Psyllid ID: psy12153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MTGDVCDEIDCVNGEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREASLNDYSQGSRPALNKGECFIAVFIS
Secondary Structure (PSIPRED)
ccccEEEcccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHEEEEEEEEEEcccHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccHcc
Coil and Loop (DISEMBL)
mtgdvcdeidcvngepvLLWHLYHHECKWNAAVVTLYFLGVILGsipaglladRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYwfpnwrdaelvtslpfvgfSLFYvwfipesplwkytknkiidfeylcddeshreaslndysqgsrpalnkgeCFIAVFIS
Flexible Loop (DISEMBL)
MTGDVCDEIDCVNGEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREASLndysqgsrpalnkgECFIAVFIS
Low Complexity Region (SEG)
MTGDVCDEIDCVNGEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREASLNDYSQGSRPALNKGECFIAVFIS
Disordered region (IsUnstruct)
****VCDEIDCVNGEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDD********************KGECFIAVFI*
Disordered Region (DISOPRED)
*TGDVCDEIDCVNGEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHR********************FIAVFIS
Disordered Region (DISEMBL)
MTGDVCDEIDCVNGEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREASLNDYSQGSRPALNKGECFIAVFIS
Disordered Region (DISPRO)
*TGDVCDEIDCVNGEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREA*******G*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGDVCDEIDCVNGEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREASLNDYSQGSRPALNKGECFIAVFIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
O77504	554	Solute carrier family 22	yes	N/A	0.661	0.281	0.314	1e-16
A7MBE0	563	Solute carrier family 22	yes	N/A	0.661	0.277	0.314	4e-16
O57379	562	Solute carrier family 22	N/A	N/A	0.665	0.279	0.312	9e-16
Q9WTW5	551	Solute carrier family 22	yes	N/A	0.584	0.250	0.312	1e-15
Q8MJI6	554	Solute carrier family 22	no	N/A	0.724	0.308	0.303	1e-15
O88446	551	Solute carrier family 22	yes	N/A	0.584	0.250	0.305	2e-15
A6QLW8	547	Solute carrier family 22	no	N/A	0.762	0.329	0.288	3e-15
O75751	556	Solute carrier family 22	yes	N/A	0.584	0.248	0.331	8e-15
O08966	556	Solute carrier family 22	no	N/A	0.584	0.248	0.324	9e-15
Q63089	556	Solute carrier family 22	no	N/A	0.716	0.303	0.288	9e-15

>sp|O77504|S22A1_RABIT Solute carrier family 22 member 1 OS=Oryctolagus cuniculus GN=SLC22A1 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 19/175 (10%)

Query: 39  LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL 98
           LG  LGS+  G +ADRFGR++ +L++        +       +   L+ R +QG   +G 
Sbjct: 157 LGFFLGSLGVGYIADRFGRKLCLLLTTLINAVSGVLTAVAPDYTSMLLFRLLQGLVSKG- 215

Query: 99  QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF 158
                          W  G   YTL+ E   + +R  VA + ++ ++VGLV LS V+Y  
Sbjct: 216 --------------SWMSG---YTLITEFVGSGYRRTVAILYQVAFSVGLVALSGVAYAI 258

Query: 159 PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREASL 213
           PNWR  +L  SLP     LFY W +PESP W  ++ +  D   + D+ + +   L
Sbjct: 259 PNWRWLQLTVSLPTF-LCLFYYWCVPESPRWLLSQKRNTDAVKIMDNIAQKNGKL 312

Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase.
Oryctolagus cuniculus (taxid: 9986)

>sp|A7MBE0|S22A1_BOVIN Solute carrier family 22 member 1 OS=Bos taurus GN=SLC22A1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 19/175 (10%)

Query: 39  LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL 98
           LG  LGS+  G +ADRFGR+V +L +     ++ +       +   LI R +QG   +G 
Sbjct: 152 LGFFLGSLGVGYIADRFGRKVCLLATTLTCASLGVLTAVAPDYTSLLIFRLLQGLVSKG- 210

Query: 99  QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF 158
                          W  G   YTL+ E     +R  VA + ++ +TVGLV+LS ++Y  
Sbjct: 211 --------------SWTAG---YTLITEFVGLGYRRTVAILYQMAFTVGLVLLSGLAYIL 253

Query: 159 PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREASL 213
           P+WR  +L  SLP +   LF  WF+PESP W  ++ +  +   + D  + +   L
Sbjct: 254 PHWRWLQLAVSLP-IFLLLFRFWFVPESPRWLLSQKRNTEAIKIMDHIAQKNGKL 307

Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase.

Bos taurus (taxid: 9913)

>sp|O57379|S22A6_PSEAM Solute carrier family 22 member 6 OS=Pseudopleuronectes americanus GN=SLC22A6 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 19/176 (10%)

Query: 20  WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR 79
           WHL      +     T+Y  GV++G++  G L+DR+GRR+++LIS            ++ 
Sbjct: 136 WHLVCDMHSFKQMGQTIYMGGVLVGALLFGGLSDRYGRRILLLISNLLMAVSGTCAAFSS 195

Query: 80  SFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV 139
           SF ++ + R   G  + GL                  G+ T++L++E  PTR R  V   
Sbjct: 196 SFSLFCVFRFGCGLALSGL------------------GLNTFSLIVEWIPTRIRTAVGTT 237

Query: 140 TEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
           T  C+T+G ++L L++Y+  +WR   L  SLPF  F L   WF  ES  W    N+
Sbjct: 238 TGYCYTLGQLILVLLAYFIRDWRWLTLAVSLPFYVFFLIAWWF-HESSRWLALSNR 292

Involved in the renal elimination of endogenous and exogenous organic anions. Functions as organic anion exchanger when the uptake of one molecule of organic anion is coupled with an efflux of one molecule of endogenous dicarboxylic acid (glutarate, ketoglutarate, etc). Mediates the sodium-independent uptake of p-aminohippurate (PAH), 2,3-dimercapto-1-propanesulfonic acid (DMPS), cidofovir, adefovir, 9-(2-phosphonylmethoxyethyl) guanine (PMEG), 9-(2-phosphonylmethoxyethyl) diaminopurine (PMEDAP), ochratoxin (OTA), acyclovir (ACV), 3'-azido-3-'deoxythymidine (AZT), cimetidine (CMD), 2,4-dichloro-phenoxyacetate (2,4-D), hippurate (HA), indoleacetate (IA), indoxyl sulfate (IS), 3-carboxy-4-methyl-5-propyl-2-furanpropionate (CMPF) and edaravone sulfate (By similarity). Mediates the sodium-independent uptake of p-aminohippurate (PAH). PAH uptake is inhibited by p-chloromercuribenzenesulphonate (PCMBS), diethyl pyrocarbonate (DEPC), indomethacin, sulindac, diclofenac, carprofen, okadaic acid, benzothiazolylcysteine (BTC), S-chlorotrifluoroethylcysteine (CTFC), cysteine S-conjugates S-dichlorovinylcysteine (DCVC), furosemide, steviol, phorbol 12-myristate 13-acetate (PMA), calcium ionophore A23187, benzylpenicillin, bumetamide, losartan, probenecid, phenol red, urate, glutarate and alpha-ketoglutarate (By similarity). PAH uptake is inhibited by glutarate.

Pseudopleuronectes americanus (taxid: 8265)

>sp|Q9WTW5|S22A3_MOUSE Solute carrier family 22 member 3 OS=Mus musculus GN=Slc22a3 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 19/157 (12%)

Query: 39  LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL 98
           LG + G+   G  ADR+GR +I LIS +G G   + + +  +F V++I R +QG F +G 
Sbjct: 158 LGFLAGAFTLGYAADRYGRLIIYLISCFGVGITGVVVAFAPNFSVFVIFRFLQGVFGKGA 217

Query: 99  QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF 158
             + + ++ E+  ++ R                 RI V  V ++ +T+G+++L  ++Y+ 
Sbjct: 218 WMTCFVIVTEIVGSKQR-----------------RI-VGIVIQMFFTLGIIILPGIAYFT 259

Query: 159 PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
           P+W+  +L  SLP   F L+Y W +PESP W  T+ +
Sbjct: 260 PSWQGIQLAISLPSFLFLLYY-WVVPESPRWLITRKQ 295

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Mus musculus (taxid: 10090)

>sp|Q8MJI6|S22A2_RABIT Solute carrier family 22 member 2 OS=Oryctolagus cuniculus GN=SLC22A2 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 20/191 (10%)

Query: 39  LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL 98
           +G  +GS+  G LADRFGR++ +L++     A  + +  + ++   LI R +QG   +  
Sbjct: 157 IGFFIGSVGIGYLADRFGRKLCLLVTILINAAAGVLMAVSPNYTWMLIFRLIQGLVSKA- 215

Query: 99  QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF 158
                          W IG   Y L+ E     +R  V  + ++ +TVGL++L+ V+Y  
Sbjct: 216 --------------GWLIG---YILITEFVGLNYRRTVGILYQVAFTVGLLVLAGVAYAL 258

Query: 159 PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREA-SLNDYS 217
           P WR  +L  +LP+  F L+Y W IPESP W  ++NK      + +  + +   SL    
Sbjct: 259 PRWRWLQLTVTLPYFCFLLYY-WCIPESPRWLISQNKNAKAMRIMEHIAKKNGKSLPVSL 317

Query: 218 QGSRPALNKGE 228
           Q  R A + GE
Sbjct: 318 QSLRAAEDVGE 328

Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), 1-methyl-4-phenylpyridinium (MPP), cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity (By similarity). Mediates tubular uptake of tetraethylammonium (TEA) and cimetidine.

Oryctolagus cuniculus (taxid: 9986)

>sp|O88446|S22A3_RAT Solute carrier family 22 member 3 OS=Rattus norvegicus GN=Slc22a3 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 19/157 (12%)

Query: 39  LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL 98
           LG + G+   G  ADR+GR ++ LIS +G G   + + +  +F V++I R +QG F +G 
Sbjct: 158 LGFLAGAFTLGYAADRYGRLIVYLISCFGVGITGVVVAFAPNFSVFVIFRFLQGVFGKGA 217

Query: 99  QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF 158
             + + ++ E+  ++ R                 RI V  V ++ +T+G+++L  ++Y+ 
Sbjct: 218 WMTCFVIVTEIVGSKQR-----------------RI-VGIVIQMFFTLGIIILPGIAYFT 259

Query: 159 PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
           P+W+  +L  SLP   F L+Y W +PESP W  T+ +
Sbjct: 260 PSWQGIQLAISLPSFLFLLYY-WVVPESPRWLITRKQ 295

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Rattus norvegicus (taxid: 10116)

>sp|A6QLW8|S22A7_BOVIN Solute carrier family 22 member 7 OS=Bos taurus GN=SLC22A7 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 35/215 (16%)

Query: 20  WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR 79
           W L   +   N A+ T +F GV++G+   G L+DRFGRR ++L+++    A+ +A   + 
Sbjct: 133 WDLVCEQKGLNKAISTFFFAGVLVGAEVYGYLSDRFGRRRLLLVAYVSSLALGLASAASV 192

Query: 80  SFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV 139
           S+ ++ I RT+ G  + G     +T+++               L +E    R R     +
Sbjct: 193 SYIMFAITRTLTGMALAG-----FTIIV-------------MPLELEWLDVRHRTVAGVL 234

Query: 140 TEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDF 199
           +   WT G+++L+L+ Y   +WR   L  +LP V   +  +W++PES  W  T+ ++   
Sbjct: 235 SSTFWTGGVMLLALIGYLIRDWRWLLLTVTLPCVP-GILTLWWVPESARWLLTQGRV--- 290

Query: 200 EYLCDDESHRE----ASLNDYSQG----SRPALNK 226
                +E+HR     A LN    G    SR ALNK
Sbjct: 291 -----EEAHRYLLRCARLNGPPVGEDSLSREALNK 320

Mediates sodium-independent multispecific organic anion transport.

Bos taurus (taxid: 9913)

>sp|O75751|S22A3_HUMAN Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 19/157 (12%)

Query: 39  LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL 98
           LG + G+   G  ADR+GR VI L+S  G G   + + +  +FPV++I R +QG F +G 
Sbjct: 163 LGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGT 222

Query: 99  QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF 158
             + Y ++ E+  ++ R                 RI V  V ++ +T+G+++L  ++Y+ 
Sbjct: 223 WMTCYVIVTEIVGSKQR-----------------RI-VGIVIQMFFTLGIIILPGIAYFI 264

Query: 159 PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
           PNW+  +L  +LP   F L+Y W +PESP W  T+ K
Sbjct: 265 PNWQGIQLAITLPSFLFLLYY-WVVPESPRWLITRKK 300

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Homo sapiens (taxid: 9606)

>sp|O08966|S22A1_MOUSE Solute carrier family 22 member 1 OS=Mus musculus GN=Slc22a1 PE=2 SV=2

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 19/157 (12%)

Query: 39  LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL 98
           LG  LGS+  G +ADRFGR++ +L++        +       +   L+ R +QG   +G 
Sbjct: 158 LGFFLGSLVVGYIADRFGRKLCLLVTTLVTSLSGVLTAVAPDYTSMLLFRLLQGMVSKG- 216

Query: 99  QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF 158
                          W   V+ YTL+ E   + +R   A + ++ +TVGLV L+ V+Y  
Sbjct: 217 --------------SW---VSGYTLITEFVGSGYRRTTAILYQVAFTVGLVGLAGVAYAI 259

Query: 159 PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
           P+WR  +L  SLP   F L+Y WF+PESP W  ++ +
Sbjct: 260 PDWRWLQLAVSLPTFLFLLYY-WFVPESPRWLLSQKR 295

Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase.

Mus musculus (taxid: 10090)

>sp|Q63089|S22A1_RAT Solute carrier family 22 member 1 OS=Rattus norvegicus GN=Slc22a1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 39/208 (18%)

Query: 39  LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL 98
           LG  LGS+  G +ADRFGR++ +L++        +       +   L+ R +QG   +G 
Sbjct: 158 LGFFLGSLVVGYIADRFGRKLCLLVTTLVTSVSGVLTAVAPDYTSMLLFRLLQGMVSKG- 216

Query: 99  QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF 158
                          W   V+ YTL+ E   + +R   A + ++ +TVGLV L+ V+Y  
Sbjct: 217 --------------SW---VSGYTLITEFVGSGYRRTTAILYQMAFTVGLVGLAGVAYAI 259

Query: 159 PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKII-------------------DF 199
           P+WR  +L  SLP   F L+Y WF+PESP W  ++ +                     D 
Sbjct: 260 PDWRWLQLAVSLPTFLFLLYY-WFVPESPRWLLSQKRTTRAVRIMEQIAQKNGKVPPADL 318

Query: 200 EYLCDDESHREASLNDYSQGSR-PALNK 226
           + LC +E   E     ++   R P L K
Sbjct: 319 KMLCLEEDASEKRSPSFADLFRTPNLRK 346

Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
350401192	700	PREDICTED: solute carrier family 22 memb	0.716	0.241	0.376	7e-30
340720594	700	PREDICTED: solute carrier family 22 memb	0.622	0.21	0.415	9e-30
380012901	655	PREDICTED: solute carrier family 22 memb	0.720	0.259	0.365	8e-29
328785596	708	PREDICTED: solute carrier family 22 memb	0.665	0.221	0.387	9e-29
307183275	691	Solute carrier family 22 member 8 [Campo	0.601	0.205	0.416	5e-28
322802004	696	hypothetical protein SINV_06783 [Solenop	0.622	0.211	0.385	1e-27
332027943	641	Solute carrier family 22 member 3 [Acrom	0.601	0.221	0.428	1e-27
328785594	731	PREDICTED: solute carrier family 22 memb	0.665	0.214	0.354	4e-25
307205093	744	Solute carrier family 22 member 3 [Harpe	0.622	0.197	0.343	8e-25
383849284	695	PREDICTED: solute carrier family 22 memb	0.694	0.235	0.385	8e-24

>gi|350401192|ref|XP_003486079.1| PREDICTED: solute carrier family 22 member 8-like [Bombus impatiens]

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 113/199 (56%), Gaps = 30/199 (15%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           T+Y++GV++G+  AGLLADR GR  +  I  Y QG +++A+   +++P +L LR +QG F
Sbjct: 115 TVYYIGVLMGACIAGLLADRIGRLPVQAICLYTQGTMAVALYVVQNYPTFLALRGLQGVF 174

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
           VQGLQNSTY L +ELFP + R    T+              VA V +I W +GL++L+ +
Sbjct: 175 VQGLQNSTYILSLELFPVKAR----TF--------------VALVMQIAWAIGLMLLAAL 216

Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEY---------LCDD 205
           SY  P+WR  +L  S+P    ++ Y+W IPESP W   K KI + +          +C  
Sbjct: 217 SYVIPDWRILQLAVSVP-TAITVLYIWIIPESPRWLLAKGKITEADMAVERITKYNVCCT 275

Query: 206 ESHRE--ASLNDYSQGSRP 222
            S RE   +  + S+ + P
Sbjct: 276 RSRRENVKTETNISENATP 294

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720594|ref|XP_003398719.1| PREDICTED: solute carrier family 22 member 8-like [Bombus terrestris]

 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 19/166 (11%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           T+Y++GV++G+  AGLLADR GR  +  I  Y QG +++A+   +++P +L LR +QG F
Sbjct: 115 TVYYIGVLMGACIAGLLADRIGRLPVQAICLYTQGTMAVALYVVQNYPTFLALRGLQGVF 174

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
           VQGLQNSTY L +ELFP + R    T+              VA V +I W +GL++L+ +
Sbjct: 175 VQGLQNSTYILSLELFPVKAR----TF--------------VALVMQIAWAIGLMLLAAL 216

Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFE 200
           SY  P+WR  +L  S+P    ++ Y+W IPESP W   K KI + +
Sbjct: 217 SYVIPDWRILQLAVSVP-TAITVLYIWIIPESPRWLLAKGKITEAD 261

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012901|ref|XP_003690511.1| PREDICTED: solute carrier family 22 member 8-like [Apis florea]

 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 19/189 (10%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           T+Y++GV++G+  AGLLADR GR  +  +  Y QG +++A+   +++P +L LR +QG F
Sbjct: 115 TVYYIGVLMGAWIAGLLADRIGRLPVQALCLYTQGTMAVALYVVQNYPTFLALRGLQGVF 174

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
           VQGLQNSTY L +ELFP + R    T+              VA V +I W +GL++L+ +
Sbjct: 175 VQGLQNSTYILSLELFPAKAR----TF--------------VALVMQIAWAIGLILLAAL 216

Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHREASLN 214
           SY  P+WR  +L  S+P    ++ Y+W IPESP W   K K  + +   +  +       
Sbjct: 217 SYIIPDWRILQLAVSVP-TAITVLYIWMIPESPRWLLAKGKTTEADMALERIAKYNVCCR 275

Query: 215 DYSQGSRPA 223
           D  +  R +
Sbjct: 276 DADETGRKS 284

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785596|ref|XP_003250621.1| PREDICTED: solute carrier family 22 member 8-like isoform 2 [Apis mellifera]

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 29/186 (15%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           T+Y++GV++G+  AGLLADR GR  +  +  Y QG +++A+   +++P +L LR +QG F
Sbjct: 115 TVYYIGVLMGAWIAGLLADRIGRLPVQALCLYTQGTMAVALYVVQNYPTFLALRGLQGVF 174

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
           VQGLQNSTY L +ELFP + R    T+              VA V +I W +GL++L+ +
Sbjct: 175 VQGLQNSTYILSLELFPAKAR----TF--------------VALVMQIAWAIGLILLAAL 216

Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK----------IIDFEYLCD 204
           SY  P+WR  +L  S+P    ++ Y+W IPESP W   K K          I  +   C 
Sbjct: 217 SYVIPDWRILQLAVSVP-TAITVLYIWMIPESPRWLLAKGKTTEADMALERIAKYNVCCT 275

Query: 205 DESHRE 210
             S RE
Sbjct: 276 RLSRRE 281

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183275|gb|EFN70144.1| Solute carrier family 22 member 8 [Camponotus floridanus]

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 99/161 (61%), Gaps = 19/161 (11%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           T+Y++GV+LG+   G LAD  GR  +  I  Y QG +++A+   +S+P +L+LR +QG F
Sbjct: 115 TVYYVGVLLGAWITGFLADCIGRLPVQAICLYAQGTMAVALYMVQSYPAFLVLRGLQGVF 174

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
           VQGLQNSTY L +ELFP + R      TL            VA + +I W++GL++L+++
Sbjct: 175 VQGLQNSTYILSLELFPAQLR------TL------------VALIMQISWSIGLILLAML 216

Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
           SY  P+WR  +L  S+P    ++ Y+W IPESP W   K K
Sbjct: 217 SYVIPDWRILQLAVSVP-TAVTVLYIWIIPESPRWLLAKGK 256

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802004|gb|EFZ22541.1| hypothetical protein SINV_06783 [Solenopsis invicta]

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 98/166 (59%), Gaps = 19/166 (11%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           T+Y+ G++LG+   G+L DR GR  +  I  Y QG +++A+   +S+P +L LR +QG F
Sbjct: 115 TVYYTGILLGAWITGILIDRIGRLPVQAICLYAQGTMAVALYIVQSYPAFLALRGLQGVF 174

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
           VQGLQNSTY L +E                  LFP R R  VA + +I W++GL++L+++
Sbjct: 175 VQGLQNSTYILSLE------------------LFPARSRTVVALIMQISWSIGLILLAVL 216

Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFE 200
           SY  P+WR  +L  S+P    ++ Y+W I ESP W   K K+ + +
Sbjct: 217 SYMIPDWRILQLAVSVP-TAITVLYIWIISESPRWLLAKGKLTEAD 261

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027943|gb|EGI67995.1| Solute carrier family 22 member 3 [Acromyrmex echinatior]

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 98/161 (60%), Gaps = 19/161 (11%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           T+Y++GV+LG+   G L D  GR  +  I  Y QG I++A+   +S+  +L+LR++QG F
Sbjct: 65  TVYYIGVLLGAWITGFLIDLIGRLPVQAICLYVQGTIAVALYIVQSYSAFLVLRSLQGVF 124

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
           VQGLQNSTY L +ELFP R R      TL            VA + +I W++GLV+L+L+
Sbjct: 125 VQGLQNSTYILSLELFPARSR------TL------------VALIMQISWSMGLVLLALL 166

Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
           SY  P+WR  +L  S+P    ++ Y+W IPESP W   K K
Sbjct: 167 SYVIPDWRILQLAVSVP-TAITVLYIWIIPESPRWLLAKEK 206

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785594|ref|XP_001122149.2| PREDICTED: solute carrier family 22 member 8-like isoform 1 [Apis mellifera]

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 104/209 (49%), Gaps = 52/209 (24%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIA-----------------IVY 77
           T+Y++GV++G+  AGLLADR GR  +  +  Y QG +++A                 I  
Sbjct: 115 TVYYIGVLMGAWIAGLLADRIGRLPVQALCLYTQGTMAVALYVVQVHKFLEKKNDKIIKI 174

Query: 78  NRSF------PVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTR 131
           ++SF      P +L LR +QG FVQGLQNSTY L +ELF                  P +
Sbjct: 175 SKSFFSFQNYPTFLALRGLQGVFVQGLQNSTYILSLELF------------------PAK 216

Query: 132 WRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKY 191
            R  VA V +I W +GL++L+ +SY  P+WR  +L  S+P    ++ Y+W IPESP W  
Sbjct: 217 ARTFVALVMQIAWAIGLILLAALSYVIPDWRILQLAVSVP-TAITVLYIWMIPESPRWLL 275

Query: 192 TKNK----------IIDFEYLCDDESHRE 210
            K K          I  +   C   S RE
Sbjct: 276 AKGKTTEADMALERIAKYNVCCTRLSRRE 304

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205093|gb|EFN83564.1| Solute carrier family 22 member 3 [Harpegnathos saltator]

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 45/192 (23%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI------------------- 75
           T Y+ GV+LG+  AGLLADR GR  +  I  Y QG +++A+                   
Sbjct: 116 TAYYTGVLLGAWIAGLLADRIGRLPVQAICLYAQGTMAVALYVVQGGLTARMQEFKLENI 175

Query: 76  -------VYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELF 128
                    ++++P +L LR +QG F QGLQNSTY L                   +ELF
Sbjct: 176 RETRVTFFTSQNYPAFLALRALQGVFAQGLQNSTYILC------------------LELF 217

Query: 129 PTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPL 188
           P R R  VA + +I W++GL++L+++SY  P+WR  +L  S+P    ++ Y+W IPESP 
Sbjct: 218 PARSRTLVALIMQISWSIGLMLLAVLSYVIPDWRILQLAVSVP-TAITVLYIWIIPESPR 276

Query: 189 WKYTKNKIIDFE 200
           W   + K  + +
Sbjct: 277 WLLARGKSTEAD 288

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849284|ref|XP_003700275.1| PREDICTED: solute carrier family 22 member 8-like [Megachile rotundata]

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 110/192 (57%), Gaps = 28/192 (14%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           T+Y++GV++G+  AGLLADR GR  +  I  Y QG +++A+   +++P +L LR +QG F
Sbjct: 114 TVYYIGVLMGAWIAGLLADRIGRLPVQAICLYTQGTMAVALYVVQNYPTFLALRGLQGVF 173

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
           VQGLQNSTY L +ELFP + R    T+              VA V +I W +GL++L+ +
Sbjct: 174 VQGLQNSTYILSLELFPAKAR----TF--------------VALVMQIAWAIGLLLLAAL 215

Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEY---------LCDD 205
           SY  P+WR  +L  S+P    ++ Y+W IPESP W   K K  + +          +C  
Sbjct: 216 SYAIPDWRILQLAVSVP-TAITVLYIWMIPESPRWLLAKGKTTEADMAVERIGKYNVCCT 274

Query: 206 ESHREASLNDYS 217
           +S RE S  + S
Sbjct: 275 KSRRENSKTEMS 286

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
UNIPROTKB|Q5T047	147	SLC22A7 "Solute carrier family	0.580	0.931	0.282	5e-12
UNIPROTKB|A6NK97	555	SLC22A20 "Solute carrier famil	0.419	0.178	0.292	1.9e-11
ZFIN|ZDB-GENE-091118-62	319	slc22a21 "solute carrier famil	0.330	0.244	0.279	2.3e-11
UNIPROTKB|Q2KJE9	557	SLC22A5 "Solute carrier family	0.330	0.140	0.313	7.7e-11
UNIPROTKB|I3L8Z2	484	LOC100627825 "Uncharacterized	0.338	0.165	0.308	9.9e-11
UNIPROTKB|F1SJT6	549	SLC22A13 "Uncharacterized prot	0.338	0.145	0.308	1.4e-10
UNIPROTKB|I3LP03	152	I3LP03 "Uncharacterized protei	0.326	0.506	0.397	2.1e-10
UNIPROTKB|E2RPT2	551	SLC22A13 "Uncharacterized prot	0.313	0.134	0.293	4.5e-10
ZFIN|ZDB-GENE-080204-92	554	zgc:175176 "zgc:175176" [Danio	0.512	0.218	0.303	5.9e-10
MGI|MGI:2444335	494	Svopl "SV2 related protein hom	0.364	0.174	0.375	7.7e-10

UNIPROTKB|Q5T047 SLC22A7 "Solute carrier family 22 member 7" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 43/152 (28%), Positives = 77/152 (50%)

Query:    20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR 79
             W L   +   N A  T +F GV++G++  G L+DRFGRR ++L+++     + +A   + 
Sbjct:     3 WDLVCEQKGLNRAASTFFFAGVLVGAVAFGYLSDRFGRRRLLLVAYVSTLVLGLASAASV 62

Query:    80 SFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV 139
             S+ ++ I RT+ G  + G     +T+++   P    +G A     +E      R     +
Sbjct:    63 SYVMFAITRTLTGSALAG-----FTIIV--MP----LGEAE----LEWLDVEHRTVAGVL 107

Query:   140 TEICWTVGLVMLSLVSYWFPNWRDAELVTSLP 171
             +   WT G+++L+LV Y   +WR   L  +LP
Sbjct:   108 SSTFWTGGVMLLALVGYLIRDWRWLLLAVTLP 139

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|A6NK97 SLC22A20 "Solute carrier family 22 member 20" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 29/99 (29%), Positives = 47/99 (47%)

Query:    17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV 76
             V+ W L            ++Y  GV++G+   G LADR G +  ++ S+    A   A  
Sbjct:   123 VMEWDLVCEARTLRDLAQSVYMAGVLVGAAVFGSLADRLGCKGPLVWSYLQLAASGAATA 182

Query:    77 YNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWR 115
             Y  SF  Y + R + G    G+  ++ +L++E  PTR R
Sbjct:   183 YFSSFSAYCVFRFLMGMTFSGIILNSVSLVVEWMPTRGR 221

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-091118-62 slc22a21 "solute carrier family 22 (organic cation transporter), member 21" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
 Identities = 24/86 (27%), Positives = 51/86 (59%)

Query:    20 WHLYHHECKWNAAVVT-LYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN 78
             W L   +  W + + + ++F GV+ GS+ +G ++DRFGR++++ ++   Q   ++  V++
Sbjct:   134 WDLVCSD-DWKSPLTSSIFFCGVLTGSVISGPVSDRFGRKIVLFVTMAIQTLFTVVQVFS 192

Query:    79 RSFPVYLILRTMQGFFVQGL-QNSTY 103
              S+ ++ +L     FF+ G+ Q S Y
Sbjct:   193 PSWQIFCLL-----FFIVGMGQISNY 213

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q2KJE9 SLC22A5 "Solute carrier family 22 (Organic cation/carnitine transporter), member 5" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
 Identities = 27/86 (31%), Positives = 53/86 (61%)

Query:    20 WHLYHHECKWNAAV-VTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN 78
             W+L   +  W A + ++L+F+GV++GS  +G L+DRFGR+ ++ ++   Q   S   +++
Sbjct:   132 WNLVCED-DWKAPLTISLFFVGVLMGSFISGQLSDRFGRKNVLFVTMGMQTGFSFLQIFS 190

Query:    79 RSFPVYLILRTMQGFFVQGL-QNSTY 103
             ++F ++ +L     FF+ G+ Q S Y
Sbjct:   191 KNFEMFTVL-----FFLVGMGQISNY 211

GO:0070715 "sodium-dependent organic cation transport" evidence=IEA

GO:0060731 "positive regulation of intestinal epithelial structure maintenance" evidence=IEA

GO:0052106 "quorum sensing involved in interaction with host" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3L8Z2 LOC100627825 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
 Identities = 25/81 (30%), Positives = 41/81 (50%)

Query:   122 TLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVW 181
             TLL E     WR     V +  ++VG + L+ ++Y   NWR  ++  + P V    FY+W
Sbjct:   211 TLLTEWVGPSWRTRTVVVAQCSFSVGQMALAGLAYGIRNWRLLQIAGASP-VFLLFFYIW 269

Query:   182 FIPESPLWKYTKNKIIDFEYL 202
              +PES  W  T  ++ + + L
Sbjct:   270 ALPESARWLLTHGRVEEAKQL 290

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1SJT6 SLC22A13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 25/81 (30%), Positives = 41/81 (50%)

Query:   122 TLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVW 181
             TLL E     WR     V +  ++VG + L+ ++Y   NWR  ++  + P V    FY+W
Sbjct:   211 TLLTEWVGPSWRTRTVVVAQCSFSVGQMALAGLAYGIRNWRLLQIAGASP-VFLLFFYIW 269

Query:   182 FIPESPLWKYTKNKIIDFEYL 202
              +PES  W  T  ++ + + L
Sbjct:   270 ALPESARWLLTHGRVEEAKQL 290

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|I3LP03 I3LP03 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query:   118 VATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSL 177
             +A YTL+ E     +R  VA + +  ++VGLV+LS ++Y  P+WR  +L  SLP     L
Sbjct:    55 MAGYTLITEFVGLGYRKTVAILYQTAFSVGLVLLSGLAYAVPHWRSLQLAVSLPIFLLLL 114

Query:   178 FYVWFIPESPLWKYTKNK 195
              Y WF+PESP W  ++ +
Sbjct:   115 CY-WFVPESPRWLLSQKR 131

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|E2RPT2 SLC22A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 108 (43.1 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 22/75 (29%), Positives = 38/75 (50%)

Query:   122 TLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVW 181
             TLL E     WR     + +  ++VG + L+ ++Y   NWR  ++  + P +    FY W
Sbjct:   211 TLLTEWVGPLWRTRAVVLAQCAFSVGEMALAGLAYGIRNWRHFQMAGTAPVL-LLFFYFW 269

Query:   182 FIPESPLWKYTKNKI 196
              +PES  W  T+ ++
Sbjct:   270 ALPESARWLLTQGRV 284

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-080204-92 zgc:175176 "zgc:175176" [Danio rerio (taxid:7955)]

 Score = 163 (62.4 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 40/132 (30%), Positives = 67/132 (50%)

Query:    40 GVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQ 99
             G  +G++  G LADRFGR+   + S +G G     I+++  +P+ L  R +QGFF +G  
Sbjct:   149 GFFIGALVTGYLADRFGRKSCFIASIFGLGVSGTCIIFSPYYPLLLFFRCLQGFFAKGAW 208

Query:   100 NSTYTLLIELFPTRWR--IGVAT---YTLLIELFPTRWRIGVAWVT-EICWTVGLVMLSL 153
              +TY L+IE F +  R  + V +   Y+L + L P       +W   ++  T+    + L
Sbjct:   209 TATYVLIIEFFGSNNRKFVSVMSRTFYSLGLVLLPALAYYIPSWRNLQLAMTLP-TFIFL 267

Query:   154 VSYWF----PNW 161
             + +W     P W
Sbjct:   268 IYHWVIPESPRW 279

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2444335 Svopl "SV2 related protein homolog (rat)-like" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
 Identities = 33/88 (37%), Positives = 48/88 (54%)

Query:    29 WNAA-VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLIL 87
             W  A V T+ F G ++ SI  GLLADR+GR  I+L+SF      S+   ++ S+  ++ L
Sbjct:    84 WQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFL 143

Query:    88 RTMQGFFVQGLQNSTYTLLIELFPTRWR 115
             RTM G  V G       +  E  PT++R
Sbjct:   144 RTMVGCGVSGHAQGLI-IKTEFLPTKYR 170

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	236
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-30
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-10
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-10
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-09
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-07
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-07
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	6e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-06
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	3e-05
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-05
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	1e-04
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	1e-04
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	3e-04
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	4e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	4e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	5e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	9e-04
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.001
COG2270	438	COG2270, COG2270, Permeases of the major facilitat	0.003

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  117 bits (296), Expect = 1e-30
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 19/162 (11%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           + +F+GV+LGS   G L+DRFGR+ ++L+S        +   ++ ++ V+L+ R + G  
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMG 193

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
           + G                  I V    L  E  P + R  V  + ++ +++GLV+L LV
Sbjct: 194 IGG------------------IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLV 235

Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKI 196
           +Y+ P+WR  +L  SLP   F     WF+PESP W  ++ +I
Sbjct: 236 AYFIPDWRWLQLAVSLPTFLF-FLLSWFVPESPRWLISQGRI 276

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 21/157 (13%)

Query: 31  AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTM 90
             +V+ + LG  LGS+ AG L+DRFGRR ++L+        S+ + +  S  + L+ R +
Sbjct: 37  GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFL 96

Query: 91  QGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVM 150
            G     L  +   L+ E FP + R                       +    + +G ++
Sbjct: 97  LGLGGGALYPAAAALIAEWFPPKERGRALG------------------LFSAGFGLGALL 138

Query: 151 LSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWFIP 184
             L+         WR   L+ ++  +  +L  ++ + 
Sbjct: 139 GPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR 175

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 35/181 (19%)

Query: 28  KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLIS--FYGQGAISIAIVYNRSFPVYL 85
             +  +V+++ +G ++GS+ AG L DRFGR+  +LI    +  GA+       +SF + +
Sbjct: 46  VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLI 105

Query: 86  ILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWT 145
           + R + G  V G+       + E+ P + R        L +L                 T
Sbjct: 106 VGRVIVGLGVGGISVLVPMYISEIAPKKLR---GALGSLYQLG---------------IT 147

Query: 146 VGLVMLSLVSYWF----------PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
            G+    LV+               WR   L          L  + F+PESP W   K K
Sbjct: 148 FGI----LVAAIIGLGLNKYSNSDGWR-IPLGLQFVPAILLLIGLLFLPESPRWLVLKGK 202

Query: 196 I 196
           +
Sbjct: 203 L 203

Length = 449

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 33  VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
           ++T + LG  L    AG L+DRFGRR ++LI         + +++  S  + L+LR +QG
Sbjct: 37  LLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG 96

Query: 93  FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLS 152
                L  +   L+ + FP                 P      +  ++   + +G  +  
Sbjct: 97  LGGGALFPAAAALIADWFP-----------------PEERGRALGLLS-AGFGLGAALGP 138

Query: 153 LVSYWF---PNWRDAELVTSLPFVGFSLFYVWFIPESP 187
           L+         WR A L+ ++  +  ++     +P  P
Sbjct: 139 LLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPP 176

Length = 346

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 29  WNAAVVTLYFL------GVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFP 82
           W    V L FL      G+  G++  G LADR GRR ++L S       ++      +  
Sbjct: 47  WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVT 106

Query: 83  VYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATY 121
             LILR + G  + GL  +   L+ E  P R+R      
Sbjct: 107 QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGL 145

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 11/157 (7%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
            + +LG+++G+   G LAD+ GR+  +LI     G  +    + + +  +L  R + GF 
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268

Query: 95  VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTV----GLVM 150
           + G     ++   E      R    ++  +       W IG  +   + W +    G   
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF------WMIGGIYAAAMAWAIIPHYGWSF 322

Query: 151 LSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESP 187
               +Y F +WR   +V + P V F++  + F+PESP
Sbjct: 323 QMGSAYQFHSWRVFVIVCAFPCV-FAIGALTFMPESP 358

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 31  AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR--SFPVYLILR 88
           A    L+  G ++GSI  G LADR G RV  L+     GA+   +V +   S  + L+L 
Sbjct: 288 ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLL--GAVFAVLVGSTLFSPTLLLLLG 345

Query: 89  TMQGFFVQGLQNSTYTLLIELFPTRWR 115
            + GFFV G Q+  Y L+   +PT  R
Sbjct: 346 AIAGFFVNGGQSGLYALMALFYPTAIR 372

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 34 VTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGF 93
          +  Y LG ++ S  +GLL DRFGR+ ++L+  +     +     + +  V +I R +QGF
Sbjct: 4  LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGF 63

Query: 94 F 94
           
Sbjct: 64 G 64

Length = 141

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 16/170 (9%)

Query: 22  LYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSF 81
            +       A++++   +    G++  GL  DR+GRR+ M+ S     A ++A  +   +
Sbjct: 41  EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGY 100

Query: 82  PVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTE 141
               I R + G  + G   S+   +IE +P   R   A+  LLI  +             
Sbjct: 101 ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLR-NKAS-GLLISGY------------A 146

Query: 142 ICWTVGLVMLSLVSYWF-PNWRDAELVTSLPFVGFSLFYVWFIPESPLWK 190
           +   V   + SLV   +   WR    ++ LP + F+L+    IPE+  WK
Sbjct: 147 VGAVVAAQVYSLVVPVWGDGWRALFFISILPII-FALWLRKNIPEAEDWK 195

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 27/181 (14%)

Query: 33  VVTLYFLGVILGSIPAGLLADRFGRRVIMLIS---FYGQGAISIAIVYNRSFPVYLILRT 89
           VV+++ +G  +G++ AG L+DRFGR+  +LI    F     +     +  S  + ++ R 
Sbjct: 76  VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRV 135

Query: 90  MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLV 149
           + G  V          L E+ P   R      T L +L                 T G++
Sbjct: 136 LLGIGVGIASALVPMYLSEIAPKALR---GALTSLYQL---------------AITFGIL 177

Query: 150 MLSLVSYW--FPNWR---DAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDF-EYLC 203
           +           N        L   L   G     ++F+PESP W   K ++ +  + L 
Sbjct: 178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLA 237

Query: 204 D 204
            
Sbjct: 238 R 238

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 11/155 (7%)

Query: 33  VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
           V+T Y L   +     G LA RFG R + LIS +     S+      +  + +I R +QG
Sbjct: 42  VITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQG 101

Query: 93  FFVQGLQNSTYTLLIELFPTRWR-IGVATYTLLIELFPTRWRIGVAWVTE-ICW------ 144
           F    L   +++ L+ ++P   R   +A + L + + P        W+ E   W      
Sbjct: 102 FGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161

Query: 145 --TVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSL 177
              +G++++ +  +  P  + A    +  F+G  L
Sbjct: 162 NVPIGIIVVVVAFFILPRDKPAASE-NFDFLGLLL 195

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 22/79 (27%), Positives = 40/79 (50%)

Query: 35  TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
           TLY LG   G +  G L+DR+GRR ++L+  +     S+ +  + +    L+LR +Q F 
Sbjct: 47  TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106

Query: 95  VQGLQNSTYTLLIELFPTR 113
                  +  L+ +++P  
Sbjct: 107 ASAGSVISQALVRDIYPGE 125

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 33 VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
          V + +  G ++G  P G L DRFG R  + +     G  +    +  ++    ILR + G
Sbjct: 34 VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG 93

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 26/152 (17%)

Query: 43  LGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNST 102
           +     G ++DR   RV + I       +++   ++ S  V   L  + G F QG+    
Sbjct: 45  ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIF-QGMGWPP 103

Query: 103 YTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVG------LVMLSLVSY 156
               +    T+W             F    R            VG      LV+  +   
Sbjct: 104 CGRTV----TKW-------------FSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL 146

Query: 157 WFPNWRDAELVTSLPFVGFSLFYVWFIPESPL 188
           +  +W    +V  +  +  SL     + +SP 
Sbjct: 147 Y--SWHWVFIVPGIIAIIVSLICFLLLRDSPQ 176

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 31  AAVVTLYF-LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRT 89
           A +V + F +G  LGS+  G L DR   R ++L+ + G  A   A+    SF   L+   
Sbjct: 257 AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF 316

Query: 90  MQGFFVQGLQNSTYTLLIELFPTRWR 115
             G FV G Q+  Y L    +PT+ R
Sbjct: 317 AAGLFVVGGQSVLYALAPLFYPTQVR 342

Length = 406

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 39  LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
           LG++ G++  G LADR GR+ I+++S    G  S+A      FP  L+ R + G
Sbjct: 61  LGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTG 114

Length = 406

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 16  PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRR-VIMLISFYGQGAISIA 74
           P+ L  +          +++L+ LG ILG++  GLL+DR GRR +++LI         + 
Sbjct: 199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL 258

Query: 75  IVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWR 115
           +    S  + L+   + GF +     +  TL  EL P   R
Sbjct: 259 LALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEAR 299

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 31  AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLIS-FYGQGAISIAIVYNRSFPVYLILRT 89
           A +V    +G I+G    G L D  GRR   + S   GQ  I        +  V  +   
Sbjct: 277 ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF 336

Query: 90  MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYT 122
            Q   VQG+       L E FPT  R     +T
Sbjct: 337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 29  WNAAVVTLYFLGV----ILGSIPAGLLADRFG-RRVIMLISFYGQGAISIAIVY--NRSF 81
            ++  + L  + +     LG+I AG L +RFG + V+M+        +SIA +Y      
Sbjct: 285 LSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLV----ILSIAALYLIFLEG 340

Query: 82  PV-YLILRTMQGFFVQGLQNSTYTLLIELFP 111
            + + IL  + G  + G Q S+ + L  L P
Sbjct: 341 ELDFWILGLLVGTSLGGAQASSRSYLARLVP 371

Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
TIGR00898	505	2A0119 cation transport protein.	99.9
KOG0255|consensus	521		99.89
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.87
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.85
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.84
KOG0569|consensus	485		99.84
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.84
KOG0254|consensus	513		99.82
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.82
TIGR00891	405	2A0112 putative sialic acid transporter.	99.8
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.79
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.79
PRK10642	490	proline/glycine betaine transporter; Provisional	99.78
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.78
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.77
TIGR00893	399	2A0114 d-galactonate transporter.	99.77
PRK03545	390	putative arabinose transporter; Provisional	99.77
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.77
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.76
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.76
TIGR00895	398	2A0115 benzoate transport.	99.76
PRK11663	434	regulatory protein UhpC; Provisional	99.76
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.76
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.75
KOG1330|consensus	493		99.74
PRK12307	426	putative sialic acid transporter; Provisional	99.74
PRK10091	382	MFS transport protein AraJ; Provisional	99.74
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.74
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.73
PRK09952	438	shikimate transporter; Provisional	99.73
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.73
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.73
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.73
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.72
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.72
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.72
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.71
TIGR00900	365	2A0121 H+ Antiporter protein.	99.71
KOG2533|consensus	495		99.71
PRK03893	496	putative sialic acid transporter; Provisional	99.71
PRK09705	393	cynX putative cyanate transporter; Provisional	99.71
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.7
KOG2532|consensus	466		99.7
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.7
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.69
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.68
PRK11043	401	putative transporter; Provisional	99.67
PLN00028	476	nitrate transmembrane transporter; Provisional	99.67
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.67
PRK12382	392	putative transporter; Provisional	99.66
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.66
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.66
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.66
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.66
KOG2615|consensus	451		99.65
KOG0253|consensus	528		99.65
PRK10054	395	putative transporter; Provisional	99.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.65
PRK03699	394	putative transporter; Provisional	99.65
PRK15075	434	citrate-proton symporter; Provisional	99.64
PRK05122	399	major facilitator superfamily transporter; Provisi	99.64
PRK10504	471	putative transporter; Provisional	99.64
PRK10642	490	proline/glycine betaine transporter; Provisional	99.63
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.63
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.62
PTZ00207	591	hypothetical protein; Provisional	99.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.61
PRK10133	438	L-fucose transporter; Provisional	99.61
PRK09874	408	drug efflux system protein MdtG; Provisional	99.61
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.59
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.59
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.57
KOG0252|consensus	538		99.57
PRK03633	381	putative MFS family transporter protein; Provision	99.56
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.56
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.55
PRK10489	417	enterobactin exporter EntS; Provisional	99.55
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.55
KOG3764|consensus	464		99.54
TIGR00805	633	oat sodium-independent organic anion transporter.	99.53
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.53
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.51
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.49
TIGR00901	356	2A0125 AmpG-related permease.	99.48
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.48
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.44
PRK15011	393	sugar efflux transporter B; Provisional	99.43
PRK11902	402	ampG muropeptide transporter; Reviewed	99.41
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.39
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.38
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.37
PRK15011	393	sugar efflux transporter B; Provisional	99.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.37
PRK09528	420	lacY galactoside permease; Reviewed	99.35
PRK11010	491	ampG muropeptide transporter; Validated	99.35
PRK05122	399	major facilitator superfamily transporter; Provisi	99.32
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.31
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.31
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.3
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.3
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.28
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.27
PRK03893	496	putative sialic acid transporter; Provisional	99.26
KOG0569|consensus	485		99.26
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.26
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.25
PRK10489	417	enterobactin exporter EntS; Provisional	99.25
PRK09874	408	drug efflux system protein MdtG; Provisional	99.25
PRK12382	392	putative transporter; Provisional	99.24
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.23
PRK09528	420	lacY galactoside permease; Reviewed	99.23
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.22
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.22
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.21
PRK09952	438	shikimate transporter; Provisional	99.21
TIGR00898	505	2A0119 cation transport protein.	99.2
KOG2504|consensus	509		99.19
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.18
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.16
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.16
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.15
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.15
PRK03699	394	putative transporter; Provisional	99.13
PRK09705	393	cynX putative cyanate transporter; Provisional	99.13
PRK03545	390	putative arabinose transporter; Provisional	99.11
PRK03633	381	putative MFS family transporter protein; Provision	99.09
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.08
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.07
TIGR00893	399	2A0114 d-galactonate transporter.	99.05
TIGR00891	405	2A0112 putative sialic acid transporter.	99.05
PLN00028	476	nitrate transmembrane transporter; Provisional	99.05
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.03
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.02
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.02
KOG0253|consensus	528		99.01
PRK10504	471	putative transporter; Provisional	99.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.99
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.98
PRK12307	426	putative sialic acid transporter; Provisional	98.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.97
TIGR00900	365	2A0121 H+ Antiporter protein.	98.96
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.96
TIGR00895	398	2A0115 benzoate transport.	98.95
PRK11010	491	ampG muropeptide transporter; Validated	98.95
PRK15075	434	citrate-proton symporter; Provisional	98.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.94
KOG0254|consensus	513		98.92
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.92
PRK09848	448	glucuronide transporter; Provisional	98.9
PRK09669	444	putative symporter YagG; Provisional	98.88
PRK11663	434	regulatory protein UhpC; Provisional	98.88
PRK10429	473	melibiose:sodium symporter; Provisional	98.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.84
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.84
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.83
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.82
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.81
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.8
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.79
KOG2325|consensus	488		98.79
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.78
PRK09669	444	putative symporter YagG; Provisional	98.77
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.77
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.76
PRK10054	395	putative transporter; Provisional	98.76
PRK10091	382	MFS transport protein AraJ; Provisional	98.75
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.75
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.73
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.72
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.71
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.71
PRK10429	473	melibiose:sodium symporter; Provisional	98.7
PF13347	428	MFS_2: MFS/sugar transport protein	98.7
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.7
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.67
PRK11902	402	ampG muropeptide transporter; Reviewed	98.67
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.66
TIGR00901	356	2A0125 AmpG-related permease.	98.66
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.66
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.65
COG0477	338	ProP Permeases of the major facilitator superfamil	98.64
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.63
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.61
PRK10133	438	L-fucose transporter; Provisional	98.6
KOG2504|consensus	509		98.6
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.59
COG2211	467	MelB Na+/melibiose symporter and related transport	98.58
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.56
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.56
PRK11462	460	putative transporter; Provisional	98.56
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.56
PF13347	428	MFS_2: MFS/sugar transport protein	98.54
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.54
KOG2816|consensus	463		98.52
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.52
PRK11462	460	putative transporter; Provisional	98.51
KOG0252|consensus	538		98.51
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.49
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.48
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.44
KOG4686|consensus	459		98.43
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.43
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.43
PRK11043	401	putative transporter; Provisional	98.4
PRK09848	448	glucuronide transporter; Provisional	98.4
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.36
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.36
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.34
KOG0255|consensus	521		98.33
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.31
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.3
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.28
KOG2563|consensus	480		98.23
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.22
KOG3762|consensus	618		98.2
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.18
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.14
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.13
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.11
COG2211	467	MelB Na+/melibiose symporter and related transport	98.08
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.07
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.06
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.91
KOG3764|consensus	464		97.81
PTZ00207	591	hypothetical protein; Provisional	97.8
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.78
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.73
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.69
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.67
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.63
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.62
KOG2532|consensus	466		97.59
KOG2533|consensus	495		97.57
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.55
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.46
KOG3626|consensus	735		97.43
KOG4686|consensus	459		97.26
PF12832	77	MFS_1_like: MFS_1 like family	97.25
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.09
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.07
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.06
KOG4332|consensus	454		97.03
KOG2816|consensus	463		96.95
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.95
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.91
KOG3098|consensus	461		96.81
KOG2615|consensus	451		96.36
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.29
PRK03612	521	spermidine synthase; Provisional	96.26
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.98
KOG1237|consensus	571		95.98
KOG0637|consensus	498		95.87
KOG3098|consensus	461		95.21
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.91
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.69
KOG2563|consensus	480		93.16
COG3202	509	ATP/ADP translocase [Energy production and convers	92.87
KOG3762|consensus	618		92.73
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.48
KOG1330|consensus	493		91.32
KOG3574|consensus	510		90.01
KOG0637|consensus	498		89.52
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	88.44
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	87.55
KOG3810|consensus	433		86.85
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	83.81
KOG1479|consensus	406		83.12
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	82.76
KOG1479|consensus	406		82.5
TIGR01666	704	YCCS hypothetical membrane protein, TIGR01666. Thi	82.33
TIGR00805	633	oat sodium-independent organic anion transporter.	81.06
KOG3880|consensus	409		81.01

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=1.6e-22  Score=182.44  Aligned_cols=174  Identities=29%  Similarity=0.570  Sum_probs=157.8

Q ss_pred             CcceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy12153         14 GEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGF   93 (236)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   93 (236)
                      .++.+||++.|++..+.++..+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++.|+
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~  192 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGM  192 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            46789999988889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhHHH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFV  173 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~w~~~~~i~~~~~~  173 (236)
                      +.+...+....++.|++|+++|                  +...++...+..+|.++++.++..+.+||+.+++.+++. 
T Consensus       193 ~~~~~~~~~~~~~~e~~~~~~r------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~-  253 (505)
T TIGR00898       193 GIGGIWVQAVVLNTEFLPKKQR------------------AIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPT-  253 (505)
T ss_pred             hccchHHHHHHHhheecChhhh------------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence            9999999999999999999999                  999999999999999999999988888999999998887 


Q ss_pred             HHHHHHHhhcccchhHHHhcCCHhHHHHHHHHh
Q psy12153        174 GFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDE  206 (236)
Q Consensus       174 ~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~  206 (236)
                      ++..+..+++||+|+|...+++.+++.+..++.
T Consensus       254 ~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~  286 (505)
T TIGR00898       254 FLFFLLSWFVPESPRWLISQGRIEEALKILQRI  286 (505)
T ss_pred             HHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHH
Confidence            444455578999999998888877776655543

>KOG0255|consensus

Probab=99.89  E-value=6.6e-22  Score=179.41  Aligned_cols=175  Identities=27%  Similarity=0.447  Sum_probs=152.9

