbjct:  2221 WFWSIVEKMSMTERQDL 2237

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1P0U1 Gga.55416 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 264 (98.0 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:  2629 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2688

Query:   157 WLWSIVEKMTHLERMDL 173
             W WSIVEKM+  ER DL
Sbjct:  2689 WFWSIVEKMSMTERQDL 2705

GO:0003723 "RNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

UNIPROTKB|E7EMW7 UBR5 "E3 ubiquitin-protein ligase UBR5" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:  2646 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2705

Query:   157 WLWSIVEKMTHLERMDL 173
             W WSIVEKM+  ER DL
Sbjct:  2706 WFWSIVEKMSMTERQDL 2722

GO:0003723 "RNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

UNIPROTKB|F1N0L2 UBR5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 264 (98.0 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:  2652 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2711

Query:   157 WLWSIVEKMTHLERMDL 173
             W WSIVEKM+  ER DL
Sbjct:  2712 WFWSIVEKMSMTERQDL 2728

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0050847 "progesterone receptor signaling pathway" evidence=IEA

GO:0035413 "positive regulation of catenin import into nucleus" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0033160 "positive regulation of protein import into nucleus, translocation" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1PBF9 UBR5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:  2652 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2711

Query:   157 WLWSIVEKMTHLERMDL 173
             W WSIVEKM+  ER DL
Sbjct:  2712 WFWSIVEKMSMTERQDL 2728

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|J3KMW7 UBR5 "E3 ubiquitin-protein ligase UBR5" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:  2652 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2711

Query:   157 WLWSIVEKMTHLERMDL 173
             W WSIVEKM+  ER DL
Sbjct:  2712 WFWSIVEKMSMTERQDL 2728

GO:0003723 "RNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

UNIPROTKB|O95071 UBR5 "E3 ubiquitin-protein ligase UBR5" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query:    97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
             A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+TSF DESGE +E+L++FKR
Sbjct:  2653 AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 2712

Query:   157 WLWSIVEKMTHLERMDL 173
             W WSIVEKM+  ER DL
Sbjct:  2713 WFWSIVEKMSMTERQDL 2729

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IDA;IMP

GO:2000780 "negative regulation of double-strand break repair" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0050847 "progesterone receptor signaling pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0035413 "positive regulation of catenin import into nucleus" evidence=IMP

GO:0033160 "positive regulation of protein import into nucleus, translocation" evidence=IMP

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IMP

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51592	HYD_DROME	6, ., 3, ., 2, ., -	0.6363	0.4450	0.0266	yes	N/A
Q80TP3	UBR5_MOUSE	6, ., 3, ., 2, ., -	0.6363	0.4450	0.0275	yes	N/A
Q62671	UBR5_RAT	6, ., 3, ., 2, ., -	0.6233	0.4450	0.0276	yes	N/A
O95071	UBR5_HUMAN	6, ., 3, ., 2, ., -	0.6363	0.4450	0.0275	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
smart00119	328	smart00119, HECTc, Domain Homologous to E6-AP Carb	2e-15
smart00119	328	smart00119, HECTc, Domain Homologous to E6-AP Carb	3e-15
pfam00632	298	pfam00632, HECT, HECT-domain (ubiquitin-transferas	9e-13
pfam00632	298	pfam00632, HECT, HECT-domain (ubiquitin-transferas	9e-13
cd00078	352	cd00078, HECTc, HECT domain; C-terminal catalytic	9e-11
cd00078	352	cd00078, HECTc, HECT domain; C-terminal catalytic	9e-11

>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A R G  +V+P + L+   PE+  LL+ G  +I+V  L S T +       S+ +    +
Sbjct: 187 AFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTEYKGGYSANSQTI----K 242

Query: 76  WLWSIVEKMTHLERMDL-----GCAIAIRAGIFDVVPASCLENLTPEDFRL 121
           W W +VE  T+ ER  L     G +     G   + P   +     +D RL
Sbjct: 243 WFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKAGSDDERL 293

E3 ubiquitin-protein ligases. Can bind to E2 enzymes. Length = 328

>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A R G  +V+P + L+   PE+  LL+ G  +I+V  L S T +       S+ +    +
Sbjct: 187 AFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTEYKGGYSANSQTI----K 242

Query: 157 WLWSIVEKMTHLERMDL 173
           W W +VE  T+ ER  L
Sbjct: 243 WFWEVVESFTNEERRKL 259

E3 ubiquitin-protein ligases. Can bind to E2 enzymes. Length = 328

>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase)

 Score = 64.2 bits (157), Expect = 9e-13
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A R G + V+P   L   TPE+  LL+ G  +I+V  L   T +     + S       +
Sbjct: 156 AFREGFYSVIPKELLSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYSKNS----PTIK 211

Query: 76  WLWSIVEKMTHLERMDL 92
           W W ++E+ T  ER   
Sbjct: 212 WFWEVLEEFTQEERRKF 228

The name HECT comes from Homologous to the E6-AP Carboxyl Terminus. Length = 298

>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase)

 Score = 64.2 bits (157), Expect = 9e-13
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A R G + V+P   L   TPE+  LL+ G  +I+V  L   T +     + S       +
Sbjct: 156 AFREGFYSVIPKELLSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYSKNS----PTIK 211

Query: 157 WLWSIVEKMTHLERMDL 173
           W W ++E+ T  ER   
Sbjct: 212 WFWEVLEEFTQEERRKF 228

The name HECT comes from Homologous to the E6-AP Carboxyl Terminus. Length = 298

>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A R G  +V+P   L   TPE+  LL+ G  DI++  L   T +               +
Sbjct: 210 AFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEY----KGGYSSDSPTIQ 265

Query: 76  WLWSIVEKMTHLER 89
           W W ++E  T+ ER
Sbjct: 266 WFWEVLESFTNEER 279

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352

>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A R G  +V+P   L   TPE+  LL+ G  DI++  L   T +               +
Sbjct: 210 AFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEY----KGGYSSDSPTIQ 265

Query: 157 WLWSIVEKMTHLER 170
           W W ++E  T+ ER
Sbjct: 266 WFWEVLESFTNEER 279

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
COG5021	872	HUL4 Ubiquitin-protein ligase [Posttranslational m	99.95
KOG0939|consensus	720		99.95
smart00119	336	HECTc Domain Homologous to E6-AP Carboxyl Terminus	99.95
cd00078	352	HECTc HECT domain; C-terminal catalytic domain of	99.94
PF00632	317	HECT: HECT-domain (ubiquitin-transferase); InterPr	99.91
KOG0941|consensus	850		99.9
KOG0942|consensus	1001		99.84
KOG4427|consensus	1096		99.81
KOG0939|consensus	720		99.77
smart00119	336	HECTc Domain Homologous to E6-AP Carboxyl Terminus	99.75
cd00078	352	HECTc HECT domain; C-terminal catalytic domain of	99.74
COG5021	872	HUL4 Ubiquitin-protein ligase [Posttranslational m	99.74
KOG0942|consensus	1001		99.68
KOG0940|consensus	358		99.68
KOG4427|consensus	1096		99.65
KOG0941|consensus	850		99.63
KOG0943|consensus	3015		99.62
PF00632	317	HECT: HECT-domain (ubiquitin-transferase); InterPr	99.62
KOG0170|consensus	621		99.55
KOG0943|consensus	3015		99.31
KOG0940|consensus	358		99.08
KOG0170|consensus	621		98.76

>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.2e-28  Score=231.48  Aligned_cols=132  Identities=17%  Similarity=0.284  Sum_probs=112.1

Q ss_pred             CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCC-CCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhc
Q psy12140          7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMT   85 (173)
Q Consensus         7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~-idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~   85 (173)
                      .-+|++|+.||..||++|||+++|.+|+++|||+||||.++ ||++|||+||.|.|....     .+.|.|||++++++.
T Consensus       714 ~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~GY~~~-----s~~I~wFWeii~~f~  788 (872)
T COG5021         714 NKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYHGYTED-----SPIIVWFWEIISEFD  788 (872)
T ss_pred             hhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhcccccccccC-----CcHHHHHHHHHHHhC
Confidence            45899999999999999999999999999999999999999 999999999999863222     578999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCC
Q psy12140         86 HLERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEP  147 (173)
Q Consensus        86 ~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~  147 (173)
                      .++|++||||+|    +.+.||..|++.+++..-  ++.|.-.+..+-.+|+||||||..-.++
T Consensus       789 ~eer~klLQFvT----GtsriPi~GFk~L~~~~~~~kf~I~~~g~~~~rLP~ahTCFN~L~LP~  848 (872)
T COG5021         789 FEERAKLLQFVT----GTSRIPINGFKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFNRLKLPE  848 (872)
T ss_pred             HHHHhhhheecc----CCCCCCCCChhhcCCCcccceeeeecCCCccccCCchhhhhhhccCCC
Confidence            999999999999    688899999999987531  2223323334446999999999875554

>KOG0939|consensus

Probab=99.95  E-value=3.6e-28  Score=220.01  Aligned_cols=143  Identities=17%  Similarity=0.245  Sum_probs=114.3

