Psyllid ID: psy12155


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------
MFFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRPVQVPHHKGRKRMHLGRKH
cEEEEccHHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccccccEEEcEEEccccccccccc
cEEEcccHHHHHHHHcccccccccccccccccEEEEcccccccEEEEcccccccHcccccEEccccccccEEEEEccc
mffafgspvgmFVNVrgidvlgeefefptcpkfynifhpfdpvayrieplivpamehvrpvqvphhkgrkrmhlgrkh
mffafgspvgmFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEhvrpvqvphhkgrkrmhlgrkh
MFFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRPVQVPHHKGRKRMHLGRKH
*FFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVR*******************
MFFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRPVQVPHHKGR*********
MFFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRPVQ****************
MFFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRPVQVPHHKGRKRMHLGRKH
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRPVQVPHHKGRKRMHLGRKH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query78 2.2.26 [Sep-21-2011]
O94830 711 Phospholipase DDHD2 OS=Ho yes N/A 0.935 0.102 0.635 2e-25
Q80Y98 699 Phospholipase DDHD2 OS=Mu yes N/A 0.935 0.104 0.621 4e-25
Q9Y6Y8 1000 SEC23-interacting protein no N/A 0.974 0.076 0.558 2e-22
Q6NZC7 998 SEC23-interacting protein no N/A 0.974 0.076 0.545 1e-21
P87109 757 Probable phospholipase C2 yes N/A 0.846 0.087 0.352 1e-10
O46606 875 Phospholipase DDHD1 OS=Bo no N/A 0.794 0.070 0.432 5e-09
Q80YA3 547 Phospholipase DDHD1 OS=Mu no N/A 0.794 0.113 0.432 5e-09
Q8NEL9 900 Phospholipase DDHD1 OS=Ho no N/A 0.794 0.068 0.432 5e-09
P43125 1259 Protein retinal degenerat no N/A 0.833 0.051 0.384 9e-09
O35954 1243 Membrane-associated phosp no N/A 0.846 0.053 0.382 1e-08
>sp|O94830|DDHD2_HUMAN Phospholipase DDHD2 OS=Homo sapiens GN=DDHD2 PE=1 SV=2 Back     alignment and function desciption
 Score =  114 bits (285), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/74 (63%), Positives = 60/74 (81%), Gaps = 1/74 (1%)

Query: 1   MFFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRP 60
           +FFAFGSP+GMF+ VRG+  +   + FPTC  F+NI+HPFDPVAYRIEP++VP +E   P
Sbjct: 501 IFFAFGSPIGMFLTVRGLKRIDPNYRFPTCKGFFNIYHPFDPVAYRIEPMVVPGVE-FEP 559

Query: 61  VQVPHHKGRKRMHL 74
           + +PHHKGRKRMHL
Sbjct: 560 MLIPHHKGRKRMHL 573




Phospholipase that hydrolyzes preferentially phosphatidic acid and phosphatidylethanolamine. May be involved in the maintenance of the endoplasmic reticulum and/or Golgi structures.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q80Y98|DDHD2_MOUSE Phospholipase DDHD2 OS=Mus musculus GN=Ddhd2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Y6Y8|S23IP_HUMAN SEC23-interacting protein OS=Homo sapiens GN=SEC23IP PE=1 SV=1 Back     alignment and function description
>sp|Q6NZC7|S23IP_MOUSE SEC23-interacting protein OS=Mus musculus GN=Sec23ip PE=1 SV=2 Back     alignment and function description
>sp|P87109|YDK2_SCHPO Probable phospholipase C20G8.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G8.02 PE=3 SV=1 Back     alignment and function description
>sp|O46606|DDHD1_BOVIN Phospholipase DDHD1 OS=Bos taurus GN=DDHD1 PE=1 SV=1 Back     alignment and function description
>sp|Q80YA3|DDHD1_MOUSE Phospholipase DDHD1 OS=Mus musculus GN=Ddhd1 PE=2 SV=1 Back     alignment and function description
>sp|Q8NEL9|DDHD1_HUMAN Phospholipase DDHD1 OS=Homo sapiens GN=DDHD1 PE=1 SV=2 Back     alignment and function description
>sp|P43125|RDGB_DROME Protein retinal degeneration B OS=Drosophila melanogaster GN=rdgB PE=1 SV=2 Back     alignment and function description
>sp|O35954|PITM1_MOUSE Membrane-associated phosphatidylinositol transfer protein 1 OS=Mus musculus GN=Pitpnm1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query78
193718441 809 PREDICTED: phospholipase DDHD2-like [Acy 0.974 0.093 0.75 5e-30
380023609 1408 PREDICTED: uncharacterized protein LOC10 0.961 0.053 0.746 2e-28
195577468 522 GD22438 [Drosophila simulans] gi|1941906 0.974 0.145 0.723 4e-28
320544647 663 CG8552, isoform B [Drosophila melanogast 0.974 0.114 0.723 6e-28
328792812 1442 PREDICTED: hypothetical protein LOC40860 0.974 0.052 0.736 1e-27
328792810 1430 PREDICTED: hypothetical protein LOC40860 0.974 0.053 0.736 2e-27
307179816 1416 SEC23-interacting protein [Camponotus fl 0.974 0.053 0.710 2e-27
307211672 1445 Phospholipase DDHD2 [Harpegnathos saltat 0.974 0.052 0.710 5e-27
189233631 1258 PREDICTED: similar to sec-23 interacting 0.974 0.060 0.697 5e-27
195052883 1981 GH13095 [Drosophila grimshawi] gi|193900 0.974 0.038 0.723 6e-27
>gi|193718441|ref|XP_001950294.1| PREDICTED: phospholipase DDHD2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/76 (75%), Positives = 63/76 (82%)