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      ++..+|++.|.+.....+..+++++|..+|++++|.++||+|||++++++.++..++.++.++++|++.+++.|++.|++
T Consensus       105 s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~  184 (521)
T KOG0255|consen  105 SIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFF  184 (521)
T ss_pred             cccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            45677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhHHHH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVG  174 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~w~~~~~i~~~~~~~  174 (236)
                      .++.......++.|+.++++|                  +....+....+..|.++.+..+....+||+.+++..++. +
T Consensus       185 ~~~~~~~~~~~~~E~~~~~~R------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~-~  245 (521)
T KOG0255|consen  185 GSGPLTVGFGLVAEIVSPKQR------------------GLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPS-G  245 (521)
T ss_pred             ccchhHHhHhhheeecCcchh------------------hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-H
Confidence            999999999999999999999                  888888444555555555555555668999999999998 4


Q ss_pred             HHHHHHhhcccchhHHHhcCCHhHHHHHHHHhhh
Q psy12153        175 FSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESH  208 (236)
Q Consensus       175 ~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~  208 (236)
                      ..++.+++.||+|||...+++.+++.+.+++..+
T Consensus       246 ~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~  279 (521)
T KOG0255|consen  246 LFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAK  279 (521)
T ss_pred             HHHHHHHccCcChHHHHHcCchHHHHHHHHHHHh
Confidence            4444577777999999999999888887776543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.87  E-value=5.4e-21  Score=178.54  Aligned_cols=171  Identities=19%  Similarity=0.297  Sum_probs=151.3

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   95 (236)
                      +..++++   +..+.+++.+++.++.+++++++|+++||+|||+.++++.++.+++.++.+++++++.++++|++.|++.
T Consensus       193 i~~~~gl---s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~  269 (742)
T TIGR01299       193 AEKDLCI---PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGI  269 (742)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3457888   8899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc----------------c
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF----------------P  159 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~----------------~  159 (236)
                      ++..+....++.|++|++.|                  +...++...++.+|.++++.++..+                .
T Consensus       270 g~~~p~~~~~isE~~p~~~R------------------g~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~  331 (742)
T TIGR01299       270 GGAIPIVFSYFAEFLAQEKR------------------GEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFH  331 (742)
T ss_pred             HHHHHHHHHHHHHHCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccc
Confidence            99999999999999999999                  9999999999999999888765432                2


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHhhcccchhHHHhcCCHhHHHHHHHHhhh
Q psy12153        160 NWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESH  208 (236)
Q Consensus       160 ~w~~~~~i~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~  208 (236)
                      +||+.+++.+++. ++.++..+++||||+|+..+++.+++.+.+++..+
T Consensus       332 gWR~l~~i~~lp~-ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~  379 (742)
T TIGR01299       332 SWRVFVIVCAFPC-VFAIGALTFMPESPRFFLENGKHDEAWMILKLIHD  379 (742)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhc
Confidence            5899888877766 66677788899999999999998888877766543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.85  E-value=5e-20  Score=166.50  Aligned_cols=153  Identities=19%  Similarity=0.222  Sum_probs=133.5

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHhhhhhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRS------FPVYLILRTMQGFFVQGLQ   99 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~   99 (236)
                      +..+.+++.+.+.++..++++++|+++||+|||+++.++.++..++.++.+++++      ++.++++|+++|++.|...
T Consensus        54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~  133 (502)
T TIGR00887        54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY  133 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence            5567789999999999999999999999999999999999999999888887665      6789999999999999999


Q ss_pred             HHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc---------------------
Q psy12153        100 NSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF---------------------  158 (236)
Q Consensus       100 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~---------------------  158 (236)
                      +....++.|++|+++|                  ++..++.+....+|..+++.++..+                     
T Consensus       134 ~~~~~~~~e~~p~~~R------------------g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (502)
T TIGR00887       134 PLSAIITSEFATKKWR------------------GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSC  195 (502)
T ss_pred             HHHHHHHHHhcChhhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence            9999999999999999                  9999999999999998888776432                     


Q ss_pred             -----chhHHHHHHHHhHHHHHHHHHHhhcccchhHHHhcCCHh
Q psy12153        159 -----PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKII  197 (236)
Q Consensus       159 -----~~w~~~~~i~~~~~~~~~~~~~~~~pet~~~~~~~~~~~  197 (236)
                           .+||+++.+.+++. ++.++..+++||||+|...+++.+
T Consensus       196 ~~~~~~~WR~~~~~~~ip~-~i~~~~~~~lpESpr~l~~~~~~~  238 (502)
T TIGR00887       196 VPAVDYMWRILIGFGAVPA-LLALYFRLTIPETPRYTADVAKDV  238 (502)
T ss_pred             cchhcccHHHHHHHHHHHH-HHHHHHHHhCCCCHHHHHHhCcch
Confidence                 15999998777776 566666788999999998777653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.84  E-value=6.1e-20  Score=162.10  Aligned_cols=153  Identities=18%  Similarity=0.237  Sum_probs=140.4

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+|+++   +..+.++..+++.+++.+++++.|+++||+|||+++..+.++..+++...++++|++.+++.|++.|++
T Consensus        33 ~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  109 (412)
T TIGR02332        33 TMGKDLGL---SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIA  109 (412)
T ss_pred             hhHhhcCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            45689999   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc---------chhHHHH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF---------PNWRDAE  165 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~---------~~w~~~~  165 (236)
                      .+...+....++.|++|+++|                  ++..++.+....+|..+++.+++++         .+||+.|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~r------------------g~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f  171 (412)
T TIGR02332       110 EAGFLPGILLYLTFWFPAYFR------------------ARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLF  171 (412)
T ss_pred             HhhHHHHHHHHHHHHcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHH
Confidence            999888888999999999999                  9999999999999999999887764         2899999


Q ss_pred             HHHHhHHHHHHHHHHhhcccchh
Q psy12153        166 LVTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       166 ~i~~~~~~~~~~~~~~~~pet~~  188 (236)
                      ++.+++.++..++.++++||+|+
T Consensus       172 ~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       172 LLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHhhccCCCcc
Confidence            99888886667777788899985

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0569|consensus

Probab=99.84  E-value=8.6e-20  Score=161.94  Aligned_cols=163  Identities=22%  Similarity=0.308  Sum_probs=142.1

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         29 WNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY---NRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      ..+.+++++.+|.++|++..++++||+|||..++++.++..++.+.+..   .+++..++++|++.|+..|........+
T Consensus        61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy  140 (485)
T KOG0569|consen   61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY  140 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            4588889999999999999999999999999999998888888877765   5678899999999999999999999999


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHh--cc---hhHHHHHHHHhHHHHHHHHHH
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYW--FP---NWRDAELVTSLPFVGFSLFYV  180 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~--~~---~w~~~~~i~~~~~~~~~~~~~  180 (236)
                      +.|..|++.|                  |....+.+.+..+|.+++..++.-  +.   .|.+.+....++. ++.++..
T Consensus       141 l~E~sP~~~R------------------G~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~-~~~l~~l  201 (485)
T KOG0569|consen  141 LTEISPKNLR------------------GALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA-LLQLALL  201 (485)
T ss_pred             HhhcChhhhc------------------cHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH-HHHHHHH
Confidence            9999999999                  999999999999999999766543  22   5988888888877 7778888


Q ss_pred             hhcccchhHHHh-cCCHhHHHHHHHHhhhhc
Q psy12153        181 WFIPESPLWKYT-KNKIIDFEYLCDDESHRE  210 (236)
Q Consensus       181 ~~~pet~~~~~~-~~~~~~~~~~~~~~~~~~  210 (236)
                      .++||||||+.. |++.+++++.++..+..+
T Consensus       202 ~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~  232 (485)
T KOG0569|consen  202 PFLPESPKYLLIKKGDEEEARKALKFYRGKE  232 (485)
T ss_pred             hcCCCCcchHHHHcCCHHHHHHHHHHHhCCC
Confidence            999999999987 788889988877665544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.84  E-value=2.6e-19  Score=160.23  Aligned_cols=161  Identities=20%  Similarity=0.291  Sum_probs=134.9

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh------------ccHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN------------RSFPVYLI   86 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~   86 (236)
                      ++++   +..+.+++.+++.++..++++++|+++||+|||++++++.++..++.+..++.            ++.+.+++
T Consensus        49 ~~~~---~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~  125 (479)
T PRK10077         49 SESA---ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI  125 (479)
T ss_pred             cccC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHH
Confidence            3466   78899999999999999999999999999999999999999988887776652            22456789


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc--------
Q psy12153         87 LRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF--------  158 (236)
Q Consensus        87 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~--------  158 (236)
                      .|+++|++.|...+....+++|++|+++|                  ++..++.+.+..+|.++++.++..+        
T Consensus       126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~r------------------g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  187 (479)
T PRK10077        126 YRIIGGIGVGLASMLSPMYIAEIAPAHIR------------------GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASW  187 (479)
T ss_pred             HHHHHhhhHhHHhhHHHHHHHhhCChhhh------------------hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            99999999999999999999999999999                  9999999999999999888776533        


Q ss_pred             ---chhHHHHHHHHhHHHHHHHHHHhhcccchhHHHhcCCHhHHHH
Q psy12153        159 ---PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEY  201 (236)
Q Consensus       159 ---~~w~~~~~i~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~  201 (236)
                         .+||+.|++.+++. ++..+..+++||+|++...+++.+++..
T Consensus       188 ~~~~gWr~~f~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~  232 (479)
T PRK10077        188 LNTDGWRYMFASEAIPA-LLFLMLLYFVPETPRYLMSRGKQEQAEG  232 (479)
T ss_pred             cccCChHHHHHHHHHHH-HHHHHHHHcCCCCcHHHHHcCCHHHHHH
Confidence               27999999888777 4445567789999998766666555433

>KOG0254|consensus

Probab=99.82  E-value=3.2e-19  Score=161.73  Aligned_cols=162  Identities=23%  Similarity=0.327  Sum_probs=147.8

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12153         28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLI  107 (236)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  107 (236)
                      .+.+++.+...++..+++++.|.++|++|||++++++.+...++.++.++++|...++++|++.|++.|......+.+.+
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            35589999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             hhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHHHHHHHHHHhhc
Q psy12153        108 ELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPFVGFSLFYVWFI  183 (236)
Q Consensus       108 e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~~~~~~~~~~~~  183 (236)
                      |..|++.|                  |...+..++...+|..++..++....    +||..+.+..+++++..+. .+++
T Consensus       169 Eiap~~~R------------------G~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~  229 (513)
T KOG0254|consen  169 EIAPAHIR------------------GTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFL  229 (513)
T ss_pred             hcCChhhh------------------HHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhC
Confidence            99999999                  99999999999999999977777774    6999998888888555555 8999


Q ss_pred             ccchhHHHhcCCHhHHHHHHHHhhh
Q psy12153        184 PESPLWKYTKNKIIDFEYLCDDESH  208 (236)
Q Consensus       184 pet~~~~~~~~~~~~~~~~~~~~~~  208 (236)
                      ||+|+|..++++.++++..+.....
T Consensus       230 pesp~~L~~~g~~~~a~~~l~~l~g  254 (513)
T KOG0254|consen  230 PESPRWLIEKGRLEEAKRSLKRLRG  254 (513)
T ss_pred             CCChHHHHHcCChHHHHHHHHHHhC
Confidence            9999999999999998888776655

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.82  E-value=6.1e-19  Score=153.65  Aligned_cols=154  Identities=11%  Similarity=0.008  Sum_probs=128.7

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+||++   +..+.+++.+.+.+++.+++++.|+++||+|||++++.+......+.......+++..+++.|+++|++
T Consensus        16 ~i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g   92 (368)
T TIGR00903        16 LVAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALG   92 (368)
T ss_pred             HHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhH
Confidence            55678999   999999999999999999999999999999999987655544444333223337899999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+. .......++|++|+++|                  +++.++.+.+..+|..+++.++..+.   +||+.|++.+++
T Consensus        93 ~~~-~~~~~~~~~~~~~~~~r------------------~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l  153 (368)
T TIGR00903        93 QPF-LLNAFAPAASQIREERR------------------DLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAV  153 (368)
T ss_pred             hHH-HHHHHHHHHHHcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            875 45556667999999999                  99999999999999999999888874   899999998888


Q ss_pred             HHHHHHHHHhhcccchhHH
Q psy12153        172 FVGFSLFYVWFIPESPLWK  190 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~~~  190 (236)
                      +++..++.++++||+|++.
T Consensus       154 ~~~~~~~~~~~lp~~p~~~  172 (368)
T TIGR00903       154 AAAGIILVLAALPALPFQA  172 (368)
T ss_pred             HHHHHHHHHHHcCCCCCCC
Confidence            8677777888899988653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.80  E-value=3.3e-18  Score=149.02  Aligned_cols=154  Identities=25%  Similarity=0.347  Sum_probs=136.0

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++++   +..+.+++.+++.++..+++++.|+++||+|||++++++.++..++++...+.++++.+++.|++.|++
T Consensus        37 ~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  113 (405)
T TIGR00891        37 EVAGEFGL---TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIG  113 (405)
T ss_pred             HHHHHhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            45678888   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-----hhHHHHHHHH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-----NWRDAELVTS  169 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-----~w~~~~~i~~  169 (236)
                      .+...+....++.|++|+++|                  ++..++.+....+|..+++.+...+.     +||+.|++.+
T Consensus       114 ~~~~~~~~~~~i~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~  175 (405)
T TIGR00891       114 MGGEYGSSAAYVIESWPKHLR------------------NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISI  175 (405)
T ss_pred             hhhhhHHHHHHHHHhCChhhh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            999999999999999999999                  99999999999999999998877653     3999998766


Q ss_pred             hHHHHHHHHHHhhcccchhHH
Q psy12153        170 LPFVGFSLFYVWFIPESPLWK  190 (236)
Q Consensus       170 ~~~~~~~~~~~~~~pet~~~~  190 (236)
                      +.. +..++....+||++++.
T Consensus       176 ~~~-~~~~~~~~~~~~~~~~~  195 (405)
T TIGR00891       176 LPI-IFALWLRKNIPEAEDWK  195 (405)
T ss_pred             HHH-HHHHHHHHhCCCChhHH
Confidence            555 45555666789987654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.79  E-value=5e-18  Score=149.97  Aligned_cols=153  Identities=19%  Similarity=0.189  Sum_probs=134.4

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.++++.   +..+.++..+++.+++.++++++|+++||+|||++++.+.++..++.+....+++++.+++.|+++|++
T Consensus        41 ~i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~  117 (413)
T PRK15403         41 NVVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTS  117 (413)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45678888   999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|.+++++|                  ++..+.......+|..++|.+++.+.   +||+.|++.++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~  179 (413)
T PRK15403        118 ICFIATVGYVTVQEAFGQTKG------------------IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVM  179 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            876666677889999999888                  89999999999999999998887664   799999998888


Q ss_pred             HHHHHHHHHhhcccchh
Q psy12153        172 FVGFSLFYVWFIPESPL  188 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~  188 (236)
                      .++..+...+.+||+++
T Consensus       180 ~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        180 GLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHhCCCCcc
Confidence            75555555667898754

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.79  E-value=4.7e-22  Score=176.78  Aligned_cols=161  Identities=27%  Similarity=0.474  Sum_probs=144.4

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhhhhhhHHHH
Q psy12153         27 CKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR---SFPVYLILRTMQGFFVQGLQNSTY  103 (236)
Q Consensus        27 ~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~  103 (236)
                      ....++..+...+|..+|++++|.++||+|||++++++.++..++.++..+++   +++.+.++|++.|++.|+..+...
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45678999999999999999999999999999999999999999999999999   999999999999999999999999


Q ss_pred             HHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---h---hHHHHHHHHhHHHHHHH
Q psy12153        104 TLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---N---WRDAELVTSLPFVGFSL  177 (236)
Q Consensus       104 ~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~---w~~~~~i~~~~~~~~~~  177 (236)
                      .++.|..|++.|                  +....+.+..+.+|.+++..+...+.   +   ||..+++..++. +..+
T Consensus       125 ~~~~E~~~~~~R------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~-l~~~  185 (451)
T PF00083_consen  125 IYISEIAPPKHR------------------GFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPS-LLVL  185 (451)
T ss_pred             cccccccccccc------------------ccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            999999999999                  99999999999999988887765542   4   999998888887 5556


Q ss_pred             HHHhhcccchhHHHhcCCHhHHHHHHHHh
Q psy12153        178 FYVWFIPESPLWKYTKNKIIDFEYLCDDE  206 (236)
Q Consensus       178 ~~~~~~pet~~~~~~~~~~~~~~~~~~~~  206 (236)
                      +..+++||||+|...+++.+++.+..++.
T Consensus       186 ~~~~~~pESP~wL~~~~~~~~A~~~l~~~  214 (451)
T PF00083_consen  186 LLRFFLPESPRWLLSKGRDEEAEKVLRKL  214 (451)
T ss_pred             ccccccccccceecccccccccccccccc
Confidence            67788999999999999888888777663

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.78  E-value=7.6e-18  Score=151.89  Aligned_cols=139  Identities=22%  Similarity=0.265  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHhhhhhhHHHHHH
Q psy12153         34 VTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPV--------YLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        34 ~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      .++..++..++++++|+++||+|||+++.++.++.+++++++++++++..        +++.|+++|++.|+.++....+
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            47788999999999999999999999999999999999999999999864        7889999999999999999999


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHhHHHH
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF-----------PNWRDAELVTSLPFVG  174 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~-----------~~w~~~~~i~~~~~~~  174 (236)
                      +.|++|+++|                  ++..++.+.+..+|..+++.+...+           .+||+.|++.+++. +
T Consensus       143 ~~e~~p~~~R------------------g~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~-l  203 (490)
T PRK10642        143 VAEYSPDRKR------------------GFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLG-I  203 (490)
T ss_pred             HHHhCCCCCC------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHH-H
Confidence            9999999999                  9999998888888887777554322           27999999877655 4


Q ss_pred             HHHHHHhhcccchhHHH
Q psy12153        175 FSLFYVWFIPESPLWKY  191 (236)
Q Consensus       175 ~~~~~~~~~pet~~~~~  191 (236)
                      +.++....+||+|++..
T Consensus       204 ~~~~~~~~~~esp~~~~  220 (490)
T PRK10642        204 IGLYLRHALEETPAFQQ  220 (490)
T ss_pred             HHHHHHHcCCCChhHHH
Confidence            55556677899998753

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.78  E-value=7.8e-18  Score=145.65  Aligned_cols=149  Identities=20%  Similarity=0.176  Sum_probs=142.3

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+|+++   +....|+..+.|.++..+++++...+.||+.||++++..+.+..+++++.++++|++.++++|++.|+.
T Consensus        38 ~iA~dl~v---s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a  114 (394)
T COG2814          38 PIAADLGV---SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLA  114 (394)
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56789999   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .|..++....+..++.|+++|                  +++.+....+..++.++|..++.++.   |||..|+..+.+
T Consensus       115 ~G~f~~i~~~~a~~lvpp~~~------------------~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l  176 (394)
T COG2814         115 HGVFWSIAAALAARLVPPGKR------------------GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVL  176 (394)
T ss_pred             HHHHHHHHHHHHHHHcCccch------------------hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999999                  99999999999999999988888885   899999999999


Q ss_pred             HHHHHHHHHhhcc
Q psy12153        172 FVGFSLFYVWFIP  184 (236)
Q Consensus       172 ~~~~~~~~~~~~p  184 (236)
                      +++..+..+..+|
T Consensus       177 ~ll~~~~~~~~lP  189 (394)
T COG2814         177 ALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHhCC
Confidence            9788888888899

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.77  E-value=1.2e-17  Score=147.77  Aligned_cols=154  Identities=23%  Similarity=0.353  Sum_probs=132.1

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhhhhhhHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR---SFPVYLILRTMQGFFVQGLQNST  102 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~  102 (236)
                      +..+.+++.+++.++..++++++|+++||+|||++++++.++..++..+.....   +++.+++.|++.|++.+...+..
T Consensus        69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  148 (481)
T TIGR00879        69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV  148 (481)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence            478999999999999999999999999999999999999999999888886543   44588999999999999999999


Q ss_pred             HHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHH---Hhc---chhHHHHHHHHhHHHHHH
Q psy12153        103 YTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVS---YWF---PNWRDAELVTSLPFVGFS  176 (236)
Q Consensus       103 ~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~---~~~---~~w~~~~~i~~~~~~~~~  176 (236)
                      ..++.|++|+++|                  ++..++.+.+..+|..+++.++   ...   .+||+.|++.++.. +..
T Consensus       149 ~~~i~~~~~~~~r------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~-~~~  209 (481)
T TIGR00879       149 PMYLSEIAPKALR------------------GALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPA-GLL  209 (481)
T ss_pred             HHHHHccCChhhh------------------hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHH-HHH
Confidence            9999999999999                  9999999999999999999998   443   28999999866655 556


Q ss_pred             HHHHhhcccchhHHHhcCCHhH
Q psy12153        177 LFYVWFIPESPLWKYTKNKIID  198 (236)
Q Consensus       177 ~~~~~~~pet~~~~~~~~~~~~  198 (236)
                      ++..+++||+|++...+++.++
T Consensus       210 ~~~~~~l~~~~~~~~~~~~~~~  231 (481)
T TIGR00879       210 FLGLFFLPESPRWLVGKGRVEE  231 (481)
T ss_pred             HHHHhcCCCChHHHHHcCChHH
Confidence            6667788999887655554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.77  E-value=4.2e-18  Score=146.91  Aligned_cols=153  Identities=18%  Similarity=0.288  Sum_probs=137.6

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++++   +..+.+++.+++.++..++.++.|+++||+|||+++.++.++..++....++.++++.+++.|++.|++
T Consensus        19 ~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   95 (399)
T TIGR00893        19 MLQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAA   95 (399)
T ss_pred             HHHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            34567888   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|++|+++|                  ++..+..+....+|..+++.+.+.+.   +||+.|++.++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  157 (399)
T TIGR00893        96 EAPFFPGIILIVASWFPASER------------------ATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL  157 (399)
T ss_pred             HHhhhhHHHHHHHHhCCHHHH------------------HHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            999999999999999999999                  99999999999999999999888653   799999988888


Q ss_pred             HHHHHHHHHhhcccchh
Q psy12153        172 FVGFSLFYVWFIPESPL  188 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~  188 (236)
                      .++..++..++.||+|+
T Consensus       158 ~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       158 GIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHhhheecCCCC
Confidence            75666666667777654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.77  E-value=1.5e-17  Score=145.57  Aligned_cols=152  Identities=20%  Similarity=0.173  Sum_probs=137.1

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.++..+.+.+++.+++++.|.++||+|||+++..+.++.++++..+.+.+|++.+++.|+++|++
T Consensus        34 ~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~  110 (390)
T PRK03545         34 DIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFA  110 (390)
T ss_pred             HHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45678999   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|++|+++|                  ++..++...+..+|..++|.++..+.   +||+.|++.+++
T Consensus       111 ~~~~~~~~~~~i~~~~~~~~r------------------~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~  172 (390)
T PRK03545        111 HAIFWSITASLAIRVAPAGKK------------------AQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGG  172 (390)
T ss_pred             HHHHHHHHHHHHHHhCChhhh------------------hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHH
Confidence            888888889999999999999                  99999999999999999999887763   899999999888


Q ss_pred             HHHHHHHHHhhcccch
Q psy12153        172 FVGFSLFYVWFIPESP  187 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~  187 (236)
                      .++..+.....+||.|
T Consensus       173 ~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        173 ALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            7556556666677754

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.77  E-value=1.7e-17  Score=145.56  Aligned_cols=156  Identities=22%  Similarity=0.271  Sum_probs=138.3

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++++   +..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+...+.++++.+++.|++.|++
T Consensus        40 ~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  116 (406)
T PRK11551         40 RMAQEFGL---DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVG  116 (406)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            45678888   999999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|++|+++|                  ++..++.+....+|..+++.++..+.   +|++.|++.++.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (406)
T PRK11551        117 LGGALPNLIALTSEAVGPRLR------------------GTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVG  178 (406)
T ss_pred             HHHHHHHHHHHHHHHcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            998888899999999999999                  99999999999999999998876653   699999888777


Q ss_pred             HHHHHHHHHhhcccchhHHH
Q psy12153        172 FVGFSLFYVWFIPESPLWKY  191 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~~~~  191 (236)
                      .++..++..+++||+|++..
T Consensus       179 ~~~~~~~~~~~l~~~~~~~~  198 (406)
T PRK11551        179 PLLLVPLLMRWLPESRAFAQ  198 (406)
T ss_pred             HHHHHHHHHHhCCCChhHHh
Confidence            65555666677899876543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.76  E-value=2.1e-17  Score=146.73  Aligned_cols=139  Identities=22%  Similarity=0.188  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHH--------HHHHHHHHHHHhhhhhhHHHHH
Q psy12153         33 VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFP--------VYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        33 ~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      ..+..+++..++++++|+++||+|||+++.++.++.+++++++++.+++.        .+++.|+++|++.|+.++....
T Consensus        68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~  147 (432)
T PRK10406         68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT  147 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH
Confidence            33445555569999999999999999999999999999999999888764        5888999999999999999999


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHhHHH
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF-----------PNWRDAELVTSLPFV  173 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~-----------~~w~~~~~i~~~~~~  173 (236)
                      ++.|++|+++|                  ++..+..+.+...|..+++.+...+           .+||++|++.+++. 
T Consensus       148 ~i~e~~p~~~r------------------g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~-  208 (432)
T PRK10406        148 YMSEVAVEGRK------------------GFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLA-  208 (432)
T ss_pred             HHHHhCCCCcc------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH-
Confidence            99999999999                  9888888888888877776554322           38999999877776 


Q ss_pred             HHHHHHHhhcccchhHH
Q psy12153        174 GFSLFYVWFIPESPLWK  190 (236)
Q Consensus       174 ~~~~~~~~~~pet~~~~  190 (236)
                      ++.++....+||+|++.
T Consensus       209 ll~~~~~~~~~e~~~~~  225 (432)
T PRK10406        209 VVALWLRRQLDETSQQE  225 (432)
T ss_pred             HHHHHHHhcCCCCchHH
Confidence            44455566688887643

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.76  E-value=1.4e-17  Score=150.35  Aligned_cols=153  Identities=14%  Similarity=0.099  Sum_probs=136.4

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      ++.+|+|.   +..+.+|+.+.+.++..++.+++|+++||+|||++++++.++..++++.++.++|.+.++++|+++|++
T Consensus        31 ~i~~~l~~---s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g  107 (495)
T PRK14995         31 TLSMTLGA---SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIG  107 (495)
T ss_pred             HHHHHhCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            56678888   899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhc-CccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELF-PTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~  170 (236)
                      .+...+.....+.+.+ |+++|                  ++..++......+|..++|.+++.+.   +||+.|++...
T Consensus       108 ~~~~~~~~~~~l~~~~~~~~~r------------------~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~  169 (495)
T PRK14995        108 AAMIVPATLAGIRATFTEEKQR------------------NMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVP  169 (495)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence            9888887777776765 67888                  99999999999999999999998884   89999998887


Q ss_pred             HHHHHHHHHHhhcccchh
Q psy12153        171 PFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet~~  188 (236)
                      +.++..++..+++||.++
T Consensus       170 ~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        170 IVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHhCCCCCC
Confidence            775666667777888653

>TIGR00895 2A0115 benzoate transport

Probab=99.76  E-value=2.1e-17  Score=143.32  Aligned_cols=158  Identities=23%  Similarity=0.345  Sum_probs=139.1

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.+++.+++.++..++.++.|+++||+|||+.++.+.++..++..+....++.+.+++.|++.|++
T Consensus        42 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  118 (398)
T TIGR00895        42 AISAEWGL---DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLG  118 (398)
T ss_pred             HHhhccCC---CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcc
Confidence            34567788   889999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|++|+++|                  ++..+.......+|..+++.+.+.+.   +|+..+++.++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~  180 (398)
T TIGR00895       119 LGGLMPNLNALVSEYAPKRFR------------------GTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIA  180 (398)
T ss_pred             cccchhhHHHHHHHHcCHHhh------------------chhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhH
Confidence            999999999999999999999                  99999999999999999999887763   789888888766


Q ss_pred             HHHHHHHHHhhcccchhHHHhc
Q psy12153        172 FVGFSLFYVWFIPESPLWKYTK  193 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~~~~~~  193 (236)
                      .++..++..+++||++++..++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~  202 (398)
T TIGR00895       181 PLLLLLLLMRFLPESIDFLVSK  202 (398)
T ss_pred             HHHHHHHHHHhCCCCChHHHhc
Confidence            6566667777889987765433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.76  E-value=1.3e-17  Score=148.18  Aligned_cols=154  Identities=20%  Similarity=0.276  Sum_probs=137.8

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.++++++.+..++++.+++.|++.|++
T Consensus        48 ~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~  124 (434)
T PRK11663         48 EMLADLGL---SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFF  124 (434)
T ss_pred             HHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            55678888   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .|...+....++.|++|+++|                  ++..++.+....+|..+++.+.+.+.   +||+.|++.+++
T Consensus       125 ~g~~~~~~~~~~~~~~~~~~r------------------g~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~  186 (434)
T PRK11663        125 QGWGWPVCAKLLTAWYSRTER------------------GGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGII  186 (434)
T ss_pred             HHccchHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            988888889999999999999                  99999999999999999998877663   899999988887


Q ss_pred             HHHHHHHHHhhcccchhH
Q psy12153        172 FVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~~  189 (236)
                      .++..++..+++||+|++
T Consensus       187 ~~~~~~~~~~~~~~~p~~  204 (434)
T PRK11663        187 AIVVGLFLCWRLRDKPQA  204 (434)
T ss_pred             HHHHHHHHHHHcCCCHhh
Confidence            755556666678888754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.76  E-value=3.7e-17  Score=143.57  Aligned_cols=151  Identities=16%  Similarity=0.157  Sum_probs=135.1

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   95 (236)
                      +.+++++   +..+.++..+++.++..++.++.|.++||+|||++++.+.++.+++.+.....++++.+++.|+++|++.
T Consensus        46 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  122 (394)
T PRK10213         46 MAQDLGI---SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL  122 (394)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence            4578888   9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      +...+....++.|++|+++|                  ++..+......++|..++|.+++.+.   +||+.|++.+++.
T Consensus       123 g~~~~~~~~~i~~~~~~~~~------------------~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~  184 (394)
T PRK10213        123 GGFWAMSASLTMRLVPPRTV------------------PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG  184 (394)
T ss_pred             HHHHHHHHHHHHHHcCHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            99999999999999999999                  99999999999999999999988774   8999999888776


Q ss_pred             HHHHHHHHhhcccch
Q psy12153        173 VGFSLFYVWFIPESP  187 (236)
Q Consensus       173 ~~~~~~~~~~~pet~  187 (236)
                      ++..++.....||+|
T Consensus       185 ~~~~l~~~~~~p~~~  199 (394)
T PRK10213        185 VLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHCCCCC
Confidence            444444445578764

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.75  E-value=2.3e-17  Score=140.94  Aligned_cols=152  Identities=24%  Similarity=0.351  Sum_probs=131.4

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   95 (236)
                      +.+++|.   +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++..+..++++.+.+++.|++.|++.
T Consensus        23 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   99 (352)
T PF07690_consen   23 LAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGS   99 (352)
T ss_dssp             HHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccc
Confidence            4567788   8999999999999999999999999999999999999999999999666666678888999999999999


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      +...+....++.|++|+++|                  ++..+..+....+|..+++.+++.+.   +||+.|++.++..
T Consensus       100 ~~~~~~~~~~i~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~  161 (352)
T PF07690_consen  100 GFFSPASNALIADWFPPEER------------------GRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS  161 (352)
T ss_dssp             HHHHHHHHHHHHHCCCTCCH------------------HHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred             ccccccccccccccchhhhh------------------hhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence            99999999999999999999                  99999999999999999999999885   7999999999888


Q ss_pred             HHHHHHHHhhcccchh
Q psy12153        173 VGFSLFYVWFIPESPL  188 (236)
Q Consensus       173 ~~~~~~~~~~~pet~~  188 (236)
                      ++..++..++++++++
T Consensus       162 ~~~~il~~~~~~~~~~  177 (352)
T PF07690_consen  162 LIAAILFILFLPEPPP  177 (352)
T ss_dssp             HHHHHHHHCCC---ST
T ss_pred             hhhhhhHhhhhhhccc
Confidence            5555554566665543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG1330|consensus

Probab=99.74  E-value=1.5e-19  Score=156.79  Aligned_cols=153  Identities=19%  Similarity=0.185  Sum_probs=143.9

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      ++.+.||+   +.+..|++++++.++.+++++++|+++||++||+++.+|..++.++.++.++++.+|.+++.|.+.|+|
T Consensus        58 ~v~~~fni---~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiG  134 (493)
T KOG1330|consen   58 EVQTYFNI---SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIG  134 (493)
T ss_pred             HHHHhcCC---CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            55667888   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~  170 (236)
                      .+...+..+.+++|.+|..+|                  ++..++++++..+|..+|.+++..+.    .|||.|++.++
T Consensus       135 eAs~~~ia~s~IaD~f~~~~R------------------s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~av  196 (493)
T KOG1330|consen  135 EASYSPIAPSLIADSFPDDKR------------------SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAV  196 (493)
T ss_pred             hhhhcccchhHhhhcCcchhh------------------hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehH
Confidence            999999999999999999999                  99999999999999999988887774    49999999999


Q ss_pred             HHHHHHHHHHhhcccchh
Q psy12153        171 PFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet~~  188 (236)
                      ++++++++..++.+|.+|
T Consensus       197 l~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  197 LGVIVGLLVFLFVREPER  214 (493)
T ss_pred             HHHHHHHHHHhhccCccc
Confidence            998889999999998764

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.74  E-value=6e-17  Score=142.94  Aligned_cols=153  Identities=22%  Similarity=0.253  Sum_probs=131.8

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.++..+++.++..+++++.|+++||+|||++++++.++.+++..+.++.++++.+++.|++.|++
T Consensus        43 ~i~~~~~~---s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g  119 (426)
T PRK12307         43 LIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMG  119 (426)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34568888   899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+..++....++.|++|+++|                  ++..++...+..+|.++++.+...+.   +||+.|++..+.
T Consensus       120 ~g~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        120 MAGEYACASTYAVESWPKHLK------------------SKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             HhhHHHHHHHHHHHhCCHhHh------------------hHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            999999999999999999999                  99999999999999999988776653   799999875443


Q ss_pred             HHHHHHHHHhhcccchhH
Q psy12153        172 FVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~~  189 (236)
                      . +..++.....||++++
T Consensus       182 ~-~~~~~~~~~~p~~~~~  198 (426)
T PRK12307        182 V-LLVIYIRARAPESKEW  198 (426)
T ss_pred             H-HHHHHHHHHCCCChHH
Confidence            3 3333333345776543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.74  E-value=8.3e-17  Score=140.55  Aligned_cols=152  Identities=14%  Similarity=0.147  Sum_probs=135.0

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+|+|+   +..+.++..+.+.++..+++++.|+++||+|||+++..+..+.+++.++.+.+++++.+++.|++.|++
T Consensus        28 ~~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~  104 (382)
T PRK10091         28 ELAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFP  104 (382)
T ss_pred             HHHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            45678888   899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|++++++|                  ++..+....+..+|..+++.++..+.   +||+.|++.++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~  166 (382)
T PRK10091        105 HGAFFGVGAIVLSKIIKPGKV------------------TAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF  166 (382)
T ss_pred             hHHHHHHHHHHHHHhCChHHh------------------hHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence            888888888889999998888                  88999999999999999888877663   799999998887


Q ss_pred             HHHHHHHHHhhcccch
Q psy12153        172 FVGFSLFYVWFIPESP  187 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~  187 (236)
                      .++..+...+.+||.+
T Consensus       167 ~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        167 NIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            7555555666788864

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.74  E-value=8.3e-17  Score=139.56  Aligned_cols=153  Identities=20%  Similarity=0.291  Sum_probs=136.5

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++++   +..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+.....++.+.+.+.|++.|++
T Consensus        30 ~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  106 (385)
T TIGR00710        30 EIAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG  106 (385)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            34577888   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|++|+++|                  ++..+..+....+|..+++.+++.+.   +||+.+++.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~  168 (385)
T TIGR00710       107 ASAGSVISQALVRDIYPGEEL------------------SRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA  168 (385)
T ss_pred             hhHHHHHHHHHHHHhcCcHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            998889899999999999999                  99999999999999999998888763   799999888887


Q ss_pred             HHHHHHHHHhhcccchh
Q psy12153        172 FVGFSLFYVWFIPESPL  188 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~  188 (236)
                      .++..+...+..||+++
T Consensus       169 ~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       169 GILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            75666666667788653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.73  E-value=6.4e-17  Score=139.17  Aligned_cols=151  Identities=17%  Similarity=0.115  Sum_probs=129.9

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.+++.+++.++..+++++.|.++||+|||+++..+.++.+++.+..++.++++.+++.|.+.|++
T Consensus        28 ~~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  104 (377)
T TIGR00890        28 PLGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAG  104 (377)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45678899   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc---chhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF---PNWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~---~~w~~~~~i~~~~  171 (236)
                      .+..++.....+.+++| ++|                  ++..+....+..+|..+++.+...+   .+||+.|++.++.
T Consensus       105 ~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890       105 VGIAYGIALNTAVKWFP-DKR------------------GLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             HHHHHHhHHHHHHHHcC-ccc------------------HHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            98888777888888887 568                  9999999999999987655444433   2799999998888


Q ss_pred             HHHHHHHHHhhcccch
Q psy12153        172 FVGFSLFYVWFIPESP  187 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~  187 (236)
                      .++..+...+++++.|
T Consensus       166 ~~~~~~~~~~~~~~~~  181 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPP  181 (377)
T ss_pred             HHHHHHHHHHheecCc
Confidence            8666666666666654

>PRK09952 shikimate transporter; Provisional

Probab=99.73  E-value=1e-16  Score=142.67  Aligned_cols=136  Identities=24%  Similarity=0.308  Sum_probs=115.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHH--------HHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12153         36 LYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFP--------VYLILRTMQGFFVQGLQNSTYTLLI  107 (236)
Q Consensus        36 ~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~  107 (236)
                      +.+++..+++++.|+++||+|||++++++.++.++++.++++.+++.        .+++.|+++|++.|+.++....++.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            45566789999999999999999999999999999999999999976        4788999999999999999999999


Q ss_pred             hhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHhHHHHHH
Q psy12153        108 ELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF-----------PNWRDAELVTSLPFVGFS  176 (236)
Q Consensus       108 e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~-----------~~w~~~~~i~~~~~~~~~  176 (236)
                      |++|+++|                  +...+..+.+..+|.++++.+...+           .+||.+|++.+++. ++.
T Consensus       152 e~~p~~~r------------------g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~-l~~  212 (438)
T PRK09952        152 ESAPKNKK------------------AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV-LIA  212 (438)
T ss_pred             HhCCCCCC------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH-HHH
Confidence            99999999                  9999999999999988887654432           28999999887765 445


Q ss_pred             HHHHhhcccchhHH
Q psy12153        177 LFYVWFIPESPLWK  190 (236)
Q Consensus       177 ~~~~~~~pet~~~~  190 (236)
                      ++.....||+|++.
T Consensus       213 ~~l~~~~~es~~~~  226 (438)
T PRK09952        213 LWVRNGMEESAEFE  226 (438)
T ss_pred             HHHHHhCCCChhHH
Confidence            55556689998764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.73  E-value=3e-18  Score=147.59  Aligned_cols=153  Identities=17%  Similarity=0.127  Sum_probs=135.4

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++++   +..+.+++.+++.++..++.++.|+++||+|||++++++.++..++.++....++++.+++.|++.|++
T Consensus        20 ~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   96 (379)
T TIGR00881        20 YLVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIF   96 (379)
T ss_pred             HHHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            45577888   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHH-HHHHhc---chhHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLS-LVSYWF---PNWRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~i~~~~---~~w~~~~~i~~~  170 (236)
                      .+...+....++.|++|+++|                  ++..++.+....+|..+++ .+...+   .+||+.|++.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (379)
T TIGR00881        97 QGMGWPPCGRTVTKWFSRSER------------------GTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGI  158 (379)
T ss_pred             ccccCCchHHHHHHhcCHhhh------------------eeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence            998889999999999999999                  9999999999999999998 454443   279999998888


Q ss_pred             HHHHHHHHHHhhcccchh
Q psy12153        171 PFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet~~  188 (236)
                      +.++..++..++.||+|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~  176 (379)
T TIGR00881       159 IAIIVSLICFLLLRDSPQ  176 (379)
T ss_pred             HHHHHHHHHheeeCCCcc
Confidence            775666777777888764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.73  E-value=1.9e-16  Score=139.12  Aligned_cols=153  Identities=20%  Similarity=0.193  Sum_probs=132.2

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++++   +..+.++..+.+.++..++.++.|.++||+|||++++++..+..++.......++++.+++.|+++|++
T Consensus        38 ~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  114 (406)
T PRK15402         38 AVVEDFNA---GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIG  114 (406)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhH
Confidence            34578888   899999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|.+|+++|                  .+..+.......+|..++|.++..+.   +||+.|++.++.
T Consensus       115 ~~~~~~~~~~~i~~~~~~~~~------------------~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~  176 (406)
T PRK15402        115 LCFIGAVGYAAIQESFEEADA------------------IKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAAL  176 (406)
T ss_pred             hhhHHHHHHHHHHHHhChhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence            888888888999999999888                  78788877777788888888877653   799999988888


Q ss_pred             HHHHHHHHHhhcccchh
Q psy12153        172 FVGFSLFYVWFIPESPL  188 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~  188 (236)
                      .++..+...+..||+++
T Consensus       177 ~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        177 AALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHhCCCCCc
Confidence            75555556667788754

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.73  E-value=8.8e-17  Score=143.80  Aligned_cols=149  Identities=19%  Similarity=0.334  Sum_probs=132.1

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhhh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY--NRSFPVYLILRTMQGFFVQ   96 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~   96 (236)
                      |+++   +..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.++...  ..+.+.+++.|+++|++.+
T Consensus        70 ~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~  146 (465)
T TIGR00894        70 NFKW---SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQG  146 (465)
T ss_pred             CCCC---CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcc
Confidence            6777   8999999999999999999999999999999999999999998888877654  3567788999999999999


Q ss_pred             hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHhHH
Q psy12153         97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF----PNWRDAELVTSLPF  172 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~----~~w~~~~~i~~~~~  172 (236)
                      ...+....++.|++|+++|                  ++..++...+..+|..+++.+.+.+    .+||+.|++.+++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~  208 (465)
T TIGR00894       147 SVSPATHKIIVKWAPPKER------------------SRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVG  208 (465)
T ss_pred             cchhhHHHHHHhcCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHH
Confidence            9999999999999999999                  9999999999999999999888766    28999999998888


Q ss_pred             HHHHHHHHhhcccchh
Q psy12153        173 VGFSLFYVWFIPESPL  188 (236)
Q Consensus       173 ~~~~~~~~~~~pet~~  188 (236)
                      ++..++.+++.+|+|+
T Consensus       209 ~~~~~~~~~~~~~~p~  224 (465)
T TIGR00894       209 CAWSLLWFVFPADDPS  224 (465)
T ss_pred             HHHHHHHHHHhcCCcc
Confidence            6666666667777775

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.72  E-value=1.5e-17  Score=143.17  Aligned_cols=155  Identities=15%  Similarity=0.191  Sum_probs=146.7

Q ss_pred             CCcceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy12153         13 NGEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG   92 (236)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g   92 (236)
                      ...++++.++   +..+.+.+.+.+.+.+.++.++.|.++||.+.|..+-.+.+++++.+++++++++.+.+.+...++|
T Consensus        52 ~p~l~e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng  128 (448)
T COG2271          52 MPALIEDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNG  128 (448)
T ss_pred             cHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4467788888   9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHH--Hhcc---hhHHHHHH
Q psy12153         93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVS--YWFP---NWRDAELV  167 (236)
Q Consensus        93 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~--~~~~---~w~~~~~i  167 (236)
                      ..+|...|.+...++.|+++++|                  |+..++.+.+.++|+.+.+.+.  .++.   +||..|++
T Consensus       129 ~fQg~Gwpp~~~~i~~Wfsr~eR------------------G~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~  190 (448)
T COG2271         129 WFQGMGWPPCARTITHWFSRKER------------------GTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYF  190 (448)
T ss_pred             HHhcCCCcHHHHHHHHHcCcccc------------------CceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHH
Confidence            99999999999999999999999                  9999999999999999999888  6654   89999999


Q ss_pred             HHhHHHHHHHHHHhhcccchh
Q psy12153        168 TSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       168 ~~~~~~~~~~~~~~~~pet~~  188 (236)
                      .+++.++++++.++..+++|+
T Consensus       191 pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         191 PGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             HHHHHHHHHHHHHHHhCCCcc
Confidence            999998999999999999986

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.72  E-value=6.9e-17  Score=144.63  Aligned_cols=152  Identities=20%  Similarity=0.226  Sum_probs=137.2

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|.   +..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.++++..++++.+++.|+++|++
T Consensus        27 ~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~  103 (485)
T TIGR00711        27 TIAGDLGS---SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFG  103 (485)
T ss_pred             HHHHhcCC---ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhh
Confidence            45567888   889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|++|+++|                  ++..++......+|..+++.+++.+.   +||+.|++.+++
T Consensus       104 ~~~~~~~~~~~i~~~~~~~~r------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~  165 (485)
T TIGR00711       104 GGPLIPLSFSTLLNIYPPEKR------------------GRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPI  165 (485)
T ss_pred             hhhHHHHHHHHHHHHCCHHHH------------------HHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHH
Confidence            999999999999999999999                  99999999999999999999988774   799999988887


Q ss_pred             HHHHHHHHHhhcccch
Q psy12153        172 FVGFSLFYVWFIPESP  187 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~  187 (236)
                      .++..++..+++||++
T Consensus       166 ~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       166 GIIVVVVAFFILPRDK  181 (485)
T ss_pred             HHHHHHHHHHHcCCcc
Confidence            7566666666777754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.72  E-value=3.1e-16  Score=136.04  Aligned_cols=152  Identities=17%  Similarity=0.306  Sum_probs=136.0

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.++..+.+.++..++.+++|+++||+|||+++.++.++..++.......++.+.+.+.|++.|++
T Consensus        16 ~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~   92 (377)
T PRK11102         16 VIAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLA   92 (377)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            44567888   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|++|+++|                  ++..++.+....+|..+++.+++.+.   +||+.|++.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  154 (377)
T PRK11102         93 AAAASVVINALMRDMFPKEEF------------------SRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA  154 (377)
T ss_pred             HHHHHHHHHHHHHHhcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            988888889999999999999                  99999999999999999998887663   799999888887


Q ss_pred             HHHHHHHHHhhcccch
Q psy12153        172 FVGFSLFYVWFIPESP  187 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~  187 (236)
                      .++..++..+++||++
T Consensus       155 ~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        155 AILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHhCCccC
Confidence            7555666667778864

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.71  E-value=3.3e-16  Score=136.93  Aligned_cols=152  Identities=14%  Similarity=0.109  Sum_probs=135.1

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.++++.   +..+.++..+.+.++..++.++.|+++||+|||+.++.+.++..++.......++.+.+++.|+++|++
T Consensus        28 ~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~  104 (392)
T PRK10473         28 RIAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIG  104 (392)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            44567888   899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|.+|+++|                  ++..+..+....+|..++|.++..+.   +|++.+++.++.
T Consensus       105 ~~~~~~~~~~~i~~~~~~~~r------------------~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~  166 (392)
T PRK10473        105 AGCCYVVAFAILRDTLDDRRR------------------AKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAM  166 (392)
T ss_pred             hhHHHHHHHHHHHHHcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHH
Confidence            888888889999999999999                  99999999999999999998887653   799999988887


Q ss_pred             HHHHHHHHHhhcccch
Q psy12153        172 FVGFSLFYVWFIPESP  187 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~  187 (236)
                      .++..++..+.+||++
T Consensus       167 ~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        167 GILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            7666666677788864

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.71  E-value=3.3e-16  Score=134.29  Aligned_cols=137  Identities=13%  Similarity=0.044  Sum_probs=122.2

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR-----SFPVYLILRTMQG   92 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g   92 (236)
                      .+++.   +..+.+++.+++.++..++.++.|+++||+|||++++.+.++..++..+....+     +.+.+++.|++.|
T Consensus        27 ~~~~~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  103 (365)
T TIGR00900        27 LAGTG---SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILA  103 (365)
T ss_pred             HHhhc---cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            45555   888999999999999999999999999999999999999998888888777766     8999999999999


Q ss_pred             HhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHH
Q psy12153         93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTS  169 (236)
Q Consensus        93 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~  169 (236)
                      ++.+...+...+++.|++|+++|                  ++..+..+....+|..+++.+++.+.   +||+.|++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~  165 (365)
T TIGR00900       104 IAQAFFTPAYQAMLPDLVPEEQL------------------TQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA  165 (365)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHH------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999999999999999                  99999999999999999999888763   7999998877


Q ss_pred             hHHHHH
Q psy12153        170 LPFVGF  175 (236)
Q Consensus       170 ~~~~~~  175 (236)
                      +..++.
T Consensus       166 ~~~~~~  171 (365)
T TIGR00900       166 VGFAIS  171 (365)
T ss_pred             HHHHHH
Confidence            766333

>KOG2533|consensus

Probab=99.71  E-value=1.2e-16  Score=143.17  Aligned_cols=161  Identities=22%  Similarity=0.295  Sum_probs=144.4

Q ss_pred             ccccccCCcce---eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHH
Q psy12153          7 DEIDCVNGEPV---LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPV   83 (236)
Q Consensus         7 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~   83 (236)
                      |....++..+.   +|.++   ...+.+.+.++++++++++.++++.+.||++-.+.+....+++.+..++....+|++.
T Consensus        60 d~~si~~a~l~g~~edl~~---~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~  136 (495)
T KOG2533|consen   60 DKSSIVNASLSGLKEDLKL---VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPG  136 (495)
T ss_pred             chhcchhHHHcCCccccch---hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            33344444333   67778   8999999999999999999999999999999888888888888888877888999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----
Q psy12153         84 YLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF-----  158 (236)
Q Consensus        84 ~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~-----  158 (236)
                      +++.|++.|+.++..+|....+++.++.+++|                  +..++++.....+|+++|++++..+     
T Consensus       137 ~ialr~llGl~es~~wP~~~~~lg~wy~~~e~------------------g~r~~~~~a~~~~g~i~ggliA~g~~~~~~  198 (495)
T KOG2533|consen  137 LIALRFLLGLFESGGWPGVVAILGNWYGKSER------------------GLRMGIWYASASLGNIFGGLIAYGVFKLNG  198 (495)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHhhcChhhh------------------hhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence            99999999999999999999999999999999                  9999999999999999999998883     


Q ss_pred             ----chhHHHHHHHHhHHHHHHHHHHhhcccchh
Q psy12153        159 ----PNWRDAELVTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       159 ----~~w~~~~~i~~~~~~~~~~~~~~~~pet~~  188 (236)
                          .+|||.|++.+++.++.++++++++|+.|.
T Consensus       199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             CCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence                389999999999998899999999999986

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.71  E-value=4.2e-16  Score=140.24  Aligned_cols=154  Identities=25%  Similarity=0.357  Sum_probs=133.9

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.++..+.+.++..++.++.|+++||+|||++++++.++.+++.+...+.++++.+++.|++.|++
T Consensus        45 ~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  121 (496)
T PRK03893         45 EVQGEFGL---TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMG  121 (496)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34567888   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|.+|+++|                  ++..+.......+|..+++.+...+.   +||+.|++..+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        122 MAGEYGSSATYVIESWPKHLR------------------NKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHHHHHHcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            998889899999999999999                  99999999999999999998887764   799998875444


Q ss_pred             HHHHHHHHHhhcccchhHH
Q psy12153        172 FVGFSLFYVWFIPESPLWK  190 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~~~  190 (236)
                      . +..++....+||++++.
T Consensus       184 ~-~~~~~~~~~~p~~~~~~  201 (496)
T PRK03893        184 I-IFALWLRKNLPEAEDWK  201 (496)
T ss_pred             H-HHHHHHHHhCCCchhhh
Confidence            3 44444555678876543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.71  E-value=3.8e-16  Score=137.04  Aligned_cols=136  Identities=12%  Similarity=0.029  Sum_probs=122.1

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+|+++   +..+.++..+.+.+++.+++++.|+++||+|||++++.+..+.+++....+++++++.+++.|+++|++
T Consensus        34 ~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig  110 (393)
T PRK09705         34 QLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVG  110 (393)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhH
Confidence            56678999   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF----PNWRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~----~~w~~~~~i~~~  170 (236)
                      .+...+....++.+++| ++|                  +++++....+..+|..+++.+++.+    .+||+.+.+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~-~~~------------------~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~  171 (393)
T PRK09705        111 IGIIQAVMPSVIKRRFQ-QRT------------------PLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWAL  171 (393)
T ss_pred             HHHHhhhhhHHHHHHcc-ccc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99888888889999987 678                  9999999888888888888777765    379988776665


Q ss_pred             HH
Q psy12153        171 PF  172 (236)
Q Consensus       171 ~~  172 (236)
                      ..
T Consensus       172 ~~  173 (393)
T PRK09705        172 PA  173 (393)
T ss_pred             HH
Confidence            54

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.70  E-value=4.5e-16  Score=136.19  Aligned_cols=153  Identities=19%  Similarity=0.195  Sum_probs=132.9