Q ss_pred             CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      +++|++|++||++||+++||..++++|+++|||+|+||.|+|||+|||+||+|.++...     ...|+|||++|+++++
T Consensus       562 ~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~~~~~~-----~~~i~wFWrav~sf~~  636 (720)
T KOG0939|consen  562 TNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYLGYTKA-----SSVIQWFWRAVRSFDQ  636 (720)
T ss_pred             HhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhhccccc-----chHHHHHHHHHhhhcH
Confidence            57899999999999999999999999999999999999999999999999999875433     3489999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhh-h-HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHH
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPED-F-RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWL  158 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~e-l-~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wF  158 (173)
                      ++|++||||+|    +++-+|.+|+..+.+.. + ++-|.-.+.-.-.+|.+|||||....+..+.-...-+.+
T Consensus       637 eeraklLqFvT----GtSkvP~~GF~~l~g~ng~q~fqi~~~~~s~d~LP~ahTCfnqL~LP~Y~Sye~l~~~L  706 (720)
T KOG0939|consen  637 EERAKLLQFVT----GTSKVPLGGFAALEGMNGVQKFQIHADPGSTDRLPTAHTCFNQLFLPHYASYEQLRESL  706 (720)
T ss_pred             HHHHhhHeeec----ccccCCcccccccccCCcceeEEEEeCCCCCCCCcchhhhhhhhcCcchhhHHHHHHHH
Confidence            99999999999    46678999998776631 1 222333332223799999999977655544333344433

>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with

Probab=99.95  E-value=1.6e-27  Score=205.09  Aligned_cols=146  Identities=24%  Similarity=0.344  Sum_probs=121.6

Q ss_pred             CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      ..+++.|++||++||++|||.++|++|+|+||+.++||.++||+++|++||+|.+++..+    ++.|+|||+++++|++
T Consensus       183 ~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~~----~~~i~~Fw~vl~~~s~  258 (336)
T smart00119      183 NKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYSEN----SQTIKWFWEVVESFTN  258 (336)
T ss_pred             hhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCCCC----CHHHHHHHHHHHHCCH
Confidence            468999999999999999999999999999999999999999999999999999655432    5789999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE  163 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~  163 (173)
                      ++|++||+|+|    +++.+|.++++.+.|. +.  |...+.-|-.+|.||||||...-+.+.....+.+-+..+++
T Consensus       259 ee~~~fL~F~T----G~~rlP~~G~~~l~~~-~~--i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~  328 (336)
T smart00119      259 EERRKLLQFVT----GSSRLPVGGFAALSPK-FT--IRKAGSDDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAIN  328 (336)
T ss_pred             HHHHHhheecc----CCCCCCCCchhhcCCc-eE--EEECCCCCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHH
Confidence            99999999999    5788999999887652 33  33333345689999999998766654444566666666664

E3 ubiquitin-protein ligases. Can bind to E2 enzymes.

>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

Probab=99.94  E-value=5.1e-27  Score=202.67  Aligned_cols=146  Identities=22%  Similarity=0.322  Sum_probs=119.1

Q ss_pred             CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      .+++++|++||++||++|||.++|++|+|+||+.++||.++||+++|++||+|.+++...    ++.|+|||+++++|++
T Consensus       201 ~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~id~~~l~~~~~y~~~~~~~----~~~i~~Fw~vl~~~s~  276 (352)
T cd00078         201 NKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKGGYSSD----SPTIQWFWEVLESFTN  276 (352)
T ss_pred             cchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCCCCHHHHHhceEecCCCCCC----CHHHHHHHHHHHhCCH
Confidence            358999999999999999999999999999999999999999999999999999865422    6789999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE  163 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~  163 (173)
                      ++|++||+|+|    +++.+|.++++.+.+. +.  |.-.+.-+-.+|.||||||...-+.+.....+.+-+..+++
T Consensus       277 eer~~fL~F~T----G~~rlP~~G~~~l~~~-i~--i~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~  346 (352)
T cd00078         277 EERKKFLQFVT----GSSRLPVGGFADLNPK-FT--IRRVGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAIN  346 (352)
T ss_pred             HHHHHhheeec----CCCCCCCcchhhcCCC-eE--EEECCCCCCCCCcchhhhccccCCCCCCHHHHHHHHHHHHH
Confidence            99999999999    5778999999877643 33  33223235689999999998765554433455555555543

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.

>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []

Probab=99.91  E-value=8.6e-25  Score=185.38  Aligned_cols=129  Identities=22%  Similarity=0.329  Sum_probs=101.3

Q ss_pred             CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCC-CCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~-idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      +++++|++||++||++|+|..+|++|+++||+.++||.++ ||+++|+++|+|.+++...    ++.++|||+++++|++
T Consensus       162 ~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~----~~~i~~fw~vl~~~s~  237 (317)
T PF00632_consen  162 ESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTES----SPVIQWFWEVLEEFSQ  237 (317)
T ss_dssp             TTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TT----SHHHHHHHHHHHHS-H
T ss_pred             cccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccc----cceeeEEeeeeccCCH
Confidence            5789999999999999999999999999999999999999 9999999999999655432    5789999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCC
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGE  146 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~  146 (173)
                      ++|++||+|+|    +++.+|+++++.+.+ .+.+...+.. .+-.+|.|||||+...-+
T Consensus       238 ~~~~~fL~F~T----G~~~lP~~G~~~l~~-~i~i~~~~~~-~~~~LP~a~TCf~~L~LP  291 (317)
T PF00632_consen  238 EERRKFLRFVT----GSSRLPPGGFSNLNP-KITIQFSDDS-PDDRLPTAHTCFNTLKLP  291 (317)
T ss_dssp             HHHHHHHHHHH----SSSSB-TTGGGGGE--EEEEEEESC--STTS--EEEGGGTEEEEE
T ss_pred             HHhheeEEEec----CCCCCCccccccccc-eeEEeecCCC-ccccCceecCcCCEEECC
Confidence            99999999999    578899999986643 2333322221 234799999999965433

Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....

>KOG0941|consensus

Probab=99.90  E-value=2.3e-24  Score=198.58  Aligned_cols=127  Identities=21%  Similarity=0.259  Sum_probs=112.1

Q ss_pred             CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      ..+|++|++||++||+.|+..+.|++|.|+||+.||||..+.|...++.+|.|+|+|..+    |+.|+|||++++.|+.
T Consensus       699 n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~~~----~~~I~~FWe~~~~~~~  774 (850)
T KOG0941|consen  699 NKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYTSD----SPTIQWFWEIFHAFTL  774 (850)
T ss_pred             hhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceecCcccCC----ChHHHHHHHHHHhCCH
Confidence            578999999999999999999999999999999999999999999999999999877554    7899999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCC
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGE  146 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~  146 (173)
                      ++|++||||.|    ++++||..++..+     ++.|+-.+...-.+|.+|||||-...+
T Consensus       775 ~~kkkfL~F~T----GsdRipv~G~~~l-----~~~i~~~~~~~~~lP~shTCfN~L~Lp  825 (850)
T KOG0941|consen  775 EEKKKFLQFLT----GSDRIPVGGLAKL-----KLVIQKNGPDEDRLPVSHTCFNVLLLP  825 (850)
T ss_pred             HHhhhheEeec----CCCccccCChhhc-----eEEEecCCCCcccCcchhhhhhhhhcc
Confidence            99999999999    6899999999765     445544333345799999999976544

>KOG0942|consensus

Probab=99.84  E-value=9e-22  Score=182.59  Aligned_cols=127  Identities=13%  Similarity=0.179  Sum_probs=110.6

Q ss_pred             cHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCC-CCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHH
Q psy12140          9 SWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVG-DINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL   87 (173)
Q Consensus         9 ~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~-~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~   87 (173)
                      ++.+|+.||++||..|||++||++|++.|||.||+|.+ .||++|||+||.|.|+|...    |++|..||+++++++.+
T Consensus       849 rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~----hp~Iv~FWeVl~~F~~e  924 (1001)
T KOG0942|consen  849 RIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPD----HPTIVMFWEVLEEFSDE  924 (1001)
T ss_pred             HHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCC----CCchhHHHHHHHhcchH
Confidence            57899999999999999999999999999999999976 69999999999998766543    78999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCC
Q psy12140         88 ERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGE  146 (173)
Q Consensus        88 ~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~  146 (173)
                      +|++||+|+|    .++..|..|++.++|. +.+...|.  .+-.+|+|.||-|=..-+
T Consensus       925 dKr~fLKFVT----scsRpPllGFK~L~P~-FcI~n~gs--d~~RLPTASTCmNLLKLP  976 (1001)
T KOG0942|consen  925 DKRKFLKFVT----SCSRPPLLGFKALDPA-FCIRNAGS--DDDRLPTASTCMNLLKLP  976 (1001)
T ss_pred             HHHHHHHHHh----cCCCcccccchhcCcc-ceeeeCCC--ccccCCcHHHHHHHhcCC
Confidence            9999999999    4666899999999986 66665654  334899999999844333

>KOG4427|consensus

Probab=99.81  E-value=7.1e-20  Score=167.61  Aligned_cols=131  Identities=20%  Similarity=0.281  Sum_probs=106.6