Query: 2   FFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRPV 61
           FF FGSP+GMFV VRGI+ LGE F+FPTCP F NIFHP+DPVAYRIEPLI  A E++ P 
Sbjct: 553 FFGFGSPIGMFVTVRGIESLGENFKFPTCPGFLNIFHPYDPVAYRIEPLINAAFENIPPF 612

Query: 62  QVPHHKGRKRMHLGRK 77
           QVPHHKGRKRMHL  K
Sbjct: 613 QVPHHKGRKRMHLELK 628




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023609|ref|XP_003695610.1| PREDICTED: uncharacterized protein LOC100872424 [Apis florea] Back     alignment and taxonomy information
>gi|195577468|ref|XP_002078592.1| GD22438 [Drosophila simulans] gi|194190601|gb|EDX04177.1| GD22438 [Drosophila simulans] Back     alignment and taxonomy information
>gi|320544647|ref|NP_001188714.1| CG8552, isoform B [Drosophila melanogaster] gi|320544649|ref|NP_001188715.1| CG8552, isoform C [Drosophila melanogaster] gi|318068338|gb|ADV36964.1| CG8552, isoform B [Drosophila melanogaster] gi|318068339|gb|ADV36965.1| CG8552, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|328792812|ref|XP_392149.4| PREDICTED: hypothetical protein LOC408607 isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|328792810|ref|XP_003251782.1| PREDICTED: hypothetical protein LOC408607 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|307179816|gb|EFN68003.1| SEC23-interacting protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307211672|gb|EFN87693.1| Phospholipase DDHD2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|189233631|ref|XP_001812899.1| PREDICTED: similar to sec-23 interacting protein P125 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195052883|ref|XP_001993389.1| GH13095 [Drosophila grimshawi] gi|193900448|gb|EDV99314.1| GH13095 [Drosophila grimshawi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query78
FB|FBgn0031990 2016 CG8552 [Drosophila melanogaste 0.974 0.037 0.723 5e-26
UNIPROTKB|B3KXB5 330 DDHD2 "cDNA FLJ45096 fis, clon 0.935 0.221 0.635 1.6e-24
UNIPROTKB|H0YF17 213 DDHD2 "Phospholipase DDHD2" [H 0.935 0.342 0.635 1.6e-24
UNIPROTKB|F1RZJ5 715 DDHD2 "Uncharacterized protein 0.935 0.102 0.635 1.2e-23
UNIPROTKB|F1NLG4 692 DDHD2 "Uncharacterized protein 0.974 0.109 0.636 1.5e-23
UNIPROTKB|F1MSS2 708 DDHD2 "Uncharacterized protein 0.935 0.103 0.635 1.5e-23
UNIPROTKB|O94830 711 DDHD2 "Phospholipase DDHD2" [H 0.935 0.102 0.635 1.6e-23
MGI|MGI:1919358 699 Ddhd2 "DDHD domain containing 0.935 0.104 0.621 4.1e-23
ZFIN|ZDB-GENE-030131-5259 977 sec23ip "SEC23 interacting pro 0.961 0.076 0.605 3.3e-22
UNIPROTKB|F1PQ80 1005 SEC23IP "Uncharacterized prote 0.974 0.075 0.571 7.2e-22
FB|FBgn0031990 CG8552 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 310 (114.2 bits), Expect = 5.0e-26, P = 5.0e-26
 Identities = 55/76 (72%), Positives = 61/76 (80%)