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.+++.+.+.++..++.+++|+++||+|||++++.+.++..++.+.....++++.+++.|++.|++
T Consensus        33 ~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  109 (394)
T PRK11652         33 DMARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLG  109 (394)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            44577888   999999999999999999999999999999999999999999999999888899999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....+..|.++.++|                  +...+....+..++..++|.+++.+.   +||+.|++.++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~  171 (394)
T PRK11652        110 TGVGGVMARTLPRDLYEGTQL------------------RHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLL  171 (394)
T ss_pred             hhHHHHHHHHHHHHhcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            887777777888899888888                  88889988999999999988887763   799999988877


Q ss_pred             HHHHHHHHHhhcccchh
Q psy12153        172 FVGFSLFYVWFIPESPL  188 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~  188 (236)
                      .++..++..++.||+++
T Consensus       172 ~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        172 GAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHhCCccCc
Confidence            75555666677888753

>KOG2532|consensus

Probab=99.70  E-value=3.9e-16  Score=139.31  Aligned_cols=152  Identities=22%  Similarity=0.303  Sum_probs=138.9

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR--SFPVYLILRTMQGFF   94 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~   94 (236)
                      ..+|++   +..+.+++.+.++.|+++++++.|+++||+|-|+++.++.++.++.+++...+.  +++.+++.|+++|++
T Consensus        65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG  141 (466)
T ss_pred             CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence            568889   999999999999999999999999999999999999999999999999998754  455778999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~  170 (236)
                      .|..+|....+.+.|.|+++|                  ++..++...+..+|.+++..+++++-    ||+..|++.++
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Er------------------s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~  203 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNER------------------STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGI  203 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHH------------------HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHH
Confidence            999999999999999999999                  99999999999999999988888763    89999999999


Q ss_pred             HHHHHHHHHHhhcccchhH
Q psy12153        171 PFVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet~~~  189 (236)
                      .+++..++.+++..|+|+.
T Consensus       204 ~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  204 VGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             HHHHHHHHHHHHhcCCccc
Confidence            9977777777888888763

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.70  E-value=6.8e-17  Score=144.81  Aligned_cols=153  Identities=14%  Similarity=0.108  Sum_probs=131.9

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY-----NRSFPVYLILRT   89 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   89 (236)
                      .+.+|+++   +..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.++..+..+.     +++++.+++.|+
T Consensus        54 ~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  130 (467)
T PRK09556         54 DMISTYGL---STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWA  130 (467)
T ss_pred             HHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            56688999   9999999999999999999999999999999999998888888777776664     578999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc------chhHH
Q psy12153         90 MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF------PNWRD  163 (236)
Q Consensus        90 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~------~~w~~  163 (236)
                      ++|++.+...+....++.|++|+++|                  ++..++...+..+|..+++.+..++      .+|+.
T Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~r------------------g~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~  192 (467)
T PRK09556        131 LSGFFQSTGGPCSYSTITRWTPRRKR------------------GRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIG  192 (467)
T ss_pred             HHHHHHhccchHHHHHHHHHcCccce------------------eeeEEeeecccchhhhHHHHHHHHHHHhhccCcchh
Confidence            99999998889999999999999999                  9999999999999999988776543      15888


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccchh
Q psy12153        164 AELVTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~pet~~  188 (236)
                      .|.+.+++.++..++.+++.++.|+
T Consensus       193 ~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        193 MFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChh
Confidence            8888888876666666677777764

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.69  E-value=3.4e-16  Score=135.03  Aligned_cols=151  Identities=18%  Similarity=0.101  Sum_probs=123.4

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR-SFPVYLILRTMQGFF   94 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~   94 (236)
                      +.+++|+   +..+.+++.+++.++..++.++.|+++||+|||+.++++.++..++.+...+.+ +++.+++.|+++|++
T Consensus        28 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~  104 (366)
T TIGR00886        28 IKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA  104 (366)
T ss_pred             HHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            5578899   999999999999999999999999999999999999999999999999999988 999999999999998


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc-------------chh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF-------------PNW  161 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~-------------~~w  161 (236)
                      .+ ..+....++.|++|+++|                  +...++......+|..+++.+++.+             .+|
T Consensus       105 ~~-~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w  165 (366)
T TIGR00886       105 GG-SFASCMPWISFFFPKKIQ------------------GTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW  165 (366)
T ss_pred             ch-hhHhHHHHHHHhcCHhhh------------------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            54 455677899999999999                  9999988866666666665554432             169


Q ss_pred             HHHH-HHHHhHHHHHHHHHHhhcccchh
Q psy12153        162 RDAE-LVTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       162 ~~~~-~i~~~~~~~~~~~~~~~~pet~~  188 (236)
                      |+.+ +..++...+..++..++.+|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       166 GWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence            9988 44455554555555666677653

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.68  E-value=9.6e-16  Score=135.23  Aligned_cols=153  Identities=12%  Similarity=0.175  Sum_probs=134.8

Q ss_pred             cceeeeeeeecCcch-hHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy12153         15 EPVLLWHLYHHECKW-NAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGF   93 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   93 (236)
                      .+.+|+|+   +..+ .+.+.+++..+++++.+++|+++||+|.|+++.++.+.+.+.+.++++.++...+.+.|++.|+
T Consensus        51 ~L~~elgl---T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGv  127 (511)
T TIGR00806        51 YLLTVLNF---TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSV  127 (511)
T ss_pred             HHHHHcCC---CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568899   8998 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHH--HHH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAEL--VTS  169 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~--i~~  169 (236)
                      +.|... ....++..++|+++|                  +++.++...+..+|.++++++++.+.  +||+.+-  .+.
T Consensus       128 aEA~~~-A~~syI~~WfP~kER------------------~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Is  188 (511)
T TIGR00806       128 TMAARI-AYSSYIFSLVPPSRY------------------QRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIIS  188 (511)
T ss_pred             HHHHHH-HHHHHHHHHCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            999988 889999999999999                  99999999999999999999888754  7876443  334


Q ss_pred             hHHHHHHHHHHhhcccchhH
Q psy12153        170 LPFVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       170 ~~~~~~~~~~~~~~pet~~~  189 (236)
                      ..+..++++..+++|..++.
T Consensus       189 l~s~~~a~~~a~~LP~~~~s  208 (511)
T TIGR00806       189 LVFMTFSVFLALFLKRPKRS  208 (511)
T ss_pred             HHHHHHHHHHHHhCCCCchh
Confidence            44446777888888965443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11043 putative transporter; Provisional

Probab=99.67  E-value=1.7e-15  Score=132.88  Aligned_cols=150  Identities=19%  Similarity=0.196  Sum_probs=126.7

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++++   +..+.++..+++.++..++++++|+++||+|||++++.+.++..++.+...+.++++.+++.|+++|++
T Consensus        31 ~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  107 (401)
T PRK11043         31 AIQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVG  107 (401)
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            34567888   999999999999999999999999999999999999999999999999889999999999999999998


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|.++++++                  ++..+.......+|..++|.+++.+.   +||+.|++.++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~  169 (401)
T PRK11043        108 VCSAAVIWQALVIDRYPAQKA------------------NRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI  169 (401)
T ss_pred             hHHHHHHHHHHHHHhcCcHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            877777778889999998888                  77777777777888888888877663   899999888877


Q ss_pred             HHHHHHHHHhhcccc
Q psy12153        172 FVGFSLFYVWFIPES  186 (236)
Q Consensus       172 ~~~~~~~~~~~~pet  186 (236)
                      .++..+ ..++++|+
T Consensus       170 ~~~~~~-~~~~~~~~  183 (401)
T PRK11043        170 TLLLIL-PTLRLKPS  183 (401)
T ss_pred             HHHHHH-HHHHcCCC
Confidence            744444 34445554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.67  E-value=2.2e-15  Score=135.59  Aligned_cols=151  Identities=14%  Similarity=0.085  Sum_probs=122.4

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++++   +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.++.++.+.+++.|++.|++
T Consensus        61 ~l~~~~gl---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  137 (476)
T PLN00028         61 IIRDNLNL---TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFS  137 (476)
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            44568888   899999999999999999999999999999999999999999999999899999999999999999998


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc------------chhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF------------PNWR  162 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~------------~~w~  162 (236)
                      .+... ....++.|++|+++|                  +.+.++......+|..+++.+.+.+            .+||
T Consensus       138 ~~~~~-~~~~~i~~~~~~~~r------------------g~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr  198 (476)
T PLN00028        138 LATFV-SCQYWMSTMFNGKIV------------------GTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWR  198 (476)
T ss_pred             HHhhH-HHHHHHHHhcChhhe------------------eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Confidence            77543 355678999999999                  9999988766666666655444322            2799


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        163 DAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                      +.|++.+++.++..++..++.++.|
T Consensus       199 ~~f~i~g~l~l~~~l~~~~~~~~~p  223 (476)
T PLN00028        199 IAFFVPGLLHIIMGILVLTLGQDLP  223 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            9999999888555555555544444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.67  E-value=1.5e-15  Score=135.70  Aligned_cols=152  Identities=16%  Similarity=0.138  Sum_probs=126.9

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHH
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN----RSFPVYLILRTMQ   91 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~   91 (236)
                      +.++ ++   +..+.++..+++.++..+++++.|+++||+|||++++++.++.+++.+..++.    .+.+.+++.|++.
T Consensus        55 l~~~-g~---s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~  130 (452)
T PRK11273         55 LVEQ-GF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC  130 (452)
T ss_pred             HHHc-CC---CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence            3445 77   89999999999999999999999999999999999999999999888887764    3677888999999


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHH-HHHHHHHh---cchhHHHHHH
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLV-MLSLVSYW---FPNWRDAELV  167 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~i~~~---~~~w~~~~~i  167 (236)
                      |++.+...+.....+.|++|+++|                  ++..++.+.+..+|.. .++.+...   ..+||+.|++
T Consensus       131 gi~~g~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i  192 (452)
T PRK11273        131 GWFQGMGWPPCGRTMVHWWSQKER------------------GGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM  192 (452)
T ss_pred             HHHHhccchHHHHHHHHhCChHHH------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence            999888888777888999999999                  9999999998888864 44443222   2389999999


Q ss_pred             HHhHHHHHHHHHHhhcccchhH
Q psy12153        168 TSLPFVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       168 ~~~~~~~~~~~~~~~~pet~~~  189 (236)
                      .+++.++..++..+++||+|+.
T Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        193 PAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             HHHHHHHHHHHHHHHccCCHhh
Confidence            8888766677777888998753

>PRK12382 putative transporter; Provisional

Probab=99.66  E-value=3.3e-15  Score=130.66  Aligned_cols=135  Identities=18%  Similarity=0.138  Sum_probs=113.5

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH---H-----hccHHHHHHHH
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV---Y-----NRSFPVYLILR   88 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~   88 (236)
                      .+|+|+   +..+.++..+.+.++..++++++|+++||+|||++++.+.+...++.+...   .     .++++.+++.|
T Consensus        43 ~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  119 (392)
T PRK12382         43 HHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGR  119 (392)
T ss_pred             HHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHH
Confidence            467888   999999999999999999999999999999999999998887766544322   1     24678889999


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHH
Q psy12153         89 TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAE  165 (236)
Q Consensus        89 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~  165 (236)
                      +++|++.+...+....++.|.+|+++|                  +++.+..+.+..+|..+++.+++.+.   +|+..+
T Consensus       120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r------------------~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  181 (392)
T PRK12382        120 LILGFGESQLLTGALTWGLGLVGPKHS------------------GKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALA  181 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccc------------------chhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence            999999988888888899999999999                  99999999999999999998887763   788766


Q ss_pred             HHHHhHH
Q psy12153        166 LVTSLPF  172 (236)
Q Consensus       166 ~i~~~~~  172 (236)
                      .+..+..
T Consensus       182 ~~~~~~~  188 (392)
T PRK12382        182 LTTMVLP  188 (392)
T ss_pred             HHHHHHH
Confidence            6554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.66  E-value=2.5e-15  Score=129.98  Aligned_cols=151  Identities=17%  Similarity=0.145  Sum_probs=121.1

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIML-ISFYGQGAISIAIVYNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   95 (236)
                      .+++|.   +..+.+++.+.+.+...+.+++.|.++||+|||+.++ .+..+..++..+...+++++.+++.|++.|.+.
T Consensus        25 ~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  101 (375)
T TIGR00899        25 SEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFA  101 (375)
T ss_pred             HcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhh
Confidence            457888   9999999999999999999999999999999888765 455555667777788899998888899888777


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhh--HHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGV--AWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSL  170 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~  170 (236)
                      +...+....+..|..+++.|                  +..  .+......++|..+++.+++.+.   +||+.|++.++
T Consensus       102 ~~~~p~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~  163 (375)
T TIGR00899       102 STANPQLFALAREHADRTGR------------------EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAAL  163 (375)
T ss_pred             hhhHHHHHHHHHHHhhhcch------------------hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence            77777777888888877666                  433  56667777888888888877663   79999999888


Q ss_pred             HHHHHHHHHHhhcccchh
Q psy12153        171 PFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet~~  188 (236)
                      +.++..++..+++||.|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       164 AFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHHHHHhCCCccc
Confidence            775566666677898764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.66  E-value=3.9e-15  Score=131.00  Aligned_cols=149  Identities=17%  Similarity=0.156  Sum_probs=131.1

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQ   96 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   96 (236)
                      ++++++   +..+.++..+...+...+..++.|.++||+|||+++.++.++..++.+.....++.+.+.+.|+++|++.+
T Consensus        38 ~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~  114 (400)
T PRK11646         38 VDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT  114 (400)
T ss_pred             HHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            456777   99999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHhHHHH
Q psy12153         97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTSLPFVG  174 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~~~~~~  174 (236)
                      ...+...+++.|.+|+++|                  ++..+.......+|..++|.+++.+.  +|++.|++.++..++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~------------------~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~  176 (400)
T PRK11646        115 LFDPPRTALVIKLIRPHQR------------------GRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVL  176 (400)
T ss_pred             HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            8888888999999999999                  99999999999999999998888764  789999888777645


Q ss_pred             HHHHHHhhcccc
Q psy12153        175 FSLFYVWFIPES  186 (236)
Q Consensus       175 ~~~~~~~~~pet  186 (236)
                      ..++..++.||.
T Consensus       177 ~~i~~~~~~~~~  188 (400)
T PRK11646        177 AAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHhCCcc
Confidence            555555566763

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.66  E-value=1.1e-15  Score=135.90  Aligned_cols=150  Identities=12%  Similarity=0.136  Sum_probs=128.1

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN----RSFPVYLILRTMQGFF   94 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~   94 (236)
                      ++|+   +..+.+++.+++.++..++.++.|+++||+|||+.++.+.++.+++.+.....    ++...+.+.|++.|++
T Consensus        55 ~~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~  131 (438)
T TIGR00712        55 EQGF---SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWF  131 (438)
T ss_pred             HcCC---CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence            4577   89999999999999999999999999999999999999988888888876653    4566778889999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHh-c---chhHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYW-F---PNWRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~-~---~~w~~~~~i~~~  170 (236)
                      .+..++.....+.|++|+++|                  ++..++.+....+|..+++.+... +   .+||..|++.++
T Consensus       132 ~g~~~~~~~~~i~~~~~~~~r------------------g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~  193 (438)
T TIGR00712       132 QGMGWPPCGRTMVHWWSQSER------------------GTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAI  193 (438)
T ss_pred             hhcchHHHHHHHHHhcCcccc------------------hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            888888888899999999999                  999999999999999888766543 2   379999999888


Q ss_pred             HHHHHHHHHHhhcccchhH
Q psy12153        171 PFVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet~~~  189 (236)
                      ..++..++..+++||+|+.
T Consensus       194 ~~~i~~~~~~~~~~~~~~~  212 (438)
T TIGR00712       194 CAIIVALFAFAMMRDTPQS  212 (438)
T ss_pred             HHHHHHHHHHHhccCCHHh
Confidence            8866667777788988753

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.66  E-value=2.2e-15  Score=132.35  Aligned_cols=147  Identities=16%  Similarity=0.146  Sum_probs=121.6

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQ   96 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   96 (236)
                      ..+++.   +..+.+++.+.+.+.+.++.+++|+++||+|||++++++.++..++.+.+....+.   ++.|+++|++.+
T Consensus        30 ~~~~~~---s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a  103 (393)
T PRK11195         30 LKELHY---PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA  103 (393)
T ss_pred             HHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            356666   78889999999999999999999999999999999999999988888776665553   678999999999


Q ss_pred             hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcchh--HHHHHHHHhHHHH
Q psy12153         97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNW--RDAELVTSLPFVG  174 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~w--~~~~~i~~~~~~~  174 (236)
                      ...|...+++.|++|+++|                  +++++..+....+|.++||.+++.+..|  +..+.+.+... +
T Consensus       104 ~~~pa~~a~i~~~~~~~~~------------------~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~-~  164 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKL------------------VKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIY-L  164 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            9999999999999999999                  9999999999999999999999888654  44444443333 3


Q ss_pred             HHHHHHhhcccchh
Q psy12153        175 FSLFYVWFIPESPL  188 (236)
Q Consensus       175 ~~~~~~~~~pet~~  188 (236)
                      ...+..+.+||+|+
T Consensus       165 ~~~~~~~~l~~~~~  178 (393)
T PRK11195        165 LAALFNLFIPRLGA  178 (393)
T ss_pred             HHHHHHhcCCCCcc
Confidence            34455567888754

>KOG2615|consensus

Probab=99.65  E-value=9.8e-16  Score=130.25  Aligned_cols=144  Identities=17%  Similarity=0.359  Sum_probs=117.5

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      +....|++.+.|++...+.++.+|.++||+|||++++++.++.++...+.+.+.|+..++..|++.|+..|.. .+.-++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence            4556799999999999999999999999999999999999999999999999999977777799999998665 557899


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcchh-----HHHH----HHHHhHHHHHH
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNW-----RDAE----LVTSLPFVGFS  176 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~w-----~~~~----~i~~~~~~~~~  176 (236)
                      ++|+.++|+|                  +..++.....+.+|.++||.+++++...     +.+|    ++..+....-.
T Consensus       145 isdV~sek~r------------------~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v  206 (451)
T KOG2615|consen  145 ISDVVSEKYR------------------PLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDV  206 (451)
T ss_pred             HHhhcChhhc------------------cceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHH
Confidence            9999999999                  9999999999999999999999988530     1112    22222221223


Q ss_pred             HHHHhhcccchh
Q psy12153        177 LFYVWFIPESPL  188 (236)
Q Consensus       177 ~~~~~~~pet~~  188 (236)
                      ....+++|||-.
T Consensus       207 ~~~~~~lpETL~  218 (451)
T KOG2615|consen  207 TFFPWFLPETLP  218 (451)
T ss_pred             HHHHHhCCcccc
Confidence            445667899854

>KOG0253|consensus

Probab=99.65  E-value=1.8e-15  Score=128.31  Aligned_cols=169  Identities=21%  Similarity=0.361  Sum_probs=147.3

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      ..|++   +..+.++++...+.+..+++..+|.++|++|||+.+.+.....++..++.+.++|+..+++.|.+.|++.|+
T Consensus       106 ~~w~~---s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg  182 (528)
T KOG0253|consen  106 EVWGP---SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG  182 (528)
T ss_pred             hhhch---hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC
Confidence            46787   888999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVG  174 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~  174 (236)
                       .|...++..|..|...|                  ....-.. ..|.+|.+....++....   ||||.+...+.+. .
T Consensus       183 -~pv~~~~yle~lp~~~r------------------~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl-~  241 (528)
T KOG0253|consen  183 -LPVDSAIYLEFLPSSHR------------------WLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPL-M  241 (528)
T ss_pred             -ccHhHHHHHHhccCcCC------------------CcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHH-H
Confidence             88889999999999988                  5555444 888899988887777664   8999888777555 6


Q ss_pred             HHHHHHhhcccchhHHHhcCCHhHHHHHHHHhhhhc
Q psy12153        175 FSLFYVWFIPESPLWKYTKNKIIDFEYLCDDESHRE  210 (236)
Q Consensus       175 ~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~  210 (236)
                      ......+++|||||+...+++.+++...+++.++.+
T Consensus       242 ~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmN  277 (528)
T KOG0253|consen  242 FAARFLVWVYESPRFYLAKGDDYKALETLHKIARMN  277 (528)
T ss_pred             HHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhc
Confidence            666778889999999999999999888887766543

>PRK10054 putative transporter; Provisional

Probab=99.65  E-value=3.4e-15  Score=131.22  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=128.0

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQ   96 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   96 (236)
                      .+++|+   +..+.++..+.+.++..+++++.|+++||+|||++++++.++..++.....+.++++.+++.+.+.|.+.+
T Consensus        35 ~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  111 (395)
T PRK10054         35 SRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS  111 (395)
T ss_pred             HHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            356788   99999999999999999999999999999999999999999998988888888998888888888887777


Q ss_pred             hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHhHHHH
Q psy12153         97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTSLPFVG  174 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~~~~~~  174 (236)
                      ...+....+..|..|+++|                  ++..++.....++|..++|.+++.+.  +|+..|++.++..++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~------------------~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i  173 (395)
T PRK10054        112 VFSTVLKAWFADNLSSTSK------------------TKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAF  173 (395)
T ss_pred             HHHHHHHHHHHHhcCHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            7777788899999998888                  99999999999999999999888764  799999888777644


Q ss_pred             HHHHHHhhcccc
Q psy12153        175 FSLFYVWFIPES  186 (236)
Q Consensus       175 ~~~~~~~~~pet  186 (236)
                      ..++..+++||+
T Consensus       174 ~~i~~~~~~~~~  185 (395)
T PRK10054        174 PLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHhcc
Confidence            445555556665

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.65  E-value=5.6e-15  Score=130.52  Aligned_cols=143  Identities=10%  Similarity=0.112  Sum_probs=124.0

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY---NRSFPVYLILRTMQ   91 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~   91 (236)
                      .+++++|+   +..+.+++.+.+.+++.+++++.|++.||+|||++++++.++.+++..+...   .++++.+++.|++.
T Consensus        28 ~~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~  104 (410)
T TIGR00885        28 QFQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFIL  104 (410)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            45678898   9999999999999999999999999999999999999999999998887543   46889999999999


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc-------------
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF-------------  158 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~-------------  158 (236)
                      |++.+...+....++.+..|+++|                  ++..+..+...++|..+++.+...+             
T Consensus       105 G~g~g~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~  166 (410)
T TIGR00885       105 TAGLGFLETAANPYILVMGPESTA------------------TRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL  166 (410)
T ss_pred             HhhHHHHHhhhhHHHHHHCCHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence            999999999999999999998888                  8889999999999999998877654             


Q ss_pred             ----------------chhHHHHHHHHhHHHHHHHH
Q psy12153        159 ----------------PNWRDAELVTSLPFVGFSLF  178 (236)
Q Consensus       159 ----------------~~w~~~~~i~~~~~~~~~~~  178 (236)
                                      .+||++|++.+++.++..++
T Consensus       167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            14999998888876444333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03699 putative transporter; Provisional

Probab=99.65  E-value=2.9e-15  Score=131.36  Aligned_cols=141  Identities=10%  Similarity=0.149  Sum_probs=124.2

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.+++.+.+.++..+++++.|+++||+|||++++++.++..++..+..+.++++.+++.|++.|++
T Consensus        32 ~i~~~~~~---s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~  108 (394)
T PRK03699         32 PIAEYFNL---PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVV  108 (394)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHh
Confidence            45678889   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF----PNWRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~----~~w~~~~~i~~~  170 (236)
                      .+...+....++.|.+|+++|                  +...+..+....+|..++|.+.+.+    .+||+.|.+.++
T Consensus       109 ~g~~~~~~~~~i~~~~~~~~r------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~  170 (394)
T PRK03699        109 SGITMSIGTFLITHVYEGKQR------------------GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGL  170 (394)
T ss_pred             hHhhccchhHHhhhhcccchH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            888888888899999998888                  8888888888888888888776654    279999998887


Q ss_pred             HHHHHH
Q psy12153        171 PFVGFS  176 (236)
Q Consensus       171 ~~~~~~  176 (236)
                      +.++..
T Consensus       171 ~~~~~~  176 (394)
T PRK03699        171 VYVAIF  176 (394)
T ss_pred             HHHHHH
Confidence            764433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.64  E-value=5.6e-15  Score=131.20  Aligned_cols=152  Identities=20%  Similarity=0.218  Sum_probs=113.8

Q ss_pred             cceeeeeeeecCcchhHH-HHHHH-----HHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHH------
Q psy12153         15 EPVLLWHLYHHECKWNAA-VVTLY-----FLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFP------   82 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~------   82 (236)
                      .+.+|++.   +..+.+. ..+..     .++..+++++.|+++||+|||+.++.+.++..++..+++++++++      
T Consensus        40 ~i~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~  116 (434)
T PRK15075         40 AIAKTFFP---AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAA  116 (434)
T ss_pred             HHHHHhCC---CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            45567777   5554432 22222     233357889999999999999999999999999999999998876      


Q ss_pred             --HHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc--
Q psy12153         83 --VYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF--  158 (236)
Q Consensus        83 --~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~--  158 (236)
                        .+++.|+++|++.+...+....++.|++|+++|                  ++..++......+|..+++.++..+  
T Consensus       117 ~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~r------------------g~~~~~~~~~~~~g~~~g~~~g~~l~~  178 (434)
T PRK15075        117 PLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRK------------------GFYTSWQSASQQVAVVFAALLGYLLNQ  178 (434)
T ss_pred             HHHHHHHHHHhhccccccHHHHHHHHHhhCCcccc------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              368899999999998888888999999999999                  9999988887777776666655543  


Q ss_pred             ---------chhHHHHHHHHhHHHHHHHHHHhhcccchh
Q psy12153        159 ---------PNWRDAELVTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       159 ---------~~w~~~~~i~~~~~~~~~~~~~~~~pet~~  188 (236)
                               .+||++|++..+.. +...+.....||+++
T Consensus       179 ~~~~~~~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~  216 (434)
T PRK15075        179 WLSPAQMAEWGWRIPFLIGCLIV-PFIFLIRRSLEETEE  216 (434)
T ss_pred             hCCHHHHhccchHHHHHHHHHHH-HHHHHHHHhcCCCHH
Confidence                     28999998754433 333333344566543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.64  E-value=4.3e-15  Score=130.09  Aligned_cols=135  Identities=15%  Similarity=0.071  Sum_probs=114.7

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh---c-----cHHHHHHHH
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN---R-----SFPVYLILR   88 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~   88 (236)
                      .+++++   +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.......   +     ++..+++.|
T Consensus        43 ~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  119 (399)
T PRK05122         43 HDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGR  119 (399)
T ss_pred             HHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH
Confidence            457788   89999999999999999999999999999999999999998887766654432   2     456788999


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHH
Q psy12153         89 TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAE  165 (236)
Q Consensus        89 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~  165 (236)
                      +++|++.+...+....++.|..|+++|                  ++..+..+....+|..+++.++..+.   +|+..+
T Consensus       120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~  181 (399)
T PRK05122        120 LLLGIGESLAGTGSILWGIGRVGALHT------------------GRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLG  181 (399)
T ss_pred             HHHHhhHHhhcchHHHHHHhhcChhhh------------------ccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence            999999998888888899999999999                  99999988888888888888877663   788887


Q ss_pred             HHHHhHH
Q psy12153        166 LVTSLPF  172 (236)
Q Consensus       166 ~i~~~~~  172 (236)
                      ++..+..
T Consensus       182 ~~~~~~~  188 (399)
T PRK05122        182 LLIMLLA  188 (399)
T ss_pred             HHHHHHH
Confidence            7666554

>PRK10504 putative transporter; Provisional

Probab=99.64  E-value=6.4e-15  Score=131.87  Aligned_cols=151  Identities=15%  Similarity=0.092  Sum_probs=131.6

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.+++.+.+.++..++.+++|+++||+|||++++.+.++..++.+...+.++.+.+++.|+++|++
T Consensus        35 ~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~  111 (471)
T PRK10504         35 SMAQSLGE---SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVG  111 (471)
T ss_pred             HHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence            44567888   889999999999999999999999999999999999999988888888888889999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....++.|.+|+++|                  +...+.......+|..++|.+++.+.   +||+.|.+....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~  173 (471)
T PRK10504        112 GAMMVPVGRLTVMKIVPREQY------------------MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPV  173 (471)
T ss_pred             hHHHHHHHHHHHHHHcCHHHH------------------HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHH
Confidence            999999899999999999999                  99999999999999999999887763   799999988777


Q ss_pred             HHHHHHHHHhhcccc
Q psy12153        172 FVGFSLFYVWFIPES  186 (236)
Q Consensus       172 ~~~~~~~~~~~~pet  186 (236)
                      ..+..+......|+.
T Consensus       174 ~~l~~~~~~~~~~~~  188 (471)
T PRK10504        174 GIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHhCCCc
Confidence            645555555555654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.63  E-value=1.2e-14  Score=131.09  Aligned_cols=162  Identities=14%  Similarity=0.178  Sum_probs=115.9

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHhhhhhhHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIA---IVYNRSFPVYLILRTMQGFFVQGLQNST  102 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~  102 (236)
                      +..+.++......++..++.+..|+++||+|||++++++.++..+....   ....++...+++++++.|++.+...+..
T Consensus       284 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~  363 (490)
T PRK10642        284 SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVM  363 (490)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666777778888899999999999999999999988877654433322   2223456677778888888776666777


Q ss_pred             HHHHHhhcCccccccccchhhhhhccccccchhhHHH-HHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHHHHHHH
Q psy12153        103 YTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV-TEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPFVGFSL  177 (236)
Q Consensus       103 ~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~~~~~~  177 (236)
                      ..++.|.+|++.|                  +...+. .+++ .+++.++|.+.+++.    +|+.++++..++. ++.+
T Consensus       364 ~~~~~~~~p~~~R------------------g~~~g~~~~~~-~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~-~i~~  423 (490)
T PRK10642        364 ASTLPAMFPTHIR------------------YSALAAAFNIS-VLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA-VIGL  423 (490)
T ss_pred             HHHHHHHCCCccc------------------hHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH-HHHH
Confidence            7888899999999                  887776 4544 455566776666542    4666666655555 4455


Q ss_pred             HHHhhcccchhHHHhc-----CCHhHHHHHHHHhh
Q psy12153        178 FYVWFIPESPLWKYTK-----NKIIDFEYLCDDES  207 (236)
Q Consensus       178 ~~~~~~pet~~~~~~~-----~~~~~~~~~~~~~~  207 (236)
                      +..+++||||++..++     ++.+|+.+.+.+.+
T Consensus       424 ~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        424 ITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            5566779999987654     77777777766554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.63  E-value=2e-14  Score=128.00  Aligned_cols=147  Identities=12%  Similarity=0.048  Sum_probs=123.5

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN-----RSFPVYLILRTMQGF   93 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~   93 (236)
                      ++++   +..+.+++.+++.+++.++.++.|++.||+|+|+++.++.++..+.++..++.     ++++.+++.|++.|+
T Consensus        64 ~~~l---s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gi  140 (462)
T PRK15034         64 GFNF---TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGF  140 (462)
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHH
Confidence            7899   99999999999999999999999999999999999999999999999988876     799999999999999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--------------
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--------------  159 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--------------  159 (236)
                      + +..++.....+++++|+++|                  |++.++.....++|..+++.+.+.+.              
T Consensus       141 g-g~~f~~~~~~vs~wfp~~~r------------------G~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~  201 (462)
T PRK15034        141 A-GANFASSMGNISFFFPKAKQ------------------GSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVP  201 (462)
T ss_pred             H-HHhHHHHHHHHHHHCCHhHh------------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            8 67888899999999999999                  99999997777777766655544321              


Q ss_pred             -------hhHHHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        160 -------NWRDAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       160 -------~w~~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                             +|+.+.++..++.++..++.+++.++.|
T Consensus       202 ~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~  236 (462)
T PRK15034        202 QADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA  236 (462)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                   2677777777777566666666666543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.62  E-value=1.1e-14  Score=125.93  Aligned_cols=132  Identities=26%  Similarity=0.358  Sum_probs=109.5

Q ss_pred             HHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHH--------HHHHHHHHHHHhhhhhhHHHHHHHHhhc
Q psy12153         39 LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFP--------VYLILRTMQGFFVQGLQNSTYTLLIELF  110 (236)
Q Consensus        39 l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~e~~  110 (236)
                      ++..+++++.|+++||+|||++++.+.++..++..+.++.++++        .+++.|+++|++.+...+....++.|++
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  125 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA  125 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC
Confidence            34457899999999999999999999999999999999888765        4778899999999888888899999999


Q ss_pred             CccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHhHHHHHHHHH
Q psy12153        111 PTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF-----------PNWRDAELVTSLPFVGFSLFY  179 (236)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~-----------~~w~~~~~i~~~~~~~~~~~~  179 (236)
                      ++++|                  +...+..+.+..+|.++++.+...+           .+||+.|++.++.. +...+.
T Consensus       126 ~~~~r------------------~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~  186 (394)
T TIGR00883       126 PPGKR------------------GFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLV-LIGLYL  186 (394)
T ss_pred             Ccccc------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHH-HHHHHH
Confidence            99999                  9999999999999999988776543           26999988776665 444555


Q ss_pred             HhhcccchhH
Q psy12153        180 VWFIPESPLW  189 (236)
Q Consensus       180 ~~~~pet~~~  189 (236)
                      ....||++++
T Consensus       187 ~~~~~~~~~~  196 (394)
T TIGR00883       187 RRNLEETPVF  196 (394)
T ss_pred             HHhcCCChhH
Confidence            5567887654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PTZ00207 hypothetical protein; Provisional

Probab=99.61  E-value=2.7e-14  Score=130.38  Aligned_cols=149  Identities=13%  Similarity=0.074  Sum_probs=123.6

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN------RSFPVYLILR   88 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~   88 (236)
                      .+.+++++   +..+.+++.++.. ...++.++.|+++||+|||++++++.++..++.++++++      ++.+.+++.|
T Consensus        52 ~L~~~lgl---s~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r  127 (591)
T PTZ00207         52 AMQARYNL---TQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYN  127 (591)
T ss_pred             HHHHHhCc---CHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence            55678899   8999998887743 445677889999999999999999999999999999886      6889999999


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHH-HHHHHHhcc-hhHHHHH
Q psy12153         89 TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVM-LSLVSYWFP-NWRDAEL  166 (236)
Q Consensus        89 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~i~~~~~-~w~~~~~  166 (236)
                      ++.|++.+...+.....+.+++| ++|                  |.+.++......+|..+ +++...++. +|+..|+
T Consensus       128 ~l~G~G~~~~~~~~~~~i~~~Fp-~~R------------------G~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl  188 (591)
T PTZ00207        128 GLMTLGCMLFDLGAVVTVLSVFP-SNR------------------GAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFF  188 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCh-hhh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999988888888888999996 678                  99999999999999975 444444443 7888888


Q ss_pred             HHHhHHHHHHHHHHhhcccc
Q psy12153        167 VTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       167 i~~~~~~~~~~~~~~~~pet  186 (236)
                      +.++.++++.++..+++++.
T Consensus       189 ~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        189 FLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHHHHHhheeCC
Confidence            88888877777776666543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.61  E-value=1.1e-14  Score=107.88  Aligned_cols=134  Identities=21%  Similarity=0.329  Sum_probs=115.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccc
Q psy12153         35 TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRW  114 (236)
Q Consensus        35 ~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~  114 (236)
                      +.+.++..++.++.|++.||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+....++.|..|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            45677888999999999999999999999999888888888888899999999999999998888889999999999999


Q ss_pred             cccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153        115 RIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       115 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                      |                  ++..+..+....+|..+++.+.+.+.   +|++.+++.++..++..+...++.||+
T Consensus        85 ~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        85 R------------------GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             h------------------hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            9                  99999999999999999999888774   688888888877755556666666663

>PRK10133 L-fucose transporter; Provisional

Probab=99.61  E-value=2.1e-14  Score=127.88  Aligned_cols=121  Identities=10%  Similarity=0.121  Sum_probs=106.8

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI---VYNRSFPVYLILRTMQ   91 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~   91 (236)
                      .+.+++++   +..+.++..+.+.+++.+++++.|+++||+|||+++.++..+.+++++++   ...++++.+++.|+++
T Consensus        51 ~i~~~~~~---s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~  127 (438)
T PRK10133         51 QFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFII  127 (438)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34568888   99999999999999999999999999999999999999999999998775   4578999999999999


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSY  156 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~  156 (236)
                      |++.+...+....++.|..++++|                  ....+..+..+.+|..+++.++.
T Consensus       128 G~g~g~~~~~~~~~v~~~~~~~~~------------------~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        128 AAGLGCLETAANPFVTVLGPESSG------------------HFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHhhHHHHHHHhCChhhH------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998776666                  66788888888888888887754

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.61  E-value=2.8e-14  Score=124.92  Aligned_cols=139  Identities=21%  Similarity=0.215  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy12153         30 NAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIEL  109 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  109 (236)
                      .+++.+++.++..++.++.|+++||+|||++++.+.++..++..+....++++.+++.|++.|++.+ ..+....++.+.
T Consensus        56 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~  134 (408)
T PRK09874         56 SGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQ  134 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHh
Confidence            4888999999999999999999999999999999999999998888888999999999999998754 456677888899


Q ss_pred             cCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153        110 FPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                      .|+++|                  ++..+.......+|..+++.+.+.+.   +|++.|++.++..++..+...+++||.
T Consensus       135 ~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        135 VPRNKS------------------GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             cCHhhh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999989                  99999999999999999998888763   799999988887755566666677775


Q ss_pred             h
Q psy12153        187 P  187 (236)
Q Consensus       187 ~  187 (236)
                      +
T Consensus       197 ~  197 (408)
T PRK09874        197 F  197 (408)
T ss_pred             c
Confidence            4

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.59  E-value=1.8e-14  Score=128.92  Aligned_cols=149  Identities=15%  Similarity=0.119  Sum_probs=124.4

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLI-LRTMQGF   93 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~   93 (236)
                      .+.+++|+   +..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++++.++++++.+.+++ .|++.|+
T Consensus        44 ~i~~~~g~---s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~  120 (455)
T TIGR00892        44 ELQQIFQA---TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGL  120 (455)
T ss_pred             HHHHHhCc---chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            45578888   8999999999999999999999999999999999999999999999999888888888765 4689999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSL  170 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~  170 (236)
                      +.+...+....++.++++ ++|                  +++.++.+.+..+|..++|.+.+.+.   +||+.|++.++
T Consensus       121 ~~~~~~~~~~~~~~~~~~-~~r------------------~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~  181 (455)
T TIGR00892       121 GLAFNFQPSLTMLGKYFY-RRR------------------PLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGG  181 (455)
T ss_pred             cchhhhhHHHHHHHHHHH-hhH------------------HHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            988766667788889885 678                  99999999999999999988877653   79999999988


Q ss_pred             HHHHHHHHHHhhccc
Q psy12153        171 PFVGFSLFYVWFIPE  185 (236)
Q Consensus       171 ~~~~~~~~~~~~~pe  185 (236)
                      +.++..+..++..|+
T Consensus       182 ~~~~~~v~~~~~~~~  196 (455)
T TIGR00892       182 LLLHCCVCGALMRPV  196 (455)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            774444444444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.59  E-value=3.3e-14  Score=120.84  Aligned_cols=139  Identities=24%  Similarity=0.312  Sum_probs=125.6

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQ   96 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   96 (236)
                      .++++.   +..+.++..+...++..++.++.|+++||+|||+.+.++.++..++.+.....++.+.+.+.|++.|++.+
T Consensus        26 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  102 (352)
T cd06174          26 AEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGG  102 (352)
T ss_pred             HHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccc
Confidence            345566   88999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHH
Q psy12153         97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFV  173 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~  173 (236)
                      ...+....++.|++|+++|                  ++..+..+....+|..+++.++..+.   +|++.+++.++..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (352)
T cd06174         103 ALYPAAAALIAEWFPPKER------------------GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL  164 (352)
T ss_pred             cccHhHHHHHHHhCCccch------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999                  99999999999999999999988774   58988888777764


Q ss_pred             HHH
Q psy12153        174 GFS  176 (236)
Q Consensus       174 ~~~  176 (236)
                      +..
T Consensus       165 ~~~  167 (352)
T cd06174         165 LLA  167 (352)
T ss_pred             HHH
Confidence            433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.57  E-value=2.8e-14  Score=128.75  Aligned_cols=147  Identities=8%  Similarity=-0.043  Sum_probs=120.2

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADR-FGRRVIMLISFYGQGAISIAIVYNRSFPV-YLILRTMQGFFV   95 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~   95 (236)
                      +++|+   +..+.+++.+.+.....+..+++|+++|| +|||++++++.++..++.+.+++..+... +.+.|.++|++.
T Consensus        43 ~~lg~---~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~  119 (489)
T PRK10207         43 KQLGF---SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGN  119 (489)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcc
Confidence            46777   88888999999998888889999999999 99999999999999999999988776444 457899999999


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      |...+...+++.|.+|+++|.                |+...+..+.+.++|..++|.+++++.   +||+.|++.++..
T Consensus       120 g~~~~~~~~li~~~~p~~~~~----------------~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~  183 (489)
T PRK10207        120 GLFKANPASLLSKCYPPKDPR----------------LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL  183 (489)
T ss_pred             ccccCCHHHHHHHhcCCCchh----------------hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            999888899999999877420                166788899999999999998888875   8999998865433


Q ss_pred             HHHHHHHHhhcc
Q psy12153        173 VGFSLFYVWFIP  184 (236)
Q Consensus       173 ~~~~~~~~~~~p  184 (236)
                       +..++.+++.+
T Consensus       184 -~~~~~~~~~~~  194 (489)
T PRK10207        184 -IIALLVYFACR  194 (489)
T ss_pred             -HHHHHHHHHcc
Confidence             44444444444

>KOG0252|consensus

Probab=99.57  E-value=1.1e-14  Score=126.52  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=122.6

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHhhhhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR-------SFPVYLILRTMQGFFVQGL   98 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~g~~~~~~   98 (236)
                      +....+.+..+..+|.++|++++|++.||+|||+++...+++..+++++++.+.       -..++...|++.|+|.|+-
T Consensus        82 ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGD  161 (538)
T KOG0252|consen   82 PSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGD  161 (538)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCC
Confidence            556678889999999999999999999999999999999999999998666532       1356778899999999999


Q ss_pred             hHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc------------------h
Q psy12153         99 QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP------------------N  160 (236)
Q Consensus        99 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~------------------~  160 (236)
                      +|...++++|...++.|                  |...+........|.+.|..++..+.                  -
T Consensus       162 YPlSAtI~SE~an~~~R------------------Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~v  223 (538)
T KOG0252|consen  162 YPLSATIMSESANKKTR------------------GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGV  223 (538)
T ss_pred             CcchHHHhhhhhhhccc------------------cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHH
Confidence            99999999999999999                  77777776666666666666555441                  2


Q ss_pred             hHHHHHHHHhHHHHHHHHHHhhcccchhHHHhc
Q psy12153        161 WRDAELVTSLPFVGFSLFYVWFIPESPLWKYTK  193 (236)
Q Consensus       161 w~~~~~i~~~~~~~~~~~~~~~~pet~~~~~~~  193 (236)
                      ||..+.+..++. +..+...+.+|||+++....
T Consensus       224 WRl~~glg~vpa-~~~ly~Rl~M~Et~~Y~al~  255 (538)
T KOG0252|consen  224 WRIIFGLGAVPA-LLVLYFRLKMPETARYTALV  255 (538)
T ss_pred             HHHHHHHHHHHH-HHHHHhhhcCCcchhHHHHh
Confidence            998888777777 77777788899999987443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.56  E-value=1.2e-13  Score=120.48  Aligned_cols=124  Identities=18%  Similarity=0.095  Sum_probs=113.4

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..+++...+..++++.+++.|+++|++
T Consensus        31 ~~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  107 (381)
T PRK03633         31 LWLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIG  107 (381)
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34467788   899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      .+...+.....+.+..++++|                  ++..+.......+|..+++.+.+.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633        108 CAMIWVVVESALMCSGTSRNR------------------GRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            988888777778888888888                  99999999999999999999988875

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.56  E-value=1.2e-13  Score=129.40  Aligned_cols=139  Identities=19%  Similarity=0.145  Sum_probs=117.1

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy12153         30 NAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIEL  109 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  109 (236)
                      ..+...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++.+++.|++.++.++...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556677789999999999999999999999999999999999888888888888888888888888888889999999


Q ss_pred             cCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        110 FPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                      +|++.|                  ++.+++......+|.+++|.+++.+.  +...+|++.+++. +++.++.+++|||.
T Consensus       677 ~Pt~~R------------------gta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~l-ll~~ll~~~LPET~  737 (742)
T TIGR01299       677 YPSDKR------------------ATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAAL-ACGGLLALKLPDTR  737 (742)
T ss_pred             cCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHhCCCCc
Confidence            999999                  99999999999999999999987653  3345677776666 44555555679983

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00897 2A0118 polyol permease family

Probab=99.55  E-value=2.7e-13  Score=119.28  Aligned_cols=150  Identities=13%  Similarity=0.070  Sum_probs=115.1

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH---H-hccHHHHHHHHHHH
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV---Y-NRSFPVYLILRTMQ   91 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~   91 (236)
                      ..+|+++   +..+.++..+.+.++..++.++.|+++||+|||+++..+..+..++.....   . .++.+.+++.|.+.
T Consensus        39 ~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~  115 (402)
T TIGR00897        39 FLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIR  115 (402)
T ss_pred             HHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence            3467777   999999999999999999999999999999999999999988888766543   2 35778888899999


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHH-HHHHHHHHhcc---hhHHHHHH
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGL-VMLSLVSYWFP---NWRDAELV  167 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~i~~~~~---~w~~~~~i  167 (236)
                      |++.+...+.....+.+.+|+++|                  ++.++..+...++|. .+++.++..+.   +|+..++.
T Consensus       116 G~g~~~~~~~~~~~~~~~~~~~~~------------------g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       116 GLGYPLFAYSFLVWVVYNTKQDNL------------------SSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             HcchHHHHhHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            998877777777888899999999                  999999999999996 57888776553   55444333


Q ss_pred             HHhHHHHHHHHHHhhcccc
Q psy12153        168 TSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       168 ~~~~~~~~~~~~~~~~pet  186 (236)
                      ......+..++..++.++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~  196 (402)
T TIGR00897       178 ALAFVLTGGVIALFSNKDI  196 (402)
T ss_pred             HHHHHHHHHHHHHhccCCC
Confidence            3322222233333444443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.55  E-value=4.9e-14  Score=124.35  Aligned_cols=149  Identities=17%  Similarity=0.109  Sum_probs=122.4

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY-----NRSFPVYLILRTMQG   92 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g   92 (236)
                      ++++.   +..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++......     .++++.+.+.|++.|
T Consensus        45 ~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  121 (417)
T PRK10489         45 QMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDG  121 (417)
T ss_pred             HHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            45555   8889999999999999999999999999999999998887777766654432     457788888999999


Q ss_pred             HhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHH
Q psy12153         93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTS  169 (236)
Q Consensus        93 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~  169 (236)
                      ++.+...+....++.|..|+++|                  ++..+.......+|..+++.+++.+.   +|++.+++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~  183 (417)
T PRK10489        122 FFGSLGVTALLAATPALVGRENL------------------MQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA  183 (417)
T ss_pred             HHHHHHHHHHhhhhhhccCHHHH------------------HHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence            98887778788899999999988                  99999999999999999999888763   7888888777


Q ss_pred             hHHHHHHHHHHhhcccchh
Q psy12153        170 LPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       170 ~~~~~~~~~~~~~~pet~~  188 (236)
                      +.. +...+..+.+||+++
T Consensus       184 ~~~-~~~~~~~~~l~~~~~  201 (417)
T PRK10489        184 AGT-FITLLPLLRLPALPP  201 (417)
T ss_pred             HHH-HHHHHHHHhCCCCCC
Confidence            666 444555566777643

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.55  E-value=9.7e-14  Score=124.88  Aligned_cols=141  Identities=9%  Similarity=-0.008  Sum_probs=123.0

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADR-FGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL   98 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   98 (236)
                      +|+   +..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.++.++.++.+.+.+++.+.|++.|..
T Consensus        43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~  119 (475)
T TIGR00924        43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF  119 (475)
T ss_pred             CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence            677   89999999999999999999999999999 89999999999999999999998888888888999999999888


Q ss_pred             hHHHHHHHHhhcCccc---cccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         99 QNSTYTLLIELFPTRW---RIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        99 ~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      .+...++++|++|+++   |                  +...++.+...++|..+++.+.+++.   +|++.|.+.++..
T Consensus       120 ~~~~~~~~a~~~~~~~~~~r------------------~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~  181 (475)
T TIGR00924       120 KANPSSMVGKLYERGDMPRR------------------DGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGM  181 (475)
T ss_pred             cCCHHHHHHHhcCCCCcccc------------------cceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            8888999999998764   5                  77889999999999999999988874   7999998877654


Q ss_pred             HHHHHHHHhh
Q psy12153        173 VGFSLFYVWF  182 (236)
Q Consensus       173 ~~~~~~~~~~  182 (236)
                       +..++.+++
T Consensus       182 -~~~~l~~~~  190 (475)
T TIGR00924       182 -VIGLLTFFA  190 (475)
T ss_pred             -HHHHHHHHH
Confidence             334444444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764|consensus

Probab=99.54  E-value=3.2e-14  Score=121.78  Aligned_cols=145  Identities=17%  Similarity=0.149  Sum_probs=132.3

Q ss_pred             cCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12153         25 HECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        25 ~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      .+..+.|++.....+...+.+++.|.+.||+|+|..+++|......++++.++.++++.+++.|.++|++.+.......+
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHh
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVW  181 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~  181 (236)
                      +++|.+|++.++                 +.++|....+.++|.+++|.+++.+.   |.+.+|++.+++.++...+.++
T Consensus       183 mlAd~f~~d~er-----------------~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  183 MLADVFPEDNER-----------------GSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHcccchhh-----------------hHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh
Confidence            999999977632                 99999999999999999999999884   8899999999999666666666


Q ss_pred             hcccc
Q psy12153        182 FIPES  186 (236)
Q Consensus       182 ~~pet  186 (236)
                      .++.+
T Consensus       246 vi~p~  250 (464)
T KOG3764|consen  246 VIEPT  250 (464)
T ss_pred             eeCcc
Confidence            66654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.53  E-value=1.1e-14  Score=135.22  Aligned_cols=151  Identities=13%  Similarity=0.107  Sum_probs=127.4

Q ss_pred             CcceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc--------------
Q psy12153         14 GEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR--------------   79 (236)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--------------   79 (236)
                      .++.++|++   +..+.|++.+.+.+++.++.++.+++.||+|||+.+.++.++.++++++.++.+              
T Consensus        57 ~~iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~  133 (633)
T TIGR00805        57 TTIERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSS  133 (633)
T ss_pred             hhhhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccc
Confidence            356678999   999999999999999999999999999999999999999999999999887542              


Q ss_pred             -------------------------------------cHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchh
Q psy12153         80 -------------------------------------SFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYT  122 (236)
Q Consensus        80 -------------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~  122 (236)
                                                           .+..++++|+++|++.+..++...+++.|++|+++|       
T Consensus       134 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~-------  206 (633)
T TIGR00805       134 TGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNS-------  206 (633)
T ss_pred             cccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcccc-------
Confidence                                                 244567899999999999999999999999999999       


Q ss_pred             hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-------------------------hhHHHHHHHHhHHHHHHH
Q psy12153        123 LLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-------------------------NWRDAELVTSLPFVGFSL  177 (236)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-------------------------~w~~~~~i~~~~~~~~~~  177 (236)
                                 +...++......+|..+++.+++.+.                         .|+..|++.+++.++.++
T Consensus       207 -----------~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       207 -----------PLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             -----------HHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence                       99999999999999999988876542                         266678887777744444


Q ss_pred             HHHhhcccc
Q psy12153        178 FYVWFIPES  186 (236)
Q Consensus       178 ~~~~~~pet  186 (236)
                       .++++|++
T Consensus       276 -~l~~~p~~  283 (633)
T TIGR00805       276 -PFFFFPKA  283 (633)
T ss_pred             -HHHhCccc
Confidence             44556654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00896 CynX cyanate transporter

Probab=99.53  E-value=3e-13  Score=116.70  Aligned_cols=135  Identities=13%  Similarity=0.052  Sum_probs=115.2

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+.+++|+   +..+.++..+++.++..++.++.|+++||+|||+++.++.++..++.... ..++.+.+++.|++.|++
T Consensus        25 ~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g  100 (355)
T TIGR00896        25 QIRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVG  100 (355)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence            45678999   99999999999999999999999999999999999999988888877766 678888889999999999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-----hhHHHHHHHH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-----NWRDAELVTS  169 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-----~w~~~~~i~~  169 (236)
                      .+...+....++.|.++ ++|                  ++..+..+....+|..+++.+...+.     +||+.|.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~  161 (355)
T TIGR00896       101 IAIINVLLPSLIKRDFP-QRV------------------GLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWA  161 (355)
T ss_pred             HHHHhccchHHHHHhCc-chh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            88877777778888886 578                  89999999998999988887766552     3888887666


Q ss_pred             hHH
Q psy12153        170 LPF  172 (236)
Q Consensus       170 ~~~  172 (236)
                      +..
T Consensus       162 ~~~  164 (355)
T TIGR00896       162 LPA  164 (355)
T ss_pred             HHH
Confidence            544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.51  E-value=1.6e-13  Score=118.42  Aligned_cols=150  Identities=15%  Similarity=0.166  Sum_probs=131.8