Q ss_pred             cHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcC-CCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHh-hcH
Q psy12140          9 SWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNG-VGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEK-MTH   86 (173)
Q Consensus         9 ~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G-~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~-~~~   86 (173)
                      .+.+|..||.+||.++|.++||++|+|.||+.||+| ..+||++|+|+||.|-|++.++    |++|.|+|+++.. |++
T Consensus       919 qi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~s----hrvIkwlWdIl~~dFt~  994 (1096)
T KOG4427|consen  919 QIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDS----HRVIKWLWDILAGDFTP  994 (1096)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCc----chhHHHHHHHHhccCCh
Confidence            478999999999999999999999999999999999 5799999999999999888765    7899999999996 999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhhHh-----------------hhcC-----CCCCchhhhhhcceecCCC
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRL-----------------LLNG-----VGDINVTVLISYTSFIDES  144 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~l-----------------li~G-----~~~id~~~lkahT~y~~~~  144 (173)
                      ++|..||+|+|.    ++..|.-|++.+.|. |-+                 ++.|     .+.---.+|.+.||||-..
T Consensus       995 eERklfLKFVTS----CSrpPlLGFayLePp-FsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLK 1069 (1096)
T KOG4427|consen  995 EERKLFLKFVTS----CSRPPLLGFAYLEPP-FSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLK 1069 (1096)
T ss_pred             HHHHHHHHHHhh----cCCCccccccccCCC-ceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhh
Confidence            999999999995    556788888777664 111                 1111     0111135889999999665


Q ss_pred             CCCh
Q psy12140        145 GEPS  148 (173)
Q Consensus       145 ~~~~  148 (173)
                      .+++
T Consensus      1070 LPnY 1073 (1096)
T KOG4427|consen 1070 LPNY 1073 (1096)
T ss_pred             CCCc
Confidence            5544

>KOG0939|consensus

Probab=99.77  E-value=2.5e-19  Score=162.87  Aligned_cols=98  Identities=20%  Similarity=0.396  Sum_probs=87.6

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|+++||+.+-++.  |+..+|.+   ..||..||+++||...++.|+..||++||||.++||++|||+||.|.++..
T Consensus       545 t~~nK~~yv~lv~q~r--L~~~ir~q---l~afl~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~~~~~  619 (720)
T KOG0939|consen  545 TEANKQEYVQLVTQYR--LTNSIRKQ---LDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYLGYTK  619 (720)
T ss_pred             ccccHHHHHHHHHHHH--HHhhHHHH---HHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhhcccc
Confidence            3468899999998766  88998885   678888999999999999999999999999999999999999999987543


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .     +++|+|||++|++|++++|+||
T Consensus       620 ~-----~~~i~wFWrav~sf~~eerakl  642 (720)
T KOG0939|consen  620 A-----SSVIQWFWRAVRSFDQEERAKL  642 (720)
T ss_pred             c-----chHHHHHHHHHhhhcHHHHHhh
Confidence            3     4689999999999999999986

>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with

Probab=99.75  E-value=3.3e-18  Score=147.38  Aligned_cols=99  Identities=27%  Similarity=0.427  Sum_probs=85.1

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|+++||+..-++.  +..+.+.   |+.+|++||++++|...++.|+|+||+.++||.++||+++|++||.|+++|.
T Consensus       166 t~~N~~eYv~~~~~~~--l~~~~~~---~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~  240 (336)
T smart00119      166 TEENKKEYVHLVIEYR--LNKGIEK---QLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYS  240 (336)
T ss_pred             CHHHHHHHHHHHHHHH--HhhhHHH---HHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCC
Confidence            4678899998775444  4444444   5889999999999999999999999999999999999999999999997665


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    ++.|+|||++|++||+++|++|
T Consensus       241 ~~----~~~i~~Fw~vl~~~s~ee~~~f  264 (336)
T smart00119      241 EN----SQTIKWFWEVVESFTNEERRKL  264 (336)
T ss_pred             CC----CHHHHHHHHHHHHCCHHHHHHh
Confidence            53    5789999999999999999975

E3 ubiquitin-protein ligases. Can bind to E2 enzymes.

>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

Probab=99.74  E-value=4.2e-18  Score=147.18  Aligned_cols=99  Identities=23%  Similarity=0.379  Sum_probs=85.4

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|+++||+..-++.  +..+.+.   |+.+|++||++++|...++.|+++||+.++||.+.||+++|++||.|++++.
T Consensus       184 T~~N~~eYv~~~~~~~--l~~~~~~---~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~id~~~l~~~~~y~~~~~  258 (352)
T cd00078         184 TNENKEEYVDLYVDYR--LNKGIEE---QVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKGGYS  258 (352)
T ss_pred             CHHHHHHHHHHHHHHH--hcchHHH---HHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCCCCHHHHHhceEecCCCC
Confidence            4578899998775444  5545444   5889999999999999999999999999999999999999999999998765


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    +++|+|||++|++||+++|++|
T Consensus       259 ~~----~~~i~~Fw~vl~~~s~eer~~f  282 (352)
T cd00078         259 SD----SPTIQWFWEVLESFTNEERKKF  282 (352)
T ss_pred             CC----CHHHHHHHHHHHhCCHHHHHHh
Confidence            32    5889999999999999999975

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.

>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.3e-18  Score=161.39  Aligned_cols=98  Identities=18%  Similarity=0.372  Sum_probs=82.0

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCC-CchhhhhhcceecCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISYTSFIDES  144 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~-id~~~lkahT~y~~~~  144 (173)
                      +.+|+++||...-++.  +...++.   ||.||..||+++||+.++.+|++.||++||||.++ ||+++||.||.|.| |
T Consensus       697 T~~Nk~eYV~~vvdy~--L~k~ie~---Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~G-Y  770 (872)
T COG5021         697 TNENKKEYVKKVVDYK--LNKRVEK---QFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYHG-Y  770 (872)
T ss_pred             cchHHHHHHHHHHHHH--hhhhHHH---HHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhcccccc-c
Confidence            3467777775552222  4455555   59999999999999999999999999999999998 99999999999976 4


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        145 GEPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       145 ~~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      ..+    +|+|.|||++|++|+.++|++|
T Consensus       771 ~~~----s~~I~wFWeii~~f~~eer~kl  795 (872)
T COG5021         771 TED----SPIIVWFWEIISEFDFEERAKL  795 (872)
T ss_pred             ccC----CcHHHHHHHHHHHhCHHHHhhh
Confidence            443    5889999999999999999986

>KOG0942|consensus

Probab=99.68  E-value=2.2e-17  Score=153.65  Aligned_cols=100  Identities=14%  Similarity=0.300  Sum_probs=87.8

Q ss_pred             CChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCC-CCCchhhhhhcceecCC
Q psy12140         65 EPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGV-GDINVTVLISYTSFIDE  143 (173)
Q Consensus        65 ~~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~-~~id~~~lkahT~y~~~  143 (173)
                      .+.+|+++||+..-++-  ++.++|+   |..||++|++.+||++|+++|++.|+++||+|. ..||++|+|+||.|-|+
T Consensus       829 VTneNvi~YihLVsnY~--LN~rir~---~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Gg  903 (1001)
T KOG0942|consen  829 VTNENVIEYIHLVSNYK--LNQRIRR---QCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGG  903 (1001)
T ss_pred             eechhhhhhhHHhhhhH--HHHHHHH---HHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCC
Confidence            35688999998875544  8888888   578999999999999999999999999999996 56999999999999877


Q ss_pred             CCCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        144 SGEPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       144 ~~~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      |.++    ||+|..||+|+++|+.|+|++|
T Consensus       904 y~~~----hp~Iv~FWeVl~~F~~edKr~f  929 (1001)
T KOG0942|consen  904 YSPD----HPTIVMFWEVLEEFSDEDKRKF  929 (1001)
T ss_pred             CCCC----CCchhHHHHHHHhcchHHHHHH
Confidence            6654    7999999999999999999875

>KOG0940|consensus

Probab=99.68  E-value=6e-17  Score=140.46  Aligned_cols=131  Identities=20%  Similarity=0.218  Sum_probs=109.9

Q ss_pred             CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHH
Q psy12140          8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL   87 (173)
Q Consensus         8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~   87 (173)
                      ..+++|..||.+||.+++|..+++.|++.|+++++||.++||++||+++|.|.+.+..     +.+|.|||+.+..|+++
T Consensus       211 ~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~~~~~~-----~~~i~wf~~~v~~~~~~  285 (358)
T KOG0940|consen  211 RGIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEIDVNDWKQNTEYRGYSET-----DRQIDWFWNNVDEMDNE  285 (358)
T ss_pred             HHHHHHHHHHhccccccCCcccccccchhhHHHHhcCCcccchhHHhhhcccccccCC-----ccccHHHHHhhhhcChH
Confidence            4688999999999999999999999999999999999999999999999999954322     67899999999999999


Q ss_pred             HHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCCh
Q psy12140         88 ERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPS  148 (173)
Q Consensus        88 ~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~  148 (173)
                      +|+++++|+|    ....+|..++..+....-  .+.|.+ ..-....|++|||||+...+..
T Consensus       286 ~r~r~l~~~t----g~~~vp~~~~~~l~~s~~~~~~~ie~-~~~~~~~p~~htcfnrld~~~~  343 (358)
T KOG0940|consen  286 ERIRLLQFVT----GTSRVPVEGFAILSGSNGPRKFCIEK-WGKSTQLPRSHTCFNRLDLPPY  343 (358)
T ss_pred             HHHhhhhccC----CCccccccchhhccCCCccCceeecC-cccccccchhcccccccccccc
Confidence            9999999999    577789999987765421  223444 2233479999999998765543