Query:     2 FFAFGSPVGMFVNVRGIDVLGEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRPV 61
             FFA GSP+GMFV +RGID LG +F  PTCP FYNIFHPFDPVAYRIE L+ P M  +RPV
Sbjct:  1761 FFALGSPIGMFVTIRGIDKLGLDFHLPTCPGFYNIFHPFDPVAYRIEALVNPDMNGIRPV 1820

Query:    62 QVPHHKGRKRMHLGRK 77
              +PHHKGRKRMHL  K
Sbjct:  1821 LIPHHKGRKRMHLELK 1836




GO:0008970 "phosphatidylcholine 1-acylhydrolase activity" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|B3KXB5 DDHD2 "cDNA FLJ45096 fis, clone BRAWH3030910, highly similar to Homo sapiens DDHD domain containing 2 (DDHD2), mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0YF17 DDHD2 "Phospholipase DDHD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZJ5 DDHD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLG4 DDHD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MSS2 DDHD2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O94830 DDHD2 "Phospholipase DDHD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919358 Ddhd2 "DDHD domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5259 sec23ip "SEC23 interacting protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQ80 SEC23IP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q80Y98DDHD2_MOUSE3, ., 1, ., 1, ., -0.62160.93580.1044yesN/A
O94830DDHD2_HUMAN3, ., 1, ., 1, ., -0.63510.93580.1026yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query78
pfam02862 219 pfam02862, DDHD, DDHD domain 8e-35
COG1511780 COG1511, COG1511, Predicted membrane protein [Func 3e-04
>gnl|CDD|217255 pfam02862, DDHD, DDHD domain Back     alignment and domain information
 Score =  117 bits (294), Expect = 8e-35
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 2  FFAFGSPVGMFVNVRGIDVLG----------EEFEFPTCPKFYNIFHPFDPVAYRIEPLI 51
          FFA GSP+G+F+ +RG ++              +  P C   YNIFHP DPVAYR+EPL+
Sbjct: 8  FFAVGSPLGLFLLLRGTNLGARSLSYVAGEDGTYGCPACKNLYNIFHPTDPVAYRLEPLV 67

Query: 52 VPAMEHVRPVQVPHHKGRKRMHLGRKH 78
           P   +++PV +PH K  K   L    
Sbjct: 68 DPEYANLKPVLIPHAKKSKLGALELLE 94


The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site. The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases. It has been shown that this domain is found in a longer C terminal region that binds to PYK2 tyrosine kinase. These proteins have been called N-terminal domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests that this region is involved in functionally important interactions in other members of this family. Length = 219

>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 78
PF02862 227 DDHD: DDHD domain; InterPro: IPR004177 The DDHD do 100.0
KOG2308|consensus 741 99.97
>PF02862 DDHD: DDHD domain; InterPro: IPR004177 The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site Back     alignment and domain information
Probab=100.00  E-value=5.6e-35  Score=205.14  Aligned_cols=76  Identities=46%  Similarity=0.970  Sum_probs=70.3

Q ss_pred             CEEeecChHHHHHHhhCCccC-----------CCcccCCCcCceeeeccCCCccccccccccccccccCCCeeecccCCc
Q psy12155          1 MFFAFGSPVGMFVNVRGIDVL-----------GEEFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAMEHVRPVQVPHHKGR   69 (78)
Q Consensus         1 nlF~~GSPlg~fl~lr~~~~~-----------~~~~~~p~c~~~yNIfhp~DPvAyRlEPli~~~~~~~~P~~iP~~~~~   69 (78)
                      |||++|||||+||++||....           +..+.+|+|.|+||||||+|||||||||||+++|++++|+.||+++++
T Consensus         7 ~lF~~GSPlg~fl~lr~~~~~~~~~~~~~~~~~~~~~~p~~~~~yNifhp~DPvAyRlEPli~~~~~~~~P~~ip~~~~~   86 (227)
T PF02862_consen    7 NLFLVGSPLGLFLTLRGAQIGARSASEYVTDEGSFYPCPACRRIYNIFHPYDPVAYRLEPLIDPRYADIKPVSIPRFKGG   86 (227)
T ss_pred             eEEEeCCCHHHHHHHhCccccccccccccccccccccCCccccceeeeecCChHHHhHHHHHhhhhccCCCeeccccccc
Confidence            799999999999999998743           236889999999999999999999999999999999999999999999


Q ss_pred             ceeeeee
Q psy12155         70 KRMHLGR   76 (78)
Q Consensus        70 ~r~h~~~   76 (78)
                      ++.|.++
T Consensus        87 ~~~~~~~   93 (227)
T PF02862_consen   87 KLGHYES   93 (227)
T ss_pred             Ccccccc
Confidence            9988765



The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases.; GO: 0046872 metal ion binding

>KOG2308|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00