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHH
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSF---PVYLILRTMQGF   93 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~g~   93 (236)
                      .+|+++   |+.|.+++..+..+...+..++.|.+.||||.|++..++.++..+.++..++..+.   +.+++.+++.|+
T Consensus        41 ~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~  117 (417)
T COG2223          41 KSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL  117 (417)
T ss_pred             ccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence            478999   99999999999999999999999999999999999999999999999999986544   499999999999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---h---hHHHHHH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---N---WRDAELV  167 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~---w~~~~~i  167 (236)
                      + |+.+++...++++++|++++                  |.++++.. ..++|..+.+++++.+.   +   |+....+
T Consensus       118 ~-GasFav~m~~~s~~fP~~~q------------------G~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i  177 (417)
T COG2223         118 A-GASFAVGMPNASFFFPKEKQ------------------GLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI  177 (417)
T ss_pred             c-cceehcccccccccCChhhh------------------hHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            7 56778889999999999999                  99999999 88899888888877764   5   8888888


Q ss_pred             HHhHHHHHHHHHHhhcccchhH
Q psy12153        168 TSLPFVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       168 ~~~~~~~~~~~~~~~~pet~~~  189 (236)
                      ..+..++..+..++...|.|..
T Consensus       178 ~~~~l~v~~v~~~~~~~d~p~~  199 (417)
T COG2223         178 YVVALAIAAVLAWLGMNDVPEH  199 (417)
T ss_pred             HHHHHHHHHHHHHHHhCCChhh
Confidence            8777767778888888887764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.49  E-value=6.4e-13  Score=130.75  Aligned_cols=145  Identities=19%  Similarity=0.217  Sum_probs=115.5

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHhhhhhhHHHH
Q psy12153         27 CKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV---YNRSFPVYLILRTMQGFFVQGLQNSTY  103 (236)
Q Consensus        27 ~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~  103 (236)
                      ....+++.+++.++..++++++|+++||+|||++++++.++.++..++..   ..++++.+++.|+++|++.+...+...
T Consensus        46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  125 (1146)
T PRK08633         46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY  125 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence            45578999999999999999999999999999999988776655554433   356889999999999999999999999


Q ss_pred             HHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcch------------hHHHHHHHHhH
Q psy12153        104 TLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPN------------WRDAELVTSLP  171 (236)
Q Consensus       104 ~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~------------w~~~~~i~~~~  171 (236)
                      +++.|++|+++|                  ++++++.+.+..+|.++++.+++++..            |.+.+.+..+.
T Consensus       126 ~~i~~~~~~~~r------------------~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  187 (1146)
T PRK08633        126 GIIPELVGKENL------------------SRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLA  187 (1146)
T ss_pred             hhhHHhcCcccc------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence            999999999999                  999999999999999999998887632            33344333333


Q ss_pred             HHHHHHHHHhhcccchhH
Q psy12153        172 FVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~~  189 (236)
                      ..++.++..+.+||+|+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~  205 (1146)
T PRK08633        188 VAVLGLIFAYRLPKVPAA  205 (1146)
T ss_pred             HHHHHHHHHhcCcCCCCC
Confidence            334445555667887643

>TIGR00901 2A0125 AmpG-related permease

Probab=99.48  E-value=2.4e-12  Score=111.07  Aligned_cols=150  Identities=13%  Similarity=0.061  Sum_probs=113.4

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh-----CchHHH-HHHHHHHHHHHHHHHHh---ccHHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF-----GRRVIM-LISFYGQGAISIAIVYN---RSFPVYL   85 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-----Grr~~l-~~~~~~~~~~~~~~~~~---~~~~~~~   85 (236)
                      .+.+|+++   +.++.++..+. .+...+ .+++|+++||+     |||+.+ +.+.++.++.....++.   .+.+.+.
T Consensus        13 ~~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~   87 (356)
T TIGR00901        13 YWLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLA   87 (356)
T ss_pred             HHHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence            34568888   89999998765 444444 89999999998     898874 56677776766666665   3444555


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---h--
Q psy12153         86 ILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---N--  160 (236)
Q Consensus        86 ~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~--  160 (236)
                      ...++.+.+.+...+...+++.|++|+++|                  +++.+....+..+|.++++.++..+.   +  
T Consensus        88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r------------------~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~  149 (356)
T TIGR00901        88 GLAFLIAFFSATQDIALDAWRLEILSDEEL------------------GYGSTIYIVGYRAGMLLSGSLALVLASPEFAN  149 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHhhh------------------chHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            666677777777777788999999999999                  99999999999999999998886653   5  


Q ss_pred             ------hHHHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        161 ------WRDAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       161 ------w~~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                            ||..|++.++..++..++..+..||++
T Consensus       150 ~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       150 TGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence                  999999888877444444444567753

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.48  E-value=1.1e-12  Score=119.48  Aligned_cols=137  Identities=18%  Similarity=0.154  Sum_probs=111.2

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy12153         27 CKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLL  106 (236)
Q Consensus        27 ~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  106 (236)
                      .....|+.+.+.++..+..++.|.++|.||||.+++.+.++..+++++++.++|...++.+..+.|++.|... .....+
T Consensus        77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~i  155 (599)
T PF06609_consen   77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAI  155 (599)
T ss_pred             CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence            4666889999999999999999999999999999999999999999999999999999999999999876654 456668


Q ss_pred             HhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHhh
Q psy12153        107 IELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWF  182 (236)
Q Consensus       107 ~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~~  182 (236)
                      +|..|.|.|                  .....+......+....++.++..+.   +|||.|++..+...+..+..+++
T Consensus       156 sEl~p~k~R------------------~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  156 SELVPNKWR------------------GLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             HHhcccchh------------------hhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            999999888                  66666666555555556666665543   89999998888764544444444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.44  E-value=2.2e-12  Score=127.17  Aligned_cols=141  Identities=16%  Similarity=0.154  Sum_probs=112.6

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12153         28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLI---SFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      ...++..+++.+.++++++++|+++||+|||+++..   ..+...+........++++.++++|+++|++.+...+...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            456888889999999999999999999999997533   22222222233334578999999999999999999999999


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHh
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVW  181 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~  181 (236)
                      ++.+++++++|                  ++++++.+.+..+|.+++|.+++++.   +|++.|+..++.. +..++..+
T Consensus       132 ~l~~~~~~~~~------------------~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~  192 (1140)
T PRK06814        132 ILPDHLNKDEL------------------LGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIA-VLGWLASL  192 (1140)
T ss_pred             hhHhhcCcccc------------------chhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHHHHHh
Confidence            99999999999                  99999999999999999999999874   7888884444444 55555666


Q ss_pred             hcccch
Q psy12153        182 FIPESP  187 (236)
Q Consensus       182 ~~pet~  187 (236)
                      ++|+++
T Consensus       193 ~~~~~~  198 (1140)
T PRK06814        193 FIPKTG  198 (1140)
T ss_pred             hCCCCC
Confidence            677654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.43  E-value=4.7e-12  Score=111.04  Aligned_cols=151  Identities=15%  Similarity=0.142  Sum_probs=109.5

Q ss_pred             eeeeeeeecCcchhHHHHHHHHH-HHHhhhhhhhhhhhhhCchHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFL-GVILGSIPAGLLADRFGRRVIM-LISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~l~Dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+++++   +..+.++..+...+ +..++.+++++ +||+|||+.+ +.+.+...+...+..++++++.+++.+.+.+..
T Consensus        43 ~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  118 (393)
T PRK15011         43 TDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSF  118 (393)
T ss_pred             HhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            467888   89999999776555 55566666666 9999998875 455566566777777888888776655554544


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+....+..+..+++.|.                .+...+..+.+.++|.+++|.+++.+.   +||..|++.++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~  182 (393)
T PRK15011        119 GSTANPQMFALAREHADKTGRE----------------AVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVA  182 (393)
T ss_pred             HHhhHHHHHHHHHHHhhhccch----------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence            4566677777888877665451                033456778888899999999988774   899999988887


Q ss_pred             HHHHHHHHHhhcccch
Q psy12153        172 FVGFSLFYVWFIPESP  187 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~  187 (236)
                      .++..++..+++||.+
T Consensus       183 ~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        183 FIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHhhcCccC
Confidence            7566666677788864

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.41  E-value=1.7e-11  Score=107.78  Aligned_cols=147  Identities=14%  Similarity=0.144  Sum_probs=115.5

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh-----CchH-HHHHHHHHHHHHHHHHHHh---ccHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF-----GRRV-IMLISFYGQGAISIAIVYN---RSFPVYLILR   88 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~   88 (236)
                      ++-++   +.++.|++..+...  .+..+++|+++||+     |||+ .++++.++.+++.....+.   ++.+.+.+..
T Consensus        27 ~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~  101 (402)
T PRK11902         27 TVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLA  101 (402)
T ss_pred             HHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            34567   88999999777665  68999999999999     8775 6788888887777776765   3466666676


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc----chhHHH
Q psy12153         89 TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF----PNWRDA  164 (236)
Q Consensus        89 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~----~~w~~~  164 (236)
                      ++.++..+...+...+++.|+.|+++|                  ++.+++...+..+|.++++.+...+    .+||..
T Consensus       102 ~~~~~~~~~~~~~~~al~~~~~~~~~r------------------~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~  163 (402)
T PRK11902        102 VLVAFLSASQDIVFDAYSTDVLHPEER------------------GAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNT  163 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhh------------------hHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHH
Confidence            777777777778889999999999999                  9999999999999999988876654    279999


Q ss_pred             HHHHHhHHHHHHHHHHhhcccchh
Q psy12153        165 ELVTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       165 ~~i~~~~~~~~~~~~~~~~pet~~  188 (236)
                      |++.++.. +...+..++.||+++
T Consensus       164 f~i~a~~~-l~~~l~~~~~~e~~~  186 (402)
T PRK11902        164 YLLMAGLM-LAGALTTLWAPEPEV  186 (402)
T ss_pred             HHHHHHHH-HHHHHHHHhcCCCcc
Confidence            99888877 344444567787654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.39  E-value=9.1e-12  Score=110.34  Aligned_cols=141  Identities=15%  Similarity=0.189  Sum_probs=117.9

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhhhhhhHHHH
Q psy12153         28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR----SFPVYLILRTMQGFFVQGLQNSTY  103 (236)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~  103 (236)
                      ...+...++..++..++.++.|+++||+|||++++++.++..+.........    +.+.+++.+++.|++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5668888899999999999999999999999999999998888766666532    234566778899998888888888


Q ss_pred             HHHHhhcCccccccccchhhhhhccccccchhhHHHHH-HHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhHHH
Q psy12153        104 TLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTE-ICWTVGLVMLSLVSYWFP---------NWRDAELVTSLPFV  173 (236)
Q Consensus       104 ~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~i~~~~~---------~w~~~~~i~~~~~~  173 (236)
                      .++.|.+|+++|                  ++..++.+ ....+|..++|.+++.+.         +|+..|.+.+++.+
T Consensus       331 ~~i~~~~p~~~~------------------g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~  392 (418)
T TIGR00889       331 VFVEKEVPVHIR------------------ASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIA  392 (418)
T ss_pred             HHHHHHCCHHHH------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence            899999999999                  99999997 667889999998887753         38889988888887


Q ss_pred             HHHHHHHhhcccc
Q psy12153        174 GFSLFYVWFIPES  186 (236)
Q Consensus       174 ~~~~~~~~~~pet  186 (236)
                      +..++.++++||+
T Consensus       393 i~~~l~~~~~~~~  405 (418)
T TIGR00889       393 ILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHhCCc
Confidence            7788888888886

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.38  E-value=1.3e-11  Score=108.26  Aligned_cols=147  Identities=13%  Similarity=0.013  Sum_probs=102.2

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH---Hhc-----cHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV---YNR-----SFPVYLILRT   89 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~   89 (236)
                      +++|+   +..+.+++.+++.++..+++++.|+++||+|||+.++.+....++......   ..+     .....++.++
T Consensus        31 ~~~g~---s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (396)
T TIGR00882        31 DVNGL---SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL  107 (396)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            45777   899999999999999999999999999999999999887666554443221   111     2223455677


Q ss_pred             HHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHH
Q psy12153         90 MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELV  167 (236)
Q Consensus        90 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i  167 (236)
                      +.|++.+...+....+..+..+  ++                  +...+......++|..+++.+++.+.  +|+..|++
T Consensus       108 ~~g~~~~~~~~~~~~~~~~~~~--~~------------------~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~  167 (396)
T TIGR00882       108 YLGFVFSAGAGAIEAYIEKVSR--NS------------------NFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWL  167 (396)
T ss_pred             HHHHHhccchhhHHHHHHHhhh--hc------------------ccccchhhhhcccHHHHHHHHHhhhhccCchHHHHH
Confidence            7787777767766666666432  23                  33445555666777777777776653  89999998


Q ss_pred             HHhHHHHHHHHHHhhcccch
Q psy12153        168 TSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       168 ~~~~~~~~~~~~~~~~pet~  187 (236)
                      .++..++..++..+..||+|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~  187 (396)
T TIGR00882       168 GSGFALILMLLLMFAKPKAP  187 (396)
T ss_pred             HHHHHHHHHHHHHHhCCCCc
Confidence            88877555555544455543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.37  E-value=1.3e-11  Score=111.09  Aligned_cols=142  Identities=13%  Similarity=0.100  Sum_probs=109.7

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF-GRRVIMLISFYGQGAISIAIVYNR-SFPVYLILRTMQGFFV   95 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~   95 (236)
                      +++|+   +..+.+.+.+.+.....++.+++|+++||+ |||++++++.++..++.++..... +...+.++..+..++.
T Consensus        38 ~~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~  114 (493)
T PRK15462         38 NQLKY---DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY  114 (493)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence            34677   889999999999999999999999999999 999999999999988877665433 2223333334444556


Q ss_pred             hhhhHHHHHHHHhhcCcc--ccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153         96 QGLQNSTYTLLIELFPTR--WRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSL  170 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~  170 (236)
                      |...+...++++|.+|++  +|                  ....++.+...++|..++|.+.+++.   +|++.|.+.++
T Consensus       115 G~~~~~~~alv~elfp~~~~~R------------------~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        115 GLFKSNVSCLLGELYEPTDPRR------------------DGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             ccccccHHHHHHHHCCCCCccc------------------cceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            666676778999999876  46                  77889999899999999999999884   89999988665


Q ss_pred             HHHHHHHHHHh
Q psy12153        171 PFVGFSLFYVW  181 (236)
Q Consensus       171 ~~~~~~~~~~~  181 (236)
                      .. +.+++.++
T Consensus       177 gm-~l~li~~~  186 (493)
T PRK15462        177 GM-IAGLVIFL  186 (493)
T ss_pred             HH-HHHHHHHH
Confidence            44 44443333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.37  E-value=2.8e-11  Score=106.16  Aligned_cols=145  Identities=16%  Similarity=0.139  Sum_probs=111.3

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      +++++   +..+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+..++.+++.+++.+.
T Consensus       245 ~~~~~---~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        245 NELHL---PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34566   777888888887778888999999999999999988877666555554445566777777788888877776


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVG  174 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~  174 (236)
                      ..+....+..|.+|+ +|                  +...+..+....+|..+++.+++.+.   +|+..+.+.+++. +
T Consensus       322 ~~~~~~~~~~~~~p~-~~------------------g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~-~  381 (393)
T PRK15011        322 LGGIGMLYFQDLMPG-QA------------------GSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMI-I  381 (393)
T ss_pred             HHHHHHHHHHHhCCC-Cc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-H
Confidence            666677788888875 47                  88888888888899999998888764   6888888777666 5


Q ss_pred             HHHHHHhhccc
Q psy12153        175 FSLFYVWFIPE  185 (236)
Q Consensus       175 ~~~~~~~~~pe  185 (236)
                      +.++..+++||
T Consensus       382 ~~~~~~~~~~~  392 (393)
T PRK15011        382 ATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHhhcC
Confidence            56666666665

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.37  E-value=1.4e-11  Score=111.65  Aligned_cols=136  Identities=10%  Similarity=0.057  Sum_probs=109.9

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADR-FGRRVIMLISFYGQGAISIAIVYNR-SFPVYLILRTMQGFFV   95 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~   95 (236)
                      +++|+   +..+.++..+.+........+++|+++|| +|||++++++.++..++...+.+++ +.+.+.+.+.++|++.
T Consensus        50 ~~lg~---s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~  126 (500)
T PRK09584         50 KQLGM---SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGN  126 (500)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence            56777   78888888877776666667789999999 5999999999999999988888764 4556677889999998


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      |...+....++.|++|++++.                |....++.+.+.++|..++|.+.+++.   +||+.|.+.++..
T Consensus       127 g~~~~~~~~l~~~~f~~~~~~----------------~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~  190 (500)
T PRK09584        127 GLFKANPSSLLSTCYEKDDPR----------------LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM  190 (500)
T ss_pred             hcccCCHHHHHHHhcCCCchh----------------hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            888888889999999865430                045677888999999999999998874   7999998877544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.35  E-value=2.1e-11  Score=107.79  Aligned_cols=142  Identities=15%  Similarity=0.116  Sum_probs=114.3

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      +..+.+.+.++..++..++.+++|+++||+|||+.+.++.++..+...+.++.++.+.+.+.+.+.|++.+...+....+
T Consensus       260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  339 (420)
T PRK09528        260 GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY  339 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888888888899999999999999999999999888888888888888888888888999998877777777788


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHH-HHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHh
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV-TEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVW  181 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~  181 (236)
                      +.|.+|++.|                  +...+. .+....+|..+++.+.+++.   ||+..|.+.+++.++..++..+
T Consensus       340 ~~~~~~~~~~------------------a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        340 ITLNFDVRLS------------------ATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHcCccce------------------eeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            8899988877                  665544 56677888888888887764   7899999888877455555555


Q ss_pred             hccc
Q psy12153        182 FIPE  185 (236)
Q Consensus       182 ~~pe  185 (236)
                      ..++
T Consensus       402 ~~~~  405 (420)
T PRK09528        402 TLSG  405 (420)
T ss_pred             HhcC
Confidence            5544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.35  E-value=5.3e-11  Score=107.62  Aligned_cols=142  Identities=13%  Similarity=0.118  Sum_probs=109.8

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhh-----CchHH-HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRF-----GRRVI-MLISFYGQGAISIAIVYN---RSFPVYLILRTMQGFFVQ   96 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~   96 (236)
                      +..+.+.. +.....+ ++.+++|+++||+     |||+. ++++.++.+++...+++.   ++.+.+.+.+++.+++.+
T Consensus        45 ~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a  122 (491)
T PRK11010         45 DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSA  122 (491)
T ss_pred             CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence            66667765 2333333 6889999999999     99886 557767666666666654   367778888999999888


Q ss_pred             hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHH
Q psy12153         97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPF  172 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~  172 (236)
                      ...+...++..|++|+++|                  ++..++...+..+|.++++.+...+.    +||..|++.++..
T Consensus       123 ~~~i~~~a~~~~~~~~~~r------------------g~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~  184 (491)
T PRK11010        123 SQDIVFDAWKTDVLPAEER------------------GAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALL  184 (491)
T ss_pred             HHHHHHHHHHHHhcChhhh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            8888889999999999999                  99999999999999999987776652    7999999988877


Q ss_pred             HHHHHHHHhhcccchh
Q psy12153        173 VGFSLFYVWFIPESPL  188 (236)
Q Consensus       173 ~~~~~~~~~~~pet~~  188 (236)
                       ++..+..+++||+++
T Consensus       185 -ll~~l~~~~~~e~~~  199 (491)
T PRK11010        185 -IPCIIATLLAPEPTD  199 (491)
T ss_pred             -HHHHHHHHhcCCCcc
Confidence             444445555788753

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.32  E-value=6.2e-11  Score=103.81  Aligned_cols=137  Identities=15%  Similarity=0.114  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy12153         30 NAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIEL  109 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  109 (236)
                      .++..+.+.++..++.++.|++.||+|||+.+..+..+..++.......++.+.+++..++.|++.+..++.......|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  330 (399)
T PRK05122        251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR  330 (399)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            45566778888899999999999999999999988888888887777778887788888999999888888777888899


Q ss_pred             cCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHhhccc
Q psy12153        110 FPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWFIPE  185 (236)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~~~pe  185 (236)
                      .|+++|                  ++..++.+....+|..+++.+.+.+.   +|+..+++.++..++ .++..+++++
T Consensus       331 ~~~~~~------------------g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~  390 (399)
T PRK05122        331 VPPQNR------------------GAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALL-GLALTWLLYR  390 (399)
T ss_pred             CCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHHHHHhcc
Confidence            999989                  99999999999999888887777664   788888888777744 4444444444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.31  E-value=3.5e-11  Score=105.07  Aligned_cols=144  Identities=9%  Similarity=-0.086  Sum_probs=104.6

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCch----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRR----VIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG   92 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g   92 (236)
                      .+|++.   +..+.++..+++.++..++++++|.++||+|||    +.+.+.....  ........++.+.+++.|++.|
T Consensus        31 l~~~g~---s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g  105 (382)
T PRK11128         31 LKGQGY---TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFN  105 (382)
T ss_pred             HHhcCC---CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHH
Confidence            456777   999999999999999999999999999999984    3332222211  2222334578899999999999


Q ss_pred             HhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHH
Q psy12153         93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTS  169 (236)
Q Consensus        93 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~  169 (236)
                      ++.+...+...++..++  .++|                  ++..+......++|..++|.+++++.   +||..|++.+
T Consensus       106 ~~~~~~~~~~~a~~~~~--~~~~------------------~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~  165 (382)
T PRK11128        106 LFFSPLVPLTDALANTW--QKQI------------------GLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT  165 (382)
T ss_pred             HHHcccccHHHHHHHHH--Hhhc------------------cCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            98887778777777776  3446                  66677777777888888888888773   8999988777


Q ss_pred             hHHHHHHHHHHhhcccc
Q psy12153        170 LPFVGFSLFYVWFIPES  186 (236)
Q Consensus       170 ~~~~~~~~~~~~~~pet  186 (236)
                      +.. +...+..++.||.
T Consensus       166 ~~~-~~~~~~~~~~~~~  181 (382)
T PRK11128        166 AGV-ASMLLGQLLRPTI  181 (382)
T ss_pred             HHH-HHHHHHHHccCCC
Confidence            654 3333344445654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.31  E-value=6.5e-11  Score=106.04  Aligned_cols=143  Identities=15%  Similarity=0.054  Sum_probs=102.1

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh--cc-HH-HHHHHHHHHHHhhhh-hhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN--RS-FP-VYLILRTMQGFFVQG-LQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~l~g~~~~~-~~~  100 (236)
                      +.....+......+...++.++.++++||+|||+.++.+.++.+++.+.....  .+ .+ ......++.+.+.+. ..+
T Consensus       304 ~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (479)
T PRK10077        304 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGP  383 (479)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccc
Confidence            55556666677788889999999999999999999999998888887766532  12 11 122223333333332 235


Q ss_pred             HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhH
Q psy12153        101 STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---------NWRDAELVTSLP  171 (236)
Q Consensus       101 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---------~w~~~~~i~~~~  171 (236)
                      ....++.|.+|+++|                  +...++......+|..+++.+.+.+.         +|+..|++.++.
T Consensus       384 ~~~~~~~e~~p~~~r------------------~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  445 (479)
T PRK10077        384 VCWVLLSEIFPNAIR------------------GKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM  445 (479)
T ss_pred             hhHHHhHhhCChhHH------------------HHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHH
Confidence            567888888888888                  99999999999999888866555332         466778877777


Q ss_pred             HHHHHHHHHhhcccc
Q psy12153        172 FVGFSLFYVWFIPES  186 (236)
Q Consensus       172 ~~~~~~~~~~~~pet  186 (236)
                      .++..++.+++.||+
T Consensus       446 ~~~~~~~~~~~~~e~  460 (479)
T PRK10077        446 GVLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHHhccccC
Confidence            656666667778887

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.30  E-value=8.7e-11  Score=103.02  Aligned_cols=139  Identities=21%  Similarity=0.174  Sum_probs=111.2

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      +..+.+...+.+.++..++.++.|+++||+|||+.+..+.+...++.......++.+.+.+..++.|++.++..+....+
T Consensus       253 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  332 (406)
T PRK11551        253 SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYAL  332 (406)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            77888999999999999999999999999999999888777777766666667777767777777888777777888899


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHHHHHHHHHHh
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPFVGFSLFYVW  181 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~~~~~~~~~~  181 (236)
                      ..|.+|+++|                  ++..++.+....+|..++|.+.+.+.    +|...+++..... +.+.+..+
T Consensus       333 ~~~~~p~~~~------------------g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~-~~~~~~~~  393 (406)
T PRK11551        333 APLFYPTQVR------------------GTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVI-LVAALAAL  393 (406)
T ss_pred             HHHHcchhhh------------------hhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHH-HHHHHHHH
Confidence            9999999999                  99999999999999999999988874    3455555555444 44444444


Q ss_pred             hc
Q psy12153        182 FI  183 (236)
Q Consensus       182 ~~  183 (236)
                      .+
T Consensus       394 ~~  395 (406)
T PRK11551        394 LL  395 (406)
T ss_pred             HH
Confidence            33

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.30  E-value=8.8e-11  Score=99.76  Aligned_cols=132  Identities=22%  Similarity=0.235  Sum_probs=120.7

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRV-IMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      +..+.++......++..++.++.+++.||+|||+ .+..+..+..++.......++.+...+..++.|++.+...+....
T Consensus       209 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  288 (352)
T cd06174         209 SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT  288 (352)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHH
Confidence            8888999999999999999999999999999999 999999999999998888888888889999999999999999999


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHH
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGF  175 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~  175 (236)
                      ++.|..|+++|                  ++..+..+....+|..+++.+.+.+.   +|+..+++.+++.++.
T Consensus       289 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~  344 (352)
T cd06174         289 LASELAPPEAR------------------GTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA  344 (352)
T ss_pred             HHHhhcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHH
Confidence            99999999999                  99999999999999999999988774   7888888888877333

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.28  E-value=1.8e-10  Score=99.60  Aligned_cols=145  Identities=18%  Similarity=0.174  Sum_probs=111.7

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      ++++.   +..+.++..........++.++.|++.||+|||+.+.++.++..+........++.+.+.+.+.+.|++.+.
T Consensus       228 ~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       228 HELGL---PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555   777788887777777788889999999999999998887776666555555566777777788888988888


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVG  174 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~  174 (236)
                      ..+....+..|..|+ ++                  +...+..+....+|..++|.+.+.+.   +|+..|++.++.. +
T Consensus       305 ~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~-~  364 (375)
T TIGR00899       305 LAGIGMLYFQDLMPG-RA------------------GAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVML-I  364 (375)
T ss_pred             HHHHHHHHHHHhCcc-hh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH-H
Confidence            778788888898875 56                  77888888888899999998888764   6888888887776 5


Q ss_pred             HHHHHHhhccc
Q psy12153        175 FSLFYVWFIPE  185 (236)
Q Consensus       175 ~~~~~~~~~pe  185 (236)
                      ...+..++++|
T Consensus       365 ~~~~~~~~~~~  375 (375)
T TIGR00899       365 VALFCLLLIKD  375 (375)
T ss_pred             HHHHHHheecC
Confidence            54445555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.27  E-value=7.1e-11  Score=101.51  Aligned_cols=134  Identities=16%  Similarity=0.041  Sum_probs=109.8

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSF--PVYLILRTMQGFFV   95 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~   95 (236)
                      ++++.   +..+.++..+.+.++..++.++.|+++||+|||+.+.++.++..++.......++.  ..+.....+.|++.
T Consensus       233 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  309 (377)
T TIGR00890       233 QSLGL---SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTW  309 (377)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Confidence            34555   67778889999999999999999999999999999999888888887777665543  23345567778777


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      +...+....++.|.+|+++|                  ++..++.+....+|..++|.+.+.+.   +|+..|.+.+++.
T Consensus       310 g~~~~~~~~~~~~~~~~~~~------------------~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~  371 (377)
T TIGR00890       310 GGTISLFPSLVSDIFGPANS------------------AANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA  371 (377)
T ss_pred             ccchhccHHHHHHHhhhhhh------------------hhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence            77777777889999999999                  99999999999999999999888764   7888888777665

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.26  E-value=5.6e-11  Score=106.99  Aligned_cols=133  Identities=18%  Similarity=0.114  Sum_probs=98.3

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN--RSFPVYLILRTMQGFFV   95 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~   95 (236)
                      +++++   +..+.+++.+...++..++.++.|+++||+|||++++.+.++..+..+.....  .+.+...+..++.+...
T Consensus       304 ~~~g~---~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (496)
T PRK03893        304 TDLGY---DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLG  380 (496)
T ss_pred             hhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence            36667   88899999999999999999999999999999999888876666655444332  23333333344444333


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+..+....++.|.+|+++|                  +...++......+|..++|.+++.+.   +|+..+...+..
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        381 QGISGLLPKLIGGYFDTEQR------------------AAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             cccchhhHHHHHhhCCHHHh------------------hcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            33445667788899999889                  99999998888999999999888774   566666544443

>KOG0569|consensus

Probab=99.26  E-value=2.9e-10  Score=101.49  Aligned_cols=148  Identities=15%  Similarity=0.110  Sum_probs=112.6

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc---cHH------HHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR---SFP------VYLILR   88 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~------~~~~~~   88 (236)
                      .+-++   +..+..+.+....+...+.++++.++.||+|||+.++.+..++.+..+++....   +..      ..++..
T Consensus       298 ~~aG~---~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~  374 (485)
T KOG0569|consen  298 KTAGF---TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAI  374 (485)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34456   788888999999999999999999999999999999999999998888776421   111      112233


Q ss_pred             HHHHHhhh-hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcch-h-HHHH
Q psy12153         89 TMQGFFVQ-GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPN-W-RDAE  165 (236)
Q Consensus        89 ~l~g~~~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~-w-~~~~  165 (236)
                      ++..++.+ +..|+.+.+.+|++|++.|                  ..+.+.......++.++.....+.+.+ + ...|
T Consensus       375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R------------------~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~f  436 (485)
T KOG0569|consen  375 FLFIISFAIGPGPIPWFIGAELFPQSAR------------------SAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVF  436 (485)
T ss_pred             HHHHHhhhcCCCchhHHHHHHhCCccch------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence            33333322 4467778888999998888                  999999988888888887776666642 2 1677


Q ss_pred             HHHHhHHHHHHHHHHhhcccc
Q psy12153        166 LVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       166 ~i~~~~~~~~~~~~~~~~pet  186 (236)
                      +...+++.+..+..++.+|||
T Consensus       437 ilF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  437 ILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHHHHHHHHHHhCccc
Confidence            788888878888999999999

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.26  E-value=1.2e-10  Score=101.70  Aligned_cols=132  Identities=7%  Similarity=-0.103  Sum_probs=100.0

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHH-HHHHHH-HHHHHhccHHHHHHHHHHHHHh
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFY-GQGAIS-IAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      .+++++   +..+.+++.+++.+...++++++|.++||+|||........ ...+.. .....+++++.+++.|.+++.+
T Consensus        31 l~~~g~---s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~  107 (382)
T TIGR00902        31 LKGIGL---GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALF  107 (382)
T ss_pred             HHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            456778   99999999999999999999999999999998543322111 111111 2233567899999999999988


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      .+...+...++..+.  .++|                  ++..+......++|.+++|.+++.+.   +||..|.+....
T Consensus       108 ~~~~~p~~~al~~~~--~~~~------------------~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       108 FSAGMPIGDALANTW--QKQF------------------GLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HccchhHHHHHHHHH--HHHc------------------CCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            877778777776654  4567                  77888888888899999988877764   899988876654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.25  E-value=7.2e-11  Score=104.47  Aligned_cols=149  Identities=15%  Similarity=0.131  Sum_probs=111.9

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhh----hCc-hHHHHHHHHHHHHHHHHHHHhcc------HHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADR----FGR-RVIMLISFYGQGAISIAIVYNRS------FPVYLI   86 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~   86 (236)
                      +++++   +..+.+++.++..+..++..++.|.++||    +|| |+.++++....+++.+++...++      ...+++
T Consensus        28 ~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  104 (437)
T TIGR00792        28 DVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYI  104 (437)
T ss_pred             HccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            46788   99999999999999999999999999998    677 45677788888877777766553      234455


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhc-CccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc-------
Q psy12153         87 LRTMQGFFVQGLQNSTYTLLIELF-PTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF-------  158 (236)
Q Consensus        87 ~~~l~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~-------  158 (236)
                      .+++.+++.+.......++..|.. ++++|                  ++..+..+....+|..+++.+...+       
T Consensus       105 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~R------------------~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~  166 (437)
T TIGR00792       105 TYILLGLFYSFVNIPYWSLVPAITLDPRER------------------ESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG  166 (437)
T ss_pred             HHHHHHHHHHhhcccHhhCcccccCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            666777776665556677888887 45778                  8888888888888776665443221       


Q ss_pred             ---chhHHHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        159 ---PNWRDAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       159 ---~~w~~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                         .+|++.+.+.+++.++..++..+..||++
T Consensus       167 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       167 DDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence               26999998888887666666677788865

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.25  E-value=2e-10  Score=101.33  Aligned_cols=147  Identities=14%  Similarity=0.096  Sum_probs=121.1

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQ   99 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   99 (236)
                      +|.   +..+.+++.+...++..++.++.+++.||.++++.+..+..+.+++.++....++.+...+..++.|++.+...
T Consensus       254 ~g~---~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        254 WQM---GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             cCC---ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            566   77888999999999999999999999999888888888888777777777777777777778888888877776


Q ss_pred             HHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHH
Q psy12153        100 NSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFS  176 (236)
Q Consensus       100 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~  176 (236)
                      +....++.|..|++.|                  ++..++......+|..+++.+.+.+.   +++..++..+....+..
T Consensus       331 ~~~~~~~~~~~p~~~~------------------g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~  392 (417)
T PRK10489        331 LLQYTLLQTQTPDEML------------------GRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIG  392 (417)
T ss_pred             HHHHHHHHhhCCHHHH------------------HHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence            7777889999999999                  99999999999999999999888875   45667776776665666


Q ss_pred             HHHHhhcccch
Q psy12153        177 LFYVWFIPESP  187 (236)
Q Consensus       177 ~~~~~~~pet~  187 (236)
                      ++..+.+|+.+
T Consensus       393 ~~~~~~~~~~~  403 (417)
T PRK10489        393 VLLLLVLGELR  403 (417)
T ss_pred             HHHHHhccccc
Confidence            77777778763

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.25  E-value=2.2e-10  Score=100.26  Aligned_cols=135  Identities=17%  Similarity=0.109  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy12153         30 NAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIEL  109 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  109 (236)
                      .+.+.++..++..++.+..|+++||+|||+.+..+..+..+..+.....++.+.+.+.+++.|++.+...+....++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            34555666777888889999999999999999998888877777777777788888888999999988888888888888


Q ss_pred             cCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHhh
Q psy12153        110 FPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWF  182 (236)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~~  182 (236)
                      .+++.|                  ++..+.......+|..++|.+++.+.   +|+..|++.++..++..++.++.
T Consensus       340 ~~~~~~------------------g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        340 SSNQIA------------------GRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             CCcccc------------------eeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            888888                  99999999999999999999988764   78999998888774544444443

>PRK12382 putative transporter; Provisional

Probab=99.24  E-value=2.7e-10  Score=99.57  Aligned_cols=133  Identities=11%  Similarity=0.028  Sum_probs=111.2

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy12153         30 NAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIEL  109 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  109 (236)
                      .++....+.++..++.++.|++.||+|||+.+..+..+..++.......++.+...+..++.|++.+...+.....+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45566677788889999999999999999999998888888887777778887777888899998888888778888999


Q ss_pred             cCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHH
Q psy12153        110 FPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYV  180 (236)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~  180 (236)
                      +|+++|                  ++..+..+....+|..++|.+.+.+.   +|+..|.+.+++.++..+...
T Consensus       331 ~~~~~~------------------g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        331 VPSQVR------------------GTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             cCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            999999                  99999999999999999998888774   789999888877744444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.23  E-value=8.4e-11  Score=104.07  Aligned_cols=149  Identities=16%  Similarity=0.117  Sum_probs=109.1

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH-----hc------cHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY-----NR------SFPVYLI   86 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~------~~~~~~~   86 (236)
                      +++++   +..+.++......++..++.++.|+++||+|||+.+.++..+.+++.++...     .+      +...+..
T Consensus       312 ~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (481)
T TIGR00879       312 ENAGV---STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVF  388 (481)
T ss_pred             HHcCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHH
Confidence            34555   6677788888899999999999999999999999999888777777666652     11      2222222


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHH
Q psy12153         87 LRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRD  163 (236)
Q Consensus        87 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~  163 (236)
                      ..++.+.......+....++.|.+|++.|                  +...++......+|.++++.+.+.+.   +|++
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------------------~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~  450 (481)
T TIGR00879       389 ILLFIAFFAMGWGPVPWVIVSEIFPLSLR------------------PKGISIAVAANWLANFIVGFLFPTMLESIGVGG  450 (481)
T ss_pred             HHHHHHHHHccccCeehhhhhccCChHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            22222222223345556777899988888                  99999999999999999998877763   6888


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccch
Q psy12153        164 AELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                      .|++.++++++..++..++.||++
T Consensus       451 ~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       451 VFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             eehhHHHHHHHHHHHHheecccCC
Confidence            888888887566666667778863

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.23  E-value=1.9e-10  Score=101.70  Aligned_cols=148  Identities=11%  Similarity=-0.008  Sum_probs=90.9

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---hccHH-HHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY---NRSFP-VYLILRTMQGF   93 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~l~g~   93 (236)
                      +++|+   +..+.+++.+++.++..++++++|+++||+|||++++++..+.++.......   .+... .......+.++
T Consensus        39 ~~~g~---s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (420)
T PRK09528         39 DINGL---SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGI  115 (420)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788   9999999999999999999999999999999999998866655544332211   11100 01111222222


Q ss_pred             hhhhhhHHHHHHHHhhcC--ccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHH
Q psy12153         94 FVQGLQNSTYTLLIELFP--TRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTS  169 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~  169 (236)
                      ..+.........+.++.+  .+++                  +...+.......+|..+++.+++.+.  +|+..|++.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~------------------g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~  177 (420)
T PRK09528        116 YLGFGFLAGAGAIEAYIERVSRRS------------------GFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGS  177 (420)
T ss_pred             HhhhhhccchhhhhhHHHHHHhhc------------------cccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHH
Confidence            222222222222222222  1233                  56667777777788888888777663  7899998888


Q ss_pred             hHHHHHHHHHHhhcccc
Q psy12153        170 LPFVGFSLFYVWFIPES  186 (236)
Q Consensus       170 ~~~~~~~~~~~~~~pet  186 (236)
                      +..++..++.++..||.
T Consensus       178 ~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        178 GSALILLVLLFFAKPDA  194 (420)
T ss_pred             HHHHHHHHHHhcccccc
Confidence            77744444444444443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.22  E-value=1.3e-10  Score=104.07  Aligned_cols=129  Identities=11%  Similarity=0.080  Sum_probs=104.4

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhh--CchHHHHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRF--GRRVIMLI--SFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNS  101 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  101 (236)
                      +..+.++..++..++..++.++.|+++||.  ++|+..++  +.++.++..+.....++.+.+++.+++.|++.+...+.
T Consensus       274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~  353 (455)
T TIGR00892       274 DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGAL  353 (455)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHH
Confidence            778889999999999999999999999983  34433333  33434444455556778888888899999998888888


Q ss_pred             HHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHH
Q psy12153        102 TYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPF  172 (236)
Q Consensus       102 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~  172 (236)
                      ...++.|..|++++                  +...++.+....+|..++|.+.+.+.    +|+..|++.++..
T Consensus       354 ~~~~~~~~~~~~~~------------------g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~  410 (455)
T TIGR00892       354 LFEVLMDLVGAQRF------------------SSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIV  410 (455)
T ss_pred             HHHHHHHHhhHHHH------------------hhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHH
Confidence            89999999999999                  99999999999999999999988763    5888888877766

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.22  E-value=4.2e-10  Score=100.99  Aligned_cols=134  Identities=16%  Similarity=0.062  Sum_probs=95.9

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHH--HHHhccHHHHHHHHHHHHHhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIA--IVYNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~   95 (236)
                      +++|+   +..+.++..+...++..++.+.+|+++||+|||+.+.....+..+....  ....++.....+..++.|++.
T Consensus       287 ~~~g~---s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  363 (467)
T PRK09556        287 QELGF---SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV  363 (467)
T ss_pred             HccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            45666   8888899999999999999999999999999988776654443333222  223345555556777777654


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHH-HHHHHHHHHHhcc---------------
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTV-GLVMLSLVSYWFP---------------  159 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~i~~~~~---------------  159 (236)
                      .+..........|.+|++.|                  +.+.++.+....+ |..++|.+.+.+.               
T Consensus       364 ~~~~~~~~~~~~~~~p~~~~------------------g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~  425 (467)
T PRK09556        364 FGPQLLIGVAAVGFVPKKAI------------------GVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT  425 (467)
T ss_pred             hhHHHHHHHHHHhhcchhhH------------------HHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc
Confidence            33333334667799999999                  9999999888776 6677776665553               


Q ss_pred             hhHHHHHHHHhHH
Q psy12153        160 NWRDAELVTSLPF  172 (236)
Q Consensus       160 ~w~~~~~i~~~~~  172 (236)
                      +|+..|.+..+..
T Consensus       426 ~~~~~f~~~~~~~  438 (467)
T PRK09556        426 GWAGTFAALDIAA  438 (467)
T ss_pred             ChHHHHHHHHHHH
Confidence            3888888776665

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.21  E-value=3.7e-10  Score=97.36  Aligned_cols=151  Identities=13%  Similarity=0.112  Sum_probs=126.2

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV---YNRSFPVYLILRTMQ   91 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~   91 (236)
                      ...+.||+   +..+.+++...++.++.+++++.+++.+|+|+|+.++.+..+.++++.+..   ...++..++++-++.
T Consensus        38 ~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFil  114 (422)
T COG0738          38 HLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFIL  114 (422)
T ss_pred             HHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            44567889   999999999999999999999999999999999999999999999999885   567888899999999


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc------------
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP------------  159 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~------------  159 (236)
                      |.|.+........++..+.+++..                  ...+...+....+|..++|.++..+.            
T Consensus       115 a~Gi~~LetaaNp~v~~lg~~~~a------------------~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~  176 (422)
T COG0738         115 ASGIGLLETAANPYVTLLGKPESA------------------AFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ  176 (422)
T ss_pred             HhhhHHHHhccchHHHHhCCchhH------------------HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence            999999999999999999998766                  77789999999999999998887652            


Q ss_pred             ----------hhHHHHHHHHhHHHHHHHHHHhh-cccc
Q psy12153        160 ----------NWRDAELVTSLPFVGFSLFYVWF-IPES  186 (236)
Q Consensus       160 ----------~w~~~~~i~~~~~~~~~~~~~~~-~pet  186 (236)
                                .++++|...+...+++.+..... .|+.
T Consensus       177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~  214 (422)
T COG0738         177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDL  214 (422)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcC
Confidence                      25677777766664444333332 3543

>PRK09952 shikimate transporter; Provisional

Probab=99.21  E-value=7.7e-10  Score=98.57  Aligned_cols=142  Identities=14%  Similarity=0.102  Sum_probs=96.6

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---hc-cHHHHHHHHHHHHHhhhhhhHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY---NR-SFPVYLILRTMQGFFVQGLQNS  101 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~g~~~~~~~~~  101 (236)
                      +.........+..+...++.+..|+++||+|||++++++.++..+.......   .. +...++...++.+++.+...+.
T Consensus       284 s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  363 (438)
T PRK09952        284 PRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCV  363 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455556667788889999999999999988887665554433322   22 2333344556667777777777


Q ss_pred             HHHHHHhhcCccccccccchhhhhhccccccchhhHHHH-HHHHHHHHHHHHHHHHhcc-----hhHHHHHHHHhHHHHH
Q psy12153        102 TYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVT-EICWTVGLVMLSLVSYWFP-----NWRDAELVTSLPFVGF  175 (236)
Q Consensus       102 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~l~~~i~~~~~-----~w~~~~~i~~~~~~~~  175 (236)
                      ...++.|.+|++.|                  +...++. ..+..+|+.++|.+.+++.     +|+..+.+.++.. ++
T Consensus       364 ~~~~~~e~~p~~~r------------------~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~-~i  424 (438)
T PRK09952        364 QQPMFTEMFGASYR------------------YSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC-LI  424 (438)
T ss_pred             HHHHHHHHCCcchh------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH-HH
Confidence            88999999999888                  7666664 4455578888888877762     3777777666666 44


Q ss_pred             HHHHHhhcccc
Q psy12153        176 SLFYVWFIPES  186 (236)
Q Consensus       176 ~~~~~~~~pet  186 (236)
                      ..+..+.++|+
T Consensus       425 ~~v~~~~~~~~  435 (438)
T PRK09952        425 SAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHcccc
Confidence            45555566775

>TIGR00898 2A0119 cation transport protein

Probab=99.20  E-value=4e-10  Score=101.82  Aligned_cols=134  Identities=19%  Similarity=0.132  Sum_probs=102.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhhhhhhHHHHHHHHhhcCc
Q psy12153         35 TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSF--PVYLILRTMQGFFVQGLQNSTYTLLIELFPT  112 (236)
Q Consensus        35 ~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~  112 (236)
                      .+..+..+++.++.+++.||+|||+.+.++.++.+++.++....++.  +...+..++.+++.+..++..+.+..|.+|+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  441 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT  441 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence            34456667788889999999999999999998888888877766543  4444555566666677778888888999999


Q ss_pred             cccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        113 RWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-NWRDAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-~w~~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                      +.|                  +...++.+....+|.+++|.+.+... ++..++++.++.. ++..+..+++|||.
T Consensus       442 ~~r------------------~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lpet~  498 (505)
T TIGR00898       442 VVR------------------NLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLA-LLAGILTLFLPETK  498 (505)
T ss_pred             HHH------------------hhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHcCcCCC
Confidence            888                  99999999999999999999887322 4456677777766 44445556789973

>KOG2504|consensus

Probab=99.19  E-value=1.4e-10  Score=104.93  Aligned_cols=151  Identities=17%  Similarity=0.117  Sum_probs=127.9

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLIL-RTMQGF   93 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~   93 (236)
                      +..++++-   +..+.+|+.++..-...+..++.+.+.||+|.|++.+.|.++.+++.++..++++.+.+++. -++.|+
T Consensus        71 ~~~~~f~~---s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~  147 (509)
T KOG2504|consen   71 ELMDYFGS---SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGL  147 (509)
T ss_pred             HHHHHhCC---CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence            34466776   88889999999999999999999999999999999999999999999999999999887765 577889


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSL  170 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~  170 (236)
                      |.+..+.....++..+|+ ++|                  +.+.++...+..+|.++-|.+...+.   |||+.+++.+.
T Consensus       148 G~~~~~~paiviv~~YF~-kkR------------------~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~  208 (509)
T KOG2504|consen  148 GLGLIYLPAVVILGTYFE-KKR------------------ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGG  208 (509)
T ss_pred             cchhhhcchhhhhhhHhH-HHH------------------HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHH
Confidence            999988888888887775 568                  89999999999999998888887774   89999998888


Q ss_pred             HHHHHHHHHHhhcccch
Q psy12153        171 PFVGFSLFYVWFIPESP  187 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet~  187 (236)
                      +.+-..+.....-|.++
T Consensus       209 ~~l~~~~~~~~~rp~~~  225 (509)
T KOG2504|consen  209 ISLNVLVAGALLRPLSP  225 (509)
T ss_pred             HHHHHHHHHHHcCCCCc
Confidence            87455555555555443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.18  E-value=7.6e-10  Score=99.29  Aligned_cols=151  Identities=17%  Similarity=0.115  Sum_probs=113.0

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhh----hhCchHHHHHH-HHHHHHHHHHHHHhccHH----------
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLAD----RFGRRVIMLIS-FYGQGAISIAIVYNRSFP----------   82 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~D----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~----------   82 (236)
                      +++++   +....+++..+..+...+.+++.|+++|    |+|||+.++++ .+...++..+++++++..          
T Consensus        32 ~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~  108 (477)
T TIGR01301        32 QELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKK  108 (477)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccccc
Confidence            45667   8899999999999999999999999999    59999988774 566666666666655432          


Q ss_pred             -------HHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHH
Q psy12153         83 -------VYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVS  155 (236)
Q Consensus        83 -------~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~  155 (236)
                             ..+++-.+..++.....+...++++|..|+++|..                +.+.++.+...++|+++++.++
T Consensus       109 ~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~----------------~~a~~~~~~~~~lG~ilg~~~g  172 (477)
T TIGR01301       109 TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRT----------------RIANAYFSFFMAIGNVLGYAAG  172 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHH----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence                   22223333344666677778899999999886510                4678888889999999998887


Q ss_pred             Hhcc------------------hhHHHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        156 YWFP------------------NWRDAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       156 ~~~~------------------~w~~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                      +...                  +.+..|++.++..++..++..+..+|.|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       173 AYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            6530                  4577888888877667777888889975

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.16  E-value=7.7e-10  Score=100.19  Aligned_cols=132  Identities=19%  Similarity=0.278  Sum_probs=81.8

Q ss_pred             HHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHH-HHHhhhhhhHHHHHHHHhhcCc
Q psy12153         37 YFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRS---FPVYLILRTM-QGFFVQGLQNSTYTLLIELFPT  112 (236)
Q Consensus        37 ~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l-~g~~~~~~~~~~~~~~~e~~~~  112 (236)
                      ..++.+++.+..++++||+|||++++++..+.+++..+.....+   .......-.+ ..++..+..+..          
T Consensus       344 ~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  413 (502)
T TIGR00887       344 ALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATT----------  413 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh----------
Confidence            44456668888999999999999998888777776665553211   1111111111 111111222333          


Q ss_pred             cccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcch-------------hHHHHHHHHhHHHHHHHHH
Q psy12153        113 RWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPN-------------WRDAELVTSLPFVGFSLFY  179 (236)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~-------------w~~~~~i~~~~~~~~~~~~  179 (236)
                              |.|..|+||++.|++..++.+....+|.++++.+.+.+.+             +...|++.+++.++. .+.
T Consensus       414 --------~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~i~  484 (502)
T TIGR00887       414 --------FIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLG-ILF  484 (502)
T ss_pred             --------hhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHH-HHH
Confidence                    4444444455555999999999999999999988776532             245677777776343 345


Q ss_pred             Hhhcccch
Q psy12153        180 VWFIPESP  187 (236)
Q Consensus       180 ~~~~pet~  187 (236)
                      .+++|||.
T Consensus       485 ~~~lpEt~  492 (502)
T TIGR00887       485 TLLIPETK  492 (502)
T ss_pred             heEeccCC
Confidence            57789983

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.16  E-value=1.9e-09  Score=97.06  Aligned_cols=147  Identities=19%  Similarity=0.216  Sum_probs=125.1

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCch--HHHHHHHHHHHHHHHHHHH--------hccHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRR--VIMLISFYGQGAISIAIVY--------NRSFPVYLIL   87 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~   87 (236)
                      +++++   +..+...+..+..+..++|++++|++.||+|.|  ++++.+.++..+.++...+        .++.+.+.+.
T Consensus       310 ~~lg~---s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~  386 (477)
T PF11700_consen  310 EVLGM---STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL  386 (477)
T ss_pred             HhcCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence            47888   899999999999999999999999999999999  8888888777666665555        6778888889


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHH
Q psy12153         88 RTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRD  163 (236)
Q Consensus        88 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~  163 (236)
                      .++.|+..|..++..-++++|+.|+++.                  +..++++.+..-..+.+||++.+.+.    +.|.
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e------------------~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~  448 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGRE------------------AEFFGLYAITGKASSWLGPLLFGLITDATGSQRY  448 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence            9999999999999999999999999999                  99999999999999999999888774    4677


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccc
Q psy12153        164 AELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                      .++...++. ++.++..+.+++.
T Consensus       449 g~~~l~~lf-~~gl~ll~~v~~~  470 (477)
T PF11700_consen  449 GFLFLLVLF-LIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHHHH-HHHHHHHhhccch
Confidence            777666666 5666666666654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.15  E-value=1.2e-09  Score=96.91  Aligned_cols=85  Identities=11%  Similarity=0.036  Sum_probs=72.0

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCc-hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGR-RVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQ   96 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   96 (236)
                      +++|+   +..+.|++.+++.++..++++++|.++||+|| |+++.++.++..+...+..+.++++.+.+.|++.|++.+
T Consensus        31 ~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  107 (418)
T TIGR00889        31 KTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYM  107 (418)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHc
Confidence            46778   99999999999999999999999999999965 778888888888888888888889999999999888766


Q ss_pred             hhhHHHHHH
Q psy12153         97 GLQNSTYTL  105 (236)
Q Consensus        97 ~~~~~~~~~  105 (236)
                      ...+...++
T Consensus       108 ~~~~~~~~l  116 (418)
T TIGR00889       108 PTIALTNSI  116 (418)
T ss_pred             cHHHHHHHH
Confidence            655554444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.15  E-value=1.3e-09  Score=99.18  Aligned_cols=141  Identities=21%  Similarity=0.175  Sum_probs=114.7

Q ss_pred             cCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhhhhhh
Q psy12153         25 HECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY-----NRSFPVYLILRTMQGFFVQGLQ   99 (236)
Q Consensus        25 ~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~   99 (236)
                      +|....+++.....+-..+.++++|.++||++||++++.+-++.++......+     ..+.+.+++..++.|++.+...
T Consensus        42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~  121 (524)
T PF05977_consen   42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN  121 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            37888899999999999999999999999999999999988777665544443     2467888888999999999999