>KOG4427|consensus

Probab=99.65  E-value=2.2e-16  Score=144.97  Aligned_cols=98  Identities=20%  Similarity=0.332  Sum_probs=82.8

Q ss_pred             hhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCC-CCCchhhhhhcceecCCCC
Q psy12140         67 SERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGV-GDINVTVLISYTSFIDESG  145 (173)
Q Consensus        67 ~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~-~~id~~~lkahT~y~~~~~  145 (173)
                      .+|+-.||...-.  .+|+.+++.   |-.||.+||.++|.+.||++|.|+||+.||+|. .+||++|+|+||.|-||++
T Consensus       901 neNKi~YIH~MA~--~rmnrqi~e---qt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh  975 (1096)
T KOG4427|consen  901 NENKIQYIHAMAH--FRMNRQIVE---QTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFH  975 (1096)
T ss_pred             ccchHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccC
Confidence            4677777755432  247777776   577888899999999999999999999999995 7899999999999999887


Q ss_pred             CChhhHHHHHHHHHHHHhc-CCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEK-MTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~-~~~~~r~~l  173 (173)
                      .+    |++|+|||+|+++ |+++||+.|
T Consensus       976 ~s----hrvIkwlWdIl~~dFt~eERklf 1000 (1096)
T KOG4427|consen  976 DS----HRVIKWLWDILAGDFTPEERKLF 1000 (1096)
T ss_pred             Cc----chhHHHHHHHHhccCChHHHHHH
Confidence            65    7999999999986 999999753

>KOG0941|consensus

Probab=99.63  E-value=4.9e-16  Score=143.94  Aligned_cols=99  Identities=19%  Similarity=0.305  Sum_probs=88.1

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|.++||...-+++  ++..+++   ||.+|++||+.|+....++.|+|+|++.+|||+.+.|...++..|.|.|+|.
T Consensus       682 t~~Nr~efV~~Yvd~~--~n~sv~~---q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~  756 (850)
T KOG0941|consen  682 TNENRREFVNLYVDYI--LNKSVKK---QFEAFRRGFYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYT  756 (850)
T ss_pred             ccccHHHHHHHHHHHH--HhhhHHH---HHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceecCccc
Confidence            3467888887766665  7777777   6999999999999999999999999999999999999999999999998765


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    ||+|+|||+++++|+.++|++|
T Consensus       757 ~~----~~~I~~FWe~~~~~~~~~kkkf  780 (850)
T KOG0941|consen  757 SD----SPTIQWFWEIFHAFTLEEKKKF  780 (850)
T ss_pred             CC----ChHHHHHHHHHHhCCHHHhhhh
Confidence            54    7899999999999999999986

>KOG0943|consensus

Probab=99.62  E-value=1.4e-16  Score=151.14  Aligned_cols=129  Identities=33%  Similarity=0.522  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHHHH
Q psy12140         10 WVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLER   89 (173)
Q Consensus        10 v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~~r   89 (173)
                      -+..++|+|+|+.||||.+.|..+||++|.++|||..+++++.+..+|.|.++++...+...+|.+|||++|++|+.++|
T Consensus      2863 ~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~eeVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEk 2942 (3015)
T KOG0943|consen 2863 AEIPFEAIREGILDVIPENMLEDLTAEDFRLIICGCEEVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEK 2942 (3015)
T ss_pred             eeccHHHHHHhHHhhcchhhhcccCHhHheeeeecccceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34568999999999999999999999999999999999999999999999999998888889999999999999999999


Q ss_pred             HHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCC
Q psy12140         90 MDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGE  146 (173)
Q Consensus        90 ~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~  146 (173)
                      +.|.+|||    .+--+|...-. |.|. --++  -.+..|.-+|.++||-.+.|-+
T Consensus      2943 QdLVfFWT----gSPaLPAa~e~-~p~~-aSim--iRP~dD~fLPTANTCISRLYVP 2991 (3015)
T KOG0943|consen 2943 QDLVFFWT----GSPALPAAEEG-FPPM-ASIM--IRPPDDQFLPTANTCISRLYVP 2991 (3015)
T ss_pred             ccEEEEec----CCCCCCccccC-CCCC-Ccee--ecCcccccCCcccchhhheeee
Confidence            99999999    45556654322 2211 1122  2466788999999999988754

>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []

Probab=99.62  E-value=5.1e-16  Score=131.67  Aligned_cols=99  Identities=25%  Similarity=0.431  Sum_probs=79.3

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCC-CchhhhhhcceecCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISYTSFIDES  144 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~-id~~~lkahT~y~~~~  144 (173)
                      +.+|+.+||+..-++.  +....+.   ++.+|++||.+++|...++.|+++||+.++||.+. +|+++|++||.|.+++
T Consensus       144 t~~N~~eyv~~~~~~~--l~~~~~~---~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~  218 (317)
T PF00632_consen  144 TNENKEEYVRLLAQYR--LNESVKK---QLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGY  218 (317)
T ss_dssp             TTTTHHHHHHHHHHHH--HTTTTHH---HHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS
T ss_pred             chhhhhHHHHhhhhhh--cccccch---hHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhcc
Confidence            4568888887764333  4443333   47888999999999999999999999999999999 9999999999999665


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        145 GEPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       145 ~~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      ..+    +++|+|||++|++||+++|++|
T Consensus       219 ~~~----~~~i~~fw~vl~~~s~~~~~~f  243 (317)
T PF00632_consen  219 TES----SPVIQWFWEVLEEFSQEERRKF  243 (317)
T ss_dssp             -TT----SHHHHHHHHHHHHS-HHHHHHH
T ss_pred             ccc----cceeeEEeeeeccCCHHHhhee
Confidence            543    5889999999999999999875

Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....

>KOG0170|consensus

Probab=99.55  E-value=1.9e-14  Score=127.89  Aligned_cols=130  Identities=17%  Similarity=0.106  Sum_probs=107.4

Q ss_pred             CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCC-CCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVG-DINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~-~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      .+|++|++||+.||..|.|-+-|.+|+|+||..|+||.. .++++.+..|.++.++|.  .+  .+.|+.+-+++..|+.
T Consensus       462 kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT--~~--Sp~i~~li~ils~f~~  537 (621)
T KOG0170|consen  462 KGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYT--MD--SPIIHDLISILSAFDK  537 (621)
T ss_pred             hhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCcc--CC--CcHHHHHHHHhhhhch
Confidence            579999999999999999999999999999999999965 699999999999886553  33  5678888899999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhh-cC--CCCCchhhhhhcceecCCCCC
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLL-NG--VGDINVTVLISYTSFIDESGE  146 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli-~G--~~~id~~~lkahT~y~~~~~~  146 (173)
                      ++++.||||+|    ++..+|.++|+.++|. |-++. .+  ...-|-.+|.-.||-|-...+
T Consensus       538 ~qQR~FLQFvT----GSprLPiGGfasLNPk-lTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP  595 (621)
T KOG0170|consen  538 EQQRLFLQFVT----GSPRLPIGGFASLNPK-LTIVRKHAEDSETPDDYLPSVMTCANYLKLP  595 (621)
T ss_pred             HHHHHHHHHhc----CCCCCCCCcccccCCC-eEEEeccCCCCCCcccccchHHHHHhhhcCC
Confidence            99999999999    5778999999999986 43332 23  223456788999998843333

>KOG0943|consensus

Probab=99.31  E-value=1.2e-12  Score=124.83  Aligned_cols=80  Identities=49%  Similarity=0.946  Sum_probs=76.5

Q ss_pred             HHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140         94 CAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus        94 qf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      -|.++++|+.+|||...|..+++++|+++|||+.++++..+..+|-|+...+.+.+...++.+|||+||++|+..+|+.|
T Consensus      2866 ~feAiReGiLDViPenmL~~LT~EDfRLiicG~eeVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdL 2945 (3015)
T KOG0943|consen 2866 PFEAIREGILDVIPENMLEDLTAEDFRLIICGCEEVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDL 2945 (3015)
T ss_pred             cHHHHHHhHHhhcchhhhcccCHhHheeeeecccceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccE
Confidence            48999999999999999999999999999999999999999999999999999888888999999999999999999875

>KOG0940|consensus

Probab=99.08  E-value=2.5e-10  Score=99.30  Aligned_cols=97  Identities=23%  Similarity=0.327  Sum_probs=79.5

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|.+.||...-+   ++...+++   |+.|+.+||...+|....+.|++.+++.++||.+.+|+.+|++||.|.+++ 
T Consensus       194 ~~~n~~~yi~~l~~---r~~~~~~~---q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~~~~-  266 (358)
T KOG0940|consen  194 TEENKKEYIMLLQN---RFERGIQE---QLKALLQGFNELLPQSLLRIFDEMELELALSGDPEIDVNDWKQNTEYRGYS-  266 (358)
T ss_pred             ccccHHHHHHHHHH---HHHHHHHH---HHHHHhccccccCCcccccccchhhHHHHhcCCcccchhHHhhhccccccc-
Confidence            45677777755433   23333333   588889999999999999999999999999999999999999999998532 