Q ss_pred             HHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHH
Q psy12153        100 NSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFS  176 (236)
Q Consensus       100 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~  176 (236)
                      |...+++.|+.|+++.                  ..++++.+...++...+||.+++.+.   |-.+.|.+.++.. +..
T Consensus       122 PA~~A~ip~lV~~~~L------------------~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsf-l~~  182 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDL------------------PAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSF-LIS  182 (524)
T ss_pred             HHHHHHHHHhccHhhH------------------HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            9999999999999888                  89999999999999999999998874   4566777666654 333


Q ss_pred             HHHHhhcc
Q psy12153        177 LFYVWFIP  184 (236)
Q Consensus       177 ~~~~~~~p  184 (236)
                      +...+.++
T Consensus       183 i~~l~~~~  190 (524)
T PF05977_consen  183 ILALLRWK  190 (524)
T ss_pred             HHHHHHcc
Confidence            43444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK03699 putative transporter; Provisional

Probab=99.13  E-value=1.6e-09  Score=95.00  Aligned_cols=146  Identities=12%  Similarity=0.066  Sum_probs=111.5

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      +++++   +..+.+...+.+.++..++.+..|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.+.
T Consensus       234 ~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  310 (394)
T PRK03699        234 KKFGM---SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSA  310 (394)
T ss_pred             HHcCC---ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            34666   888899999999999999999999999999999998887777777666666667776666677788888777


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVG  174 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~  174 (236)
                      .++....+..|..+. .+                  +...+.......+|..++|.+.+.+.   +++..+++.+++. +
T Consensus       311 ~~~~~~~~~~~~~~~-~~------------------~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~-~  370 (394)
T PRK03699        311 IYTTIITLGSQQTKV-AS------------------PKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLY-A  370 (394)
T ss_pred             HHHHHHHHHHHHccC-CC------------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHH-H
Confidence            778777777787754 35                  55667777778899999998888774   6788887777776 3


Q ss_pred             HHHHHHhhcccc
Q psy12153        175 FSLFYVWFIPES  186 (236)
Q Consensus       175 ~~~~~~~~~pet  186 (236)
                      ......+..++.
T Consensus       371 ~~~~~~~~~~~~  382 (394)
T PRK03699        371 VVFVMCILLGFV  382 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            333334444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.13  E-value=2e-09  Score=94.52  Aligned_cols=148  Identities=14%  Similarity=0.090  Sum_probs=111.2

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRS-FPVYLILRTMQGFFVQ   96 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~   96 (236)
                      +++++   +..+.+...+++.++..++.+..+++.||+|||+.+..+..+..++.......++ ....  ..++.|++.+
T Consensus       233 ~~~g~---s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g  307 (393)
T PRK09705        233 IEIGA---SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLG  307 (393)
T ss_pred             HHcCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhcc
Confidence            34556   8888899999999999999999999999999999998888777777665543332 2222  2345677777


Q ss_pred             hhhHHHHHHHHhhcC-ccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhH
Q psy12153         97 GLQNSTYTLLIELFP-TRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLP  171 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~  171 (236)
                      ...+.......+..+ +++|                  ++..+..+....++..++|.+.+++.    +|...|.+.++.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~------------------g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~  369 (393)
T PRK09705        308 GAFPLCLLLALDHSVQPAIA------------------GKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC  369 (393)
T ss_pred             chHHHHHHHHHhhcCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            777776666667764 5667                  88899988888888888988888774    467777777777


Q ss_pred             HHHHHHHHHhhcccchh
Q psy12153        172 FVGFSLFYVWFIPESPL  188 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~  188 (236)
                      .++..+...++.||++.
T Consensus       370 ~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        370 VVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHHHHHhcccccc
Confidence            75666666777888753

>PRK03545 putative arabinose transporter; Provisional

Probab=99.11  E-value=4.9e-09  Score=91.69  Aligned_cols=141  Identities=11%  Similarity=0.044  Sum_probs=105.0

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHhhhhh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISI-AIVYNRSFPVYLILRTMQGFFVQGL   98 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~   98 (236)
                      .++   +..+.+++.+...++..++.++.|+++||+|||+... +..+..++.. .....++.+.+.+..++.|++.+..
T Consensus       236 ~g~---s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~  311 (390)
T PRK03545        236 AGL---SENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCI  311 (390)
T ss_pred             cCC---CccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcc
Confidence            455   7788899999999999999999999999999887544 4444444433 3344566777777788888887666


Q ss_pred             hHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHH
Q psy12153         99 QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGF  175 (236)
Q Consensus        99 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~  175 (236)
                      .+.....+.+..| +.|                  ++..+.......+|..+|+.+++.+.   +++..|.+.+++.++.
T Consensus       312 ~~~~~~~~~~~~~-~~~------------------~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~  372 (390)
T PRK03545        312 GLAMQVKVLKLAP-DAT------------------DVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAA  372 (390)
T ss_pred             hHHHHHHHHHhCC-CcH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            6666777778766 577                  88888888888889989988888764   6788888888777444


Q ss_pred             HHHHHhhc
Q psy12153        176 SLFYVWFI  183 (236)
Q Consensus       176 ~~~~~~~~  183 (236)
                      .++..+..
T Consensus       373 ~~~~~~~~  380 (390)
T PRK03545        373 LVWSILIF  380 (390)
T ss_pred             HHHHHHHc
Confidence            44444444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.09  E-value=3e-09  Score=92.85  Aligned_cols=126  Identities=17%  Similarity=0.081  Sum_probs=99.3

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      +..+.++..+...++..+++++.|++.||+|||+.+..+.....++.....  . .........+.|++.....|.....
T Consensus       233 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~  309 (381)
T PRK03633        233 SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAW  309 (381)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            777888888899999999999999999999999998888777776655433  2 2233345666777666777888888


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      +.|..|++++                  +...+.....+.+|..++|.+++.+.   +|++.|.+.+.+.
T Consensus       310 ~~~~~~~~~~------------------~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~  361 (381)
T PRK03633        310 ACEKVEHHEL------------------VAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVS  361 (381)
T ss_pred             HHccCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            8999988777                  76777777888999999999888874   6788888777766

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.08  E-value=6.3e-09  Score=90.95  Aligned_cols=133  Identities=9%  Similarity=-0.020  Sum_probs=112.7

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      ++.|.   +..+.+...++..++..++.+..+++.||+|+|+.+.++.++..+.....+..++.+.++..+.+.|++.+.
T Consensus       233 ~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~  309 (382)
T TIGR00902       233 QAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAV  309 (382)
T ss_pred             HHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence            45666   888999999999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHH-HHHHHHHHHHHHHHHhcchh--HHHHHHHHhHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTE-ICWTVGLVMLSLVSYWFPNW--RDAELVTSLPF  172 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~i~~~~~~w--~~~~~i~~~~~  172 (236)
                      ..+....++.+. |+++|                  +...++++ ....+|..+++.+++.+.++  ...|++.+.+.
T Consensus       310 ~~~~~~~~i~~~-~~~~~------------------~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~  368 (382)
T TIGR00902       310 CHLAAMRYIAAQ-PGSEI------------------AKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIA  368 (382)
T ss_pred             HHHHHHHHHHhC-CHhhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999988 88888                  88788765 56778888888888887532  24555666655

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.07  E-value=1.1e-08  Score=90.51  Aligned_cols=122  Identities=12%  Similarity=0.129  Sum_probs=94.1

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN-RSFPVYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      +....++..++..++.+++.+++++++||+|||+++.++.++.+++.+...+. ++.+.+.+..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777788889999999999999999999999999988888777766654 35556667778888888888888899


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      +++|..+.++.           ..+.+.+|...++.+....+|..+++.+.+.+
T Consensus       335 ~~~~~~~~~~~-----------~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       335 LVADTVDYGEW-----------KTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHhhhhhhhhh-----------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998763321           01112228888999999999999988887765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.05  E-value=4.3e-09  Score=90.66  Aligned_cols=132  Identities=16%  Similarity=0.034  Sum_probs=91.8

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchH--HHH------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRV--IML------ISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~--~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      +..+.+++.+...++..++.+..|+++||+|||+  ...      .+.++..+........++.........+.+.+. +
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  327 (399)
T TIGR00893       249 SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL-G  327 (399)
T ss_pred             cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch-h
Confidence            7778889999999999999999999999999986  111      111111111111111223333333333333333 3


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---h-hHHHHHHHHhHHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---N-WRDAELVTSLPFV  173 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~-w~~~~~i~~~~~~  173 (236)
                      ..+....++.|.+|+++|                  +...++.+....+|..++|.+.+.+.   + |+..+++.++..+
T Consensus       328 ~~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~  389 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIA------------------GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALAL  389 (399)
T ss_pred             hhhHHHHHHHhhcChhHH------------------HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHH
Confidence            677888999999999999                  99999999999999999999988774   4 8888887777663


Q ss_pred             HHH
Q psy12153        174 GFS  176 (236)
Q Consensus       174 ~~~  176 (236)
                      +..
T Consensus       390 ~~~  392 (399)
T TIGR00893       390 IGA  392 (399)
T ss_pred             HHH
Confidence            333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.05  E-value=2.6e-09  Score=93.02  Aligned_cols=120  Identities=23%  Similarity=0.213  Sum_probs=96.1

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhhhh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIA-IVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      ++++   +..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.... ....++.+.+.+..++.++..+.
T Consensus       268 ~~g~---s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (405)
T TIGR00891       268 DLGL---SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQG  344 (405)
T ss_pred             HhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHcc
Confidence            4566   7888899999999999999999999999999999988877665333332 23344555555666667766666


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      ..+....++.|.+|+++|                  ++..++.+....+|..++|.+.+.+.
T Consensus       345 ~~~~~~~~~~~~~~~~~~------------------~~~~g~~~~~~~~g~~~g~~~~g~l~  388 (405)
T TIGR00891       345 IWGILPKHLGEYFPTDQR------------------AAGLGFTYQLGNLGGALAPIIGALLA  388 (405)
T ss_pred             chhhHHHHHhhhCCcchh------------------HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            677778899999999999                  99999999999999999999888875

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.05  E-value=1.8e-09  Score=97.34  Aligned_cols=143  Identities=17%  Similarity=0.102  Sum_probs=94.8

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCch-------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRR-------VIMLISFYGQGAISIAIVYNRSFPVYLILRTMQ   91 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   91 (236)
                      ++++   +..+.+...+++.++..++.+++|+++||+|||       ..+.+...+.++..++....++.+...+..++.
T Consensus       282 ~~g~---s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~  358 (476)
T PLN00028        282 RFGL---SLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILF  358 (476)
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            4566   788889999999999999999999999999875       222333333333334444455555444455555


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHH
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF--PNWRDAELVTS  169 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~--~~w~~~~~i~~  169 (236)
                      +++.+...+....+..+..| +.|                  +...++......+|..+++.+...-  .+|+..|++.+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~-~~~------------------g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~  419 (476)
T PLN00028        359 SIFVQAACGATFGIVPFVSR-RSL------------------GVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMG  419 (476)
T ss_pred             HHHHHHhhhhhcccCcccCh-hhc------------------hhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHH
Confidence            66554455555556666544 567                  8889998888888888887765422  25888888887


Q ss_pred             hHHHHHHHHHHhhcc
Q psy12153        170 LPFVGFSLFYVWFIP  184 (236)
Q Consensus       170 ~~~~~~~~~~~~~~p  184 (236)
                      ++. +++.+..++++
T Consensus       420 ~~~-~i~~~~~~~~~  433 (476)
T PLN00028        420 VMI-IACTLPVAFIH  433 (476)
T ss_pred             HHH-HHHHHHHHhee
Confidence            776 44444445544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.03  E-value=1.6e-08  Score=86.41  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=109.6

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      +++++   +..+++.+....+....+...+.|.++||+|||+..+...++..++|+ +-..++++.++++|++.|++...
T Consensus        62 ~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSL  137 (354)
T PF05631_consen   62 ESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSL  137 (354)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHH
Confidence            34566   888999999999999999999999999999999999999999988886 56678999999999999999888


Q ss_pred             hhHHHHHHH-HhhcCccccccccchhhhhhccccccchhhHHHHH-HHHHHHHHHHHHHHHhcch-----hHHHHHHHHh
Q psy12153         98 LQNSTYTLL-IELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTE-ICWTVGLVMLSLVSYWFPN-----WRDAELVTSL  170 (236)
Q Consensus        98 ~~~~~~~~~-~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~i~~~~~~-----w~~~~~i~~~  170 (236)
                      .+..--+++ .|-   ++|           .||.++.+...+... ....+-.+++++++.++.+     -..+|....+
T Consensus       138 LfS~FEsW~V~Eh---~~~-----------g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~  203 (354)
T PF05631_consen  138 LFSAFESWMVHEH---NKR-----------GFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIV  203 (354)
T ss_pred             HHHHHHHHHHHHH---HHc-----------CCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHH
Confidence            877766644 343   122           356666555555444 3333344444555555432     3567777666


Q ss_pred             HHHHHHHHHHhhcccch
Q psy12153        171 PFVGFSLFYVWFIPESP  187 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet~  187 (236)
                      +.++..+++....+|.+
T Consensus       204 ~l~~~~~~I~~~W~ENy  220 (354)
T PF05631_consen  204 LLAVAAVLILKTWPENY  220 (354)
T ss_pred             HHHHHHHHHHhcccccC
Confidence            66555666666778864

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.02  E-value=3.7e-09  Score=91.79  Aligned_cols=147  Identities=16%  Similarity=0.142  Sum_probs=126.5

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      .++|+   +..+..++.....+..++|++++|+|.||+|.|+++..+.++..+.++...+......+.+.-.+.|.+.|+
T Consensus       281 ~~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~  357 (438)
T COG2270         281 ADLGL---SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGG  357 (438)
T ss_pred             HHcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcch
Confidence            48899   999999999999999999999999999999999999999999999888888877777778888899999999


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPFV  173 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~~  173 (236)
                      .++..-++.++..|+++-                  +..++++++....++.++|.+.+.+.    +-|.-+....++. 
T Consensus       358 ~qA~SRSy~~~lvp~~k~------------------~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll-  418 (438)
T COG2270         358 AQASSRSYLARLVPKGKE------------------GRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLL-  418 (438)
T ss_pred             HHHHHHHHHHHhCCCccc------------------cceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-
Confidence            999999999999999988                  99999999999999999998877764    4465555555544 


Q ss_pred             HHHHHHHhhcccc
Q psy12153        174 GFSLFYVWFIPES  186 (236)
Q Consensus       174 ~~~~~~~~~~pet  186 (236)
                      +..++..+.+|+.
T Consensus       419 ~iGl~~L~~v~~~  431 (438)
T COG2270         419 LIGLLLLLRVKVP  431 (438)
T ss_pred             HhhHhhEEeecCC
Confidence            5666666777764

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.02  E-value=4.9e-09  Score=90.60  Aligned_cols=132  Identities=17%  Similarity=0.189  Sum_probs=97.4

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHH--HHHHH--hccHHHHHHHHHHHHHh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAIS--IAIVY--NRSFPVYLILRTMQGFF   94 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~l~g~~   94 (236)
                      ++++   +..+.+.......++..++.++.|+++||+|||+.+.....+..+..  .....  .++.+......++.|++
T Consensus       249 ~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  325 (394)
T TIGR00883       249 TLGL---SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALI  325 (394)
T ss_pred             hcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            4555   77888888999999999999999999999999998775554444333  12222  24556666677788888


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHH-HHHHHHHHHHHHHHHHHhcc---h-hHHHHHHHH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV-TEICWTVGLVMLSLVSYWFP---N-WRDAELVTS  169 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~i~~~~~---~-w~~~~~i~~  169 (236)
                      .+...+....++.|.+|++.|                  ++..+. .+....+|..++|.+.+.+.   + |+..++...
T Consensus       326 ~~~~~~~~~~~~~~~~p~~~~------------------~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       326 GGMYTGPMGSFLPELFPTEVR------------------YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             HHHHhhhHHHHHHHhCCccce------------------eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            888888889999999999989                  777776 45666678888888877763   3 666655544


Q ss_pred             hH
Q psy12153        170 LP  171 (236)
Q Consensus       170 ~~  171 (236)
                      +.
T Consensus       388 ~~  389 (394)
T TIGR00883       388 AL  389 (394)
T ss_pred             HH
Confidence            43

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0253|consensus

Probab=99.01  E-value=1e-09  Score=93.73  Aligned_cols=132  Identities=17%  Similarity=0.213  Sum_probs=101.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccc
Q psy12153         37 YFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRI  116 (236)
Q Consensus        37 ~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~  116 (236)
                      ..+....|.++.+++.||+|||+++....+++++..++.....+.....+..+...++..+.+...++|..|++|++.| 
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR-  468 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR-  468 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh-
Confidence            3445678999999999999999999999999999988888776666666666666666777788888999999999999 


Q ss_pred             cccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153        117 GVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-NWRDAELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-~w~~~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                                       +...|..+.+..+|.++.|+++.... +-..+..+.+.+.++.++...++--||
T Consensus       469 -----------------atgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  469 -----------------ATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             -----------------hcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence                             99999999999999999999994333 223344555666634444444444455

>PRK10504 putative transporter; Provisional

Probab=99.00  E-value=1.6e-08  Score=90.51  Aligned_cols=116  Identities=12%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhhhhhhHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN---RSFPVYLILRTMQGFFVQGLQNST  102 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~  102 (236)
                      +..+.++......++..++.++.++++||+|||+++..+..+..+...+....   ++.+.+.+..++.|++.+...+..
T Consensus       295 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  374 (471)
T PRK10504        295 SPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSM  374 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888888888999999999999999998888777776665543   233334445667788888788888


Q ss_pred             HHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153        103 YTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus       103 ~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      ..+..+..|++.|                  +...+..+....+|..+++.+.+.+.
T Consensus       375 ~~~~~~~~~~~~~------------------g~~~~~~~~~~~~g~~ig~~i~g~ll  413 (471)
T PRK10504        375 NTLTLKDLPDNLA------------------SSGNSLLSMIMQLSMSIGVTIAGLLL  413 (471)
T ss_pred             HHHHHHcCCHHhc------------------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999989                  99999999999999999988877663

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.99  E-value=1.9e-09  Score=95.35  Aligned_cols=142  Identities=16%  Similarity=0.127  Sum_probs=118.1

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhhhhhhHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRF-GRRVIMLISFYGQGAISIAIVYNR--SFPVYLILRTMQGFFVQGLQNST  102 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~  102 (236)
                      ++++..-+.+.|.-..-+..+++||++||+ |+|+++..+.++..++.+..+..+  ....+.++-.+.++|.|..-+..
T Consensus        59 ~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~Ni  138 (498)
T COG3104          59 DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNI  138 (498)
T ss_pred             ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccH
Confidence            777777777777777778899999999997 999999999999999999999884  67778888888889999999999


Q ss_pred             HHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHH
Q psy12153        103 YTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFY  179 (236)
Q Consensus       103 ~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~  179 (236)
                      .+++.|.+|+++.               | |-..+++...+.++|++++|.+.+++.   +|+..|...++-. ..+++.
T Consensus       139 S~llg~ly~~~Dp---------------r-rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm-~~gl~~  201 (498)
T COG3104         139 SSLLGELYPKDDP---------------R-RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGM-IIGLVI  201 (498)
T ss_pred             HHHHHHhcCCCCc---------------c-cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-HHHHHH
Confidence            9999999987764               1 367788888899999999999999885   7888887766655 555555


Q ss_pred             Hhhcc
Q psy12153        180 VWFIP  184 (236)
Q Consensus       180 ~~~~p  184 (236)
                      +.+.+
T Consensus       202 f~~~~  206 (498)
T COG3104         202 FLLGR  206 (498)
T ss_pred             HHHcc
Confidence            55544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.98  E-value=2.4e-08  Score=87.54  Aligned_cols=138  Identities=19%  Similarity=0.167  Sum_probs=106.2

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      +....+...++..+...++.+..+++.||+|||+.+.++..+.++........++.+.+.+..++.|++..........+
T Consensus       252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  331 (396)
T TIGR00882       252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY  331 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888888888899999999999999999999888888877776777888888888888888866555555566


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHH-HHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHh
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV-TEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVW  181 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~  181 (236)
                      ..+..+++.+                  +...+. .+....+|..+++.+.+++.   ||+..|.+.+++.++..+...+
T Consensus       332 ~~~~~~~~~~------------------at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       332 ITSQFDVRLS------------------ATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHhCCcceE------------------EEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            6777776666                  665554 56788889999888887774   6788898888877555554433

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.97  E-value=1.3e-08  Score=89.72  Aligned_cols=116  Identities=18%  Similarity=0.166  Sum_probs=85.2

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--hhhhhHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF--VQGLQNSTY  103 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~  103 (236)
                      +..+.+...+...++..++.++.|+++||+|||+.+..+.++..+..+.....++.....+.-.+.|.+  ..+..+...
T Consensus       264 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (426)
T PRK12307        264 DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVP  343 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHH
Confidence            667778888888999999999999999999999999888877666655444332222122222333332  223344556


Q ss_pred             HHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153        104 TLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus       104 ~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      .++.|.+|++.|                  ++..++......+|..++|.+.+++.
T Consensus       344 ~~~~~~~p~~~~------------------g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        344 KFLYDYFPLEVR------------------GLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             HHHHHhCcHHHH------------------hhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            778899999888                  99999998888999999999888775

>TIGR00897 2A0118 polyol permease family

Probab=98.97  E-value=3.3e-08  Score=86.97  Aligned_cols=136  Identities=16%  Similarity=0.212  Sum_probs=97.5

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHH-HHHHHHHHHHHHHHH-----hccHHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIML-ISFYGQGAISIAIVY-----NRSFPVYLILRTMQ   91 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~   91 (236)
                      +++++   +..+.+++.+...++..++.+..|+++||+|||+.+. .+.+...+.......     .++.+...+..++.
T Consensus       250 ~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (402)
T TIGR00897       250 AELGF---STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIAL  326 (402)
T ss_pred             HHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            44566   7777888888899999999999999999999888764 333333333332221     23555666677778


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHH
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVT  168 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~  168 (236)
                      |++.+...+ ....+.|..| ++|                  ++..++.+....+|..++|.+.+.+.   +|...+++.
T Consensus       327 G~~~~~~~~-~~~~~~~~~~-~~~------------------g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~  386 (402)
T TIGR00897       327 GIFLAGYVP-LAAVFPTLAP-KHK------------------GAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF  386 (402)
T ss_pred             HHHHHHHHH-HHHHHHhhCc-chh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            887766544 3455667654 578                  99999999999999999998887764   677888877


Q ss_pred             HhHHHHHH
Q psy12153        169 SLPFVGFS  176 (236)
Q Consensus       169 ~~~~~~~~  176 (236)
                      +++.++..
T Consensus       387 a~~~~i~~  394 (402)
T TIGR00897       387 AALYVVSA  394 (402)
T ss_pred             HHHHHHHH
Confidence            77663333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.97  E-value=3.6e-08  Score=88.17  Aligned_cols=136  Identities=17%  Similarity=0.089  Sum_probs=87.5

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh--CchHHHH-HHHHHHHHHHHHHHH--hccHHHHHHHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF--GRRVIML-ISFYGQGAISIAIVY--NRSFPVYLILRTMQGF   93 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~--Grr~~l~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~   93 (236)
                      +.++   +..+.++...++.++..++.+++|+++||+  |||.... ....+..++......  ..+.+...+..+..|.
T Consensus       283 ~~g~---s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~  359 (452)
T PRK11273        283 VKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGF  359 (452)
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence            3455   667788888888899999999999999999  5554332 222222232222222  2234334444444454


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHH-HHHHHHhcc---hhHHHHHHHH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVM-LSLVSYWFP---NWRDAELVTS  169 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~i~~~~~---~w~~~~~i~~  169 (236)
                      ...........+..|.+|++.|                  ++..++.+....+|..+ +|.+.+.+.   +|+..|.+.+
T Consensus       360 ~~~~~~~~~~~~~~~~~p~~~~------------------g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~  421 (452)
T PRK11273        360 LIYGPVMLIGLHALELAPKKAA------------------GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  421 (452)
T ss_pred             HHHhHHHHHHHHHHHHcChhhh------------------hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHH
Confidence            3323233334567799999889                  99999998877777654 677777664   7888888777


Q ss_pred             hHHHHH
Q psy12153        170 LPFVGF  175 (236)
Q Consensus       170 ~~~~~~  175 (236)
                      ..+++.
T Consensus       422 ~~~~~~  427 (452)
T PRK11273        422 GGSILA  427 (452)
T ss_pred             HHHHHH
Confidence            766333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.96  E-value=1.4e-08  Score=87.03  Aligned_cols=118  Identities=19%  Similarity=0.165  Sum_probs=104.0

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhhhh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRS-FPVYLILRTMQGFFVQGL   98 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~   98 (236)
                      ++.   +..+.++......++..++.++.+++.||+|||+.+..+..+.++........++ .+.+.+..++.|++.+..
T Consensus       242 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  318 (365)
T TIGR00900       242 LGR---GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPI  318 (365)
T ss_pred             hCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            455   7888899999999999999999999999999999998888777777777777664 777788889999998888


Q ss_pred             hHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153         99 QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus        99 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      .+....++.|..|+++|                  ++..+..+....+|..+++.+.+.+
T Consensus       319 ~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       319 NVPQGTLLQRRVPAELL------------------GRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             HHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999                  9999999999999999999887765

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.96  E-value=3.1e-08  Score=87.97  Aligned_cols=144  Identities=15%  Similarity=0.014  Sum_probs=85.3

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH--H--hccHHHHHHHHHHHHHh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV--Y--NRSFPVYLILRTMQGFF   94 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~g~~   94 (236)
                      ++++   +..+.+...++..++..++.++.|+++||+|||+.++++.++..+......  .  .++....+..-.+....
T Consensus       273 ~~g~---s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (432)
T PRK10406        273 TAGM---HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLI  349 (432)
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            3455   677778888888888888899999999999999988776654433332221  1  12222222222222222


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHH-HHHHHHHHHHhcc--h-hHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTV-GLVMLSLVSYWFP--N-WRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~i~~~~~--~-w~~~~~i~~~  170 (236)
                      .+...+....+.+|++|++.|                  +...++.+...++ .....|.+...+.  + |...+++.++
T Consensus       350 ~~~~~~~~~~~~~e~fp~~~r------------------~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~  411 (432)
T PRK10406        350 VSFYTSISGILKAEMFPAQVR------------------ALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTL  411 (432)
T ss_pred             HHHHHHHHHHHHHHHCCCCcc------------------chhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            333344566788899999888                  8888887654333 2334666555553  3 4445555555


Q ss_pred             HHHHHHHHHHhhcc
Q psy12153        171 PFVGFSLFYVWFIP  184 (236)
Q Consensus       171 ~~~~~~~~~~~~~p  184 (236)
                      .. ++..+..++++
T Consensus       412 ~~-~i~~~~~~~l~  424 (432)
T PRK10406        412 MA-VVAFLVSLMLH  424 (432)
T ss_pred             HH-HHHHHHHHHhh
Confidence            54 44444444443

>TIGR00895 2A0115 benzoate transport

Probab=98.95  E-value=1.2e-08  Score=88.46  Aligned_cols=114  Identities=26%  Similarity=0.353  Sum_probs=93.0

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV-YNRSFPVYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      +..+.++..+...++..++.++.++++||+|||+.+.... +..+...+.. ..++.+...+..++.|++.+...+....
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  361 (398)
T TIGR00895       283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYA  361 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778889999999999999999999999999995544443 3333333333 3556666777788889998888888999


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      ++.|.+|+++|                  +...++......+|..++|.+.+.+
T Consensus       362 ~~~~~~~~~~~------------------g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       362 LMALFYPTAIR------------------ATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHhhcCCHHHH------------------HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999                  9999999999999999999887754

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.95  E-value=3.3e-08  Score=89.52  Aligned_cols=146  Identities=16%  Similarity=0.120  Sum_probs=103.3

Q ss_pred             eeeeeecCcchhHHHHH-HHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH---HHh-ccHHHHHHHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVT-LYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI---VYN-RSFPVYLILRTMQGF   93 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~g~   93 (236)
                      ++|+   +..+.++... ...++.+++.+++|+++||+|||+.+.++.++.++.....   ... ++...+.+..++..+
T Consensus       252 ~~G~---s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~  328 (491)
T PRK11010        252 GVGF---DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENL  328 (491)
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            4566   8888898874 5668999999999999999999888777666555544322   222 344444444555555


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSL  170 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~  170 (236)
                      +.+...+...++..+..+++.+                  +...++.+....+|..+++.+.+.+.   ||+..|.+.++
T Consensus       329 ~~g~~~~~~~a~~~~l~~~~~~------------------~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~  390 (491)
T PRK11010        329 CGGMGTAAFVALLMTLCNKSFS------------------ATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVA  390 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCc------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            5555556667888899988888                  88888888888888887777766653   78888888887


Q ss_pred             HHHHHHHHHHhhcccc
Q psy12153        171 PFVGFSLFYVWFIPES  186 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet  186 (236)
                      +. +.+++....++++
T Consensus       391 ~~-l~~l~~~~~~~~~  405 (491)
T PRK11010        391 AA-VPGLLLLLVCRQT  405 (491)
T ss_pred             HH-HHHHHHHHHHHhc
Confidence            77 4444444444544

>PRK15075 citrate-proton symporter; Provisional

Probab=98.95  E-value=3.1e-08  Score=88.07  Aligned_cols=118  Identities=17%  Similarity=0.154  Sum_probs=80.1

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHH-H-H--HhccHHHHHHHHHHHHHhh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIA-I-V--YNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~g~~~   95 (236)
                      +++   +..+.++....+.++..++.+++|+++||+|||+.++++..+..+.... . .  ..++.........+.+++.
T Consensus       269 ~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (434)
T PRK15075        269 LHL---SAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLY  345 (434)
T ss_pred             cCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            455   7777888888888999999999999999999999888765544332221 1 1  1223333334445556666


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHH-HHHHHHHHHHHHHHHHhc
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVT-EICWTVGLVMLSLVSYWF  158 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~l~~~i~~~~  158 (236)
                      +...+....+..|.+|++.|                  +...++. +++..+++.++|.+.+.+
T Consensus       346 g~~~~~~~~~~~e~~p~~~r------------------g~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        346 GSYNGAMVVALTEVMPAEVR------------------TAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             HHHHhhHHHHHHHHCCCCcc------------------chheeHHHHHHHHHHhhhHHHHHHHH
Confidence            66666667788999999988                  8877774 334444456677766655

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.94  E-value=1.4e-08  Score=100.28  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=115.1

Q ss_pred             eeeeeecCcc-hhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         19 LWHLYHHECK-WNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        19 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      ++++   +.. ..+++.+...++.++++++.++++||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.+.
T Consensus       262 ~~g~---s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  338 (1146)
T PRK08633        262 VLGL---DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGL  338 (1146)
T ss_pred             HhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3555   667 889999999999999999999999999999998888888888888777777888888888889998888


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPFV  173 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~~  173 (236)
                      ..+...+++.+..|++.|                  +...++.+....+|.++++.++..+.    ++...+++.+.+.+
T Consensus       339 ~~~~~~~~~~~~~p~~~r------------------g~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        339 FIVPLNALIQFRAPEKEL------------------GKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             hhHHHHHHHhhcCCccch------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            888888999999999999                  99999999888888877776666553    34445555555443


Q ss_pred             HHHHHHHhhcccc
Q psy12153        174 GFSLFYVWFIPES  186 (236)
Q Consensus       174 ~~~~~~~~~~pet  186 (236)
                      +..++..+.+|++
T Consensus       401 ~~~~~~~~~~~~~  413 (1146)
T PRK08633        401 IGTLYTLLLLPDS  413 (1146)
T ss_pred             HHHHHHHHHhHHH
Confidence            3334444445554

>KOG0254|consensus

Probab=98.92  E-value=1.9e-08  Score=91.55  Aligned_cols=161  Identities=18%  Similarity=0.162  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhc
Q psy12153         31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELF  110 (236)
Q Consensus        31 ~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~  110 (236)
                      .+...+..+...++.+++..+.||+|||+.++.+.....++.++.+........... ....... ........++. .+
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~v~-~f  408 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGW-LAIVFLCLFIF-SF  408 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhH-HHHHHHHHHHH-HH
Confidence            556666777778888888999999999999999999999998877753211100000 0000000 00000001111 11


Q ss_pred             CccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcchh---HHHHHHHHhHHHHHHH-HHHhhcccc
Q psy12153        111 PTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNW---RDAELVTSLPFVGFSL-FYVWFIPES  186 (236)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~w---~~~~~i~~~~~~~~~~-~~~~~~pet  186 (236)
                        ..-+++.+|++.+|+||.+.|+.+.++......+.+.+..........+   ...|...+..+.+... ..++++|||
T Consensus       409 --~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  409 --AIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             --hcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence              1125666777888888888889999888777777666655544444332   4566666666545556 788899998


Q ss_pred             hhHHHhcCCHhHHHHH
Q psy12153        187 PLWKYTKNKIIDFEYL  202 (236)
Q Consensus       187 ~~~~~~~~~~~~~~~~  202 (236)
                            |++..++.+.
T Consensus       487 ------kg~sleei~~  496 (513)
T KOG0254|consen  487 ------KGLTLEEINE  496 (513)
T ss_pred             ------CCCcHHHHHH
Confidence                  6665554444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.92  E-value=8.6e-09  Score=93.76  Aligned_cols=133  Identities=19%  Similarity=0.149  Sum_probs=115.9

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL   98 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   98 (236)
                      +++.   +....|++.+.+.+|.++|++..+.+.+|+++++.+..+.++.++..+..++.++.+..++..++.|++....
T Consensus       248 ~l~~---~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~  324 (524)
T PF05977_consen  248 VLGG---GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIA  324 (524)
T ss_pred             HhCC---cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            4555   8889999999999999999999999999999999999999999999999999999998888889999998888


Q ss_pred             hHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         99 QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        99 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      .....+.+.+..|++.|                  |+.+++++.....+..+|..+.+.+.   +.+..+.+.++..
T Consensus       325 ~~~~~t~~Q~~~P~~~~------------------GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l  383 (524)
T PF05977_consen  325 NSSLNTLVQLSVPDWVR------------------GRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL  383 (524)
T ss_pred             HHHHHHHHHHhCCHHHH------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            88888999999999999                  99999999888888888888887775   4566666665544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09848 glucuronide transporter; Provisional

Probab=98.90  E-value=1.4e-07  Score=84.24  Aligned_cols=122  Identities=11%  Similarity=0.058  Sum_probs=89.7

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhhhhhhHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR--SFPVYLILRTMQGFFVQGLQNSTY  103 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~  103 (236)
                      +....++......++..++.++.++++||+|+|+++.++.++..++.+...+.+  +.+.+.+..++.|++.+...+...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~  341 (448)
T PRK09848        262 TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMW  341 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444667788999999999999999999999888888777666543  455566667788999888888889


Q ss_pred             HHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        104 TLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       104 ~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      ++.+|..+.++.           -.+.|..|...+..++...+|..+++.+.+.+
T Consensus       342 al~~~~~~~~~~-----------~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        342 ALEADTVEYGEY-----------LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             HHHHHhhhhhHH-----------hhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999875431           01112227888888888889998888776654

>PRK09669 putative symporter YagG; Provisional

Probab=98.88  E-value=3.3e-08  Score=88.16  Aligned_cols=148  Identities=13%  Similarity=0.083  Sum_probs=101.6

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhh----hCc-hHHHHHHHHHHHHHHHHHHHhcc------HHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADR----FGR-RVIMLISFYGQGAISIAIVYNRS------FPVYLI   86 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~   86 (236)
                      +++++   +....+.+.++..+...+..++.|+++||    +|| |+.++++.+..++...+....++      ...+++
T Consensus        38 ~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~  114 (444)
T PRK09669         38 DVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACV  114 (444)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            46788   99999999999999999999999999999    777 56666777777777665555443      233344


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhc-CccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHH----Hhc---
Q psy12153         87 LRTMQGFFVQGLQNSTYTLLIELF-PTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVS----YWF---  158 (236)
Q Consensus        87 ~~~l~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~----~~~---  158 (236)
                      ...+.+.+.........++.+|+. ++++|                  .+..+.......+|..+++.+.    ..+   
T Consensus       115 ~~~l~~~~~t~~~ip~~al~~~~t~~~~eR------------------~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~  176 (444)
T PRK09669        115 TYILLSLVYTAINVPYCAMPGAITNDPRER------------------HSLQSWRFALSFIGGLIVSVIALPLVDILGKG  176 (444)
T ss_pred             HHHHHHHHHHhhcchHHHhHHHhcCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            444555555555555678888987 45667                  7777777777777766665432    222   


Q ss_pred             ---chhHHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153        159 ---PNWRDAELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       159 ---~~w~~~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                         .+|+..+.+.+++..+..+..++..+|.
T Consensus       177 ~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        177 DEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence               1577777777777645555555666664

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.88  E-value=5.1e-08  Score=86.73  Aligned_cols=146  Identities=18%  Similarity=0.098  Sum_probs=93.2

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh--C-chHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF--G-RRVIMLISFYGQGAISIAIV--YNRSFPVYLILRTMQGF   93 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~--G-rr~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~   93 (236)
                      ++++   +..+.+...+.+.++..++.++.|+++||+  + ||.......+...+......  ...+........+..|+
T Consensus       273 ~~g~---s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  349 (434)
T PRK11663        273 TLGV---DLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGF  349 (434)
T ss_pred             ccCC---CHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            4455   778888899999999999999999999999  3 33332222111111111111  12233223233333444


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSL  170 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~  170 (236)
                      +.............|.+|++.|                  +...++.+....+|..++|.+.+.+.   +|+..|++.++
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~------------------g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~  411 (434)
T PRK11663        350 FVFGPQMLIGMAAAECSHKEAA------------------GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISI  411 (434)
T ss_pred             HHhhHHHHHHHHHHhcccHhhH------------------HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHH
Confidence            3322233334567888888888                  99999999999999999998887764   68888888887


Q ss_pred             HHHHHHHHHHhhccc
Q psy12153        171 PFVGFSLFYVWFIPE  185 (236)
Q Consensus       171 ~~~~~~~~~~~~~pe  185 (236)
                      +.++..+...+..++
T Consensus       412 ~~~~~~~~~~~~~~~  426 (434)
T PRK11663        412 AAGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            774444444444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.88  E-value=3e-07  Score=82.76  Aligned_cols=117  Identities=7%  Similarity=-0.092  Sum_probs=87.2

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhhhhhhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY-----NRSFPVYLILRTMQGFFVQGLQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~  100 (236)
                      +....++..++..++.+++.+++++++||+|+|+.++++..+..++.+....     .++.+.+++..++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4455666777777888999999999999999999998888776655554432     23455666667788888888888


Q ss_pred             HHHHHHHhhcCcc-----ccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        101 STYTLLIELFPTR-----WRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       101 ~~~~~~~e~~~~~-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      ...++++|..+.+     +|.                .|...+...+..-+|..+++.+.+.+
T Consensus       344 ~~~am~ad~id~~e~~tG~R~----------------~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRC----------------ESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccc----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999996632     331                16678888888888888887776654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.84  E-value=1.1e-07  Score=81.20  Aligned_cols=136  Identities=18%  Similarity=0.115  Sum_probs=119.2

Q ss_pred             CcceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy12153         14 GEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGF   93 (236)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   93 (236)
                      +++.+|+++   +.+..|+++++..+...+.++...+++.|+|.++.+.+++++.+++..+-... +.+.++.+..+.|.
T Consensus        36 ~~Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~  111 (395)
T COG2807          36 DEIRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGA  111 (395)
T ss_pred             HHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Confidence            467789999   99999999999999999999999999999999999999999999999988887 77788889999999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF----PNWRDAELVTS  169 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~----~~w~~~~~i~~  169 (236)
                      +.+......+..+-+-||++ -                  +.+++.+.....+|..+++.++..+    .+||....+-+
T Consensus       112 gIav~nVLLPslIK~~Fpk~-~------------------~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WA  172 (395)
T COG2807         112 GIAVINVLLPSLIKRDFPKR-V------------------GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWA  172 (395)
T ss_pred             hHHHHHHhhhHHHHhhcccc-h------------------hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHH
Confidence            99888888899999988754 4                  7889999999999888887666555    37998887777


Q ss_pred             hHH
Q psy12153        170 LPF  172 (236)
Q Consensus       170 ~~~  172 (236)
                      .++
T Consensus       173 l~a  175 (395)
T COG2807         173 LLA  175 (395)
T ss_pred             HHH
Confidence            777

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.84  E-value=1.6e-07  Score=82.06  Aligned_cols=132  Identities=10%  Similarity=0.003  Sum_probs=102.1

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      +|.|+   +..+.+...++..++..+..++.+++.||+|+|+.+..+.++.++........++.+.+++..++.|++.+.
T Consensus       233 ~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  309 (382)
T PRK11128        233 QAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV  309 (382)
T ss_pred             HHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            34455   777888888888888999999999999999999999999888888877777788888888889999999887


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHH-HHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTE-ICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      ..+....+..+. +++++                  ++..+... ....+|..+++.+++.+.   ++ ..++..+++.
T Consensus       310 ~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~  368 (382)
T PRK11128        310 CHLAAMRYIAAR-PGSEV------------------IRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVA  368 (382)
T ss_pred             HHHHHHHHHHHC-CHhhh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHH
Confidence            777777777776 45556                  66666664 556677788888888775   33 3444444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.83  E-value=1.8e-07  Score=82.22  Aligned_cols=119  Identities=11%  Similarity=-0.033  Sum_probs=91.7

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN-----RSFPVYLILRTMQGF   93 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~   93 (236)
                      ++++   +..+.++......++..++.++.++++||+|+|+.+.++.++..++.......     .+.+.+.+..++.|+
T Consensus       245 ~~g~---~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (406)
T PRK15402        245 GEQL---SSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF  321 (406)
T ss_pred             HhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            3555   77777888777888889999999999999999999988887776666655542     245556677788888


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      +.+...+......... ++++|                  ++..+..+....+|..+++.+.+.+.
T Consensus       322 g~~~~~~~~~~~~~~~-~~~~~------------------g~~~~~~~~~~~~~~~~g~~~~~~l~  368 (406)
T PRK15402        322 GIGLANAGLYRLTLFS-SDVSK------------------GTVSAAMGMLSMLIFTVGIELSKHAY  368 (406)
T ss_pred             HHHHHhhhHHHHHhhh-ccccc------------------cHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8877666555544433 34778                  99999999999999999999888874

>TIGR00788 fbt folate/biopterin transporter

Probab=98.82  E-value=6e-08  Score=87.29  Aligned_cols=149  Identities=16%  Similarity=-0.022  Sum_probs=103.8

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhC-----chHHHHHHHHHHH-HHHHHHHHhccHHHH-HHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFG-----RRVIMLISFYGQG-AISIAIVYNRSFPVY-LILRTM   90 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~l   90 (236)
                      +++++   +..+.+...++..+...+-.+ +|.++||++     ||+.++++.++.. +.....+..++.... .+..++
T Consensus        54 ~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l  129 (468)
T TIGR00788        54 DDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFL  129 (468)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            46788   999998999999999888655 999999998     7888888776663 433333333443333 346778


Q ss_pred             HHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHH
Q psy12153         91 QGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELV  167 (236)
Q Consensus        91 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i  167 (236)
                      .+++.+......-.+..|..+ +++               +.++...+.......+|.++++.+++.+.   +|+..|++
T Consensus       130 ~~~~~a~~dv~~da~~~e~~~-~~~---------------~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~  193 (468)
T TIGR00788       130 AALAKALYDVLVDSLYSERIR-ESP---------------SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLI  193 (468)
T ss_pred             HHHHHHHHHHhHHHHHhhhhh-cCC---------------CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH
Confidence            888887777888899999998 444               11122333333334577788777777653   79999988


Q ss_pred             HHhHHHHHHHHHHhhcccch
Q psy12153        168 TSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       168 ~~~~~~~~~~~~~~~~pet~  187 (236)
                      .+...++. .+..+++||.+
T Consensus       194 ~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       194 TAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             HHHHHHHH-HHHHHhccccc
Confidence            88887444 56667788863

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.81  E-value=6.3e-08  Score=86.19  Aligned_cols=143  Identities=15%  Similarity=0.068  Sum_probs=90.1

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHH---HHHHHHHH--hccHHHHHHHHHHHHHhhhhhhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQG---AISIAIVY--NRSFPVYLILRTMQGFFVQGLQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~  100 (236)
                      +..+.++....+.++..++.+.+|+++||+|+++....+.....   ++......  ..+.+......+..|.+..+...
T Consensus       285 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  364 (438)
T TIGR00712       285 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVM  364 (438)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHH
Confidence            77778888889999999999999999999964432222222211   11111111  12333333333444443222222


Q ss_pred             HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHH-HHHHHHHHHhcc---hhHHHHHHHHhHHHHHH
Q psy12153        101 STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVG-LVMLSLVSYWFP---NWRDAELVTSLPFVGFS  176 (236)
Q Consensus       101 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~  176 (236)
                      .......|.+|++.|                  +...++.+....+| ..++|.+.+.+.   +|...+++.....++..
T Consensus       365 ~~~~~~~~~~~~~~~------------------g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~  426 (438)
T TIGR00712       365 LIGLHALELAPKKAA------------------GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV  426 (438)
T ss_pred             HHHHHHHHhcChhhe------------------eeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHH
Confidence            223467789998889                  99999887776665 467777777663   67888887777665666


Q ss_pred             HHHHhhcccc
Q psy12153        177 LFYVWFIPES  186 (236)
Q Consensus       177 ~~~~~~~pet  186 (236)
                      +...+.+||.
T Consensus       427 ~~~~~~~~~~  436 (438)
T TIGR00712       427 ILLIVVMIGE  436 (438)
T ss_pred             HHHHHHHhhc
Confidence            6677777774

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.80  E-value=2.4e-07  Score=81.01  Aligned_cols=148  Identities=13%  Similarity=-0.040  Sum_probs=92.0

Q ss_pred             eeeeeeeecCcchhHHHH--HHHHHHHHhhhhhh-hhhhhhhCchHHHHHHHHHH-HHHHHHHH-H--hcc-HHHHHHHH
Q psy12153         17 VLLWHLYHHECKWNAAVV--TLYFLGVILGSIPA-GLLADRFGRRVIMLISFYGQ-GAISIAIV-Y--NRS-FPVYLILR   88 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~-g~l~Dr~Grr~~l~~~~~~~-~~~~~~~~-~--~~~-~~~~~~~~   88 (236)
                      .+|.++   +..+.|+..  .+..+...+.+++. ++.+||+|||+..++...+. .+...... .  ..+ ...++...
T Consensus        28 l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (390)
T TIGR02718        28 LREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLL  104 (390)
T ss_pred             HHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            356677   889999873  56677787788777 55899999999876554332 21222222 1  112 22223333


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHH
Q psy12153         89 TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAE  165 (236)
Q Consensus        89 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~  165 (236)
                      ++.++..+...+....+..|..+++++                  +...+....+..+|.++++....++.   +||..|
T Consensus       105 ~~~~~~~a~~d~~~d~~~~~~~~~~~~------------------~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f  166 (390)
T TIGR02718       105 ACASLASATQDIATDGMAAEHFNGRTL------------------AKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAF  166 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHhhh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            333344444444555566677766666                  77777777777888888887665542   899999


Q ss_pred             HHHHhHHHHHHHHHHhhccc
Q psy12153        166 LVTSLPFVGFSLFYVWFIPE  185 (236)
Q Consensus       166 ~i~~~~~~~~~~~~~~~~pe  185 (236)
                      ++.++..++..+...+..|+
T Consensus       167 ~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       167 LLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHHHHHHHHHHHHcCCC
Confidence            99988874444444344344

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.79  E-value=3.4e-07  Score=80.11  Aligned_cols=134  Identities=10%  Similarity=0.048  Sum_probs=95.5

Q ss_pred             eeeeeeecCcchhHHHHHHHHH-HHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFL-GVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY------NRSFPVYLILRTM   90 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l   90 (236)
                      .|.++   +.++.+++.....+ ...++.++.|++.||+|+|+.+.++..+..+.......      .++.........+
T Consensus       236 ~~~G~---s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (390)
T TIGR02718       236 VDAGW---PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAF  312 (390)
T ss_pred             HhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHH
Confidence            45566   88888988887764 66678899999999999999988876655333222221      1233333344455


Q ss_pred             HHHhhhhhhHHHHHHHHhhcCc-cccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHH
Q psy12153         91 QGFFVQGLQNSTYTLLIELFPT-RWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAEL  166 (236)
Q Consensus        91 ~g~~~~~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~  166 (236)
                      .+++.+...+.......+..++ +.+                  +...+..+....+|..++|.+++.+.   +++..|+
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~  374 (390)
T TIGR02718       313 GSLITGITSVAIYTAFMRFAGDGDQA------------------GTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFL  374 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccch------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            5566666767777777777665 677                  89999999999999999999988875   5677777


Q ss_pred             HHHhHH
Q psy12153        167 VTSLPF  172 (236)
Q Consensus       167 i~~~~~  172 (236)
                      +.+++.
T Consensus       375 ~~~~~~  380 (390)
T TIGR02718       375 SGTVLA  380 (390)
T ss_pred             HHHHHH
Confidence            766655

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2325|consensus

Probab=98.79  E-value=7.1e-08  Score=85.98  Aligned_cols=146  Identities=12%  Similarity=0.157  Sum_probs=115.8

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCc-hHHHHHHHHHHHHHHHHHH-H---hc-cHHHHHHHHHHHHHhhhhhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGR-RVIMLISFYGQGAISIAIV-Y---NR-SFPVYLILRTMQGFFVQGLQ   99 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Gr-r~~l~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~l~g~~~~~~~   99 (236)
                      +.+..|++.+...++.+++++.+|+-+.|.+. |+-++.+.++.++++++-. +   .+ ..+.++++|++.|+|.+.. 
T Consensus        69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-  147 (488)
T KOG2325|consen   69 TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-  147 (488)
T ss_pred             CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-
Confidence            56677999999999999999999999999984 5666778888888887663 2   23 5788899999999997654 


Q ss_pred             HHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-----h-----------hHH
Q psy12153        100 NSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-----N-----------WRD  163 (236)
Q Consensus       100 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-----~-----------w~~  163 (236)
                      ...-.|+++-...++|                  .++.+....+..+|..+||.+...+.     |           +..
T Consensus       148 a~lR~Y~a~~s~~~dR------------------~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTa  209 (488)
T KOG2325|consen  148 AVLRAYIADASTVEDR------------------PRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTA  209 (488)
T ss_pred             HHHHHHHHhccCccch------------------HHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecch
Confidence            5567899998888889                  88899888888899999988887763     1           234


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccchhHH
Q psy12153        164 AELVTSLPFVGFSLFYVWFIPESPLWK  190 (236)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~pet~~~~  190 (236)
                      +-++.++..++..++..+++.|.++..
T Consensus       210 p~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  210 PAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhheeecccCc
Confidence            556677777677777888888876543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.78  E-value=2.1e-07  Score=76.73  Aligned_cols=149  Identities=17%  Similarity=0.086  Sum_probs=108.2

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN-------RSFPVYLIL   87 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~   87 (236)
                      .+.+.+|+   ++++...+.+.-.+|..+| ++.|.+.||+|++.++++|.+...++.......       .+.+.+.+.
T Consensus        27 ~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~  102 (250)
T PF06813_consen   27 QLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLF  102 (250)
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHH
Confidence            45567888   9999999999999999875 888999999999999999999999988877642       355667666


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHH
Q psy12153         88 RTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAE  165 (236)
Q Consensus        88 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~  165 (236)
                      .++.|.+.+...........+.|| ++|                  |.+.++......+++.+-..+...+.  +-...+
T Consensus       103 ~~l~~~s~~~~~ta~lvt~~~NFP-~~R------------------G~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fl  163 (250)
T PF06813_consen  103 LFLGGNSSCWFNTASLVTCVRNFP-RSR------------------GTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFL  163 (250)
T ss_pred             HHHHcccHHHhhhHHHHHHHHhCc-ccc------------------CceehhhhHHHHhHHHHHHHHHHHHcCCChHHHH
Confidence            677666654444445555567777 468                  99999999998888887666655543  333344


Q ss_pred             HHHHhHHHHHHHHHHhhcccc
Q psy12153        166 LVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       166 ~i~~~~~~~~~~~~~~~~pet  186 (236)
                      .+.++.+.++.+...+++...
T Consensus       164 l~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  164 LFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             HHHHHHHHHHHHHHhhheecc
Confidence            455555545555555555443

>PRK09669 putative symporter YagG; Provisional

Probab=98.77  E-value=6.6e-07  Score=79.80  Aligned_cols=119  Identities=12%  Similarity=0.118  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy12153         29 WNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY--NRSFPVYLILRTMQGFFVQGLQNSTYTLL  106 (236)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  106 (236)
                      ..+.......+..+++.+++++++||+|+|+.+.++.++..+......+  .++.+.+.+..++.|++.+...+...+++
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666777888899999999999999998887766654443333  34566667777889999999999999999


Q ss_pred             HhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        107 IELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       107 ~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      +|..+.++..           .-.|..|...+..+....+|..+++.+++.+
T Consensus       345 ad~~d~~e~~-----------~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        345 SDVVDYEEKR-----------SGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             Hhhhhhhhhh-----------cCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998632210           0011116677888888888888888777665