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    |++|.|||+.++.+++++|+++
T Consensus       267 ~~----~~~i~wf~~~v~~~~~~~r~r~  290 (358)
T KOG0940|consen  267 ET----DRQIDWFWNNVDEMDNEERIRL  290 (358)
T ss_pred             CC----ccccHHHHHhhhhcChHHHHhh
Confidence            22    6899999999999999999874

>KOG0170|consensus

Probab=98.76  E-value=1.1e-08  Score=91.69  Aligned_cols=97  Identities=20%  Similarity=0.164  Sum_probs=79.8

Q ss_pred             hhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCC-CCchhhhhhcceecCCCCC
Q psy12140         68 ERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVG-DINVTVLISYTSFIDESGE  146 (173)
Q Consensus        68 e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~-~id~~~lkahT~y~~~~~~  146 (173)
                      .|+++||+..-.+.  +...+.+   |+.||++||.+|.|..-|..|+|+||.-++||.. .-++..+..|..+.+||.-
T Consensus       446 ~NleEYi~~VId~t--v~kGVqk---QleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT~  520 (621)
T KOG0170|consen  446 SNLEEYIHGVIDAT--VGKGVQK---QLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYTM  520 (621)
T ss_pred             ccHHHHHHHHHHHH--HhhhHHH---HHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCccC
Confidence            57888887764333  4555555   4899999999999999999999999999999964 4677888889999877655


Q ss_pred             ChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        147 PSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       147 ~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      +    +|+|+.|-+|+..|+.+||+.|
T Consensus       521 ~----Sp~i~~li~ils~f~~~qQR~F  543 (621)
T KOG0170|consen  521 D----SPIIHDLISILSAFDKEQQRLF  543 (621)
T ss_pred             C----CcHHHHHHHHhhhhchHHHHHH
Confidence            4    5889999999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
3pt3_A	118	Crystal Structure Of The C-Terminal Lobe Of The Hum		3e-11
3pt3_A	118	Crystal Structure Of The C-Terminal Lobe Of The Hum		3e-11

>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5 Hect Domain Length = 118

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 49 NVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
          +V +LIS+TSF DESGE +E+L++FKRW WSIVEKM+  ER DL
Sbjct: 5  SVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDL 48

>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5 Hect Domain Length = 118

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 130 NVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
           +V +LIS+TSF DESGE +E+L++FKRW WSIVEKM+  ER DL
Sbjct: 5   SVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDL 48

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
3pt3_A	118	E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed	8e-08
3pt3_A	118	E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed	8e-08
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	4e-06
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	4e-06
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	5e-06
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	5e-06
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	7e-06
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	7e-06
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	8e-06
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	8e-06
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	1e-05
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	2e-04
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	2e-04

>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118

 Score = 47.3 bits (113), Expect = 8e-08
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 47 DINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
            +V +LIS+TSF DESGE +E+L++FKRW WSIVEKM+  ER DL
Sbjct: 3  LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDL 48

>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118

 Score = 47.3 bits (113), Expect = 8e-08
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 128 DINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
             +V +LIS+TSF DESGE +E+L++FKRW WSIVEKM+  ER DL
Sbjct: 3   LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDL 48

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A   G  +++P   ++     +  LL+ G+GD++V     ++ + +    P+  +I+   
Sbjct: 251 AFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGY-CPNHPVIQ--- 306

Query: 76  WLWSIVEKMTHLERMDL 92
           W W  V  M   +R+ L
Sbjct: 307 WFWKAVLLMDAEKRIRL 323

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A   G  +++P   ++     +  LL+ G+GD++V     ++ + +    P+  +I+   
Sbjct: 251 AFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGY-CPNHPVIQ--- 306

Query: 157 WLWSIVEKMTHLERMDL 173
           W W  V  M   +R+ L
Sbjct: 307 WFWKAVLLMDAEKRIRL 323

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A   G  +VVP   L+    ++  ++L G+ ++++      T +   +   + + I    
Sbjct: 232 AFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYT--RNSKQII--- 286

Query: 76  WLWSIVEKMTHLERMDL 92
           W W  V++  +  RM L
Sbjct: 287 WFWQFVKETDNEVRMRL 303

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A   G  +VVP   L+    ++  ++L G+ ++++      T +   +   + + I    
Sbjct: 232 AFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYT--RNSKQII--- 286

Query: 157 WLWSIVEKMTHLERMDL 173
           W W  V++  +  RM L
Sbjct: 287 WFWQFVKETDNEVRMRL 303

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A   G ++++P   +   T ++  LL++G+  I++  L S T +       +   I+   
Sbjct: 256 AFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQ--SNSIQIQ--- 310

Query: 76  WLWSIVEKMTHLERMDL 92
           W W  +      +R   
Sbjct: 311 WFWRALRSFDQADRAKF 327

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A   G ++++P   +   T ++  LL++G+  I++  L S T +       +   I+   
Sbjct: 256 AFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQ--SNSIQIQ--- 310

Query: 157 WLWSIVEKMTHLERMDL 173
           W W  +      +R   
Sbjct: 311 WFWRALRSFDQADRAKF 327

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A   G  +++P   +      +  LL+ G+ +I++     +T +       S+ +I+   
Sbjct: 282 AFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQ--ESDEVIQ--- 336

Query: 76  WLWSIVEKMTHLERMDL 92
           W W  V +  + +R  L
Sbjct: 337 WFWKCVSEWDNEQRARL 353

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A   G  +++P   +      +  LL+ G+ +I++     +T +       S+ +I+   
Sbjct: 282 AFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQ--ESDEVIQ--- 336

Query: 157 WLWSIVEKMTHLERMDL 173
           W W  V +  + +R  L
Sbjct: 337 WFWKCVSEWDNEQRARL 353

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A++ G  +V+P   L+    ++  L++ G+G I+V      T    +   P   ++K   
Sbjct: 232 ALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRL--KHCTPDSNIVK--- 286

Query: 76  WLWSIVEKMTHLERMDL 92
           W W  VE      R  L
Sbjct: 287 WFWKAVEFFDEERRARL 303

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A++ G  +V+P   L+    ++  L++ G+G I+V      T    +   P   ++K   
Sbjct: 232 ALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRL--KHCTPDSNIVK--- 286

Query: 157 WLWSIVEKMTHLERMDL 173
           W W  VE      R  L
Sbjct: 287 WFWKAVEFFDEERRARL 303

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 33/188 (17%)

Query: 12  NTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLI 71
              W +     +  P + LE L  +     ++           +    I        RL+
Sbjct: 183 KIFW-LNLKNCNS-PETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 72  KFKRWLWSI-----VEKMTHLERMDLGCAIAI--R-AGIFDVVPASCLENLTPEDFRLLL 123
           K K +   +     V+        +L C I +  R   + D + A+   +++ +   + L
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 124 NGVGDINVTVLISYTSFIDESGEPSE------------------RLIKFKRWLWSIVEKM 165
               D   ++L+ Y         P E                   L  +  W     +K+
Sbjct: 299 T--PDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 166 THLERMDL 173
           T +    L
Sbjct: 356 TTIIESSL 363

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 67/210 (31%)

Query: 28  SCLENLTPEDFRLLLNGVG----DINVT--VLISYTSFIDESGEPSERLIKFKRWLWSIV 81
           S L  L P ++R + + +       ++   +L      + +S +    + K  ++  S+V
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-DVMVVVNKLHKY--SLV 417

Query: 82  EK----MT---HLERMDLGCAIAIRAGI-------FDVVPASCLENLTPE---------- 117
           EK     T       ++L   +     +       +++      ++L P           
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 118 ---------------------DFRLL----------LNGVGDIN--VTVLISYTSFIDES 144
                                DFR L           N  G I   +  L  Y  +I ++
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 145 GEPSERLIK-FKRWLWSIVEKMTHLERMDL 173
               ERL+     +L  I E +   +  DL
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDL 567

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 16  AIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFK 74
           A R G   V   S L+ L  PE+  LL+ G  +++   L   T + D        LI   
Sbjct: 215 AFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY-DGGYTRDSVLI--- 270

Query: 75  RWLWSIVEKMTHLER 89
           R  W IV   T  ++
Sbjct: 271 REFWEIVHSFTDEQK 285

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 97  AIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFK 155
           A R G   V   S L+ L  PE+  LL+ G  +++   L   T + D        LI   
Sbjct: 215 AFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY-DGGYTRDSVLI--- 270

Query: 156 RWLWSIVEKMTHLER 170
           R  W IV   T  ++
Sbjct: 271 REFWEIVHSFTDEQK 285

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	99.97
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	99.97
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	99.96
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	99.96
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	99.96
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	99.96
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	99.83
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	99.82
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	99.81
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	99.81
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	99.81
3pt3_A	118	E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed	99.81
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	99.79
3pt3_A	118	E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed	99.36

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A

Probab=99.97  E-value=6.5e-31  Score=229.07  Aligned_cols=147  Identities=17%  Similarity=0.211  Sum_probs=117.5