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.77  E-value=9.3e-08  Score=83.17  Aligned_cols=141  Identities=20%  Similarity=0.190  Sum_probs=106.6

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhh--CchHHH-HHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhhhhhhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRF--GRRVIM-LISFYGQGAISIAIVYNR--SFPVYLILRTMQGFFVQGLQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~--Grr~~l-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~  100 (236)
                      +....++..+++-++.+.|++++|+++||+  |||... ++.+++..++......++  |+....+..++.|+..-+..-
T Consensus       286 s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm  365 (448)
T COG2271         286 SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM  365 (448)
T ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH
Confidence            888999999999999999999999999997  776544 455555555555544555  447777778888888777666


Q ss_pred             HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHH-HHHHHHHHHHhcc---hhHHHHHHHHhHHHHHH
Q psy12153        101 STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTV-GLVMLSLVSYWFP---NWRDAELVTSLPFVGFS  176 (236)
Q Consensus       101 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~  176 (236)
                      .......|+.|++--                  |.+.|+..++..+ |..++....+++.   +|...|++..+.+++..
T Consensus       366 LiGl~a~e~~pK~Aa------------------GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~  427 (448)
T COG2271         366 LIGLAAAEFVPKKAA------------------GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAI  427 (448)
T ss_pred             HHHHHHhccccHhhc------------------cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHH
Confidence            677788899998888                  9999999888888 7777776666662   89888888877775554


Q ss_pred             HHHHhhcc
Q psy12153        177 LFYVWFIP  184 (236)
Q Consensus       177 ~~~~~~~p  184 (236)
                      ++......
T Consensus       428 lll~~~~~  435 (448)
T COG2271         428 LLLLPVWN  435 (448)
T ss_pred             HHHHHHHh
Confidence            44444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.76  E-value=1.2e-07  Score=84.86  Aligned_cols=120  Identities=12%  Similarity=0.042  Sum_probs=100.1

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY----NRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~   95 (236)
                      +++   +..+.++......++..++.++.|++.||+|||+.+.++..+.+++......    ..+.+.+....++.|++.
T Consensus       286 ~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~  362 (485)
T TIGR00711       286 LGY---TALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGM  362 (485)
T ss_pred             cCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Confidence            455   8888899999999999999999999999999999999998888888777662    234555666678889988


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcch
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPN  160 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~  160 (236)
                      +...+.......+..|+++|                  +...++.+....+|..+++.+.+.+..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       363 GCFFMPLTTIALSGLPPHKI------------------ARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHhcCCHHHH------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777777777788888889                  999999999999999999888777643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10054 putative transporter; Provisional

Probab=98.76  E-value=2.2e-07  Score=81.74  Aligned_cols=128  Identities=13%  Similarity=-0.003  Sum_probs=95.2

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN-RSFPVYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      +....+++.....+......++.|.+.||+++|+.+..+..+..++....... ++.+.+.+...+.|++.+...+....
T Consensus       242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~  321 (395)
T PRK10054        242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYM  321 (395)
T ss_pred             HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            44555667777766667777888999999999999998887777777666553 46666677788888888777788888


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      .+.+..|++.|                  +...+..+ ...+|..++|.+++.+.   +....|++.+...
T Consensus       322 ~~~~~~p~~~~------------------~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~  373 (395)
T PRK10054        322 LIDHIAPPGMK------------------ASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAI  373 (395)
T ss_pred             HHHHhCCcccc------------------eehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHH
Confidence            99999999888                  77766554 45578888888888775   3445555554444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.75  E-value=3.4e-07  Score=79.98  Aligned_cols=133  Identities=14%  Similarity=0.075  Sum_probs=91.2

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhhh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY-NRSFPVYLILRTMQGFFVQGL   98 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~   98 (236)
                      +|.   +..+.++..+...++..++.++.+++.||+|+|+.+.++..+..++.++... .++.+...+..++.+.+....
T Consensus       230 ~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  306 (382)
T PRK10091        230 SGF---SETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFAL  306 (382)
T ss_pred             cCC---CHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence            455   8888999999999999999999999999999999998888877777655543 444455555555555554444


Q ss_pred             hHHHHH-HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHHH
Q psy12153         99 QNSTYT-LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPFV  173 (236)
Q Consensus        99 ~~~~~~-~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~~  173 (236)
                      .+.... ...+..+.+.+                  +..  ..+....+|..++|.+++.+.    +|+..+.+.++..+
T Consensus       307 ~~~~~~~~~~~~~~~~~~------------------~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~  366 (382)
T PRK10091        307 SAPLQILLLQNAKGGELL------------------GAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSF  366 (382)
T ss_pred             hHHHHHHHHHhCCcchHH------------------HHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHH
Confidence            433333 33343443333                  433  235567788888888887653    57888887776663


Q ss_pred             HH
Q psy12153        174 GF  175 (236)
Q Consensus       174 ~~  175 (236)
                      +.
T Consensus       367 ~~  368 (382)
T PRK10091        367 AA  368 (382)
T ss_pred             HH
Confidence            33

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.75  E-value=6.3e-07  Score=77.56  Aligned_cols=115  Identities=12%  Similarity=0.158  Sum_probs=86.0

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN-----RSFPVYLILRTMQGF   93 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~   93 (236)
                      +++.   +..+.+++.+...++..++.++.|++.||+|||+.+..+..+..++.......     ++.........+.|+
T Consensus       236 ~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  312 (385)
T TIGR00710       236 IMGV---SPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI  312 (385)
T ss_pred             HcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            4555   78888999999999999999999999999999999888877777666555442     223344555677788


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHH-HHHHHHHHHHH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICW-TVGLVMLSLVS  155 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~l~~~i~  155 (236)
                      +.+...+.......|..| ++|                  +...+..+... .+|.+.++.++
T Consensus       313 ~~~~~~~~~~~~~~~~~~-~~~------------------g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       313 GNSMISSIAMAYALEDFP-HVA------------------GTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHhccCc-ccc------------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888876 567                  78888766554 45666666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.73  E-value=3.2e-07  Score=80.18  Aligned_cols=118  Identities=16%  Similarity=-0.035  Sum_probs=78.9

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL   98 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   98 (236)
                      ++++   +..+.+...+...++..++.++.+++.||+|||+.+.++..+..++.......++.+..+..-.+.+.+.+..
T Consensus       233 ~~g~---~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  309 (392)
T PRK10473        233 QMGF---SRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG  309 (392)
T ss_pred             HcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555   7778888888999999999999999999999999999998888887777776655544444444444444333


Q ss_pred             hHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153         99 QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus        99 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      .+.  ....+..|.++|.                 +.+.+...+...+|..+++.+...+
T Consensus       310 ~~~--~~~~~~~~~~~~~-----------------g~~~~~~~~~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        310 FGV--AMSQALGPFSLRA-----------------GVASSTLGIAQVCGSSLWIWLAAVL  350 (392)
T ss_pred             hHH--HHHHHhccCcccc-----------------cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            332  3344555655551                 4455555555556666665555544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.72  E-value=3.6e-07  Score=79.66  Aligned_cols=141  Identities=14%  Similarity=0.135  Sum_probs=107.7

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR-SFPVYLILRTMQGFF   94 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~   94 (236)
                      ..+..++   +.+..+++..++.++..+|+..+|+++|| +.|+.+.....+..+......+.. +.+..++.-++.|+.
T Consensus       238 L~~v~g~---s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a  313 (394)
T COG2814         238 LESVAGF---SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFA  313 (394)
T ss_pred             HHHccCC---CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3445566   89999999999999999999999999999 999998888777777777666544 455555666667777


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLP  171 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~  171 (236)
                      ............++ ..++.+                  ....++....+++|..+|..+++.+.   ++....++.++.
T Consensus       314 ~~~~~~~~~~~~a~-~~p~~~------------------~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l  374 (394)
T COG2814         314 FSPALQGLQTRLAR-LAPDAA------------------DLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAAL  374 (394)
T ss_pred             hhhhhhHHHHHhcc-cCCCch------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            66666666666666 435667                  88899999999999999988888774   677778887777


Q ss_pred             HHHHHHHHH
Q psy12153        172 FVGFSLFYV  180 (236)
Q Consensus       172 ~~~~~~~~~  180 (236)
                      . +.++...
T Consensus       375 ~-~~a~~~~  382 (394)
T COG2814         375 L-LLALLLA  382 (394)
T ss_pred             H-HHHHHHH
Confidence            7 4433333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.71  E-value=3.5e-07  Score=80.40  Aligned_cols=143  Identities=13%  Similarity=0.168  Sum_probs=117.5

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      +....|...++..+.-++...+..++.+|+|.|+.++++..+..+=..+.++.++.+.+.+.+.+.|+..+.......-|
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY  336 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667889999999999999999999999999999999999999988899999999999999999999999888889999


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHH-HHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHh
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV-TEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVW  181 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~  181 (236)
                      +++.+|++..                  ++...+ .++...+|..+.+.+++.+.   |.+.+|++.+.+.+...++..+
T Consensus       337 I~~~fd~rls------------------At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  337 ITAHFDKRLS------------------ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             HHHHS-GGGH------------------HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHhHH------------------HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence            9999998876                  666665 46778888888888777774   6678888888887667777777


Q ss_pred             hcccc
Q psy12153        182 FIPES  186 (236)
Q Consensus       182 ~~pet  186 (236)
                      .+++.
T Consensus       399 ~l~~~  403 (412)
T PF01306_consen  399 TLKKD  403 (412)
T ss_dssp             HS--S
T ss_pred             eecCC
Confidence            77654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.71  E-value=3.1e-07  Score=83.13  Aligned_cols=116  Identities=9%  Similarity=0.025  Sum_probs=98.3

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhhhhhhHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN---RSFPVYLILRTMQGFFVQGLQNST  102 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~  102 (236)
                      +..+.+.......++..++.++.|++.||+|||+.+..+.++.+++.......   ++.+......++.|++.+...+..
T Consensus       293 s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~  372 (495)
T PRK14995        293 SPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLAS  372 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHH
Confidence            88899999999999999999999999999999999888888877776655432   345555667788899998888888


Q ss_pred             HHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153        103 YTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus       103 ~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      .....+..|++++                  +...+..+....+|..+|+.+.+.+.
T Consensus       373 ~~~~~~~~~~~~~------------------g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        373 TSAIMAAAPPEKA------------------AAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHhcCCHHhc------------------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999989                  99999999999999999988877764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.70  E-value=2.8e-07  Score=82.97  Aligned_cols=147  Identities=10%  Similarity=0.073  Sum_probs=99.8

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhh----hhCc-hHHHHHHHHHHHHHHHHHHHhcc------HHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLAD----RFGR-RVIMLISFYGQGAISIAIVYNRS------FPVYLIL   87 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~D----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~   87 (236)
                      ..++   +....|.+..+..+.-++..++.|.++|    |+|| |+.++++.+..+++..++...++      ...+++.
T Consensus        36 v~Gl---s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~  112 (473)
T PRK10429         36 VVGL---SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVT  112 (473)
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence            4567   8999999999999999999999999999    6698 66777788877777666654332      2233344


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhc-CccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHh----cc---
Q psy12153         88 RTMQGFFVQGLQNSTYTLLIELF-PTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYW----FP---  159 (236)
Q Consensus        88 ~~l~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~----~~---  159 (236)
                      ..+.+++.........++..|+. ++++|                  .+..+.-....++|..+.+.+...    +.   
T Consensus       113 ~~l~~~~~t~~~ip~~al~~~lt~~~~eR------------------~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~  174 (473)
T PRK10429        113 YILWGMTYTIMDIPFWSLVPTLTLDKRER------------------EQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGD  174 (473)
T ss_pred             HHHHHHHHHHHcchHHhhhHHhCCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            45556666666666778889998 57788                  777777666666665555443321    11   


Q ss_pred             ---hhHHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153        160 ---NWRDAELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       160 ---~w~~~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                         +|+....+.+++.++..++..+..+|.
T Consensus       175 ~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        175 RGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence               356566666666544455555556775

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.70  E-value=3e-08  Score=87.97  Aligned_cols=146  Identities=18%  Similarity=0.158  Sum_probs=109.1

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhh----hhCchH-HHHHHHHHHHHHHHHHHHh-c-c------HHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLAD----RFGRRV-IMLISFYGQGAISIAIVYN-R-S------FPVYL   85 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~D----r~Grr~-~l~~~~~~~~~~~~~~~~~-~-~------~~~~~   85 (236)
                      ..++   +....+.+..+..+..++..++.|.++|    |+|||+ .++++.+..+++..++... + +      ...+.
T Consensus        31 ~~gl---~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~  107 (428)
T PF13347_consen   31 VLGL---SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLF  107 (428)
T ss_pred             HcCC---CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHH
Confidence            3466   8888899999999999999999999999    899655 5567888888888877765 3 1      12234


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHhhcC-ccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc----c-
Q psy12153         86 ILRTMQGFFVQGLQNSTYTLLIELFP-TRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF----P-  159 (236)
Q Consensus        86 ~~~~l~g~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~----~-  159 (236)
                      +..++..++.........++..|+.+ +++|                  .+..+.-..+..+|.++.+.+.+.+    . 
T Consensus       108 ~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R------------------~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~  169 (428)
T PF13347_consen  108 VFYILFDIAYTFVQIPYNALIPELTPDPDER------------------TRLSSWRMIFSMIGSLLASFLAPILVSWFGG  169 (428)
T ss_pred             HHHHHHHHhhhhccCchhhcCccccccHhhh------------------hhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            45555566666666677888999987 4567                  8888888888888886555544433    2 


Q ss_pred             -----hhHHHHHHHHhHHHHHHHHHHhhccc
Q psy12153        160 -----NWRDAELVTSLPFVGFSLFYVWFIPE  185 (236)
Q Consensus       160 -----~w~~~~~i~~~~~~~~~~~~~~~~pe  185 (236)
                           +|++...+.+++.++..++..+..+|
T Consensus       170 ~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  170 GDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             CccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence                 58888888888886777777778888

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.70  E-value=2.6e-07  Score=91.57  Aligned_cols=145  Identities=12%  Similarity=0.025  Sum_probs=107.7

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh--------------------
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN--------------------   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------   78 (236)
                      .++.   +....+++.+.+.++.+++.++.|+++||.++++.+..+.++.++..+...+.                    
T Consensus       255 ~~g~---~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  331 (1140)
T PRK06814        255 TLGG---DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSK  331 (1140)
T ss_pred             HcCC---chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcc
Confidence            3555   78889999999999999999999999998887776666655555544444332                    


Q ss_pred             ccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153         79 RSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus        79 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      ++.+.+++..++.|++.+...+...+++.+..|++.|                  |+.++..+....+|..+++.+.+.+
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~------------------G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHR------------------ARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccc------------------eeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            5666677778888998888888889999999999999                  9999999999999888888877766


Q ss_pred             c----hhHHHHHHHHhHHHHHHHHHHhhcc
Q psy12153        159 P----NWRDAELVTSLPFVGFSLFYVWFIP  184 (236)
Q Consensus       159 ~----~w~~~~~i~~~~~~~~~~~~~~~~p  184 (236)
                      .    ++...+++.++..++..++.....|
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (1140)
T PRK06814        394 QALGFSIPWIILFIALANLIVAILILRLLP  423 (1140)
T ss_pred             HHhccCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence            3    3455555444443333333333333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.67  E-value=1.4e-06  Score=76.61  Aligned_cols=133  Identities=5%  Similarity=-0.057  Sum_probs=94.6

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      +++|+   +..+.+.....+.++..++.++.+++.||.+|+..+....+.......+....++.+.+.+..++.|++.+.
T Consensus       245 ~~~g~---s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~  321 (394)
T PRK10213        245 NLAGF---GVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFAL  321 (394)
T ss_pred             HhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            34566   778889999999999999999999999996544333333333333344444555666777778888988888


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      ..+....++.+..| +++                  ++..+.......+|..+|+.+++.+.   +++..++..++..
T Consensus       322 ~~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~  380 (394)
T PRK10213        322 VPVGWSTWITRSLA-DQA------------------EKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM  380 (394)
T ss_pred             hhHHHHHHHHHHCc-ccH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence            88877878888877 445                  55666667777888888888888774   5666666655544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.67  E-value=1.2e-06  Score=77.09  Aligned_cols=137  Identities=14%  Similarity=0.035  Sum_probs=84.4

Q ss_pred             eeeeeeecCcchhHHHHHHHH-HHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH---HHh-ccHHHHHHHHH---
Q psy12153         18 LLWHLYHHECKWNAAVVTLYF-LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI---VYN-RSFPVYLILRT---   89 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~---   89 (236)
                      +++|+   +..+.+++..... ++..++.++++++.||+|||+.+.++..+..+.....   +.. ++.+.+.+.-.   
T Consensus       238 ~~~G~---~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (402)
T PRK11902        238 RGAGF---SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIEN  314 (402)
T ss_pred             HhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            34666   7888888876554 4678999999999999999998877776655554333   233 34454444443   


Q ss_pred             -HHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHH
Q psy12153         90 -MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAE  165 (236)
Q Consensus        90 -l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~  165 (236)
                       ..|++.+...+....++.+.+|.+.+                  +...+    ...+|..+++.+++.+.   ||+..|
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~----~~~l~~~~~~~~~G~l~~~~G~~~~f  372 (402)
T PRK11902        315 LCGGMGTAAFVALLMALCNRSFSATQY------------------ALLSA----LASVGRVYVGPTSGYLVEAYGWPGFY  372 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHH------------------HHHHH----HHHHHHHHHHHHHHHHHHHhChHHHH
Confidence             34444555566666666666665544                  43333    33444443444444432   788888


Q ss_pred             HHHHhHHHHHHHHHH
Q psy12153        166 LVTSLPFVGFSLFYV  180 (236)
Q Consensus       166 ~i~~~~~~~~~~~~~  180 (236)
                      .+.++++ +..++..
T Consensus       373 ~~~~~~~-~~~~~~~  386 (402)
T PRK11902        373 LMTVVIA-LPGLALL  386 (402)
T ss_pred             HHHHHHH-HHHHHHH
Confidence            8877777 3333333

>TIGR01272 gluP glucose/galactose transporter

Probab=98.66  E-value=9e-07  Score=75.47  Aligned_cols=125  Identities=10%  Similarity=0.078  Sum_probs=94.5

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQ   99 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   99 (236)
                      +++   +..+.++..+.+..+.++|.+..+++.||+|+|+++.++..+..+...+....++... ...-.+.|++.+..+
T Consensus       173 ~g~---s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~  248 (310)
T TIGR01272       173 LGL---PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMF  248 (310)
T ss_pred             CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHH
Confidence            466   8889999999999999999999999999999999988888877777665555444332 345557889999999


Q ss_pred             HHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHH
Q psy12153        100 NSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVT  168 (236)
Q Consensus       100 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~  168 (236)
                      |...+...+..|++.                   +...++. ....+|..+.|.+.+.+.   +.+..+++.
T Consensus       249 P~~~s~a~~~~~~~~-------------------~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       249 PTIFSLALNALGRHT-------------------SQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             HHHHHHHHhhhhhhh-------------------hhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            999988888887653                   3334444 456688888888777663   456666533

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.66  E-value=2.6e-07  Score=79.63  Aligned_cols=105  Identities=13%  Similarity=0.048  Sum_probs=83.9

Q ss_pred             eeeeeecCcchhHHHHHHHH-HHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYF-LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN-----------RSFPVYLI   86 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~   86 (236)
                      ++++   +..+.+.+.++.. ++..++.+++|++.||+|||+.+.++.++.++......+.           ++.+.+..
T Consensus       238 ~~g~---~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (356)
T TIGR00901       238 DMGF---SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFL  314 (356)
T ss_pred             HcCC---CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHH
Confidence            3555   7788887777655 5778999999999999999999888888877766654432           34456667


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHH
Q psy12153         87 LRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICW  144 (236)
Q Consensus        87 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (236)
                      ..++.+++.+...+...+++.|.+|+++|                  ++..++.+...
T Consensus       315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~------------------g~~~g~~~~~~  354 (356)
T TIGR00901       315 TITLEAVTGGLGTVAFVAFLSKLSNPKFG------------------ATQMALLSSLS  354 (356)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCCcc------------------HHHHHHHHHHH
Confidence            77888999889999999999999999999                  88888877654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.66  E-value=6.5e-07  Score=78.69  Aligned_cols=119  Identities=10%  Similarity=-0.023  Sum_probs=92.6

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL   98 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   98 (236)
                      .+|.   +..+.++..+...++..++++..+++.||.++|+++..+. +.++........++.+...+..++.|++.+..
T Consensus       235 ~lg~---s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~  310 (393)
T PRK11195        235 ALGI---TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFF  310 (393)
T ss_pred             HcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence            3555   8888999999999999999999999999999988877775 33444444455566666666777888887777


Q ss_pred             hHHHHHHHHhhcCccc-cccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         99 QNSTYTLLIELFPTRW-RIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        99 ~~~~~~~~~e~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      .+...+.+.+..|++. +                  |+..+..+....+|..++..+...+.
T Consensus       311 ~~~~~~~~q~~~~~~~~~------------------g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        311 VVPMNALLQHRGHVLVGA------------------GHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             hhhHHHHHHhhCcccccc------------------hhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            7767777888766654 6                  88899999999999988888777663

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.65  E-value=1.7e-06  Score=74.89  Aligned_cols=118  Identities=13%  Similarity=0.081  Sum_probs=77.5

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH---Hh-ccHHHHHHHHHHHHHh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV---YN-RSFPVYLILRTMQGFF   94 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~g~~   94 (236)
                      ++++   +..+.++......++..++.++.+++.||+|||+.+.++..+..+......   .. .+.+...+...+.+.+
T Consensus       224 ~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T PRK11102        224 LNGV---SPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC  300 (377)
T ss_pred             HhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3455   788889999999999999999999999999999998888765544333222   11 2333333343344444


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHH-HHHHHHHHHHHHHHhc
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEI-CWTVGLVMLSLVSYWF  158 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~l~~~i~~~~  158 (236)
                      .+...+....++.|..| +.+                  +...+.... ...+|..+++.++...
T Consensus       301 ~~~~~~~~~~~~~~~~~-~~~------------------g~~~~~~~~~~~~~g~~~g~~~~~~~  346 (377)
T PRK11102        301 VSMISSNAMAVILDEFP-HMA------------------GTASSLAGTLRFGIGAIVGALLSLAP  346 (377)
T ss_pred             HHHhhHHHHHHHhcccc-ccc------------------hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44444455556667665 567                  777776543 3556777777665443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.64  E-value=1.7e-06  Score=70.88  Aligned_cols=127  Identities=28%  Similarity=0.404  Sum_probs=99.8

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRS--FPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      ...++..+.+.++..++.++.|.++||+|||+.++.+.....++.....+..+  .+.+.+.|...|++.+...+....+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            46789999999999999999999999999998888877665555566666655  7888899999999998888999999


Q ss_pred             HHhhcCc-cccccccchhhhhhccccccchhhHHHHHH-HHHHHHHHHHHHHHhcc-----hhHHHHHHHHhHH
Q psy12153        106 LIELFPT-RWRIGVATYTLLIELFPTRWRIGVAWVTEI-CWTVGLVMLSLVSYWFP-----NWRDAELVTSLPF  172 (236)
Q Consensus       106 ~~e~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~l~~~i~~~~~-----~w~~~~~i~~~~~  172 (236)
                      +.|..|. +.|                  +...+.... ...+|..+++.++..+.     +|+..+.+.....
T Consensus       119 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         119 LSEWFPEATER------------------GLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHhcCchhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999987 566                  777777666 57777777776655543     6887665555544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.63  E-value=3e-07  Score=81.35  Aligned_cols=128  Identities=10%  Similarity=-0.038  Sum_probs=82.7

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVI-MLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      +..+.+.......++..++.+.+|+++||++||+. .....++..++..+.....+.......-.+.+++.....+....
T Consensus       277 s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  356 (412)
T TIGR02332       277 SNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWT  356 (412)
T ss_pred             cHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHh
Confidence            56777888899999999999999999999997764 33333333333322222222222222222222222222333344


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhH
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLP  171 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~  171 (236)
                      ...|.+|++.|                  +.+.++.+....+|..++|.+.+.+.    +|++.+.+.++.
T Consensus       357 ~~~~~~~~~~~------------------~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       357 TPDQSISLQAR------------------AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hcccccchHHH------------------HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            45567777777                  99999999999999999998877663    488777765543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.63  E-value=1.1e-06  Score=77.44  Aligned_cols=116  Identities=10%  Similarity=-0.048  Sum_probs=90.7

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhh-hhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLAD-RFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~D-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      +..+.++..+...++...+..+.+++.| |++.++.+..+..+.+++....+..++.+.+.+...+.+++.+...+....
T Consensus       241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~  320 (400)
T PRK11646        241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARET  320 (400)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHH
Confidence            4566777777776666655555566655 577677777777777777777777777777777777788887777788889


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      ++.+..|+++|                  ++..+..+....+|..++|.+.+.+.
T Consensus       321 ~~~~~~p~~~~------------------g~~~g~~~~~~~~g~~ig~~l~G~l~  357 (400)
T PRK11646        321 LSASLADARAR------------------GSYMGFSRLGLALGGAIGYIGGGWLF  357 (400)
T ss_pred             HHHhcCCcccc------------------hhhhhHHHHHHHHHHHhcccchHHHH
Confidence            99999999999                  99999999999999999998888874

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.61  E-value=2.6e-06  Score=75.21  Aligned_cols=143  Identities=14%  Similarity=0.213  Sum_probs=107.9

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh-ccHHHHHH----HHHHHHHhhhhhhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN-RSFPVYLI----LRTMQGFFVQGLQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~l~g~~~~~~~~  100 (236)
                      +....+...++..+.-++.-...+++..|+|-|++++++.+..++=..+.+.. ++.+...+    ...+.|+..+..+.
T Consensus       241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~  320 (400)
T PF03825_consen  241 SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHA  320 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34455666667777778888889999999999999999999888877777766 45444333    34568999999999


Q ss_pred             HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHH-HHHHHHHHHHHHHHhcc---------hhHHHHHHHHh
Q psy12153        101 STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEI-CWTVGLVMLSLVSYWFP---------NWRDAELVTSL  170 (236)
Q Consensus       101 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~l~~~i~~~~~---------~w~~~~~i~~~  170 (236)
                      ....++.+..|++.|                  ++..++++. ...+|..+|..+++++.         .|...+.+.++
T Consensus       321 a~~~yi~~~~p~~~~------------------at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~  382 (400)
T PF03825_consen  321 ASVRYIDRIAPPELR------------------ATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAV  382 (400)
T ss_pred             HHHHHHHHhCCccch------------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence            999999999999999                  899998765 56789999998888874         24455666666


Q ss_pred             HHHHHHHHHHhhcccc
Q psy12153        171 PFVGFSLFYVWFIPES  186 (236)
Q Consensus       171 ~~~~~~~~~~~~~pet  186 (236)
                      +.++..++..++.+|+
T Consensus       383 ~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  383 MALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHhhccCC
Confidence            6655555555566654

>PRK10133 L-fucose transporter; Provisional

Probab=98.60  E-value=1.4e-06  Score=77.71  Aligned_cols=130  Identities=15%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL   98 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   98 (236)
                      ++|+   +..+.++....+.++..++.++.+++.||+|||+++..+.++..+...+..+.++.. .+..-.+.|++.+..
T Consensus       289 ~~g~---s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i  364 (438)
T PRK10133        289 IPGM---TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQ  364 (438)
T ss_pred             cCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHH
Confidence            4566   899999999999999999999999999999999999888777766666555555432 244567789999999


Q ss_pred             hHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---h-hHHHHHHHHhHH
Q psy12153         99 QNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---N-WRDAELVTSLPF  172 (236)
Q Consensus        99 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~-w~~~~~i~~~~~  172 (236)
                      +|.......+..+++ .                  +...++... ..+|..++|.+.+.+.   + -+..|++..+..
T Consensus       365 ~P~~~s~a~~~~~~~-~------------------~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~  422 (438)
T PRK10133        365 YPTIFSLGIKNLGQD-T------------------KYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_pred             HHHHHHHHHcccchh-h------------------ccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            999999999988764 3                  344444443 3355666666555542   3 456665544433

>KOG2504|consensus

Probab=98.60  E-value=4.2e-07  Score=82.52  Aligned_cols=145  Identities=18%  Similarity=0.230  Sum_probs=124.6

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhC--chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFG--RRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   95 (236)
                      ...++   +..+...+.++..+...++.+..|+++|+..  ++.+..++.++.++.....+..+++..++..-.+.|++.
T Consensus       326 ~~~g~---~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~  402 (509)
T KOG2504|consen  326 KSLGL---SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCV  402 (509)
T ss_pred             hhcCC---ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            35566   8899999999999999999999999999987  556677888888888888899999999999999999999


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLP  171 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~  171 (236)
                      |........++.|....++-                  ..+.++..+...++.+++|.+++.+.    +|...|+..++.
T Consensus       403 g~~~~l~~~i~~~~~g~~~l------------------~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~  464 (509)
T KOG2504|consen  403 GSFSSLTPVILVDLVGLEKL------------------SNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLC  464 (509)
T ss_pred             HHHHHHHHHHHHHHcChhhc------------------chHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChH
Confidence            88888888899999998888                  89999999999999999999998774    588888888887


Q ss_pred             HHHHHHHHHhhcc
Q psy12153        172 FVGFSLFYVWFIP  184 (236)
Q Consensus       172 ~~~~~~~~~~~~p  184 (236)
                      . ++....++..|
T Consensus       465 ~-~~s~~~~~~~~  476 (509)
T KOG2504|consen  465 F-LLSAVLLLILR  476 (509)
T ss_pred             H-HHHHHHHHHhH
Confidence            7 55555555555

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.59  E-value=4.1e-07  Score=77.53  Aligned_cols=114  Identities=21%  Similarity=0.225  Sum_probs=94.7

Q ss_pred             eeeeeeecC-cchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHH
Q psy12153         18 LLWHLYHHE-CKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY---NRSFPVYLILRTMQGF   93 (236)
Q Consensus        18 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~   93 (236)
                      +++++   + ..+.+...++..++..++.++.|+++||+|+|+...+......+.......   .++........++.|+
T Consensus       235 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  311 (352)
T PF07690_consen  235 EVLGF---SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGF  311 (352)
T ss_dssp             HHHHC---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHH
T ss_pred             hccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            45566   6 678888899999999999999999999999988877777666666665544   3345666667788899


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLS  152 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  152 (236)
                      +.+...+....++.|..|+++|                  ++..++.+....+|..++|
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~------------------g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  312 GFGIVFPILFSLIQELVPPEYR------------------GTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHCHHHHHHHHCCCHTCHH------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHHHHHCC
Confidence            9888899999999999999999                  9999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.58  E-value=3.9e-06  Score=74.79  Aligned_cols=121  Identities=12%  Similarity=0.150  Sum_probs=92.4

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhhhhhhHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR--SFPVYLILRTMQGFFVQGLQNSTY  103 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~  103 (236)
                      ++....+.......+.+++.+++..+++|+|+|+++.++.++.+++..+..+.+  +....++..++.+++.+...+..+
T Consensus       270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~w  349 (467)
T COG2211         270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPW  349 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccH
Confidence            444555666667777777799999999999999999999999999999888765  677777888999999999999999


Q ss_pred             HHHHhhcCccc-cccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        104 TLLIELFPTRW-RIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       104 ~~~~e~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      ++++|..+-.+ +.            -.|.-|...+......-+|..++..+.++.
T Consensus       350 am~~d~vDyge~~T------------G~R~eGi~~s~~tF~~K~g~ala~~~~g~~  393 (467)
T COG2211         350 AMVADTVDYGEWKT------------GVRREGIVYSGMTFFRKLGLALAGFIPGWI  393 (467)
T ss_pred             HHhcchhhHHHHHh------------CCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998875322 10            011117777777777777777777666554

>TIGR00896 CynX cyanate transporter

Probab=98.56  E-value=1.2e-06  Score=75.55  Aligned_cols=119  Identities=11%  Similarity=-0.030  Sum_probs=88.5

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF-GRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      +.+.   +..+.+...+...++.+++.+..|+++||+ +||+.+.++..+.+++.....+.++..... ...+.|++.+.
T Consensus       226 ~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~  301 (355)
T TIGR00896       226 SHGA---SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGG  301 (355)
T ss_pred             HcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhh
Confidence            4455   788889999999999999999999999999 567777777777777766666554433222 34677888888


Q ss_pred             hhHHHHHHHHhhcC-ccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         98 LQNSTYTLLIELFP-TRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        98 ~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      .++.....+.+..+ ++++                  +...++.+....+|..++|.+.+.+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~~~~gp~~~G~l~  346 (355)
T TIGR00896       302 AFPLALTLIGLRSRQAAQA------------------AALSAMAQSIGYLLAALGPLFVGVLH  346 (355)
T ss_pred             HhHHHHHHHHHhccCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877777665554 4455                  77777777777788888888777664

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.56  E-value=4.5e-07  Score=77.86  Aligned_cols=116  Identities=22%  Similarity=0.159  Sum_probs=81.1

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhC-chHHHH-HHHHH-HHHHHHHHHH--hccHHHHHHHHHHHHHhhhhhhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFG-RRVIML-ISFYG-QGAISIAIVY--NRSFPVYLILRTMQGFFVQGLQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~G-rr~~l~-~~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~  100 (236)
                      +..+.++..+...++..++.++.++++||.+ ||+..+ ..... ..+.......  ..+.....+..++.|+......+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  329 (379)
T TIGR00881       250 SKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQM  329 (379)
T ss_pred             CHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhH
Confidence            7788899999999999999999999999863 333222 22211 1222222222  22344444555666665555555


Q ss_pred             HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153        101 STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus       101 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      ....+..|..|++.|                  +...++.+....+|..++|.+.+.+.
T Consensus       330 ~~~~~~~~~~~~~~~------------------g~~~g~~~~~~~~g~~~~~~~~g~l~  370 (379)
T TIGR00881       330 LIGVIASELAPKKAA------------------GTAAGFVGFFAYLGGILAGLPLGYLA  370 (379)
T ss_pred             HHHHHHHHhcCcchh------------------HHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence            566788999999999                  99999999999999999998887764

>PRK11462 putative transporter; Provisional

Probab=98.56  E-value=8.5e-06  Score=73.26  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRS--FPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      ...+.+.+.+.++.+++.+++++++||+|+|+.+.++..+..+..++..+.++  ...+.+.-++.|++.+...+....+
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788888999999999999999999877655544443333333222  2234444566677766666666778


Q ss_pred             HHhhcCcc-----ccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        106 LIELFPTR-----WRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       106 ~~e~~~~~-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      ++|..+.+     +|..                |...+.......+|..+++.+.+.+
T Consensus       343 ~ad~~d~~e~~tG~r~~----------------g~~~a~~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLT----------------GISFAGTLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             HHHhHhhhHHhcCCCch----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877632     2311                4445555566666666666555543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.56  E-value=2.9e-06  Score=77.07  Aligned_cols=138  Identities=9%  Similarity=0.027  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHHHhhhhhh----hhhhhhhCchHHHHHHHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHhhh
Q psy12153         30 NAAVVTLYFLGVILGSIPA----GLLADRFGRRVIMLISFYGQGAISIAIVYNRS---------FPVYLILRTMQGFFVQ   96 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~----g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~g~~~~   96 (236)
                      .+++.++..+...+..++.    +++.+|++....+.++.++.+++........+         .+.++...++.|++..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4556666665555665555    56666666667888899999998888766543         4577888999999999


Q ss_pred             hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-------------hhHH
Q psy12153         97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-------------NWRD  163 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-------------~w~~  163 (236)
                      ...|....++.+..|++.|                  ++.++...+...+|..++..+.....             +..+
T Consensus       398 ~~~p~g~s~~~~~aP~~~r------------------g~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  459 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLM------------------GFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGR  459 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHH
Confidence            9999999999999999999                  99999999888889888877764221             2567


Q ss_pred             HHHHHHhHHHHHHHHHHhhccc
Q psy12153        164 AELVTSLPFVGFSLFYVWFIPE  185 (236)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~pe  185 (236)
                      .|...++..++.+++..+..|.
T Consensus       460 ~f~~~~~~~~~~a~~~~~~~~~  481 (500)
T PRK09584        460 VFLQIGIATAVIAVLMLLTAPK  481 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777664455555444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.54  E-value=1.4e-06  Score=77.36  Aligned_cols=120  Identities=16%  Similarity=0.153  Sum_probs=99.5

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR--SFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      ...+....+..++..++.+++++++||+|+|+++..+..+.+++..+..+.+  +.+.+++...+.|++.+.......++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            5667778889999999999999999999999999999999999998888765  88899999999999999999999999


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      ++|..+.++..           ...|..|...+...+...+|..+++.+.+.+
T Consensus       340 ~ad~id~~e~~-----------tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  340 LADVIDYDEWK-----------TGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             cccchhhHHHh-----------cCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            99999754320           0011128888888888888888888776655

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.54  E-value=2.7e-06  Score=74.24  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhCch---HHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         30 NAAVVTLYFLGVILGSIPAGLLADRFGRR---VIML-ISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr---~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      .+....+..+...++   .++++||..||   +... ...++.++.........+....++.-.+.+++....++..+.+
T Consensus       228 ~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  304 (368)
T TIGR00903       228 AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDW  304 (368)
T ss_pred             HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            344444444444444   57888887653   3322 2333334444444444444444444455666666666777889


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHhHHHHHHHHHHhhcc
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-NWRDAELVTSLPFVGFSLFYVWFIP  184 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-~w~~~~~i~~~~~~~~~~~~~~~~p  184 (236)
                      .+|.+|++.|                  ++..++.+....+|+.++|.+.+.+. +-+..|.+.+++.++..+.. +.++
T Consensus       305 ~~~~~p~~~r------------------gt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~-~~~~  365 (368)
T TIGR00903       305 IGKFCDKELH------------------GKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIA-LLLP  365 (368)
T ss_pred             HHHhcchhhc------------------CcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HhCC
Confidence            9999999999                  99999999999999988888776554 66677777777764443333 3434


Q ss_pred             c
Q psy12153        185 E  185 (236)
Q Consensus       185 e  185 (236)
                      +
T Consensus       366 ~  366 (368)
T TIGR00903       366 N  366 (368)
T ss_pred             C
Confidence            4

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2816|consensus

Probab=98.52  E-value=1e-06  Score=78.99  Aligned_cols=130  Identities=18%  Similarity=0.298  Sum_probs=102.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHhhcCcc
Q psy12153         36 LYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF--VQGLQNSTYTLLIELFPTR  113 (236)
Q Consensus        36 ~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~e~~~~~  113 (236)
                      ...+...+.++..|.++||+|||..+.+......+......+.. +|.++    +.++.  .+...+...++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            44667788899999999999999999999999888888777655 33222    33332  3355677789999999999


Q ss_pred             ccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHhhcccchh
Q psy12153        114 WRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~~~pet~~  188 (236)
                      +|                  ....++....+..+..++|.+++...   +.-.+|.+..+..++..+...+++||+..
T Consensus       145 ~R------------------~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  145 ER------------------SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HH------------------HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            99                  89999999999999999998888774   45567777777776677778888999853

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.52  E-value=1.5e-06  Score=77.80  Aligned_cols=143  Identities=19%  Similarity=0.194  Sum_probs=88.4

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHH--------HHHHHHH--HHHHHHHHHH-hccHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVI--------MLISFYG--QGAISIAIVY-NRSFPVYLIL   87 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~--------l~~~~~~--~~~~~~~~~~-~~~~~~~~~~   87 (236)
                      +++.   +..+.++..++..++..++.++.|+++||+++|+.        +..+...  ..+..+.... ..+....++.
T Consensus       291 ~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (465)
T TIGR00894       291 VLRV---SGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIII  367 (465)
T ss_pred             HhCc---ChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            3455   78888999999999999999999999999865421        1111111  1111111222 2233333333


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc------hh
Q psy12153         88 RTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP------NW  161 (236)
Q Consensus        88 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~------~w  161 (236)
                      -.+.+.+.+...+.......|..|. .+                  |...++.+....+|..++|.+.+.+.      +|
T Consensus       368 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~------------------g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~  428 (465)
T TIGR00894       368 LTLANAVSSGPLAGVLINSLDLAPR-FL------------------GFIKGITGLPGFIGGLIASTLAGNILSQDSKNVW  428 (465)
T ss_pred             HHHHHHHhhhhhhhhhhchhhcChh-HH------------------HHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHH
Confidence            4444444444444444445566554 56                  99999999999999999998888753      37


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhcc
Q psy12153        162 RDAELVTSLPFVGFSLFYVWFIP  184 (236)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~~p  184 (236)
                      +..|.+.++.. ++..+...+.+
T Consensus       429 ~~~f~~~~~~~-~i~~i~~~~~~  450 (465)
T TIGR00894       429 LIVFLIMAFVN-ILCVIFYLIFG  450 (465)
T ss_pred             HHHHHHHHHHH-HHHHHHeeeee
Confidence            78888877766 34333344443

>PRK11462 putative transporter; Provisional

Probab=98.51  E-value=4.7e-06  Score=74.92  Aligned_cols=148  Identities=14%  Similarity=0.075  Sum_probs=100.9

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhh----hCch-HHHHHHHHHHHHHHHHHHHhcc------HHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADR----FGRR-VIMLISFYGQGAISIAIVYNRS------FPVYLIL   87 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~   87 (236)
                      ..++   +....|.+..+.-+.-++.-++.|.++||    +||| +-++++.+..+++..++...++      ...+.+.
T Consensus        39 ~~Gl---~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~  115 (460)
T PRK11462         39 IFGI---PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAIT  115 (460)
T ss_pred             hhCC---CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence            4566   88888999999999999999999999996    6875 5556677777777766655442      2223334


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhcC-ccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc----c---
Q psy12153         88 RTMQGFFVQGLQNSTYTLLIELFP-TRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF----P---  159 (236)
Q Consensus        88 ~~l~g~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~----~---  159 (236)
                      -.+..++.........++..|+.+ +++|                  .+..+.-..+..+|..+++.+...+    .   
T Consensus       116 ~~~~~~~~t~~~ipy~al~~~lt~d~~eR------------------t~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~  177 (460)
T PRK11462        116 YTLLTLLYTVVNIPYCALGGVITNDPTQR------------------ISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDN  177 (460)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhcCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            444566665666666788888876 6667                  8888888888888877766553321    1   


Q ss_pred             ---hhHHHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        160 ---NWRDAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       160 ---~w~~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                         +|+....+.+++.++..++.++..+|.+
T Consensus       178 ~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~  208 (460)
T PRK11462        178 KPLGFQGGIAVLSVVAFMMLAFCFFTTKERV  208 (460)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcceecc
Confidence               4666666666665444445555556643

>KOG0252|consensus

Probab=98.51  E-value=7.6e-08  Score=84.47  Aligned_cols=133  Identities=16%  Similarity=0.175  Sum_probs=94.7

Q ss_pred             HHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCcccccccc
Q psy12153         40 GVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVA  119 (236)
Q Consensus        40 ~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~  119 (236)
                      ++..|..+...++|++|||++.+.+.++..+..+..+...|...-..+++       ..+. ..-..++.= ++    +.
T Consensus       360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~-------v~y~-l~~ff~NFG-Pn----~t  426 (538)
T KOG0252|consen  360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFV-------VLYS-LTFFFGNFG-PN----AT  426 (538)
T ss_pred             ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCcee-------ehHH-HHHHHHhcC-CC----ce
Confidence            33446666778999999999999999999998888887655311101100       1111 111222222 22    23


Q ss_pred             chhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--------hhHHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153        120 TYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--------NWRDAELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--------~w~~~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                      +.++.+|+||+|.|+.+.++..+..-+|.+++.....+..        +.+..+++.+.+. +...+..+++|||
T Consensus       427 tfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~-~~gi~~T~l~pEt  500 (538)
T KOG0252|consen  427 TFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCM-LLGILFTLLIPET  500 (538)
T ss_pred             eEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHH-HHhHheeEEeecc
Confidence            5677789999999999999999999999999987766653        4588999999988 7888888899998

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.49  E-value=7.9e-07  Score=77.34  Aligned_cols=139  Identities=19%  Similarity=0.140  Sum_probs=99.9

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc-------cHHHHHHHHH
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR-------SFPVYLILRT   89 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~   89 (236)
                      +++|++   +..+.+.....+.+...+..+.+|+++||+|.++++.+...+.+++..+.....       +.....+..+
T Consensus       246 ~~~fg~---~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  322 (417)
T COG2223         246 VTQFGL---SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFL  322 (417)
T ss_pred             HHhcCC---ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHH
Confidence            467888   899999999999999999999999999999999999988888888888777643       3333333333


Q ss_pred             HHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHH
Q psy12153         90 MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAE  165 (236)
Q Consensus        90 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~  165 (236)
                      ..+++.|......+.++...+++ +-                  |.+.++.....++|+...|...+...    .+...|
T Consensus       323 ~l~~~~G~GnGsvfk~Ip~if~~-~~------------------G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f  383 (417)
T COG2223         323 ALFVFAGLGNGSVFKMIPVIFPK-ET------------------GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAF  383 (417)
T ss_pred             HHHHHhccCcchheeechHHHHh-hh------------------hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHH
Confidence            33333333334444555555543 34                  78899999999999887777665543    477778


Q ss_pred             HHHHhHHHHHHH
Q psy12153        166 LVTSLPFVGFSL  177 (236)
Q Consensus       166 ~i~~~~~~~~~~  177 (236)
                      ++.....++..+
T Consensus       384 ~~~~~~~~~a~v  395 (417)
T COG2223         384 MLLLAFYLVALV  395 (417)
T ss_pred             HHHHHHHHHHHH
Confidence            777776634433

>TIGR00788 fbt folate/biopterin transporter

Probab=98.48  E-value=1.6e-06  Score=78.04  Aligned_cols=116  Identities=12%  Similarity=-0.000  Sum_probs=96.3

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY----------NRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~g~~~   95 (236)
                      +..+.|.......++.+++....+.+.+|++.|+++.++.++.+++......          .++.+.......+.+++.
T Consensus       286 s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~  365 (468)
T TIGR00788       286 GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLA  365 (468)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHH
Confidence            8999999999999999999999999999999999999999888887755431          133334445567778887


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      +..+.....++.+..|++.+                  +...++.+...++|..+++.+++.+.
T Consensus       366 g~~~~~~~~~~~~~~p~~~e------------------gt~~al~~s~~~lg~~v~~~~gg~l~  411 (468)
T TIGR00788       366 QLKFMPFLVLLARLCPSGCE------------------SSVFALLASILHLGSSVSGFLGVLLM  411 (468)
T ss_pred             HHHHccHHHHHHHhCCCCce------------------ehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777789999999999999                  99999999989999999988777763

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.44  E-value=5.6e-06  Score=74.19  Aligned_cols=148  Identities=11%  Similarity=-0.033  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH-h-----ccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12153         34 VTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY-N-----RSFPVYLILRTMQGFFVQGLQNSTYTLLI  107 (236)
Q Consensus        34 ~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  107 (236)
                      ..+..+...+..+++|+++||+|+|++++++.++..+....... .     .+.+...+..+...++.|......+.++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            34455667888899999999999999999888777766643322 1     23444444444444445555555666666


Q ss_pred             hhcCc-cccccc--c-chhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHHHHHHHHH
Q psy12153        108 ELFPT-RWRIGV--A-TYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPFVGFSLFY  179 (236)
Q Consensus       108 e~~~~-~~r~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~~~~~~~~  179 (236)
                      ..+|+ +.|...  . ...... --..+.-|.+.++......+|+.+.|.+.+...    ++...|+...+..++...+.
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  450 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQ-REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLT  450 (462)
T ss_pred             HHHhhhhhhcccccccchhHHh-hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            66663 111000  0 000000 000001167788888888888888886654442    46666666666554444444


Q ss_pred             Hhh
Q psy12153        180 VWF  182 (236)
Q Consensus       180 ~~~  182 (236)
                      +..
T Consensus       451 w~~  453 (462)
T PRK15034        451 WLV  453 (462)
T ss_pred             HHH
Confidence            444

>KOG4686|consensus

Probab=98.43  E-value=1.6e-06  Score=72.22  Aligned_cols=120  Identities=13%  Similarity=0.106  Sum_probs=94.4

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHhh
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISI-AIVYNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~   95 (236)
                      ++.|++   |....+.+.+.......+.+++.|.++||+||+...+.+..+..+..- ...+  +.+.-.....+.|+..
T Consensus       292 ~~rfGl---S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsy  366 (459)
T KOG4686|consen  292 QKRFGL---SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSY  366 (459)
T ss_pred             HHhhCC---ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhH
Confidence            567888   888888888888888899999999999999999877665444333222 2222  2333445567778877


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      +......+..++.+.|+++-                  |++.+..+...++|..+.|++++++.
T Consensus       367 sllAcslWP~va~~vpE~qL------------------GTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  367 SLLACSLWPCVASLVPEEQL------------------GTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             HHHHHHHhhhhhhhCCHHHh------------------cchHHHHHHHHhhhhhHHhhhhheee
Confidence            66666678889999999988                  99999999999999999999999985

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.43  E-value=2e-09  Score=95.78  Aligned_cols=134  Identities=22%  Similarity=0.275  Sum_probs=84.2

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH--H--hccH-----HHHHHHHHHHHHhhh-hhhHHHHH
Q psy12153         35 TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV--Y--NRSF-----PVYLILRTMQGFFVQ-GLQNSTYT  104 (236)
Q Consensus        35 ~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~-----~~~~~~~~l~g~~~~-~~~~~~~~  104 (236)
                      ....+...++.+.+..+.||+|||++++.+..+.++++...+  .  .++.     ...++.-.+.....+ +..+..+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~  372 (451)
T PF00083_consen  293 LILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWI  372 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence            344455667777888999999999999999888887777664  1  1111     111111111111111 22333344


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcchh---HHHHHHHHhHHHHHHHHHHh
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNW---RDAELVTSLPFVGFSLFYVW  181 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~w---~~~~~i~~~~~~~~~~~~~~  181 (236)
                      +..|.+|++.|                  ....++......++..+++.+.+.+.+.   ...+.+.+.+.++..++.++
T Consensus       373 ~~~ElfPt~~R------------------~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  373 YTAELFPTKVR------------------STGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             ccccccccccc------------------ccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence            55555555555                  8999988888888888887776665421   34556666666577778889


Q ss_pred             hcccc
Q psy12153        182 FIPES  186 (236)
Q Consensus       182 ~~pet  186 (236)
                      ++|||
T Consensus       435 ~lpET  439 (451)
T PF00083_consen  435 FLPET  439 (451)
T ss_pred             EEeeC
Confidence            99999

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.43  E-value=7.6e-06  Score=72.28  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=74.7

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhC-chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFG-RRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQ   96 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   96 (236)
                      ++.++   +..+.|.+.++..+..+++++++|.++||.+ +|+.+.+..++.++........++++.+++...+..+...
T Consensus        30 ~~~G~---s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~  106 (400)
T PF03825_consen   30 ESRGF---SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFS  106 (400)
T ss_pred             HhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence            34455   8999999999999999999999999999985 6777777777777777777778888888877777777777


Q ss_pred             hhhHHHHHHHHhhcCc
Q psy12153         97 GLQNSTYTLLIELFPT  112 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~  112 (236)
                      ...|...++..+....
T Consensus       107 p~~pl~dsi~~~~~~~  122 (400)
T PF03825_consen  107 PTMPLSDSIALSYLGD  122 (400)
T ss_pred             cHHHHHHHHHHHHccc
Confidence            7777777777777653

>PRK11043 putative transporter; Provisional

Probab=98.40  E-value=2.5e-05  Score=68.44  Aligned_cols=120  Identities=11%  Similarity=-0.052  Sum_probs=85.3

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH---H--hccHHHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV---Y--NRSFPVYLILRTMQG   92 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~l~g   92 (236)
                      +++++   +..+.++......++..++.+..+++.||+|+|+.+....++.++......   .  .++....++...+.|
T Consensus       231 ~~~g~---s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (401)
T PRK11043        231 EQMGY---SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMA  307 (401)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            34455   777888888888888899999999999999999876655554444433222   1  234444555566778


Q ss_pred             HhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        93 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      ++.+..++.......+..| ++|                  ++..++.+.....+...++.+.+.+.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~-~~~------------------g~~~g~~~~~~~~~~~~~~~~~g~l~  355 (401)
T PRK11043        308 AANGAIYPIVVAQALRPFP-QAT------------------GKAAALQNTLQLGLCFLASLLVSALI  355 (401)
T ss_pred             HHHHHHHHHHHHHHhhhCc-ccC------------------hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            8888888877777777765 468                  89999988877777777777766654

>PRK09848 glucuronide transporter; Provisional

Probab=98.40  E-value=8.9e-06  Score=72.58  Aligned_cols=95  Identities=12%  Similarity=0.010  Sum_probs=62.4

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh----CchHHH-HHHHHHHHHHHHHHHHhc-----c--HHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF----GRRVIM-LISFYGQGAISIAIVYNR-----S--FPVYL   85 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~----Grr~~l-~~~~~~~~~~~~~~~~~~-----~--~~~~~   85 (236)
                      +.+++   +..+.|.+.++..+...+..++.|+++||.    |||+.. +++.+...+...+....+     +  ....+
T Consensus        37 ~~~gl---~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (448)
T PRK09848         37 DVAGV---GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAY  113 (448)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHH
Confidence            34577   899999999999999999999999999996    766644 555554544444432211     1  12233


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHhhcCc-ccc
Q psy12153         86 ILRTMQGFFVQGLQNSTYTLLIELFPT-RWR  115 (236)
Q Consensus        86 ~~~~l~g~~~~~~~~~~~~~~~e~~~~-~~r  115 (236)
                      +...+.+++.+...+...++..+.... ++|
T Consensus       114 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r  144 (448)
T PRK09848        114 LTYMGLGLCYSLVNIPYGSLATAMTQQPQSR  144 (448)
T ss_pred             HHHHHHHHHHHHhcccHhhhhhhhcCCHHHH
Confidence            344556666666665566666666644 556

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.36  E-value=2.2e-05  Score=73.41  Aligned_cols=132  Identities=10%  Similarity=0.022  Sum_probs=101.4

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRF-GRRVIMLISFYGQGAISIAIVYNRS--------FPVYLILRTMQGFFVQ   96 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~   96 (236)
                      +......+...+....-+..+++|+++|++ ||+++++++.++..++..+..+...        ....+++-.+..+|.|
T Consensus        21 ~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~G  100 (654)
T TIGR00926        21 SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTG  100 (654)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhcc
Confidence            677777777777777788899999999965 9999999999998888887776321        1234556667778888


Q ss_pred             hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----------hhHHHHH
Q psy12153         97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----------NWRDAEL  166 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----------~w~~~~~  166 (236)
                      +.-+...+...|.++++++               +.|.....++..+.++|+++++.+..++.          +|...|.
T Consensus       101 giKp~vsaf~gdqf~~~~~---------------~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~  165 (654)
T TIGR00926       101 GIKPCVSAFGGDQFEERQL---------------SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG  165 (654)
T ss_pred             ccccCchhhhHhhcCccch---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence            8888889999999876433               11267788888889999999988877764          3777777


Q ss_pred             HHHhHH
Q psy12153        167 VTSLPF  172 (236)
Q Consensus       167 i~~~~~  172 (236)
                      +.++..
T Consensus       166 i~~i~m  171 (654)
T TIGR00926       166 VPAILM  171 (654)
T ss_pred             HHHHHH
Confidence            777766

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.36  E-value=1.8e-05  Score=71.52  Aligned_cols=137  Identities=10%  Similarity=0.001  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHhhhhhhhh----hhhh-hCchHHH--HHHHHHHHHHHHHHHH---------hccHHHHHHHHHHHHH
Q psy12153         30 NAAVVTLYFLGVILGSIPAGL----LADR-FGRRVIM--LISFYGQGAISIAIVY---------NRSFPVYLILRTMQGF   93 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~----l~Dr-~Grr~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~   93 (236)
                      .+++.++..+..++.+++..+    +.+| .+++...  .+|.++.+++....++         ..|.+.+++..++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            567777777777777776554    4443 2333333  6778887777776664         4588889999999999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSL  170 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~  170 (236)
                      +.....|....++.+..|++.|                  +...++..+...+|..+++.+.....   +|...|...++
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~------------------g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~  455 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLM------------------GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGL  455 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence            9999999999999999999999                  99999999999999999988877542   57777777777


Q ss_pred             HHHHHHHHHHhhcc
Q psy12153        171 PFVGFSLFYVWFIP  184 (236)
Q Consensus       171 ~~~~~~~~~~~~~p  184 (236)
                      ..++..++.++..|
T Consensus       456 ~~~~~~~~~~~~~~  469 (475)
T TIGR00924       456 VTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66555555555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.34  E-value=1.6e-05  Score=72.13  Aligned_cols=137  Identities=9%  Similarity=0.037  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhCchHH-------HHHHHHHHHHHHHHHH-----H-----hccHHHHHHHHHHHH
Q psy12153         30 NAAVVTLYFLGVILGSIPAGLLADRFGRRVI-------MLISFYGQGAISIAIV-----Y-----NRSFPVYLILRTMQG   92 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~-------l~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~l~g   92 (236)
                      ..+++++..+..++.+++.+++.||++||+.       +.+|.++.+++.....     .     ..+.+.++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3556666667777888889999999998863       6667777666654321     1     124566777888999


Q ss_pred             HhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-------------
Q psy12153         93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-------------  159 (236)
Q Consensus        93 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-------------  159 (236)
                      ++.+...+....++.+..|++.+                  +.++++..+...+|+.++..++....             
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~------------------g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~  452 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLM------------------GFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLP  452 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhh
Confidence            99999999999999999999999                  99999999999999999988875441             


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHhhcc
Q psy12153        160 NWRDAELVTSLPFVGFSLFYVWFIP  184 (236)
Q Consensus       160 ~w~~~~~i~~~~~~~~~~~~~~~~p  184 (236)
                      .+.+.|...++..++.+++.++..|
T Consensus       453 ~~~~~f~~~~~~~~~~~v~~~~~~~  477 (489)
T PRK10207        453 VYTNVFGKIGLVTLGVAVVMALMVP  477 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2456677667666555555544443

>KOG0255|consensus

Probab=98.33  E-value=3.1e-05  Score=70.53  Aligned_cols=136  Identities=20%  Similarity=0.206  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHH---HHHHHHHHHHhhhhhhHHHHHHHHhhc
Q psy12153         34 VTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPV---YLILRTMQGFFVQGLQNSTYTLLIELF  110 (236)
Q Consensus        34 ~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~g~~~~~~~~~~~~~~~e~~  110 (236)
                      ..........+....+.+.|++|||.....+.++..++++..++......   ..+...+..++.+..+...+.+.+|++
T Consensus       356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  435 (521)
T KOG0255|consen  356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI  435 (521)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33344445555566678999999999999999999999999888665433   444455555666666666788888888


Q ss_pred             CccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcchh-HH-HHHHHHhHHHHHHHHHHhhcccch
Q psy12153        111 PTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNW-RD-AELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~w-~~-~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                      |+..|                  ..+.+.......+|.+++|.+......+ .. .+.+.+....+.+++..+++|||.
T Consensus       436 pt~~r------------------~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  436 PTVVR------------------NTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             cHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            88888                  9999999999999999999887655322 21 222235555466667778999984

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.31  E-value=2e-05  Score=69.73  Aligned_cols=111  Identities=9%  Similarity=0.051  Sum_probs=83.4

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12153         28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLI  107 (236)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  107 (236)
                      ...+...+.+..+..+|.+.++++.||+++|+++.+..++..+.+++....++... ...-.+.|++.+..+|..+....
T Consensus       269 ~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~  347 (410)
T TIGR00885       269 GFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIAL  347 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555666778899999999999999999999988888888888877766444 45556778888889999999999


Q ss_pred             hhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153        108 ELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus       108 e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      +..+++.+                  ....++..  ..+|+.+.|.+.+.+.
T Consensus       348 ~~~g~~~~------------------~~s~~l~~--~~~Gga~~p~l~G~~~  379 (410)
T TIGR00885       348 KGLGQDTK------------------YGAAGLVM--AIIGGGIVPPLQGFII  379 (410)
T ss_pred             hhhhhhhh------------------hhHHHHHH--HHhccchHHHHHHHHH
Confidence            99987655                  32333322  2388888888877764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.30  E-value=7.6e-05  Score=67.43  Aligned_cols=163  Identities=18%  Similarity=0.057  Sum_probs=101.2

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHH-HHHHHHHHHHHHHHHHh-cc-HHHHHHHHHHHHHhhhhhhHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIM-LISFYGQGAISIAIVYN-RS-FPVYLILRTMQGFFVQGLQNST  102 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l-~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~g~~~~~~~~~~  102 (236)
                      ..+..++..++..+..++..+..|.++|+-|+||-+ .+..++..+.+..+.+. ++ ++...++-.+..++.+......
T Consensus        68 ~~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy  147 (477)
T PF11700_consen   68 TSSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY  147 (477)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567888899999999999999999999866554 45555555666666653 33 3333444445556666667777


Q ss_pred             HHHHHhhcCccccccccchhhh--------hhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-----------hhHH
Q psy12153        103 YTLLIELFPTRWRIGVATYTLL--------IELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-----------NWRD  163 (236)
Q Consensus       103 ~~~~~e~~~~~~r~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-----------~w~~  163 (236)
                      .+++.|+.+++.+.....-...        -|.-....|++..+.-.....+|+++.-.+...+.           +.|.
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~  227 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV  227 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence            8899999887765100000000        00000011245556555556666666555444331           2477


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccchh
Q psy12153        164 AELVTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~pet~~  188 (236)
                      .+.+.++.-++..+..++++||.|+
T Consensus       228 ~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  228 AFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            8888888877788888889999875

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.28  E-value=4.4e-05  Score=66.71  Aligned_cols=115  Identities=14%  Similarity=0.012  Sum_probs=82.4

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHH-HHHHHHHH--hccHHHHHHHHHHHHHhhhhhhHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQG-AISIAIVY--NRSFPVYLILRTMQGFFVQGLQNST  102 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~  102 (236)
                      +..+.++......++..++.++.+++.||++|+........... +.......  ..+.+.+.....+.|++.+...+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (394)
T PRK11652        241 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLA  320 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888888899999999999984433322222222 21111111  2345566677788888888888888


Q ss_pred             HHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153        103 YTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus       103 ~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      ..+..|..| +++                  +...++.+....+|..+++.+.+.+.
T Consensus       321 ~~~~~~~~~-~~~------------------g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        321 TSGAMEPFP-YLA------------------GTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHhhcc-ccc------------------hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            888888886 467                  88888988888999999998887774

>KOG2563|consensus

Probab=98.23  E-value=1.2e-05  Score=70.63  Aligned_cols=144  Identities=12%  Similarity=0.076  Sum_probs=103.7

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhc------cHH--HHHHHHHHHHHhhhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR------SFP--VYLILRTMQGFFVQG   97 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~l~g~~~~~   97 (236)
                      +.+..-|...+|++.+....+++.|+.|++|-|..++++..+.++++.+-..+.      .++  ....+..+.+.++-.
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F  156 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF  156 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence            556667899999999999999999999999999999999999999999877643      223  455666776666554


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---------hhHH--HHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---------NWRD--AEL  166 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---------~w~~--~~~  166 (236)
                      .......+..-||++++|                  ..+......+..+|..++.++.+.+.         .|..  .|+
T Consensus       157 im~lPskiA~~WF~~~qr------------------a~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~  218 (480)
T KOG2563|consen  157 ILGLPSKIAAVWFPPDQR------------------AIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFL  218 (480)
T ss_pred             hhccccHHHHhhCCcchh------------------hhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHH
Confidence            444445677788888888                  88888877777788888877777663         3533  344


Q ss_pred             HHHhHHHHHHHHHHhhcccch
Q psy12153        167 VTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       167 i~~~~~~~~~~~~~~~~pet~  187 (236)
                      ...++..+...+..+..++.|
T Consensus       219 ~~~~l~~l~l~l~~~~~~~~P  239 (480)
T KOG2563|consen  219 GVECLAALLLALVLFVFTKKP  239 (480)
T ss_pred             HHHHHHHHHHHHHHHhcCCCC
Confidence            444444333444444455544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.22  E-value=3.6e-05  Score=66.13  Aligned_cols=146  Identities=11%  Similarity=0.048  Sum_probs=109.8

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF-GRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF   94 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   94 (236)
                      +..|-++   |..+.|+..+...+.....++....+++|. ++|+..+....++.++.+.+.+.+....+.. .++.|++
T Consensus       234 ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G  309 (395)
T COG2807         234 ILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLG  309 (395)
T ss_pred             HHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCc
Confidence            4456677   999999999999999999999999999976 7889888888888888888877665444444 4889999


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~  170 (236)
                      .|..++.....+.+-.+..++.                 +...++.|....+=...+|.+.+++.    +|+..+.....
T Consensus       310 ~G~~F~laL~li~~rs~~a~~A-----------------a~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~  372 (395)
T COG2807         310 QGGAFPLALTLILLRSSDAAIA-----------------AALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLAL  372 (395)
T ss_pred             cchHHHHHHHHHHhhcCChHHH-----------------HHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHH
Confidence            9999999988888877655441                 55555555555555556777777764    79888877777


Q ss_pred             HHHHHHHHHHhh
Q psy12153        171 PFVGFSLFYVWF  182 (236)
Q Consensus       171 ~~~~~~~~~~~~  182 (236)
                      ..+++.+..+..
T Consensus       373 ~~i~m~i~Gl~a  384 (395)
T COG2807         373 ATLLMLIFGLRA  384 (395)
T ss_pred             HHHHHHHHHhhc
Confidence            764444444433

>KOG3762|consensus

Probab=98.20  E-value=2.9e-06  Score=75.97  Aligned_cols=125  Identities=14%  Similarity=0.070  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy12153         30 NAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIEL  109 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  109 (236)
                      .|....+...+-++.-++.+++.+|+|+-+++.+++.+..+=.+..+...|.|..+...+++|+..+..+..+.+|++..
T Consensus       408 fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~v  487 (618)
T KOG3762|consen  408 FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHV  487 (618)
T ss_pred             eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34555556666777778889999999999999999999998888889999999999999999999999999999999999


Q ss_pred             cCccccccccchhhhhhccccccchhhHHHHHH-HHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153        110 FPTRWRIGVATYTLLIELFPTRWRIGVAWVTEI-CWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      .|++.|                  +.+.++.+. ...+|-.+|+++++.+.   +-+..|.+.++.+
T Consensus       488 aPp~l~------------------at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc  536 (618)
T KOG3762|consen  488 APPGLR------------------ATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC  536 (618)
T ss_pred             CCCcch------------------HHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence            999999                  777776643 44566666666666664   5577787777776

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.18  E-value=8.2e-06  Score=71.87  Aligned_cols=144  Identities=13%  Similarity=0.006  Sum_probs=73.9

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHH--HHHHHHHH-H----hccHHH-HHHHHHHH
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQ--GAISIAIV-Y----NRSFPV-YLILRTMQ   91 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~--~~~~~~~~-~----~~~~~~-~~~~~~l~   91 (236)
                      -|+   +.++.|.+.++..+...+.+++.|.++||+|.||.+++.....  ..+.+... +    ..|.+. .+++-...
T Consensus        38 ~GL---s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l  114 (412)
T PF01306_consen   38 AGL---SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYL  114 (412)
T ss_dssp             H------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTT
T ss_pred             cCC---CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466   9999999999999999999999999999999666555433222  22222221 1    123221 12222223


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHH
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTS  169 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~  169 (236)
                      |+...+..+..-++..+....+                    +.-.|=.-...++|.+++..+++.+.  +-+..|++..
T Consensus       115 ~~~f~~~~~~~Ea~~er~sr~~--------------------~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s  174 (412)
T PF01306_consen  115 GLVFNAGVPLSEAYAERVSRRN--------------------GFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIAS  174 (412)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHH--------------------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcccchHHHHHHHHHHHHh--------------------cCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHH
Confidence            3333333444444444433211                    22233344444555555555555543  3355677666


Q ss_pred             hHHHHHHHHHHhhcccc
Q psy12153        170 LPFVGFSLFYVWFIPES  186 (236)
Q Consensus       170 ~~~~~~~~~~~~~~pet  186 (236)
                      ...++..++..+.-|+.
T Consensus       175 ~~~~il~lll~~~~~~~  191 (412)
T PF01306_consen  175 AAAIILLLLLLLLKPDV  191 (412)
T ss_dssp             HHHHHHHHHHHSS---S
T ss_pred             HHHHHHHHHHHHcCCcC
Confidence            66544555545555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.14  E-value=3.4e-07  Score=83.71  Aligned_cols=124  Identities=12%  Similarity=0.027  Sum_probs=2.9

Q ss_pred             CcceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----------------
Q psy12153         14 GEPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY----------------   77 (236)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~----------------   77 (236)
                      .++-.+|++   +..+.|++.+.+-++..+..++..++.+|-.|-+.+-+|.++.++++++.++                
T Consensus        27 ttiErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~  103 (539)
T PF03137_consen   27 TTIERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNS  103 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccc
Confidence            466788999   9999999999999999999999999999987777778888888888887763                


Q ss_pred             ----------h-------------------c-----cHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhh
Q psy12153         78 ----------N-------------------R-----SFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTL  123 (236)
Q Consensus        78 ----------~-------------------~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~  123 (236)
                                .                   .     -+..++++.++.|+|....++...+|+=|..+++.-        
T Consensus       104 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s--------  175 (539)
T PF03137_consen  104 NGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS--------  175 (539)
T ss_dssp             ------------------------------------------------SSS-----------------------------
T ss_pred             ccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC--------
Confidence                      0                   0     023466788999999999999999999999988877        


Q ss_pred             hhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        124 LIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                                +.-.++......+|.++|.++++.+
T Consensus       176 ----------plYiGi~~~~~~lGPa~Gf~lg~~~  200 (539)
T PF03137_consen  176 ----------PLYIGILYAMSILGPALGFLLGSFC  200 (539)
T ss_dssp             -----------------------------------
T ss_pred             ----------ccchhhhhHHhhccHHHHHHHHHHH
Confidence                      6667777777777777776666543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.13  E-value=9.5e-05  Score=56.64  Aligned_cols=105  Identities=10%  Similarity=0.048  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcC
Q psy12153         32 AVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFP  111 (236)
Q Consensus        32 ~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~  111 (236)
                      ...++.+....+++++.+.+.+++|.|+.++++.++..+-.. ..+.++.+.++....+.|++.+..+.....++.+..+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIA-SFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            445556666778888889999999999999999888764433 3456778888899999999999999999999999999


Q ss_pred             ccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHH
Q psy12153        112 TRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVS  155 (236)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~  155 (236)
                      ++.|                  ++..++.-.....+.+.|.++.
T Consensus       120 ~~~~------------------~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  120 EETI------------------GRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHH------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence            8888                  8877777666666666665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.11  E-value=0.00012  Score=64.36  Aligned_cols=137  Identities=12%  Similarity=0.196  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcC
Q psy12153         32 AVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFP  111 (236)
Q Consensus        32 ~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~  111 (236)
                      -+.-+..-.+....++...+.|..+-|++++++.+...+...+..+.++...+-+..++.|++.+. ....++++-...+
T Consensus        45 ~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~  123 (412)
T PF01770_consen   45 EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVD  123 (412)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecC
Confidence            344445556677888999999999999999999999899888888999999999999999988755 3445667766666


Q ss_pred             ccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-----hhHHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153        112 TRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-----NWRDAELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-----~w~~~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                      +++-                  .++.+......-+|..++.+++..+.     +++....+..... .++++..+++|..
T Consensus       124 ~~~y------------------q~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~-~~a~~~~~fLP~~  184 (412)
T PF01770_consen  124 KEHY------------------QKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASV-SLALLIALFLPMP  184 (412)
T ss_pred             HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHcCCC
Confidence            6655                  67777777777777777777666653     3454544444333 5667777788876


Q ss_pred             hh
Q psy12153        187 PL  188 (236)
Q Consensus       187 ~~  188 (236)
                      ++
T Consensus       185 ~~  186 (412)
T PF01770_consen  185 KR  186 (412)
T ss_pred             Cc
Confidence            54

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.08  E-value=8.6e-05  Score=66.33  Aligned_cols=150  Identities=13%  Similarity=0.124  Sum_probs=112.5

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhh----hCc-hHHHHHHHHHHHHHHHHHHHhcc------HHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADR----FGR-RVIMLISFYGQGAISIAIVYNRS------FPVYLI   86 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~   86 (236)
                      ..+++   +....|.+..+.-+.-++.-++.|.++||    +|| ||-++++.+..++.+.++..+++      ....++
T Consensus        41 dv~Gi---s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v  117 (467)
T COG2211          41 DVFGL---SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV  117 (467)
T ss_pred             cccCC---cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence            45677   88888888888888889999999999996    675 56777888888888888887663      233445


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhcC-ccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc------
Q psy12153         87 LRTMQGFFVQGLQNSTYTLLIELFP-TRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP------  159 (236)
Q Consensus        87 ~~~l~g~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~------  159 (236)
                      .-.+.+++.........++..|+.+ +++|                  .+..+.-+....+|.++...+...+.      
T Consensus       118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER------------------~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~  179 (467)
T COG2211         118 TYMLLGLGYTLVNIPYGALGPEITQDPQER------------------ASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG  179 (467)
T ss_pred             HHHHHHHHHHheeCchhhcchhhcCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5566777777776677788888875 5667                  88899988888888877766654441      


Q ss_pred             ----hhHHHHHHHHhHHHHHHHHHHhhcccchh
Q psy12153        160 ----NWRDAELVTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       160 ----~w~~~~~i~~~~~~~~~~~~~~~~pet~~  188 (236)
                          +|+..-.+.+++.++..+++++..+|.+.
T Consensus       180 ~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~  212 (467)
T COG2211         180 DKALGYQGTALVLGVIGVILLLFCFFNVKERVV  212 (467)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence                57777777777776667777777777653

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.07  E-value=0.00021  Score=64.54  Aligned_cols=142  Identities=15%  Similarity=-0.026  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhCc-hHHHHHHHHHHHHHHHHHHHhcc---------------------HHHHHHH
Q psy12153         30 NAAVVTLYFLGVILGSIPAGLLADRFGR-RVIMLISFYGQGAISIAIVYNRS---------------------FPVYLIL   87 (236)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~g~l~Dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~   87 (236)
                      ..+...++.+...+.++.-..+.+|+|+ |++..++.++.+++.....+.++                     .+..++.
T Consensus       307 G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  386 (477)
T TIGR01301       307 GAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIV  386 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHH
Confidence            3455566666667888888899999985 67768887777777666654332                     2556667


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc-----hhH
Q psy12153         88 RTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-----NWR  162 (236)
Q Consensus        88 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-----~w~  162 (236)
                      ..+.|+..+..+...++++++..+++.|..                |..+++.+.+..+..++..+..+.+.     +-.
T Consensus       387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~----------------G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~  450 (477)
T TIGR01301       387 FAILGIPLAITYSIPFALASIRSSNLGAGQ----------------GLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNL  450 (477)
T ss_pred             HHHhhHHHHHHHHHhHHHHHHHccccCCCC----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCe
Confidence            778899999999999999999998532211                88899999998888888876555532     235


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        163 DAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                      .++.+.++..++.+++..+.+|.++
T Consensus       451 ~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       451 PAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             eHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            6777888888777888888899764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.06  E-value=1.6e-05  Score=68.52  Aligned_cols=107  Identities=24%  Similarity=0.252  Sum_probs=75.5

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH--hc--cHHHHHHHHHHHHHh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY--NR--SFPVYLILRTMQGFF   94 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~g~~   94 (236)
                      .+++   +..+.+...++..+...++.+++|+++||+|||+.+..+..+...+......  .+  +.+...+...+.++.
T Consensus       255 ~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (366)
T TIGR00886       255 QFGL---SKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFF  331 (366)
T ss_pred             HcCC---cHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence            4555   7888888899999999999999999999999998877776666555554443  22  444444444445555


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVG  147 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  147 (236)
                      .|...+....++.+..| +++                  +...++.+...++|
T Consensus       332 ~g~~~~~~~~~~~~~~~-~~~------------------g~~~g~~~~~~~~g  365 (366)
T TIGR00886       332 SGAGNGSTFALVPHIFR-RAT------------------GAVSGLVGAIGNLG  365 (366)
T ss_pred             hccccchhhhcchhhch-hhc------------------ccHHHHHHHhccCC
Confidence            55555666777788876 467                  88888777655543

>TIGR01272 gluP glucose/galactose transporter

Probab=97.91  E-value=8e-05  Score=63.50  Aligned_cols=92  Identities=13%  Similarity=0.054  Sum_probs=73.6

Q ss_pred             HhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy12153         77 YNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSY  156 (236)
Q Consensus        77 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~  156 (236)
                      ...+++.+++..++.|.|.+...+..+.++++..+++++                  ++.+++.+.++.+|..++|.+..
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~------------------~~~l~~~~~~~~~G~~~gP~i~~   67 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETA------------------ASRLALTQAFNKLGTTVAPLFGG   67 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchH------------------HHHHHHHHHHhhhHHHHHHHHHH
Confidence            456788999999999999999999999999999999888                  99999999999999999999988


Q ss_pred             hcc-------------------hhHHHHHHHHhHHHHHHHHH-Hhhcccc
Q psy12153        157 WFP-------------------NWRDAELVTSLPFVGFSLFY-VWFIPES  186 (236)
Q Consensus       157 ~~~-------------------~w~~~~~i~~~~~~~~~~~~-~~~~pet  186 (236)
                      .+.                   .|+++|++.+...+++.++. +.-+||.
T Consensus        68 ~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~  117 (310)
T TIGR01272        68 SLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPEL  117 (310)
T ss_pred             HHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence            543                   57888886666653433322 3334553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3764|consensus

Probab=97.81  E-value=9.8e-05  Score=64.24  Aligned_cols=142  Identities=14%  Similarity=0.040  Sum_probs=106.1

Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhhC--chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12153         27 CKWNAAVVTLYFLGVILGSIPAGLLADRFG--RRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYT  104 (236)
Q Consensus        27 ~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  104 (236)
                      ..+.|+...-..+.+.++..+.|.++||++  |......+.+.....+....+.+++..+++-++..+++.+...+....
T Consensus       305 ~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P  384 (464)
T KOG3764|consen  305 GWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIP  384 (464)
T ss_pred             CcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            445666666788889999999999999999  766666777777777777788999999988888888887777777667


Q ss_pred             HHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHH
Q psy12153        105 LLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYV  180 (236)
Q Consensus       105 ~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~  180 (236)
                      .+.++.+.++-.+            -+.-|...++.+.++.+|..+||.+++.+.   |.+|.-.+.++..+.-+.+..
T Consensus       385 ~l~~lvd~rh~s~------------~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  385 TLGYLVDPRHVSG------------FNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             hhHHhcchhhccc------------cceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            7777665433200            001178899999999999999999999885   667776677777644444333

>PTZ00207 hypothetical protein; Provisional

Probab=97.80  E-value=0.0011  Score=61.41  Aligned_cols=136  Identities=6%  Similarity=-0.107  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhh---------hCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHH
Q psy12153         33 VVTLYFLGVILGSIPAGLLADR---------FGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTY  103 (236)
Q Consensus        33 ~~~~~~l~~~~~~~~~g~l~Dr---------~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  103 (236)
                      .++++.++..+|-+..|.++.-         +.|--.+.+..+ ..++.+++.+......+.+.-++.|++.|..++...
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            6788888888888888887721         222222333344 555555555554446788999999999999999999


Q ss_pred             HHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHH-HHHHHhcc-------------h---hHHHHH
Q psy12153        104 TLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVML-SLVSYWFP-------------N---WRDAEL  166 (236)
Q Consensus       104 ~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~i~~~~~-------------~---w~~~~~  166 (236)
                      ..++|+|. |+-                  |+...+......+|+.+- ..+.+.+.             |   .+.+|+
T Consensus       475 ~i~selFg-k~~------------------g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~  535 (591)
T PTZ00207        475 LVTRTIFA-KDP------------------AKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLA  535 (591)
T ss_pred             HHHHHHhc-cch------------------HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHH
Confidence            99999999 777                  888888888888888876 34444432             1   578899


Q ss_pred             HHHhHHHHHHHHHHhhcccchh
Q psy12153        167 VTSLPFVGFSLFYVWFIPESPL  188 (236)
Q Consensus       167 i~~~~~~~~~~~~~~~~pet~~  188 (236)
                      +.+.++++..+....+.-++.+
T Consensus       536 v~~~~~~~g~~~s~~l~~R~r~  557 (591)
T PTZ00207        536 FLLGLSFLAFITSTYVHLQYRR  557 (591)
T ss_pred             HHHHHHHHHHHHHhheeeehHH
Confidence            8888884544444444445543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.78  E-value=0.00062  Score=59.57  Aligned_cols=122  Identities=18%  Similarity=0.114  Sum_probs=90.6

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhC-----chHHHHH-HHHHHHHHHHHHHH-----hc----
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFG-----RRVIMLI-SFYGQGAISIAIVY-----NR----   79 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~G-----rr~~l~~-~~~~~~~~~~~~~~-----~~----   79 (236)
                      .++.|+++   ...-.+....+..+.. ...+.+|..||+.+     ||.-+++ |.++++.+..+..+     ..    
T Consensus         5 VMIvEL~v---pA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~   80 (403)
T PF03209_consen    5 VMIVELGV---PAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQ   80 (403)
T ss_pred             hHHHHhcc---HHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            35567777   7777777777776654 56888999999999     8866664 55555555544443     22    


Q ss_pred             ---cHH----HHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHH
Q psy12153         80 ---SFP----VYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLS  152 (236)
Q Consensus        80 ---~~~----~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  152 (236)
                         +.+    ...+...+.|++.+.......++++|..|+++|                  ++..++...+-.+|.+++.
T Consensus        81 ~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R------------------~~~v~ivw~Mli~G~iv~a  142 (403)
T PF03209_consen   81 SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERR------------------PRVVAIVWVMLIVGIIVSA  142 (403)
T ss_pred             cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhh------------------hhhHHHHHHHHHHHHHHHH
Confidence               222    223445678888888888889999999999999                  9999999999999999998


Q ss_pred             HHHHhc
Q psy12153        153 LVSYWF  158 (236)
Q Consensus       153 ~i~~~~  158 (236)
                      .+.+.+
T Consensus       143 i~~g~l  148 (403)
T PF03209_consen  143 IVFGRL  148 (403)
T ss_pred             HHHHHH
Confidence            877755

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.73  E-value=0.0028  Score=55.51  Aligned_cols=120  Identities=11%  Similarity=0.041  Sum_probs=100.4

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhh-hhCchHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLAD-RFGRRVIMLISFYGQGAISIAIVY---NRSFPVYLILRTMQGF   93 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~D-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~   93 (236)
                      +.|++   +..+...++..+..|..++....|++.. |.+++++..+++.+..++......   ..+.+.+...-++.|+
T Consensus       237 ~Vfgm---sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~  313 (403)
T PF03209_consen  237 EVFGM---SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL  313 (403)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            45888   8999999999999999999999998777 778888888888888777766544   4577888888899999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      +.|.........+-+...+++.                  |..++.+.....++..++..+++.+
T Consensus       314 g~G~f~vgals~mM~lt~~~~a------------------G~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  314 GNGLFTVGALSLMMDLTSAGRA------------------GLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             hhhHHHHHHHHHHHhCCCCcch------------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888899999988877                  8899999888888888877777665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.69  E-value=0.0022  Score=56.77  Aligned_cols=132  Identities=7%  Similarity=-0.068  Sum_probs=74.7

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH-----HhccHHHHHHHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV-----YNRSFPVYLILRTMQGF   93 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~   93 (236)
                      .+|.   +..+.++.......+..+++...+.+.+|.++++.+.....+..++..+..     ..++++...+..++.++
T Consensus       248 ~~g~---s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~  324 (413)
T PRK15403        248 AGGM---TTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAF  324 (413)
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            3456   888888888778888888888777766444333332222222222222221     12333334566777788


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHhH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPN--WRDAELVTSLP  171 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~--w~~~~~i~~~~  171 (236)
                      +.+...+......- ......+                  |+..+........+..+++..++++.+  -...|...++.
T Consensus       325 G~~~~~p~~~~~al-~~~~~~~------------------G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  385 (413)
T PRK15403        325 GIGLIFPTLFRFTL-FSNNLPK------------------GTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVV  385 (413)
T ss_pred             HHHHHhHHHHHHHh-ccCCCCC------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            87777666554221 1122235                  777777777777777777777776642  24455544444


Q ss_pred             H
Q psy12153        172 F  172 (236)
Q Consensus       172 ~  172 (236)
                      .
T Consensus       386 ~  386 (413)
T PRK15403        386 A  386 (413)
T ss_pred             H
Confidence            3

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.67  E-value=0.00097  Score=61.62  Aligned_cols=109  Identities=12%  Similarity=0.037  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhCch-HHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         29 WNAAVVTLYFLGVILGSIPAGLLADRFGRR-VIMLISFYGQGAISIAIVY--NRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr-~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      ..++....+.++..++.++.|.+.-+++|- ..++++.++..+++-.++.  .+|....+...++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            457778888888899999999999888764 4445666665554444443  3355555667788888888776666666


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHH
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVS  155 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~  155 (236)
                      ..-..|.+.-                  +.+.++....-.+|+.++..+.
T Consensus       430 ~ql~~p~~~i------------------g~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  430 AQLIVPDEDI------------------GTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             eEeeeCchHH------------------HHHHHHHHHHHHHhhHHHHHHH
Confidence            6666666655                  7777777777667666665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.63  E-value=0.00019  Score=48.94  Aligned_cols=67  Identities=15%  Similarity=0.112  Sum_probs=60.4

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHH
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVY   84 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (236)
                      .+++|.++   +..+.+++.+..++|+.+|++....+.++..+++.+..+.+...+....+++.++.+.+
T Consensus        17 ~M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   17 LMQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            35678888   99999999999999999999999999999888999999999999999999988877654

Note that many members are hypothetical proteins.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.62  E-value=0.001  Score=59.40  Aligned_cols=148  Identities=18%  Similarity=0.082  Sum_probs=101.6

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh---C--chHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF---G--RRVIMLISFYGQGAISIAIVYNR----SFPVYLILR   88 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~---G--rr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~   88 (236)
                      +++++   ++.+.....++..+.. ...++.|.++|-+   |  ||+-++++.++..++....+..+    +.....+.-
T Consensus        18 ~~l~l---s~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l   93 (433)
T PF03092_consen   18 DDLGL---SPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLL   93 (433)
T ss_pred             HHcCC---CHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHH
Confidence            46788   8888777776666554 4567899999987   3  66666777777766666555433    344455555


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHH
Q psy12153         89 TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAE  165 (236)
Q Consensus        89 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~  165 (236)
                      ++..++....-...-+++.|....+..               . |+...+.......+|++++..+++.+.   +++..|
T Consensus        94 ~la~~g~a~~DV~aDa~vvE~~~~~p~---------------~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f  157 (433)
T PF03092_consen   94 FLASFGYAFADVAADALVVELARREPE---------------S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVF  157 (433)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcCCc---------------h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEe
Confidence            666677666777778888888754433               1 377788888888889988887777664   567778


Q ss_pred             HHHHhHHHHHHHHHHhhccc
Q psy12153        166 LVTSLPFVGFSLFYVWFIPE  185 (236)
Q Consensus       166 ~i~~~~~~~~~~~~~~~~pe  185 (236)
                      .+.++...+..+...++.+|
T Consensus       158 ~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  158 LISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             hHHHHHHHHHHHHHHHhhhh
Confidence            87777774555555566665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2532|consensus

Probab=97.59  E-value=0.00035  Score=62.97  Aligned_cols=137  Identities=12%  Similarity=0.119  Sum_probs=89.7

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCc---------hHHHHHHHHHHHHHHHHHHHhccHHH-HHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGR---------RVIMLISFYGQGAISIAIVYNRSFPV-YLILR   88 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Gr---------r~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~   88 (236)
                      .+|+   +..+.|+..++..+...+..+.+|.++||.-+         |..-.++..+.++..+..++.++-.. ..+.-
T Consensus       288 VL~f---~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~  364 (466)
T KOG2532|consen  288 VLGF---DVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVIL  364 (466)
T ss_pred             HhCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHH
Confidence            3556   88899999999999999999999999998844         22334555555566666665543111 11111


Q ss_pred             HHHHHhh-hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc------hh
Q psy12153         89 TMQGFFV-QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP------NW  161 (236)
Q Consensus        89 ~l~g~~~-~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~------~w  161 (236)
                      +..+++. |...+..+.-..+.. ++.-                  +..+++.+....+..+++|.+.+.+.      .|
T Consensus       365 l~~~~~~~g~~~~Gf~~~~~~~a-pq~a------------------~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW  425 (466)
T KOG2532|consen  365 LTIAIGLSGFNISGFYKNHQDIA-PQHA------------------GFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW  425 (466)
T ss_pred             HHHHHHHcccchhhhHhhhhhcc-chHH------------------HHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH
Confidence            2222222 222222222222223 3334                  89999999999999999999888774      69


Q ss_pred             HHHHHHHHhHHHHHHH
Q psy12153        162 RDAELVTSLPFVGFSL  177 (236)
Q Consensus       162 ~~~~~i~~~~~~~~~~  177 (236)
                      +.+|++.+++.++..+
T Consensus       426 ~~VF~i~a~i~~~~~i  441 (466)
T KOG2532|consen  426 RIVFLIAAGILIVGNI  441 (466)
T ss_pred             HHHHHHHHHHHHHhch
Confidence            9999999998844443

>KOG2533|consensus

Probab=97.57  E-value=0.00071  Score=61.36  Aligned_cols=90  Identities=19%  Similarity=0.190  Sum_probs=57.7

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhh----hCchHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHhhhhhhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADR----FGRRVIMLISFYGQGAIS-IAIVYNRSFPVYLILRTMQGFFVQGLQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr----~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~  100 (236)
                      +..+.+.+...+.++.+++.+.+|+++||    ..+|........+..+.. .......+.......-.....+.....+
T Consensus       307 s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  386 (495)
T KOG2533|consen  307 SELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAI  386 (495)
T ss_pred             ChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHH
Confidence            78888899999999999999999999999    666666665555544443 3333333233333222333344445555


Q ss_pred             HHHHHHHhhcCcccc
Q psy12153        101 STYTLLIELFPTRWR  115 (236)
Q Consensus       101 ~~~~~~~e~~~~~~r  115 (236)
                      ......++....+.|
T Consensus       387 ~~~~w~s~~~~g~~k  401 (495)
T KOG2533|consen  387 IALSWTSANLAGNTK  401 (495)
T ss_pred             HHHhhccccccchHH
Confidence            666677777765555

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.55  E-value=0.0019  Score=56.36  Aligned_cols=113  Identities=11%  Similarity=0.103  Sum_probs=92.5

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      +..+.+...+.+..+.++|.+.+.++..|+...+.+.+..++..+.++...+.++...+. .-++.|++.+..+|...+.
T Consensus       270 ~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPTIfsl  348 (422)
T COG0738         270 NEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIFSL  348 (422)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHHHH
Confidence            778889999999999999999999999999999999988888888888888888854443 4466789999999999999


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      ..+..+.+.                    ...+..-++..+|+.+.|.+.+++.
T Consensus       349 al~~l~~~t--------------------s~~s~~l~maivGGAiiP~l~G~i~  382 (422)
T COG0738         349 ALKNLGEHT--------------------SVGSGLLVMAIVGGAIIPPLQGVIA  382 (422)
T ss_pred             HHhccCccc--------------------cccceeeeeheecchHHHHHHHHHH
Confidence            999998443                    3344455566678888888888775

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.46  E-value=0.0056  Score=55.63  Aligned_cols=139  Identities=6%  Similarity=-0.010  Sum_probs=99.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhCc--h----H-HHHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHH
Q psy12153         29 WNAAVVTLYFLGVILGSIPAGLLADRFGR--R----V-IMLISFYGQGAISIAIVYN---------RSFPVYLILRTMQG   92 (236)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~~~g~l~Dr~Gr--r----~-~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g   92 (236)
                      ..+|.+++..+..++.+++.+++=.|.+|  |    + =+-+|+++.+++...+.+.         .+.+++++..++++
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            35677788888788888887777666632  2    1 1567777777777666431         25566778888899


Q ss_pred             HhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHH-HHHHHHHHHHHHHhcc------------
Q psy12153         93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEIC-WTVGLVMLSLVSYWFP------------  159 (236)
Q Consensus        93 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~i~~~~~------------  159 (236)
                      ++.-...|+..+.++++.|++.|                  +..++.+.+. ..+|..++..+.....            
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~------------------g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  450 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVT------------------GVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINY  450 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccc
Confidence            99888899999999999999999                  9999998774 4688888777766552            


Q ss_pred             ---hhHHHHHHHHhHHHHH-HHHHHhhccc
Q psy12153        160 ---NWRDAELVTSLPFVGF-SLFYVWFIPE  185 (236)
Q Consensus       160 ---~w~~~~~i~~~~~~~~-~~~~~~~~pe  185 (236)
                         ++...|...+...++. +++.+.++-+
T Consensus       451 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  480 (493)
T PRK15462        451 SINAYIEVFDQITWGALACVGVVLMIWLYQ  480 (493)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2445677777766555 5555555433

>KOG3626|consensus

Probab=97.43  E-value=0.00016  Score=67.57  Aligned_cols=151  Identities=12%  Similarity=0.066  Sum_probs=117.1

Q ss_pred             cceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh----------------
Q psy12153         15 EPVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN----------------   78 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----------------   78 (236)
                      ++-..|++   +..+.|++.+.+-++..+...+..+..-|.-|-+.+-+|.++.++++++.++-                
T Consensus       122 tiErRF~i---~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~  198 (735)
T KOG3626|consen  122 TIERRFKI---SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQ  198 (735)
T ss_pred             hhhhhcCC---CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhc
Confidence            34457888   88999999999999999999999999999988888888999998888877640                


Q ss_pred             ----c---------------------------c----H-HHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchh
Q psy12153         79 ----R---------------------------S----F-PVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYT  122 (236)
Q Consensus        79 ----~---------------------------~----~-~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~  122 (236)
                          +                           .    . ..++.+.++.|+|....++...+|+=|...+++-       
T Consensus       199 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~S-------  271 (735)
T KOG3626|consen  199 SVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNS-------  271 (735)
T ss_pred             cccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCC-------
Confidence                0                           0    1 2456778999999999999999999999988876       


Q ss_pred             hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----------------------hhHHHHHHHHhHHHHHHHHHH
Q psy12153        123 LLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----------------------NWRDAELVTSLPFVGFSLFYV  180 (236)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----------------------~w~~~~~i~~~~~~~~~~~~~  180 (236)
                                 ..-.++......+|.++|-+++++..                      .|+.-|++.+.+. +...+.+
T Consensus       272 -----------plYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~-~~~a~p~  339 (735)
T KOG3626|consen  272 -----------PLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALL-LFSAVPL  339 (735)
T ss_pred             -----------cHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHH-HHHHHHH
Confidence                       77778888888888888777776651                      2555667777776 4455556


Q ss_pred             hhcccch
Q psy12153        181 WFIPESP  187 (236)
Q Consensus       181 ~~~pet~  187 (236)
                      +++|.+.
T Consensus       340 f~fPk~l  346 (735)
T KOG3626|consen  340 FFFPKEL  346 (735)
T ss_pred             HhCcccC
Confidence            6667653

>KOG4686|consensus

Probab=97.26  E-value=7.2e-05  Score=62.56  Aligned_cols=115  Identities=17%  Similarity=0.061  Sum_probs=89.5

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHhhhhhhHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADR-FGRRVIMLISFYGQGAISIAIV---YNRSFPVYLILRTMQGFFVQGLQNS  101 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~  101 (236)
                      +..+..++-++|..-..+-.+++|++.|| +|-|..-++-++...++.++.+   ..+.+|.+..+|++.|+|.-.....
T Consensus        77 ~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVa  156 (459)
T KOG4686|consen   77 EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVA  156 (459)
T ss_pred             ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhh
Confidence            45566778888999999999999999996 5877766666666666666655   4788999999999999986555555


Q ss_pred             HHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        102 TYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       102 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      -..+...++..|+-                  +.++++......+|+.+-..+.+++
T Consensus       157 QN~yav~wFKGKEL------------------n~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  157 QNKYAVYWFKGKEL------------------NFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             hcceeEEEecCccc------------------cchhhHHHHHHHhhceeeeeecHHH
Confidence            67888899988888                  8999988888888876655444444

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.25  E-value=0.00067  Score=45.55  Aligned_cols=47  Identities=23%  Similarity=0.212  Sum_probs=41.0

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYG   67 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~   67 (236)
                      ++.++   +..+.|.+.++..+...++++++|.++||+||++..+.....
T Consensus        28 ~~~Gl---~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   28 KQLGL---SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            35667   999999999999999999999999999999998887765543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.09  E-value=0.0062  Score=53.10  Aligned_cols=108  Identities=7%  Similarity=-0.002  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHh--c-c------HHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccc
Q psy12153         59 VIMLISFYGQGAISIAIVYN--R-S------FPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFP  129 (236)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~~--~-~------~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~  129 (236)
                      ++++++.++..++.++..++  + .      .+.+.++..+.++|.|+.-+....+.+|.++++++              
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~--------------   67 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD--------------   67 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT--------------
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch--------------
Confidence            56777888888888874432  1 2      25677888889999999999999999999987632              


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHhh
Q psy12153        130 TRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWF  182 (236)
Q Consensus       130 ~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~~  182 (236)
                       +.|......+..+.++|..++..+..++.   +|...|.+.++.. +++++.++.
T Consensus        68 -~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~-~~~~~~f~~  121 (372)
T PF00854_consen   68 -SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGM-LLALIVFLS  121 (372)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHH-HHHHHHHHC
T ss_pred             -hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHH-HHHHHHHHh
Confidence             11267778889999999999998888875   7888888877776 444444443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.07  E-value=0.012  Score=51.84  Aligned_cols=144  Identities=13%  Similarity=-0.000  Sum_probs=88.9

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchH-HHHHHHHHHHHHHHHHHHhcc--HHH-HHHHHHHHHHhhhhhhHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRV-IMLISFYGQGAISIAIVYNRS--FPV-YLILRTMQGFFVQGLQNS  101 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~-~l~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~g~~~~~~~~~  101 (236)
                      ++...+...++..+..++-++.-|.++|+.|+|| .+-....+..+..+.+.+.++  .+. .++...+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            4566788888888999999999999999998554 444555555566666666554  333 334445555666566666


Q ss_pred             HHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHH------H----hc-----------ch
Q psy12153        102 TYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVS------Y----WF-----------PN  160 (236)
Q Consensus       102 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~------~----~~-----------~~  160 (236)
                      ..+++.++.++++-                  ++..+.-.....+|+.+.-.+.      .    ..           ..
T Consensus       136 yds~L~~~~~k~~~------------------~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~  197 (438)
T COG2270         136 YDSMLPRLTTKDNM------------------GRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED  197 (438)
T ss_pred             hhhHhhhhcCcccc------------------CcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc
Confidence            78889999887655                  4433333333333333222111      1    00           02


Q ss_pred             hHHHHHHHHhHHHHHHHHHHhhcccch
Q psy12153        161 WRDAELVTSLPFVGFSLFYVWFIPESP  187 (236)
Q Consensus       161 w~~~~~i~~~~~~~~~~~~~~~~pet~  187 (236)
                      -|..+.+.++...+..+...+..|+.+
T Consensus       198 ~ri~~~l~A~W~li~~iPm~~~v~~~~  224 (438)
T COG2270         198 VRITGLLAALWWLLFALPMILNVHDAE  224 (438)
T ss_pred             chhHHHHHHHHHHHHHhHHHhcccccc
Confidence            477777777777566666666677654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.06  E-value=0.0074  Score=53.95  Aligned_cols=142  Identities=11%  Similarity=0.019  Sum_probs=93.4

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY----------NRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~g~~~   95 (236)
                      +....+.+..+..++..+|...+...--+..-|+++.++.++..+..+.-..          .++.+..+.--.+..+..
T Consensus       253 s~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~  332 (433)
T PF03092_consen  253 SPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIG  332 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHH
Confidence            7777888888888888888888887777778788888877766655443221          112222222334444444


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--------hh---HHH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--------NW---RDA  164 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--------~w---~~~  164 (236)
                      ...+-....+.+|..|+...                  |...++.....++|..++..++..+.        ++   .+.
T Consensus       333 ~i~~mP~lvl~a~lcP~G~E------------------gt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~l  394 (433)
T PF03092_consen  333 MIAFMPSLVLAARLCPKGSE------------------GTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLL  394 (433)
T ss_pred             HHHHHHHHHHHHHHCCCCch------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH
Confidence            45555567899999999999                  88888888888888888877777663        11   223


Q ss_pred             HHHHHhHHHHHHHHHHhhcccc
Q psy12153        165 ELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       165 ~~i~~~~~~~~~~~~~~~~pet  186 (236)
                      .++..+.. ++.+....++|+.
T Consensus       395 ili~~~~~-ll~l~ll~lLp~~  415 (433)
T PF03092_consen  395 ILICSVIQ-LLPLPLLFLLPPQ  415 (433)
T ss_pred             HHHHHHHH-HHHHHHHHHcCCC
Confidence            34444444 4444455566764

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4332|consensus

Probab=97.03  E-value=0.0015  Score=54.48  Aligned_cols=84  Identities=17%  Similarity=0.059  Sum_probs=58.6

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHH-
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYT-  104 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-  104 (236)
                      ...+++.+.....-..++...+.|-++|+-|||+.-+.-++-..++| +.-.++.+-.++++|.+.|+..+..++..-+ 
T Consensus        70 gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsW  148 (454)
T KOG4332|consen   70 GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESW  148 (454)
T ss_pred             cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHH
Confidence            55666665555555566777788899999999997554444333333 3567888999999999999988877776544 


Q ss_pred             HHHhhc
Q psy12153        105 LLIELF  110 (236)
Q Consensus       105 ~~~e~~  110 (236)
                      +++|--
T Consensus       149 liaEHn  154 (454)
T KOG4332|consen  149 LIAEHN  154 (454)
T ss_pred             HHHHhh
Confidence            444443

>KOG2816|consensus

Probab=96.95  E-value=0.024  Score=51.15  Aligned_cols=119  Identities=8%  Similarity=-0.052  Sum_probs=100.5

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhh-hhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAG-LLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQ   96 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   96 (236)
                      ..+++   +..+.+...+.......+++++.. .+...+|-|++...|.....+.....++.++.|.+.....+.++. +
T Consensus       270 ~~f~w---~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~  345 (463)
T KOG2816|consen  270 AKFGW---NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G  345 (463)
T ss_pred             eecCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence            35666   888888888888888888888776 677888988899999999999999999999999988887776654 4


Q ss_pred             hhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153         97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus        97 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      ...+...+..+-+..++++                  |++.++.+..-.+..+++|.+-+.+
T Consensus       346 ~~~pa~~s~~s~~v~~~e~------------------g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQ------------------GKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             chhHHHHhHHHhhcccccc------------------cchhhHHHHHHHHhhhhhHHHHHHH
Confidence            6778888999999999999                  9999999999999999988876655

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.95  E-value=0.0035  Score=55.22  Aligned_cols=133  Identities=15%  Similarity=0.051  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhc
Q psy12153         31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELF  110 (236)
Q Consensus        31 ~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~  110 (236)
                      +.+.....+-..+..+.+.++.+|+.-+.=.....++..++.+..+++++.+.-+++-.+.+++.|........+.. .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            44555555666777788888899887444445556677888888888899888888888888888776665555543 44


Q ss_pred             CccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153        111 PTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----NWRDAELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~w~~~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                      ++..                      .+.++.+.+.++++|+..-..+.    +-|..+++...++++..+..++.+|..
T Consensus       141 ~~~~----------------------l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  141 GKSS----------------------LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             Cccc----------------------cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4321                      33444444445555544333321    346677777777744544455555543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.91  E-value=0.058  Score=48.75  Aligned_cols=116  Identities=5%  Similarity=-0.034  Sum_probs=77.8

Q ss_pred             CcchhHHHHHHHHHHHHhh-hhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh--ccH---------------------
Q psy12153         26 ECKWNAAVVTLYFLGVILG-SIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN--RSF---------------------   81 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~-~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~---------------------   81 (236)
                      +.+...++-+...+...+. .++.+++++|++|++++.+......+...+.++.  ++.                     
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4467788888777766666 8899999999999998877655555544444331  111                     


Q ss_pred             --------HHHHHHHHHHHHhhhhhhH-HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHH
Q psy12153         82 --------PVYLILRTMQGFFVQGLQN-STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLS  152 (236)
Q Consensus        82 --------~~~~~~~~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  152 (236)
                              |...+.-....+-.....+ ..+.+++|.++.++-                  .+..++..++.++|.++++
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qa------------------kRfy~l~~~ganlg~i~sg  182 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEA------------------KRFYALFGLGANVALIFSG  182 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH------------------HHHHHHHHHHHHHHHHHHH
Confidence                    1111112222233333344 557778888877776                  8999999999999999999


Q ss_pred             HHHHhcc
Q psy12153        153 LVSYWFP  159 (236)
Q Consensus       153 ~i~~~~~  159 (236)
                      .+..++.
T Consensus       183 ~~~~~~~  189 (472)
T TIGR00769       183 RTIKYFS  189 (472)
T ss_pred             HHHHHHH
Confidence            8877753

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3098|consensus

Probab=96.81  E-value=0.084  Score=47.44  Aligned_cols=109  Identities=19%  Similarity=0.220  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhh---hhCchHHHHHHHHHHHHHHHHHHHh------------------ccHHHHHHHHH
Q psy12153         31 AAVVTLYFLGVILGSIPAGLLAD---RFGRRVIMLISFYGQGAISIAIVYN------------------RSFPVYLILRT   89 (236)
Q Consensus        31 ~~~~~~~~l~~~~~~~~~g~l~D---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~   89 (236)
                      +.......++..++..+.+.+.+   |+||++++.++..+..+.+++..++                  +++....+.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            44444455555666666777765   5799999999988888887776542                  23456667778


Q ss_pred             HHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153         90 MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus        90 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      +.|++.+......+.+++... +++|                  ..+.++...-..+++.++-...+..
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~------------------~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDR------------------AQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCch------------------HHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            899999888888899999999 5667                  7777877777777776665555554

>KOG2615|consensus

Probab=96.36  E-value=0.02  Score=50.04  Aligned_cols=123  Identities=13%  Similarity=0.074  Sum_probs=95.6