Q ss_pred             CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      ..+|++|++||++||++|||.++|++|+|+||++|+||.++||++||++||.|.++|..+    ++.|+|||+++++|++
T Consensus       242 ~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~----~~~i~~FW~vv~~~s~  317 (392)
T 2oni_A          242 VNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPN----HPVIQWFWKAVLLMDA  317 (392)
T ss_dssp             TTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTT----CHHHHHHHHHHHHSCH
T ss_pred             hhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCC----CchheeHHHHHHhCCH
Confidence            367899999999999999999999999999999999999999999999999999766543    6789999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHH
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIV  162 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv  162 (173)
                      ++|++||||+|    +++.+|..+++.+.+..-  .+.|...+. +-.+|+||||||...-+.+.....+.+-+.-++
T Consensus       318 eer~~fL~FvT----Gs~rlP~~Gf~~L~~~~gp~~f~I~~~~~-~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~AI  390 (392)
T 2oni_A          318 EKRIRLLQFVT----GTSRVPMNGFAELYGSNGPQLFTIEQWGS-PEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV  390 (392)
T ss_dssp             HHHHHHHHHHH----SCSCCCTTCGGGCEETTEECCCEEEECSC-TTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----CCCCCCCcchhhhcccCCCCceEEEeCCC-CCcCcEEEcccCEeECCCCCCHHHHHHHHHHHH
Confidence            99999999999    578899999987753210  122332222 237999999999765554433345555555444

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A

Probab=99.97  E-value=9.9e-31  Score=226.68  Aligned_cols=146  Identities=18%  Similarity=0.237  Sum_probs=118.4

Q ss_pred             CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHH
Q psy12140          8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL   87 (173)
Q Consensus         8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~   87 (173)
                      .+|++|++||++||++|||.++|++|+|+||++||||.++||++||++||.|.| +..+    ++.|+|||++|++|+++
T Consensus       224 ~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~~~----~~~i~~FW~vv~~~~~e  298 (374)
T 1nd7_A          224 RGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH-YTRN----SKQIIWFWQFVKETDNE  298 (374)
T ss_dssp             TTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEES-CCTT----SHHHHHHHHHHHHSCHH
T ss_pred             ccHHHHHHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEcC-CCCC----CcceeeHHHHHHhcCHH
Confidence            478999999999999999999999999999999999999999999999999997 4332    67899999999999999


Q ss_pred             HHHHHHHHHHHhhccccccCchhccCCChhh--hHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140         88 ERMDLGCAIAIRAGIFDVVPASCLENLTPED--FRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE  163 (173)
Q Consensus        88 ~r~~llqf~t~~~Gf~~viP~~~l~~f~~~e--l~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~  163 (173)
                      +|++||||+|    +++.+|.++++.+.+..  ..+.|...+. |-.+|+||||||...-+.+.....+.+-+.-+++
T Consensus       299 er~~fL~FvT----Gs~rlP~~Gf~~L~~~~gp~~f~I~~~~~-~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~  371 (374)
T 1nd7_A          299 VRMRLLQFVT----GTCRLPLGGFAELMGSNGPQKFCIEKVGK-DTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIE  371 (374)
T ss_dssp             HHHHHHHHHH----SCSCCCTTCGGGCEETTEECCEEEECCSC-TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh----CCCCCCCcchhhccccCCCCceEEEeCCC-CCcCCEEEcccCEEECCCCCCHHHHHHHHHHHHH
Confidence            9999999999    57889999998875321  1233333322 4479999999997765554433455555655554

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.5e-30  Score=225.90  Aligned_cols=147  Identities=18%  Similarity=0.258  Sum_probs=119.2

Q ss_pred             CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHH
Q psy12140          8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL   87 (173)
Q Consensus         8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~   87 (173)
                      .+|++|++||++||++|||.++|++|+|+||++|+||.++||++||++||.|.| +..  +  ++.|+|||+++++|+++
T Consensus       224 ~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~~--~--~~~i~~FW~vv~~~s~e  298 (380)
T 1zvd_A          224 RGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKH-CTP--D--SNIVKWFWKAVEFFDEE  298 (380)
T ss_dssp             TTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEES-SCT--T--SHHHHHHHHHHHHSCHH
T ss_pred             HhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEecC-CCC--C--cchhhhHHHHHHhCCHH
Confidence            579999999999999999999999999999999999999999999999999985 322  2  67899999999999999


Q ss_pred             HHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140         88 ERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE  163 (173)
Q Consensus        88 ~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~  163 (173)
                      +|++||||+|    +++.+|..+++.+.+..-  .+.|.-.+.-+-.+|+||||||...-+.+.....+.+-+.-+++
T Consensus       299 er~~fL~FvT----Gs~rlP~~Gf~~L~~~~gp~~f~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~  372 (380)
T 1zvd_A          299 RRARLLQFVT----GSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIE  372 (380)
T ss_dssp             HHHHHHHHHH----SCSSBCTTCGGGCEETTEECCEEEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHh----CCCCCCCcchhhccccCCCCceEEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHH
Confidence            9999999999    578899999988864221  12233222334579999999997765544433566666666665

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A

Probab=99.96  E-value=2.3e-30  Score=226.42  Aligned_cols=148  Identities=16%  Similarity=0.238  Sum_probs=120.1

Q ss_pred             CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      ..+|++|++||++||++|||.++|++|+|+||++|+||.++||++||++||.|.| |..    .++.|+|||+++++|+.
T Consensus       247 ~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~g-y~~----~~~~i~~FW~v~~~~s~  321 (405)
T 3h1d_A          247 TGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHK-YQS----NSIQIQWFWRALRSFDQ  321 (405)
T ss_dssp             TGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEES-SCT----TCHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCcccC-CCC----CCchHhhHHHHHHhCCH
Confidence            3589999999999999999999999999999999999999999999999999985 322    26789999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE  163 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~  163 (173)
                      ++|++||+|+|    +++.+|..+++.+.|...  .+.|...+.-+-.+|+||||||...-+.+.....+.+-++.+++
T Consensus       322 eer~~fL~FvT----Gs~rlP~~Gf~~L~~~~~~~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~  396 (405)
T 3h1d_A          322 ADRAKFLQFVT----GTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQ  396 (405)
T ss_dssp             HHHHHHHHHHH----SSSCCCTTCGGGCBCSSSBCCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc----CCCCCCCCccccccccCCCceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHHHHH
Confidence            99999999999    578899999987765211  12232222234579999999997655444434567777777775

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-29  Score=222.47  Aligned_cols=147  Identities=18%  Similarity=0.218  Sum_probs=120.7

Q ss_pred             CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      ..+|++|++||++||++|||.++|++|+|+||++|+||.++||++||++||.|.| +..    .++.|+|||+++++|+.
T Consensus       273 ~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~G-y~~----~~~~I~~FW~vv~~~s~  347 (429)
T 3olm_A          273 VDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRG-YQE----SDEVIQWFWKCVSEWDN  347 (429)
T ss_dssp             TTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHHHHHTEEEES-CCT----TSHHHHHHHHHHHHSCH
T ss_pred             HHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHHHHHhccccC-CCC----CchHHHHHHHHHHhCCH
Confidence            3579999999999999999999999999999999999999999999999999985 332    26889999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE  163 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~  163 (173)
                      ++|++||+|+|    +++.+|..+++.+.+...  .+.|...++ +-.+|+||||||...-+.+...+.+.+-+..+++
T Consensus       348 eer~~fL~FvT----Gs~rlP~~Gf~~L~~~~g~~~f~I~~~~~-~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~AI~  421 (429)
T 3olm_A          348 EQRARLLQFTT----GTSRIPVNGFKDLQGSDGPRRFTIEKAGE-VQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVE  421 (429)
T ss_dssp             HHHHHHHHHHH----SCSCBCTTCGGGCEETTEECCEEEECCSC-TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhc----CCCCCCCcccccccCcCCCceEEEeeCCC-CCCCCccccccCEeECCCCCCHHHHHHHHHHHHH
Confidence            99999999999    578899999988865321  233433333 4479999999997766554444566777776665

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A

Probab=99.96  E-value=1.9e-30  Score=223.78  Aligned_cols=143  Identities=21%  Similarity=0.179  Sum_probs=115.8

Q ss_pred             CcHHHHHHHHHHhhhccCChhhhc-CCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          8 GSWVNTHWAIRAGIFDVVPASCLE-NLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         8 ~~v~~q~~af~~Gf~~vip~~~L~-~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      .+|++|++||++||++|||.++|. +|+|+||++|+||.++||++||++||+|.+++..+    ++.|+|||+++++|++
T Consensus       207 ~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy~~~----~~~i~~FW~vv~~~~~  282 (358)
T 1c4z_A          207 KSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRD----SVLIREFWEIVHSFTD  282 (358)
T ss_dssp             STTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSS----CHHHHHHHHHHHTSCH
T ss_pred             ccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhhcccCCCHHHHHHHceeCCCCCCC----cchhhhHHHHHHhCCH
Confidence            578999999999999999999886 89999999999999999999999999999766543    6789999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE  163 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~  163 (173)
                      ++|++||||+|    +++.+|..+++.+.     +.|.-.+.-+-.+|+||||||...-+.+.....+.+-+..+++
T Consensus       283 eer~~fL~FvT----Gs~rlP~~Gf~~l~-----~~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~  350 (358)
T 1c4z_A          283 EQKRLFLQFTT----GTDRAPVGGLGKLK-----MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAIT  350 (358)
T ss_dssp             HHHHHHHHHHS----SSSSBCTTCGGGGC-----CEEEEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc----CCCCCCCCCcccce-----eeeecCCCCCCCCeEEEccCCEeECCCCCCHHHHHHHHHHHHH
Confidence            99999999999    57889999987652     3333222123479999999997654433333456666666654