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhC--chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFG--RRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   95 (236)
                      ..++.   +..+.|-+.+...+++.+.+.......||..  -+-.+..+..++.-...+.+..+....+..+..+-.+..
T Consensus       290 ~rfg~---ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~  366 (451)
T KOG2615|consen  290 GRFGY---SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFST  366 (451)
T ss_pred             CccCC---ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence            34566   7777777777777777777777777788776  556666666666666666666777777777777777776


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcchh
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNW  161 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~w  161 (236)
                      +..-+....++....|.++|                  |..+|+.....+++-.+||++++....|
T Consensus       367 A~~vt~Lt~Lv~~~~~~~qr------------------G~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  367 ASVVTCLTSLVHKYGPQSQR------------------GTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHhhHHHHHHHHhcCCcccc------------------hHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            66667677888899999999                  9999999999999999999999887665

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.29  E-value=0.11  Score=46.84  Aligned_cols=139  Identities=12%  Similarity=0.029  Sum_probs=101.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhCch-------HHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHH
Q psy12153         29 WNAAVVTLYFLGVILGSIPAGLLADRFGRR-------VIMLISFYGQGAISIAIVYN----------RSFPVYLILRTMQ   91 (236)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~   91 (236)
                      ...+.+++..+..++.+++..++.-+.+++       .-+-++.++++.+.++....          .+.++++..-+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            456778888888888888888888876554       22445566666665555432          2467778888999


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHh-------cc--hhH
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYW-------FP--NWR  162 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~-------~~--~w~  162 (236)
                      +++.=...|+..++++...|++-.                  +..++.+.+....|..++..++..       ..  ...
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~------------------s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~  466 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALK------------------SFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEG  466 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHH------------------HHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhh
Confidence            999888889999999999999888                  899999999888888888777762       11  335


Q ss_pred             HHHHHHHhHHHHHHHHHHhhccc
Q psy12153        163 DAELVTSLPFVGFSLFYVWFIPE  185 (236)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~pe  185 (236)
                      ..|+..+...+++.+.....-|+
T Consensus       467 ~~F~~~g~v~i~~~~~~~~~~~~  489 (498)
T COG3104         467 RVFGTIGVVAIVIGILLLLLSPK  489 (498)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHH
Confidence            56777777775666655555444

>PRK03612 spermidine synthase; Provisional

Probab=96.26  E-value=0.31  Score=44.79  Aligned_cols=29  Identities=14%  Similarity=0.222  Sum_probs=24.0

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADR   54 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr   54 (236)
                      +....+.+.+++.+|..+|+..++++.++
T Consensus        48 s~~~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         48 SVTQFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            56677888999999999999988887644

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.98  E-value=0.11  Score=45.94  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=79.8

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHH--HHHHHH---HHhccHHHHHHHHHHHHHhhhhhhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQG--AISIAI---VYNRSFPVYLILRTMQGFFVQGLQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~  100 (236)
                      ..++..+...+|.+|..++.--...+  |+  |++.+.+.+-..  +..++.   -+.++.+..++.-+..|+..|..+.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            35667778888888877765433322  33  333333322221  111111   2356788888888999999999999


Q ss_pred             HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcch
Q psy12153        101 STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPN  160 (236)
Q Consensus       101 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~  160 (236)
                      .....+.|-.++++|                  ..+++..+.+-++|..++.+++..+..
T Consensus       355 NtF~~I~~~~~~~~R------------------EFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  355 NTFYRISEEVPPEDR------------------EFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHhcCCHHHH------------------HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            888888888888889                  999999999999999999998887754

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1237|consensus

Probab=95.98  E-value=0.045  Score=50.69  Aligned_cols=135  Identities=12%  Similarity=0.010  Sum_probs=92.5

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHhccH-----------------------
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRF-GRRVIMLISFYGQGAISIAIVYNRSF-----------------------   81 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~-----------------------   81 (236)
                      +.....-..+.+.-...+..+.+++++|-| ||-+++.++.++..++.++.......                       
T Consensus        71 ~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~  150 (571)
T KOG1237|consen   71 SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKL  150 (571)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchH
Confidence            445555555666666677788899999976 99999999988888886655431111                       


Q ss_pred             --HHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         82 --PVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        82 --~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                        ..+.....+..+|.|+.-+.....-+|-++...+-+            ...+...+..+....++|..++..+..+.+
T Consensus       151 q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~------------~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq  218 (571)
T KOG1237|consen  151 QLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVE------------VKGIPSFFNWFYFSQNGGALLAQTVLVYIQ  218 (571)
T ss_pred             HHHHHHHHHHHheeccCCCCCcchhhcccccCccCcch------------hhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence              133334445566788888888899999998322200            001146777888888999999888888774


Q ss_pred             ---hhHHHHHHHHhHH
Q psy12153        160 ---NWRDAELVTSLPF  172 (236)
Q Consensus       160 ---~w~~~~~i~~~~~  172 (236)
                         +|.+.|.+..+..
T Consensus       219 ~~~~w~lgf~i~~~~~  234 (571)
T KOG1237|consen  219 DNVGWKLGFGIPTVLN  234 (571)
T ss_pred             hcccceeeccHHHHHH
Confidence               7887777766665

>KOG0637|consensus

Probab=95.87  E-value=0.012  Score=52.32  Aligned_cols=116  Identities=18%  Similarity=0.154  Sum_probs=78.4

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhh----hCchHHHH-HHHHHHHHHHHHHHHhccH-----------------HH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADR----FGRRVIML-ISFYGQGAISIAIVYNRSF-----------------PV   83 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr----~Grr~~l~-~~~~~~~~~~~~~~~~~~~-----------------~~   83 (236)
                      +....+.+-...-+...+.++..|..+||    ||||+-++ .+.++..++.++.++..+.                 ..
T Consensus        65 phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~  144 (498)
T KOG0637|consen   65 PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVL  144 (498)
T ss_pred             CcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHH
Confidence            33444444445556667788889999995    78776555 5556666666665543221                 12


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchh-hHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         84 YLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIG-VAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        84 ~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      .+++..+.-++........-+++.|+...+++                  .+ +++.+....++|+.+|..++++..
T Consensus       145 ~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~------------------~~~Ans~f~~f~avGnvLGY~~g~y~~  203 (498)
T KOG0637|consen  145 FILGFWLLDVANNTLQGPCRALLADLARGDAK------------------KTRANSVFSFFMAVGNVLGYALGSYLG  203 (498)
T ss_pred             HHHHhHHHHhhhhhhhhhHHHHHHHhccChhh------------------hhccchhHHHHHHhcceeeeecccccC
Confidence            23333444455556677788999999877776                  44 899999999999999998887763

>KOG3098|consensus

Probab=95.21  E-value=0.13  Score=46.34  Aligned_cols=106  Identities=8%  Similarity=0.032  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCcc
Q psy12153         34 VTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTR  113 (236)
Q Consensus        34 ~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~  113 (236)
                      ..+.+....+..++.+.+.|+.|.|..+.++..+...-...... .|.+-+.....+.|+|.+..+..-..+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            56667777889999999999999999999998877666554444 45666777888899999888888888999999988


Q ss_pred             ccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        114 WRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      .+                  .+..++.-.....+.++|+.+...+
T Consensus       135 ti------------------e~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  135 TI------------------ERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hH------------------HHHHHHHHHHHHHHHHhhhHhheee
Confidence            88                  8888887777777777776655443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.91  E-value=3.4  Score=37.71  Aligned_cols=133  Identities=14%  Similarity=0.123  Sum_probs=68.5

Q ss_pred             CcchhHHHHHHHHH-HHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH--hcc-------H-HHHHHH---HHHH
Q psy12153         26 ECKWNAAVVTLYFL-GVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY--NRS-------F-PVYLIL---RTMQ   91 (236)
Q Consensus        26 ~~~~~~~~~~~~~l-~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~--~~~-------~-~~~~~~---~~l~   91 (236)
                      +.+...++-....+ ...+......++++|++|.+++-+..........+.++  .++       . +.-...   ..+.
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            34555566554444 44566778999999999999877655544444443332  111       1 100000   0111


Q ss_pred             HHh--hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         92 GFF--VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        92 g~~--~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      +..  ..-......-.++|++..=.- .-.=|.++-|+++.+...+...+...+.++|.++++.+..++.
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvl-SlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~  204 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVL-SLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFS  204 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            100  000111122223333321100 0011444455555555589999999999999998887766654

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.69  E-value=2  Score=38.56  Aligned_cols=116  Identities=16%  Similarity=0.016  Sum_probs=80.3

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH---Hhc-------cHHHHHHHHHHHHHhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV---YNR-------SFPVYLILRTMQGFFV   95 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~l~g~~~   95 (236)
                      +....+..-++..+..+.+++.+.++.+|+|..+.=+++.........+..   +.+       +...++.+-.+.-+|.
T Consensus       291 s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GL  370 (432)
T PF06963_consen  291 SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGL  370 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Confidence            788888889999999999999999999999998888877665554433332   222       1222223333333433


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP  159 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~  159 (236)
                      =+.--...-++.|..|+++|                  |..++.-....++-.++...+...++
T Consensus       371 W~fDL~~~qi~Qe~V~~~~R------------------g~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  371 WSFDLAVTQIMQENVPESER------------------GAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HhhhHHHHHhhcccCCHHHh------------------hHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            23333456688899999999                  99999888877777777766655553

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2563|consensus

Probab=93.16  E-value=0.18  Score=44.94  Aligned_cols=90  Identities=17%  Similarity=0.256  Sum_probs=58.9

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhC-chHHHHHHHHHHHHHHHHHH-Hhc---cHHHHHHHHHHHHHhhhhhhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFG-RRVIMLISFYGQGAISIAIV-YNR---SFPVYLILRTMQGFFVQGLQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~G-rr~~l~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~l~g~~~~~~~~  100 (236)
                      +....|++..+..++.++++...|.++||.. -|.+.++......++..... ...   ..+.+...-.+.|.+..+..|
T Consensus       299 ~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~P  378 (480)
T KOG2563|consen  299 EGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLP  378 (480)
T ss_pred             CccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCC
Confidence            5568899999999999999999999999995 45555665555555532222 211   122333344556777667777


Q ss_pred             HHHHHHHhhc-Ccccc
Q psy12153        101 STYTLLIELF-PTRWR  115 (236)
Q Consensus       101 ~~~~~~~e~~-~~~~r  115 (236)
                      +..-+-.|.. |..++
T Consensus       379 ig~ElgvE~TyPv~E~  394 (480)
T KOG2563|consen  379 IGFELGVETTYPVAEG  394 (480)
T ss_pred             cceeeeeeeccccCCc
Confidence            7777777764 55444

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=92.87  E-value=6.5  Score=35.76  Aligned_cols=118  Identities=10%  Similarity=0.040  Sum_probs=78.1

Q ss_pred             cCcchhHHHHHHHHH-HHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh---------cc----------H---
Q psy12153         25 HECKWNAAVVTLYFL-GVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN---------RS----------F---   81 (236)
Q Consensus        25 ~~~~~~~~~~~~~~l-~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~----------~---   81 (236)
                      .++...+++-+...+ +..+..++..++.++..|.+++-+..........++++.         ++          .   
T Consensus        58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~  137 (509)
T COG3202          58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF  137 (509)
T ss_pred             CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence            366777888887777 678888999999999999998876655555544444431         01          0   


Q ss_pred             ----------HHHHHHHHHHHHhhhhhhH-HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHH
Q psy12153         82 ----------PVYLILRTMQGFFVQGLQN-STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVM  150 (236)
Q Consensus        82 ----------~~~~~~~~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  150 (236)
                                |...+.-.+.-+-.....+ .-+....|.++.++-                  .+....++++.+++..+
T Consensus       138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ea------------------kRFy~lf~l~~ni~lll  199 (509)
T COG3202         138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEA------------------KRFYPLFGLGANISLLL  199 (509)
T ss_pred             ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh------------------hhhHHHHHHHHHHHHHH
Confidence                      1111111222222222223 335567777776666                  89999999999999999


Q ss_pred             HHHHHHhcch
Q psy12153        151 LSLVSYWFPN  160 (236)
Q Consensus       151 ~~~i~~~~~~  160 (236)
                      ++.+..++..
T Consensus       200 sg~~~~~~~k  209 (509)
T COG3202         200 SGEVTSWLSK  209 (509)
T ss_pred             HHHHHHHHhh
Confidence            9999888854

>KOG3762|consensus

Probab=92.73  E-value=0.11  Score=47.33  Aligned_cols=58  Identities=21%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             eeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCc-hHHHHHHHHHHHHHHHHHHH
Q psy12153         17 VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGR-RVIMLISFYGQGAISIAIVY   77 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Gr-r~~l~~~~~~~~~~~~~~~~   77 (236)
                      -.++++   +..+.+.++..--+..+++.+++|.++||+-+ |+.++.+.++.....+++.+
T Consensus        38 ~kQLGl---~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f   96 (618)
T KOG3762|consen   38 FKQLGL---NPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF   96 (618)
T ss_pred             HHHcCC---CHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence            356788   99999999999999999999999999999965 45555555655556665554

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.48  E-value=4  Score=36.65  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCcc
Q psy12153         81 FPVYLILRTMQGFFVQGLQNSTYTLLIELFPTR  113 (236)
Q Consensus        81 ~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~  113 (236)
                      ++..++.-++.|++.+........+.+ .+|++
T Consensus       106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~  137 (437)
T TIGR00939       106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPST  137 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH
Confidence            445556667778887777776666666 44444

>KOG1330|consensus

Probab=91.32  E-value=0.49  Score=42.47  Aligned_cols=30  Identities=17%  Similarity=0.268  Sum_probs=25.2

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRF   55 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~   55 (236)
                      +..+..+...++..+..+|.+++|.++||+
T Consensus       281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  281 DHNATLIFGGVTCAGGSLGVLFGGIISDKL  310 (493)
T ss_pred             ccccchhhhhHHHhhchhhheehHHHHHHH
Confidence            455666778888899999999999999994

>KOG3574|consensus

Probab=90.01  E-value=3.9  Score=36.24  Aligned_cols=96  Identities=15%  Similarity=0.153  Sum_probs=51.3

Q ss_pred             hhhhhhhhh-----hhCchHHHHH-HHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12153         45 SIPAGLLAD-----RFGRRVIMLI-SFYGQGAISIAIVY-----------NRSFPVYLILRTMQGFFVQGLQNSTYTLLI  107 (236)
Q Consensus        45 ~~~~g~l~D-----r~Grr~~l~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  107 (236)
                      .+.+.++.|     |+|||+.-++ +..+....+...+.           .++...+.+..++.-+..+.--...-.+..
T Consensus        80 KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL  159 (510)
T KOG3574|consen   80 KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL  159 (510)
T ss_pred             HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            346778889     9999986543 23333333333332           122222222222222222221122344555


Q ss_pred             hhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy12153        108 ELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF  158 (236)
Q Consensus       108 e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~  158 (236)
                      .+..+++-                  |.+......+.++|.+++..+.-.+
T Consensus       160 tmLs~e~l------------------gyaST~q~Vg~~~GyfL~~~ifLaL  192 (510)
T KOG3574|consen  160 TMLSRENL------------------GYASTCQSVGQTAGYFLGNVVFLAL  192 (510)
T ss_pred             HhcCHhhc------------------CchhHHHHHHHhhhHHhhcceeeEe
Confidence            66666767                  7778888888888888876654444

>KOG0637|consensus

Probab=89.52  E-value=0.15  Score=45.64  Aligned_cols=129  Identities=16%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      ....-.|-..++.+...+.+...-++.+|+|-|+.+..+.....++..+.+...+.......+...|+-.+......+..
T Consensus       330 GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l  409 (498)
T KOG0637|consen  330 GVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGA  409 (498)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHH
Confidence            55555677777888888999999999999997676666666677777777777888777788888885555555555555


Q ss_pred             HHhhcCccccccc---cchhhh-hhccccccc-hhhHHHHHHHHHHHHHHHHHH
Q psy12153        106 LIELFPTRWRIGV---ATYTLL-IELFPTRWR-IGVAWVTEICWTVGLVMLSLV  154 (236)
Q Consensus       106 ~~e~~~~~~r~~~---~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~i  154 (236)
                      +++..-.+.-.+.   ++|... .|+-+...+ |...+..++...+-.++....
T Consensus       410 ~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~  463 (498)
T KOG0637|consen  410 LALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLG  463 (498)
T ss_pred             HHHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeecc
Confidence            5555433322111   111111 344444332 666666666666655554433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=88.44  E-value=18  Score=32.45  Aligned_cols=141  Identities=11%  Similarity=-0.098  Sum_probs=69.2

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH----H---hcc-----HHHHHHHHHHHHHhh
Q psy12153         28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV----Y---NRS-----FPVYLILRTMQGFFV   95 (236)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~----~---~~~-----~~~~~~~~~l~g~~~   95 (236)
                      .-.+....+-.+..++..+..|...||..|.++...+.+..-++..+..    .   .+.     .+.......+ -...
T Consensus        38 l~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~  116 (432)
T PF06963_consen   38 LPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFAL-LILL  116 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHH-HHHH
Confidence            3344445555666677888889999999999987776555443332221    1   111     1111111111 1111


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHhHH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPN---WRDAELVTSLPF  172 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~---w~~~~~i~~~~~  172 (236)
                      +.... .......+.-+++      |+-+.---+...+.+.++...-.--+..+++|++.+.+.+   .+....+.+...
T Consensus       117 ~~i~~-Las~~~~iavERD------WVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N  189 (432)
T PF06963_consen  117 GAIER-LASIANTIAVERD------WVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWN  189 (432)
T ss_pred             HHHHH-HHHhhhhheeccc------hhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence            11111 1111111111110      1111101122333777777777777888999998888753   455555555555


Q ss_pred             HHHH
Q psy12153        173 VGFS  176 (236)
Q Consensus       173 ~~~~  176 (236)
                      ++..
T Consensus       190 ~~S~  193 (432)
T PF06963_consen  190 LASV  193 (432)
T ss_pred             HHHH
Confidence            3333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=87.55  E-value=7.5  Score=35.53  Aligned_cols=87  Identities=15%  Similarity=0.055  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhCch--HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy12153         29 WNAAVVTLYFLGVILGSIPAGLLADRFGRR--VIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLL  106 (236)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  106 (236)
                      .+|..-.+..+...+.++..|++-.++.|-  ..+-+..++.+...+++...+|.+...++-++.+.......+....-+
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667788888888889999999997777553  333444555556666777889999988888888877767777777777


Q ss_pred             HhhcCcccc
Q psy12153        107 IELFPTRWR  115 (236)
Q Consensus       107 ~e~~~~~~r  115 (236)
                      +.....+.-
T Consensus       379 A~~L~~~~~  387 (511)
T TIGR00806       379 ASSLSKELC  387 (511)
T ss_pred             HHHhcccce
Confidence            777665544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3810|consensus

Probab=86.85  E-value=1.2  Score=38.84  Aligned_cols=131  Identities=15%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             HHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCcccccccc
Q psy12153         40 GVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVA  119 (236)
Q Consensus        40 ~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~  119 (236)
                      .+.+.-++.=.+.|..--|++++.-.+..........+.++.+.+=+.-++.|...+. -...++++-+..+++.+    
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Y----  128 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMY----  128 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHH----
Confidence            3455556666789988889988877666666666666777877777777777766533 23356777777777777    


Q ss_pred             chhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHH--HHHHHHhHHHHHHHHHHhhcccchhH
Q psy12153        120 TYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRD--AELVTSLPFVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~--~~~i~~~~~~~~~~~~~~~~pet~~~  189 (236)
                                    .+..+......-.|-.++..++..+.  +|..  ..=.+.+....++....+++|..+|.
T Consensus       129 --------------qrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rS  188 (433)
T KOG3810|consen  129 --------------KRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRS  188 (433)
T ss_pred             --------------HHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchh
Confidence                          77777777777777777777766664  2211  11233444445666777778876543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=83.81  E-value=14  Score=33.26  Aligned_cols=60  Identities=20%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             cHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHh
Q psy12153         80 SFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYW  157 (236)
Q Consensus        80 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~  157 (236)
                      +-+..++..++.|+..|-.......+..+..++++|                  ..+..+..++..+|..+|..++..
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~------------------e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHER------------------EVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666778889999988888888888888888888                  888888888888888888766443

>KOG1479|consensus

Probab=83.12  E-value=25  Score=31.24  Aligned_cols=31  Identities=26%  Similarity=0.187  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHhhcC
Q psy12153         81 FPVYLILRTMQGFFVQGLQNSTYTLLIELFP  111 (236)
Q Consensus        81 ~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~  111 (236)
                      +...++.-.+.+.+.+..+...+...+++.+
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~  147 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFPS  147 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhcCCH
Confidence            3445555666677776666666666665543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=82.76  E-value=15  Score=32.75  Aligned_cols=88  Identities=13%  Similarity=0.022  Sum_probs=62.2

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIML--ISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTY  103 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  103 (236)
                      ...-.|.+..+..+...++++..|.+..++.+..-+.  ...++.+...+++...+|.+...++-++.+.......+...
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566788999999999999999999977777654443  34455556666777888888888877777665555555555


Q ss_pred             HHHHhhcCcc
Q psy12153        104 TLLIELFPTR  113 (236)
Q Consensus       104 ~~~~e~~~~~  113 (236)
                      .-++.....+
T Consensus       363 ~qIA~~l~~e  372 (412)
T PF01770_consen  363 FQIAKNLSEE  372 (412)
T ss_pred             HHHHHhcccc
Confidence            5555555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479|consensus

Probab=82.50  E-value=10  Score=33.66  Aligned_cols=108  Identities=18%  Similarity=0.082  Sum_probs=68.9

Q ss_pred             HHHHHH-HHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH-------HHhccHHHHHHHHHHHHHhhhhhhHHH
Q psy12153         31 AAVVTL-YFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI-------VYNRSFPVYLILRTMQGFFVQGLQNST  102 (236)
Q Consensus        31 ~~~~~~-~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~g~~~~~~~~~~  102 (236)
                      .....+ +++.-.+|.+.+.++-+.=.|+.......=...+..+.+       ....+-+.++....+.|+..|-.....
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~  364 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLI  364 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhhe
Confidence            444555 888888887766666554434333322222222332221       123455677788888899998888878


Q ss_pred             HHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy12153        103 YTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSY  156 (236)
Q Consensus       103 ~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~  156 (236)
                      ..+..+..+++++                  ..+..+..+....|..+|..++.
T Consensus       365 m~~aPk~v~~~e~------------------e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  365 MMYAPKQVKPSEK------------------EAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             ehhcCCCCChHHH------------------HHHHHHHHHHHHHHHHHhhHHHH
Confidence            8888888888888                  77777777777777777766543

>TIGR01666 YCCS hypothetical membrane protein, TIGR01666

Probab=82.33  E-value=37  Score=32.64  Aligned_cols=47  Identities=17%  Similarity=0.144  Sum_probs=28.0

Q ss_pred             hhhhh---hh-CchHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhh
Q psy12153         49 GLLAD---RF-GRRVIMLISFYGQGAISIAIVYNRS-FPVYLILRTMQGFFV   95 (236)
Q Consensus        49 g~l~D---r~-Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~   95 (236)
                      +.++|   ++ ||.+-++++.++++++.+...+... .+.+..+-++.+++.
T Consensus        44 ~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~   95 (704)
T TIGR01666        44 AALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGF   95 (704)
T ss_pred             hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            44454   44 6777788888888877777765444 444444444444433

This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=81.06  E-value=2  Score=40.49  Aligned_cols=54  Identities=9%  Similarity=0.100  Sum_probs=40.8

Q ss_pred             eeeeeeecCcchhHHHHHHHHH-HHHhhhhhhhhhhhhhC--chHHHHHHHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFL-GVILGSIPAGLLADRFG--RRVIMLISFYGQGAISIA   74 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~l~Dr~G--rr~~l~~~~~~~~~~~~~   74 (236)
                      .++++   +..+.+++.+...+ +.+++.+++|+++||++  .|+.+.++.++..++.+.
T Consensus       359 ~~~g~---s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       359 NQYGI---SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHcCC---cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            35777   88888988887776 67899999999999998  456666666666555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3880|consensus

Probab=81.01  E-value=9.5  Score=32.92  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=56.0

Q ss_pred             HHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHH
Q psy12153         74 AIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSL  153 (236)
Q Consensus        74 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  153 (236)
                      +..+.++.+..++.-+.-|+-.|..+...+--+.+-.++++|                  -.+++....+-.+|..++.+
T Consensus       335 ~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~r------------------Efamsavs~sDS~Gi~lA~~  396 (409)
T KOG3880|consen  335 WYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVR------------------EFAMSAVSISDSIGIFLAGL  396 (409)
T ss_pred             HHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHH------------------HHhHhhheecchhhHHHHHH
Confidence            334577888888888888988788887777777776777788                  89999999999999999988


Q ss_pred             HHHhcchh
Q psy12153        154 VSYWFPNW  161 (236)
Q Consensus       154 i~~~~~~w  161 (236)
                      ++..+.+|
T Consensus       397 lalplh~~  404 (409)
T KOG3880|consen  397 LALPLHNW  404 (409)
T ss_pred             Hhccchhh
Confidence            88776555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	9e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-05

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 33  VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
           V+  Y L   +  +  G ++DR GRR ++L+        ++  V   S  V +    MQG
Sbjct: 40  VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99

Query: 93  F 93
            
Sbjct: 100 M 100

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 28/164 (17%)

Query: 33  VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI----VYNRSFPVYLILR 88
            ++   +         G ++DR   RV +        A+ + +        S  V  +L 
Sbjct: 67  ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126

Query: 89  TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAW-VTEICWTVG 147
            + G+F QG+           +P   R  +  +      +  + R G    V      VG
Sbjct: 127 FLCGWF-QGMG----------WPPCGRT-MVHW------WSQKER-GGIVSVWNCAHNVG 167

Query: 148 LVMLSLVSYW----FPNWRDAELVTSLPFVGFSLFYVWFIPESP 187
             +  L+       F +W  A  + +   +  +LF    + ++P
Sbjct: 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 16  PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF---GRRVIMLISFYGQGA-- 70
           P  L  + H     ++    LY    I G++  G ++D+     R    +          
Sbjct: 276 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335

Query: 71  ISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVAT 120
           I   +    +  V +I   + GF + G         +EL P +   G A 
Sbjct: 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK-AAGTAA 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.88
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.79
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.78
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.77
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.73
2xut_A	524	Proton/peptide symporter family protein; transport	99.65
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.51
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.33
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.31
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.17
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.12
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.11
2xut_A	524	Proton/peptide symporter family protein; transport	98.63
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.31

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.88  E-value=2.1e-22  Score=178.51  Aligned_cols=163  Identities=21%  Similarity=0.291  Sum_probs=142.5

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH------------------HhccHHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV------------------YNRSFPVYLIL   87 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~   87 (236)
                      +..+.+++.+.+.+|..+|++++|+++||+|||++++++.++..++.++++                  .++|++.++++
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  132 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY  132 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence            456678999999999999999999999999999999999999999999888                  47899999999


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--------
Q psy12153         88 RTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--------  159 (236)
Q Consensus        88 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--------  159 (236)
                      |+++|++.|+..+....+++|+.|+++|                  ++..+..+.+..+|.++++.++....        
T Consensus       133 R~l~G~g~G~~~~~~~~~i~E~~p~~~r------------------g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  194 (491)
T 4gc0_A          133 RIIGGIGVGLASMLSPMYIAELAPAHIR------------------GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWL  194 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCGGGH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHhh------------------hhhHHhhhhhhhhhhhhhhhcchhhccccccccc
Confidence            9999999999999999999999999999                  99999999999999999888776542        


Q ss_pred             ---hhHHHHHHHHhHHHHHHHHHHhhcccchhHHHhcCCHhHHHHHHHHhh
Q psy12153        160 ---NWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDES  207 (236)
Q Consensus       160 ---~w~~~~~i~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~  207 (236)
                         .||..+.+..+.. +..++..+++||||+|...+++.+++.+.+++..
T Consensus       195 ~~~~~~~~~~~~~~~~-~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~  244 (491)
T 4gc0_A          195 NTDGWRYMFASECIPA-LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM  244 (491)
T ss_dssp             TTTHHHHHHHTTHHHH-HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhhHHHhhhhhhhh-hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence               4676766666665 6667778889999999999999888777665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.79  E-value=2.8e-18  Score=149.52  Aligned_cols=152  Identities=9%  Similarity=0.089  Sum_probs=133.0

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHH
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI---VYNRSFPVYLILRTMQG   92 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g   92 (236)
                      +.+++++   +..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.++.   ...++++.+++.|++.|
T Consensus        52 ~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  128 (438)
T 3o7q_A           52 FQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA  128 (438)
T ss_dssp             HHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            4567888   99999999999999999999999999999999999999999999999998   78899999999999999


Q ss_pred             HhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----h--------
Q psy12153         93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----N--------  160 (236)
Q Consensus        93 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~--------  160 (236)
                      ++.+...+....++.|++|+++|                  ++..+..+....+|..+++.++..+.    +        
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  190 (438)
T 3o7q_A          129 AGLGCLETAANPFVTVLGPESSG------------------HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD  190 (438)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSTTH------------------HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred             hhHHHhhhhHHHHHHHHcCchhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            99999999999999999999999                  99999999999999999999887763    2        


Q ss_pred             -----------------hHHHHHHHHhHHHHHHHHHHh-hcccchh
Q psy12153        161 -----------------WRDAELVTSLPFVGFSLFYVW-FIPESPL  188 (236)
Q Consensus       161 -----------------w~~~~~i~~~~~~~~~~~~~~-~~pet~~  188 (236)
                                       ||+.|++.++...+..++..+ ..||+++
T Consensus       191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS  236 (438)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred             cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence                             999998777766444443333 3566653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.78  E-value=3.4e-19  Score=155.78  Aligned_cols=152  Identities=16%  Similarity=0.130  Sum_probs=138.6

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHH
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY----NRSFPVYLILRTMQ   91 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~   91 (236)
                      +.+++ +   +..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.++.++    .++++.+++.|++.
T Consensus        54 ~~~~~-~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  129 (451)
T 1pw4_A           54 LVEQG-F---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC  129 (451)
T ss_dssp             TTSST-T---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred             HHHHh-c---cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence            34566 6   8899999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---h-hHHHHHH
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---N-WRDAELV  167 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~-w~~~~~i  167 (236)
                      |++.+...+...+++.|++|+++|                  ++..+..+....+|..+++.+++.+.   + ||+.|++
T Consensus       130 G~~~~~~~~~~~~~i~~~~~~~~r------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~  191 (451)
T 1pw4_A          130 GWFQGMGWPPCGRTMVHWWSQKER------------------GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  191 (451)
T ss_dssp             HHHHHHTHHHHHHHHHTTCTTTHH------------------HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             HHHhhhccchHHHHHHHHCCchhh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999999999999999                  99999999999999999999987742   6 9999999


Q ss_pred             HHhHHHHHHHHHHhhcccchhH
Q psy12153        168 TSLPFVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       168 ~~~~~~~~~~~~~~~~pet~~~  189 (236)
                      .+++.++..++..+++||+|+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          192 PAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             HHHHHHHHHHHHHHHCCCSSTT
T ss_pred             HHHHHHHHHHHHHhhccCCHhh
Confidence            9888866677777888998764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.77  E-value=8.5e-19  Score=150.27  Aligned_cols=153  Identities=18%  Similarity=0.183  Sum_probs=138.8

Q ss_pred             ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy12153         16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFV   95 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   95 (236)
                      +.++++.   +..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.......++++.+++.|++.|++.
T Consensus        26 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  102 (375)
T 2gfp_A           26 MARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT  102 (375)
T ss_dssp             HHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3567788   9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153         96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF  172 (236)
Q Consensus        96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~  172 (236)
                      +...+....++.|++|+++|                  ++..+..+....+|..+++.+++.+.   +||+.|++.++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (375)
T 2gfp_A          103 GVGGVMARTLPRDLYERTQL------------------RHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC  164 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTSSC------------------CSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHCCHHHH------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            99999999999999999999                  99999999999999999999998875   7999999888887


Q ss_pred             HHHHHHHHhhcccchhH
Q psy12153        173 VGFSLFYVWFIPESPLW  189 (236)
Q Consensus       173 ~~~~~~~~~~~pet~~~  189 (236)
                      ++..+...+.+||+++.
T Consensus       165 ~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          165 AGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHCcccCCC
Confidence            55555566778987653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.73  E-value=5.3e-17  Score=143.85  Aligned_cols=143  Identities=16%  Similarity=0.043  Sum_probs=126.4

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADR-FGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG   97 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   97 (236)
                      |+|+   +..+.+++.+++.++..++++++|+++|| +|||++++++.++..++.++.+++++.+.+++.|++.|++.+.
T Consensus        48 ~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  124 (491)
T 4aps_A           48 DLHI---TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGF  124 (491)
T ss_dssp             SCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHH
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            4788   99999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHH
Q psy12153         98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVG  174 (236)
Q Consensus        98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~  174 (236)
                      ..+....++.|++|+++|                .|+...+..+...++|..++|.+++.+.   +||+.|++.++..++
T Consensus       125 ~~~~~~~~~~~~~~~~~~----------------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~  188 (491)
T 4aps_A          125 LKPNVSTLVGTLYDEHDR----------------RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI  188 (491)
T ss_dssp             HHHHHHHHHHHHSSSCTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHcCcccc----------------cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            999999999999999883                0177888888999999999999988874   799999988776634


Q ss_pred             HHHHHH
Q psy12153        175 FSLFYV  180 (236)
Q Consensus       175 ~~~~~~  180 (236)
                      ..++..
T Consensus       189 ~~~~~~  194 (491)
T 4aps_A          189 GLLVYY  194 (491)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.65  E-value=1.7e-15  Score=135.25  Aligned_cols=134  Identities=13%  Similarity=0.029  Sum_probs=120.1

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhhhhHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRF-GRRVIMLISFYGQGAISIAIVYNR-SFPVYLILRTMQGFFVQGLQNSTY  103 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~  103 (236)
                      +..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.++..+.+ +.+.+++.|++.|++.+...+...
T Consensus        52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  131 (524)
T 2xut_A           52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS  131 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence            899999999999999999999999999999 999999999999999999999998 999999999999999999999999


Q ss_pred             HHHHhhcCccccccccchhhhhhccccccchhhHHH---HHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHH
Q psy12153        104 TLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV---TEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSL  177 (236)
Q Consensus       104 ~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~  177 (236)
                      .++.|++|+++|                  +...+.   .+...++|..++|.+++.+.   +|++.|++.++..++..+
T Consensus       132 ~~~~~~~~~~~r------------------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  193 (524)
T 2xut_A          132 SFMGDQFDQSNK------------------SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV  193 (524)
T ss_dssp             HHHHHTCSTTTT------------------THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCccch------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            999999999988                  766665   88889999999998877663   799999988877633333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.51  E-value=5.3e-13  Score=117.95  Aligned_cols=153  Identities=16%  Similarity=0.052  Sum_probs=104.8

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHh-hhhhhH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN----RSFPVYLILRTMQGFF-VQGLQN  100 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~-~~~~~~  100 (236)
                      +............+...++.++.+++.||+|||+.++.+..+..++.+..+..    .+....++...+...+ ..+..+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4gc0_A          310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGP  389 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTH
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHH
Confidence            44555566677778888999999999999999999999888888777665532    1112222222221111 222334


Q ss_pred             HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhH
Q psy12153        101 STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---------NWRDAELVTSLP  171 (236)
Q Consensus       101 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---------~w~~~~~i~~~~  171 (236)
                      ..+.+.+|.+|++.|                  +...++......+++.+++.+.+.+.         ++...|++.+++
T Consensus       390 ~~~~~~~E~fPt~~R------------------~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~  451 (491)
T 4gc0_A          390 VCWVLLSEIFPNAIR------------------GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM  451 (491)
T ss_dssp             HHHHHHHHSSCTTTH------------------HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            455566666666666                  99999999999999999888776653         234567788888


Q ss_pred             HHHHHHHHHhhcccchhHHHhcCCHhHHHHH
Q psy12153        172 FVGFSLFYVWFIPESPLWKYTKNKIIDFEYL  202 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~  202 (236)
                      +++..++.++++|||      |++..|+.++
T Consensus       452 ~~~~~i~~~~~~PET------kg~tLeei~~  476 (491)
T 4gc0_A          452 GVLAALFMWKFVPET------KGKTLEELEA  476 (491)
T ss_dssp             HHHHHHHHHHHCCCC------TTCCHHHHGG
T ss_pred             HHHHHHHHHheecCC------CCCCHHHHHH
Confidence            867788888999999      6665554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.33  E-value=7.3e-12  Score=109.12  Aligned_cols=142  Identities=20%  Similarity=0.180  Sum_probs=109.1

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12153         28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLI  107 (236)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  107 (236)
                      ...++..++..++..++.++.++++||+|||+++..+.++.++.....++.++.+.+++...+.+++.+...+....++.
T Consensus       259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  338 (417)
T 2cfq_A          259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT  338 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466677777788889999999999999999999888888777766666777777777777777776666666677888


Q ss_pred             hhcCccccccccchhhhhhccccccchhhHHH-HHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHhhc
Q psy12153        108 ELFPTRWRIGVATYTLLIELFPTRWRIGVAWV-TEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWFI  183 (236)
Q Consensus       108 e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~~~  183 (236)
                      |.+|++.|                  +...+. .+....+|..++|.+.+.+.   ++...|.+.+++.++..++.+++.
T Consensus       339 ~~~p~~~~------------------g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  400 (417)
T 2cfq_A          339 SQFEVRFS------------------ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHSCHHHH------------------HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHCCHHHH------------------HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            88888888                  888887 47778899999998888764   567788887777745555555666


Q ss_pred             ccch
Q psy12153        184 PESP  187 (236)
Q Consensus       184 pet~  187 (236)
                      ||++
T Consensus       401 ~~~~  404 (417)
T 2cfq_A          401 SGPG  404 (417)
T ss_dssp             CCSC
T ss_pred             cCCC
Confidence            7653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.31  E-value=5.3e-11  Score=103.61  Aligned_cols=139  Identities=19%  Similarity=0.147  Sum_probs=114.7

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh--CchHHHHHHHHHHH-HHHHHHHHh--ccHHHHHHHHHHHHHh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF--GRRVIMLISFYGQG-AISIAIVYN--RSFPVYLILRTMQGFF   94 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~g~~   94 (236)
                      +++   +..+.++..+...++..++.++.|+++||+  |||+.+.++..+.. ++.+.....  .+.+...+..++.|++
T Consensus       283 ~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  359 (451)
T 1pw4_A          283 KHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL  359 (451)
T ss_dssp             SCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred             cCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            666   888899999999999999999999999999  99999888777666 555555544  3666677777888888


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHH-HHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTV-GLVMLSLVSYWFP---NWRDAELVTSL  170 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~i~~~~~---~w~~~~~i~~~  170 (236)
                      .+...+....++.|.+|++.|                  +...++.+....+ |..+++.+.+.+.   +|+..|++.++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  421 (451)
T 1pw4_A          360 IYGPVMLIGLHALELAPKKAA------------------GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  421 (451)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             HhchHHHHHHHHHHHhchhhh------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            888888888999999999999                  9999999999999 9999999888764   68888888887


Q ss_pred             HHHHHHHHH
Q psy12153        171 PFVGFSLFY  179 (236)
Q Consensus       171 ~~~~~~~~~  179 (236)
                      ..++..++.
T Consensus       422 ~~~~~~~~~  430 (451)
T 1pw4_A          422 GSILAVILL  430 (451)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            774443333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.17  E-value=8.1e-11  Score=103.95  Aligned_cols=143  Identities=9%  Similarity=-0.082  Sum_probs=108.0

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHH-----HHHHHHHHHHHHHHHh---------ccHHHHHHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIML-----ISFYGQGAISIAIVYN---------RSFPVYLILRTMQ   91 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~   91 (236)
                      +....++..+...++..++.++.++++||+|||+...     ++.++.+++..+....         .+.+.+.+..++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (491)
T 4aps_A          317 SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV  396 (491)
T ss_dssp             SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred             CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence            3345666777788888899999999999999986654     6666666666655543         2566677778888


Q ss_pred             HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHH
Q psy12153         92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTS  169 (236)
Q Consensus        92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~  169 (236)
                      |++.+...+....++.|..|++.|                  +...++......+|..+++.+.+.+.  ++...|.+.+
T Consensus       397 g~~~~~~~~~~~~~~~~~~p~~~~------------------g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~  458 (491)
T 4aps_A          397 ILGEMLISPVGLSVTTKLAPKAFN------------------SQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFG  458 (491)
T ss_dssp             HHHHHTTTTHHHHHHHHHTTTTCS------------------SSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTH
T ss_pred             HHHHHHHhHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            998888888889999999999999                  99999999999999999999988875  4566777777


Q ss_pred             hHHHHHHHHHHhhcccc
Q psy12153        170 LPFVGFSLFYVWFIPES  186 (236)
Q Consensus       170 ~~~~~~~~~~~~~~pet  186 (236)
                      +..++..++.+++.++.
T Consensus       459 ~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          459 LGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77755566666665654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.12  E-value=8.4e-10  Score=95.70  Aligned_cols=129  Identities=15%  Similarity=0.117  Sum_probs=104.4

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQ   99 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   99 (236)
                      +++   +..+.++..+...++..++.++.|+++||+|||+++.++.++..++.++....++.+..... ++.|++.+...
T Consensus       290 ~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~  365 (438)
T 3o7q_A          290 PGM---TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQY  365 (438)
T ss_dssp             TTC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHH
T ss_pred             CCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHH
Confidence            356   88889999999999999999999999999999999999999988888888887776654443 77888888888


Q ss_pred             HHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---h-hHHHHHHHHhHH
Q psy12153        100 NSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---N-WRDAELVTSLPF  172 (236)
Q Consensus       100 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~-w~~~~~i~~~~~  172 (236)
                      +....+..|.+|++ |                  +...+... ...+|..++|.+.+.+.   + ++..|++.++..
T Consensus       366 ~~~~~~~~~~~~~~-~------------------~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  422 (438)
T 3o7q_A          366 PTIFSLGIKNLGQD-T------------------KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_dssp             HHHHHHHHSSCGGG-H------------------HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred             HHHHHHHHhhcccc-c------------------cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            98899989999866 6                  66666665 45688888888887764   4 777777655544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.11  E-value=3.3e-12  Score=111.32  Aligned_cols=147  Identities=14%  Similarity=0.031  Sum_probs=90.9

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH---HHhccH-HHHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI---VYNRSF-PVYLILRTMQGF   93 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~g~   93 (236)
                      +++|+   +..+.+++.+.+.++..++++++|+++||+|||++++++..+..+.....   ...+.. ......+.+.++
T Consensus        36 ~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T 2cfq_A           36 DINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI  112 (417)
T ss_dssp             TTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred             HHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777   88999999999999999999999999999999999998877665422111   111111 012233444444


Q ss_pred             hhhhhhHHHHHHHHhhcCc--cccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHH
Q psy12153         94 FVQGLQNSTYTLLIELFPT--RWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTS  169 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~  169 (236)
                      +.+...+.......++.++  ++|                  +...+.......+|..++|.+++++.  +|+..|++.+
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~------------------~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~  174 (417)
T 2cfq_A          113 YLGFCFNAGAPAVEAFIEKVSRRS------------------NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGS  174 (417)
T ss_dssp             STTHHHHTTHHHHHHHHHHHHHHH------------------TCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTT
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhhc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            4433333333333334332  233                  55556665566677777777776654  6898888777


Q ss_pred             hHHHHHHHHHHhhc-ccc
Q psy12153        170 LPFVGFSLFYVWFI-PES  186 (236)
Q Consensus       170 ~~~~~~~~~~~~~~-pet  186 (236)
                      +.. +..++..++. ||+
T Consensus       175 ~~~-~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          175 GCA-LILAVLLFFAKTDA  191 (417)
T ss_dssp             TTT-TTHHHHSCSSCCCC
T ss_pred             HHH-HHHHHHHHHcCccc
Confidence            665 3333333444 444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.63  E-value=9.2e-08  Score=85.01  Aligned_cols=138  Identities=12%  Similarity=-0.031  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhh----hhhCc----hHHHHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHH
Q psy12153         31 AAVVTLYFLGVILGSIPAGLLA----DRFGR----RVIMLISFYGQGAISIAIVYN---------RSFPVYLILRTMQGF   93 (236)
Q Consensus        31 ~~~~~~~~l~~~~~~~~~g~l~----Dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~   93 (236)
                      ++......++..++.++.+.+.    ||.|+    ++.+.++.++.+++.++....         .+.+.+++..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            3333333344445555555543    44443    245666777777776666553         356667777888999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcch-----h-------
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPN-----W-------  161 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~-----w-------  161 (236)
                      +.+...+....++.|..|++.|                  +...++.+....+|..+++.+.+.+.+     |       
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~------------------g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~  479 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMK------------------GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS  479 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCC------------------TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHH------------------hHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence            9888889889999999999999                  999999999999999999999888753     3       


Q ss_pred             --HHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153        162 --RDAELVTSLPFVGFSLFYVWFIPES  186 (236)
Q Consensus       162 --~~~~~i~~~~~~~~~~~~~~~~pet  186 (236)
                        +..|++.+.+.++..++..++.++.
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (524)
T 2xut_A          480 VTAFQMFFFAGFAILAAIVFALYARSY  506 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence              2336666666644444444455554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.31  E-value=2e-07  Score=79.23  Aligned_cols=124  Identities=16%  Similarity=0.005  Sum_probs=91.2

Q ss_pred             eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHH-HHHHHH--HHHH--hccHHHHHHHHHHHHHh
Q psy12153         20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYG-QGAISI--AIVY--NRSFPVYLILRTMQGFF   94 (236)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~g~~   94 (236)
                      +|+   +..+.++..+...++..++.++.+++.||+||+.  ..+... ...+..  ....  .++.+.+.+..++.|++
T Consensus       230 ~g~---~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  304 (375)
T 2gfp_A          230 LGL---SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG  304 (375)
T ss_dssp             HHH---HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence            566   7788899999999999999999999999998833  222222 222111  1222  23566666777888998


Q ss_pred             hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHH
Q psy12153         95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELV  167 (236)
Q Consensus        95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i  167 (236)
                      .+...+....+..|..| ++|                  ++..+..+....+|..+++.+.+.+.   +++..+++
T Consensus       305 ~~~~~~~~~~~~~~~~p-~~~------------------g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          305 AGMLFPLATSGAMEPFP-FLA------------------GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHTSSTTHHHHHTHHH-HHH------------------HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHhCC-ccc------------------chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            88888888999999998 788                  99999999999999988887776663   34444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 33  VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV----YNRSFPVYLILR 88
            ++   +         G ++DR   RV +        A+ + +        S  V  +L 
Sbjct: 64  ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 123

Query: 89  TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTL-----------LIELFPTRWRIGVA 137
            + G+F           ++  +  + R G+ +              L+ L    W     
Sbjct: 124 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 183

Query: 138 WVTEICWTVGLVMLSLVSYWFPNWRD 163
               +     +++         +   
Sbjct: 184 AALYMPAFCAILVALFAFAMMRDTPQ 209

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 17/163 (10%), Positives = 38/163 (23%), Gaps = 10/163 (6%)

Query: 33  VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
           +     L  +L     GLL+D+ G R  +L    G   +          P+      +  
Sbjct: 48  IFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS 107

Query: 93  FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLS 152
                     +                      ++               C    L    
Sbjct: 108 IVGGIYLGFCFNAGAPAVEAFIE----------KVSRRSNFEFGRARMFGCVGWALGASI 157

Query: 153 LVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
           +   +  N +    + S   +  ++   +   ++P      N 
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA 200

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.79
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.43
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.29
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.14

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.3e-20  Score=157.08  Aligned_cols=151  Identities=15%  Similarity=0.129  Sum_probs=134.4

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN----RSFPVYLILRTMQGF   93 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~   93 (236)
                      +|+++   +..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.+..    ++++.+++.|++.|+
T Consensus        52 ~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  128 (447)
T d1pw4a_          52 VEQGF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW  128 (447)
T ss_dssp             TSSTT---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred             HHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Confidence            46788   99999999999999999999999999999999999999999999988888764    477889999999999


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWF----PNWRDAELVTS  169 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~----~~w~~~~~i~~  169 (236)
                      +.+...+....++.|++|+++|                  ++..++.+.+..+|..+++.+....    .+||+.+++.+
T Consensus       129 ~~~~~~~~~~~~i~~~~~~~~r------------------~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~  190 (447)
T d1pw4a_         129 FQGMGWPPCGRTMVHWWSQKER------------------GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA  190 (447)
T ss_dssp             HHHHTHHHHHHHHHTTCTTTHH------------------HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHhhcc------------------cccccccccccchhhhhhhhhhhhHhhhhhcccccchhhh
Confidence            9999999999999999999999                  9999999999999999888776654    37999999888


Q ss_pred             hHHHHHHHHHHhhcccchhH
Q psy12153        170 LPFVGFSLFYVWFIPESPLW  189 (236)
Q Consensus       170 ~~~~~~~~~~~~~~pet~~~  189 (236)
                      ++.++..++.+++.+|+|+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~  210 (447)
T d1pw4a_         191 FCAILVALFAFAMMRDTPQS  210 (447)
T ss_dssp             HHHHHHHHHHHHHCCCSSTT
T ss_pred             hhHHHHHHHHHHhcccchhh
Confidence            88877777788888887654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=9.8e-13  Score=109.47  Aligned_cols=143  Identities=20%  Similarity=0.183  Sum_probs=122.9

Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12153         26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTL  105 (236)
Q Consensus        26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  105 (236)
                      +....+.......++..++..+.+++.||+|||+.+.++.++.++..+.....++.+.+.+..++.|++.+...+....+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  336 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            45566777788888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCccccccccchhhhhhccccccchhhHHHH-HHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHh
Q psy12153        106 LIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVT-EICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVW  181 (236)
Q Consensus       106 ~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~  181 (236)
                      +.|.+|++.|                  ++..+.. +....+|..++|.+.+++.   +++..|++.+++.++..++..+
T Consensus       337 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         337 ITSQFEVRFS------------------ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHSCGGGH------------------HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999                  8888864 5667789999998887764   6888998888888666666666


Q ss_pred             hcccc
Q psy12153        182 FIPES  186 (236)
Q Consensus       182 ~~pet  186 (236)
                      .+++.
T Consensus       399 ~l~~~  403 (417)
T d1pv7a_         399 TLSGP  403 (417)
T ss_dssp             HSCCS
T ss_pred             hhcCC
Confidence            66654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2e-12  Score=107.54  Aligned_cols=152  Identities=13%  Similarity=0.001  Sum_probs=103.0

Q ss_pred             eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHH----HHHHHHHH
Q psy12153         18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYL----ILRTMQGF   93 (236)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~g~   93 (236)
                      +++|+   +..+.|++.+++.++..++++++|+++||+|||++++++..+..++........+.....    +.+.+.+.
T Consensus        36 ~~~g~---s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T d1pv7a_          36 DINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI  112 (417)
T ss_dssp             HHHCC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTT
T ss_pred             HccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence            45788   999999999999999999999999999999999999999988888888877766554433    33333333


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHhH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTSLP  171 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~~~  171 (236)
                      ..+...........+..+++.+                .+....+........+..+++.+++.+.  +|+..+......
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  176 (417)
T d1pv7a_         113 YLGFCFNAGAPAVEAFIEKVSR----------------RSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGC  176 (417)
T ss_dssp             TGGGGGTTHHHHHHHHHHHHHH----------------HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cccccccchhhcccccccchhh----------------hhHHHHHHHhhhhccccccccccccccccccccccccchhhH
Confidence            3333333333333333322211                0044556666677777778877777664  455566665655


Q ss_pred             HHHHHHHHHhhcccchh
Q psy12153        172 FVGFSLFYVWFIPESPL  188 (236)
Q Consensus       172 ~~~~~~~~~~~~pet~~  188 (236)
                      ..+..++..+..+|+++
T Consensus       177 ~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         177 ALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             HHHHHHHHHSSCCCSCS
T ss_pred             HHHHHHHHHHHhccccc
Confidence            55666777777777653

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=7.7e-10  Score=93.54  Aligned_cols=145  Identities=17%  Similarity=0.123  Sum_probs=104.7

Q ss_pred             eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHH
Q psy12153         19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY-----NRSFPVYLILRTMQGF   93 (236)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~   93 (236)
                      ..+.   +..+.++..++..++..++.++.|+++||++||+..........+.......     ..+.+...+..++.|+
T Consensus       279 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  355 (447)
T d1pw4a_         279 VKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF  355 (447)
T ss_dssp             BSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred             cccc---ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            4455   7888899999999999999999999999999876444333332222222221     3456666677778888


Q ss_pred             hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHH-HHHHHHHHHHhcc---hhHHHHHHHH
Q psy12153         94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTV-GLVMLSLVSYWFP---NWRDAELVTS  169 (236)
Q Consensus        94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~i~~~~~---~w~~~~~i~~  169 (236)
                      +.+...+....+..|.+|++.|                  +...++.+....+ |.+++|.+.+.+.   +|+..|++.+
T Consensus       356 ~~~~~~~~~~~~~~~~~p~~~~------------------g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~  417 (447)
T d1pw4a_         356 LIYGPVMLIGLHALELAPKKAA------------------GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  417 (447)
T ss_dssp             HHTHHHHHHHHHHHHTSCTTHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            8878888888999999999999                  9999988776666 5566787777653   7888888777


Q ss_pred             hHHHHHHHHHHhhcc
Q psy12153        170 LPFVGFSLFYVWFIP  184 (236)
Q Consensus       170 ~~~~~~~~~~~~~~p  184 (236)
                      ...++..++..++.+
T Consensus       418 ~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         418 GGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            766444444444433