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A

Probab=99.83  E-value=3.4e-21  Score=167.80  Aligned_cols=99  Identities=16%  Similarity=0.293  Sum_probs=85.6

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|+++||+..-++.  +..+++.   |+.+|++||++|||..+|+.|+++||+.+|||.++||+++|++||.|.++|.
T Consensus       225 T~~N~~eYv~l~~~~~--l~~~i~~---q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~  299 (392)
T 2oni_A          225 TNENKREYIDLVIQWR--FVNRVQK---QMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYC  299 (392)
T ss_dssp             CTTTHHHHHHHHHHHH--HTTTSHH---HHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCC
T ss_pred             chhhHHHHHHHHHHHH--HhhhHHH---HHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCC
Confidence            4578888987764444  5555554   5899999999999999999999999999999999999999999999998766


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    |++|+|||+||++||+++|++|
T Consensus       300 ~~----~~~i~~FW~vv~~~s~eer~~f  323 (392)
T 2oni_A          300 PN----HPVIQWFWKAVLLMDAEKRIRL  323 (392)
T ss_dssp             TT----CHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CC----CchheeHHHHHHhCCHHHHHHH
Confidence            54    5889999999999999999875

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A

Probab=99.82  E-value=6.8e-21  Score=164.95  Aligned_cols=98  Identities=17%  Similarity=0.276  Sum_probs=83.4

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|+++||+..-++.  |...++.   |+.+|++||+++||..+|+.|+|+||+++|||.++||+++|++||.|+| |.
T Consensus       206 T~~N~~eYv~l~~~~~--l~~~i~~---q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~  279 (374)
T 1nd7_A          206 TEENKDEYIGLMTEWR--FSRGVQE---QTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH-YT  279 (374)
T ss_dssp             CTTTHHHHHHHHHHHH--HHTTTHH---HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEES-CC
T ss_pred             ccccHHHHHHHHHHHH--HhccHHH---HHHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEcC-CC
Confidence            4578888887764433  4444444   4899999999999999999999999999999999999999999999987 54


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    |++|+|||+||++||+++|++|
T Consensus       280 ~~----~~~i~~FW~vv~~~~~eer~~f  303 (374)
T 1nd7_A          280 RN----SKQIIWFWQFVKETDNEVRMRL  303 (374)
T ss_dssp             TT----SHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CC----CcceeeHHHHHHhcCHHHHHHH
Confidence            43    6899999999999999999875

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}

Probab=99.81  E-value=1.4e-20  Score=163.36  Aligned_cols=98  Identities=19%  Similarity=0.343  Sum_probs=84.0

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|+++||+..-++.  +...++.   |+.+|++||++|||..+|+.|+++||+++|||.++||+++|++||.|.| |.
T Consensus       206 T~~N~~eYv~l~~~~~--l~~~i~~---q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~  279 (380)
T 1zvd_A          206 NEENKKEYVRLYVNWR--FLRGIEA---QFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKH-CT  279 (380)
T ss_dssp             TTTTHHHHHHHHHHHH--HTTTTHH---HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEES-SC
T ss_pred             ccccHHHHHHHHHHHH--HHHhHHH---HHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEecC-CC
Confidence            4578889987764444  5555555   5899999999999999999999999999999999999999999999985 43


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    |++|+|||+||++||+++|++|
T Consensus       280 ~~----~~~i~~FW~vv~~~s~eer~~f  303 (380)
T 1zvd_A          280 PD----SNIVKWFWKAVEFFDEERRARL  303 (380)
T ss_dssp             TT----SHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CC----cchhhhHHHHHHhCCHHHHHHH
Confidence            32    6899999999999999999875

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A

Probab=99.81  E-value=8.8e-21  Score=163.44  Aligned_cols=99  Identities=20%  Similarity=0.256  Sum_probs=84.8

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhcc-CCChhhhHhhhcCCCCCchhhhhhcceecCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLE-NLTPEDFRLLLNGVGDINVTVLISYTSFIDES  144 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~-~f~~~el~lli~G~~~id~~~lkahT~y~~~~  144 (173)
                      +.+|+++||+..-++.  |...++.   |+.+|++||++++|...|. .|+|+||+++|||.++||+++|++||.|.++|
T Consensus       189 T~~N~~eYv~l~~~~~--l~~~i~~---q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy  263 (358)
T 1c4z_A          189 TNENRKEFVNLYSDYI--LNKSVEK---QFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGY  263 (358)
T ss_dssp             CTTTHHHHHHHHHHHH--HTSTTHH---HHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSC
T ss_pred             ccccHHHHHHHHHHHH--hcccHHH---HHHHHHHHHHHhcCcchhhcCCCHHHHHHHhhcccCCCHHHHHHHceeCCCC
Confidence            4578888887765444  5555555   5899999999999999886 89999999999999999999999999999776


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        145 GEPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       145 ~~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      ..+    |++|+|||++|++||+++|++|
T Consensus       264 ~~~----~~~i~~FW~vv~~~~~eer~~f  288 (358)
T 1c4z_A          264 TRD----SVLIREFWEIVHSFTDEQKRLF  288 (358)
T ss_dssp             CSS----CHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCC----cchhhhHHHHHHhCCHHHHHHH
Confidence            554    5889999999999999999875

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A

Probab=99.81  E-value=1.2e-20  Score=164.88  Aligned_cols=98  Identities=18%  Similarity=0.379  Sum_probs=84.8

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|+++||+..-++.  |..+++.   |+.+|++||++|||..+|+.|+|+||+.+|||.++||+++|++||.|.| |.
T Consensus       230 T~~Nk~eYV~l~~~~~--l~~~v~~---q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~g-y~  303 (405)
T 3h1d_A          230 TEENKKEYVHLVCQMR--MTGAIRK---QLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHK-YQ  303 (405)
T ss_dssp             CTTTHHHHHHHHHHHH--HTGGGHH---HHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEES-SC
T ss_pred             chHhHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCcccC-CC
Confidence            4578889988775544  6666555   5899999999999999999999999999999999999999999999985 43


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    |++|+|||++|++||+++|++|
T Consensus       304 ~~----~~~i~~FW~v~~~~s~eer~~f  327 (405)
T 3h1d_A          304 SN----SIQIQWFWRALRSFDQADRAKF  327 (405)
T ss_dssp             TT----CHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CC----CchHhhHHHHHHhCCHHHHHHH
Confidence            32    6899999999999999999875

>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}

Probab=99.81  E-value=7.3e-21  Score=140.63  Aligned_cols=108  Identities=31%  Similarity=0.391  Sum_probs=68.0

Q ss_pred             CCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCc--hhccCCChhhhHhhh
Q psy12140         46 GDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPA--SCLENLTPEDFRLLL  123 (173)
Q Consensus        46 ~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~--~~l~~f~~~el~lli  123 (173)
                      |-|||+|||+||+|.|++..+++..|++|+|||+++++|+.++|++||+|+|    .++.+|.  .+++.+.    .+.|
T Consensus         2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvT----Gs~rlP~~~~Gf~~l~----~~~i   73 (118)
T 3pt3_A            2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWT----SSPSLPASEEGFQPMP----SITI   73 (118)
T ss_dssp             ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH----SCC------------C----EEEE
T ss_pred             CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhc----CCCCCCCcccCcccCC----cEEE
Confidence            5699999999999999887766667799999999999999999999999999    5788999  6887652    2334


Q ss_pred             cCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140        124 NGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE  163 (173)
Q Consensus       124 ~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~  163 (173)
                      .+  .-+-.+|+||||||...-+.+...+.+.+-++.+++
T Consensus        74 ~~--~~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~  111 (118)
T 3pt3_A           74 RP--PDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIK  111 (118)
T ss_dssp             ES--CCTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC
T ss_pred             EC--CCCCCCccceehhceeECCCCCCHHHHHHHHHHHHH
Confidence            43  234579999999997654443333567777777765

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.7e-20  Score=161.25  Aligned_cols=98  Identities=14%  Similarity=0.279  Sum_probs=84.3

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|+++||+..-++.  |...++.   |+.+|++||++|||..+|+.|+++||+.+|||.++||+++|++||.|.| |.
T Consensus       256 T~~Nk~eYV~l~~~~~--l~~~v~~---q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~G-y~  329 (429)
T 3olm_A          256 TDGNKKEYVELYTQWR--IVDRVQE---QFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRG-YQ  329 (429)
T ss_dssp             CTTTHHHHHHHHHHHH--HTTTTHH---HHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHHHHHTEEEES-CC
T ss_pred             CchhHHHHHHHHHHHH--HHHhHHH---HHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHHHHHhccccC-CC
Confidence            4578888988775544  5555555   5899999999999999999999999999999999999999999999985 44


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    |++|+|||+||++||+++|++|
T Consensus       330 ~~----~~~I~~FW~vv~~~s~eer~~f  353 (429)
T 3olm_A          330 ES----DEVIQWFWKCVSEWDNEQRARL  353 (429)
T ss_dssp             TT----SHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CC----chHHHHHHHHHHhCCHHHHHHH
Confidence            32    6899999999999999999875

>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}

Probab=99.36  E-value=2.5e-13  Score=100.18  Aligned_cols=47  Identities=62%  Similarity=0.967  Sum_probs=33.7

Q ss_pred             CCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        127 GDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       127 ~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      |-||+++||+||.|.+++..+++..|++|+|||++|++||+++|++|
T Consensus         2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~f   48 (118)
T 3pt3_A            2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDL   48 (118)
T ss_dssp             ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHH
Confidence            56999999999999998888776778999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1c4za_	350	d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap)	2e-04
d1c4za_	350	d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap)	8e-04

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 14  HWAIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIK 72
             A R G   V   S L+ L  PE+  LL+ G  +++   L   T +       S     
Sbjct: 211 FKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDS----V 266

Query: 73  FKRWLWSIVEKMTHLERMDL 92
             R  W IV   T  ++   
Sbjct: 267 LIREFWEIVHSFTDEQKRLF 286

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 8e-04
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 97  AIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFK 155
           A R G   V   S L+ L  PE+  LL+ G  +++   L   T +       S       
Sbjct: 213 AFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDS----VLI 268

Query: 156 RWLWSIVEKMTHLERMDL 173
           R  W IV   T  ++   
Sbjct: 269 REFWEIVHSFTDEQKRLF 286

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1nd7a_	374	WW domain-containing protein 1, WWP1 {Human (Homo	99.93
d1c4za_	350	Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s	99.92
d1nd7a_	374	WW domain-containing protein 1, WWP1 {Human (Homo	99.68
d1c4za_	350	Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s	99.67

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-26  Score=197.14  Aligned_cols=146  Identities=18%  Similarity=0.229  Sum_probs=115.9

Q ss_pred             CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHH
Q psy12140          8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL   87 (173)
Q Consensus         8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~   87 (173)
                      ++++.|++||++||++|||.++|++|+|+||+.|+||.++||+++|+++|.|.+. ..+    ++.|+|||++++.|+++
T Consensus       224 ~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~gy-~~~----s~~i~~fw~vl~~~t~e  298 (374)
T d1nd7a_         224 RGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHY-TRN----SKQIIWFWQFVKETDNE  298 (374)
T ss_dssp             TTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESC-CTT----SHHHHHHHHHHHHSCHH
T ss_pred             ccHHHHHHHHHHhHHHhCCHHHHhhCCHHHHHHhhCCCCCCCHHHHhhheeeccC-CCC----CHHHHHHHHHHHhcCHH
Confidence            5689999999999999999999999999999999999999999999999999853 222    57899999999999999


Q ss_pred             HHHHHHHHHHHhhccccccCchhccCCChhh--hHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140         88 ERMDLGCAIAIRAGIFDVVPASCLENLTPED--FRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE  163 (173)
Q Consensus        88 ~r~~llqf~t~~~Gf~~viP~~~l~~f~~~e--l~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~  163 (173)
                      +|++||+|+|    +++.+|.+|++.+.+..  ..+.+...+ -|-.+|.||||||...-+.+.....+.+-+.-+++
T Consensus       299 e~~~fL~FvT----Gs~rlP~~G~~~l~~~~~~~~~~i~~~~-~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~  371 (374)
T d1nd7a_         299 VRMRLLQFVT----GTCRLPLGGFAELMGSNGPQKFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIE  371 (374)
T ss_dssp             HHHHHHHHHH----SCSCCCTTCGGGCEETTEECCEEEECCS-CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHH
T ss_pred             HHHHhheeec----CCCCCCCcchhhhcccCCCCceeeccCC-CCCCCCchhhhhcEeeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999    58889999998775432  123333222 23479999999997655544333455555554443

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.4e-27  Score=197.63  Aligned_cols=142  Identities=22%  Similarity=0.172  Sum_probs=111.5

Q ss_pred             CcHHHHHHHHHHhhhccCChhhhc-CCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140          8 GSWVNTHWAIRAGIFDVVPASCLE-NLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH   86 (173)
Q Consensus         8 ~~v~~q~~af~~Gf~~vip~~~L~-~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~   86 (173)
                      ++++.|++||++||++|||.++|+ +|+|+||++++||.++||+++|+++|+|.+++..+    +..|+|||+++++|++
T Consensus       205 ~~~~~~~~afr~Gf~~vip~~~l~~lf~~~eL~~li~G~~~i~~~~L~~~~~y~~g~~~~----~~~i~~fw~vl~~~t~  280 (350)
T d1c4za_         205 KSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRD----SVLIREFWEIVHSFTD  280 (350)
T ss_dssp             STTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSS----CHHHHHHHHHHHTSCH
T ss_pred             hhhHHHHHHHHHhHHHhcCchhhhhcCCHHHHHHhhCCCCcccHHHHHhhCcccCCCCCc----cHHHHHHHHHHHhCCH
Confidence            578999999999999999999985 78999999999999999999999999999765543    6789999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHH
Q psy12140         87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIV  162 (173)
Q Consensus        87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv  162 (173)
                      ++|++||+|+|    +++.+|.++++.+.   +.+...+.  .+-.+|+||||||...-+.+.....+.+-+..++
T Consensus       281 eer~~fL~F~T----G~~rlP~~G~~~l~---~~i~~~~~--~~~~LP~a~TCf~~L~LP~Y~s~e~l~~kL~~AI  347 (350)
T d1c4za_         281 EQKRLFLQFTT----GTDRAPVGGLGKLK---MIIAKNGP--DTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAI  347 (350)
T ss_dssp             HHHHHHHHHHS----SSSSBCTTCGGGGC---CEEEEEEE--SCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHhhEEeC----CCCCCCCCCcccce---eEEEeCCC--CCCCCChHhhhhceEECCCCCCHHHHHHHHHHHH
Confidence            99999999999    57789999887652   22222222  2236999999999765433222234444444433

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-17  Score=141.10  Aligned_cols=98  Identities=17%  Similarity=0.276  Sum_probs=81.3

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG  145 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~  145 (173)
                      +.+|+++||+..-++.  +..+.+.   |+.+|++||++++|...++.|+|+||+.++||.+.+|+++|++||.|++ |.
T Consensus       206 T~~N~~~yv~~~~~~~--l~~~~~~---~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~g-y~  279 (374)
T d1nd7a_         206 TEENKDEYIGLMTEWR--FSRGVQE---QTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH-YT  279 (374)
T ss_dssp             CTTTHHHHHHHHHHHH--HHTTTHH---HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEES-CC
T ss_pred             hHHHHHHHHHHHHHHH--HhccHHH---HHHHHHHhHHHhCCHHHHhhCCHHHHHHhhCCCCCCCHHHHhhheeecc-CC
Confidence            4578888887664433  3333333   4889999999999999999999999999999999999999999999985 33


Q ss_pred             CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        146 EPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      .+    |+.|+|||++|++||+++|++|
T Consensus       280 ~~----s~~i~~fw~vl~~~t~ee~~~f  303 (374)
T d1nd7a_         280 RN----SKQIIWFWQFVKETDNEVRMRL  303 (374)
T ss_dssp             TT----SHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CC----CHHHHHHHHHHHhcCHHHHHHh
Confidence            32    5789999999999999999874

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-17  Score=140.26  Aligned_cols=99  Identities=20%  Similarity=0.256  Sum_probs=82.3

Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhcc-CCChhhhHhhhcCCCCCchhhhhhcceecCCC
Q psy12140         66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLE-NLTPEDFRLLLNGVGDINVTVLISYTSFIDES  144 (173)
Q Consensus        66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~-~f~~~el~lli~G~~~id~~~lkahT~y~~~~  144 (173)
                      +.+|+++||+-.-++.  +....+.   |+.+|++||++++|...+. .|+|+||+.++||.+.+|+++|++||.|.++|
T Consensus       187 t~~n~~~yv~~~~~~~--l~~~~~~---~~~afr~Gf~~vip~~~l~~lf~~~eL~~li~G~~~i~~~~L~~~~~y~~g~  261 (350)
T d1c4za_         187 TNENRKEFVNLYSDYI--LNKSVEK---QFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGY  261 (350)
T ss_dssp             CTTTHHHHHHHHHHHH--HTSTTHH---HHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSC
T ss_pred             cHHHHHHHHHHHHHHH--HhhhhHH---HHHHHHHhHHHhcCchhhhhcCCHHHHHHhhCCCCcccHHHHHhhCcccCCC
Confidence            4578888887664443  4433333   4788999999999999995 68999999999999999999999999999766


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140        145 GEPSERLIKFKRWLWSIVEKMTHLERMDL  173 (173)
Q Consensus       145 ~~~~~~~~~~i~wFW~vv~~~~~~~r~~l  173 (173)
                      ..+    +++|+|||+||++||+++|++|
T Consensus       262 ~~~----~~~i~~fw~vl~~~t~eer~~f  286 (350)
T d1c4za_         262 TRD----SVLIREFWEIVHSFTDEQKRLF  286 (350)
T ss_dssp             CSS----CHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCc----cHHHHHHHHHHHhCCHHHHHHh
Confidence            553    5789999999999999999875