Psyllid ID: psy12177

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MFQGKLVVADMHVQMHAPGLVSTTNLCNIPYPYSQTVAPTMEEYLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT
Secondary Structure (PSIPRED)
cccccEEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHccccEEcccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcEEEccccccEcccccccccccccccccccHHHHHHHEEEEccccccHHHccccccccHHHHcHEHHHHHcccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFQGKLVVADMHvqmhapglvsttnlcnipypysqtvaPTMEEYLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVggyeqftqETGTEKLIRKfkenplvpigcvatsaalgVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGliytayqt
Flexible Loop (DISEMBL)
MFQGKLVVADMHVQMHAPGLVSTTNLCNIPYPYSQTVAPTMEEYLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT
Low Complexity Region (SEG)
MFQGKLVVADMHVQMHAPGLVSTTNLCNIPYPYSQTVAPTMEEYLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT
Disordered region (IsUnstruct)
*****LVVADMHVQMHAPGLVSTTNLCNIPYPYSQTVAPTMEEYLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAY**
Disordered Region (DISOPRED)
****KLVVADMHVQMHAPGLVSTTNLCNIPYPYSQTVAPTMEEYLKTVEIKNFYTLGPVMA************************************LIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQ*
Disordered Region (DISEMBL)
MFQGKLVVADMHVQMHAPGLVSTTNLCNIPYPYSQTVAPTMEEYLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT
Disordered Region (DISPRO)
*FQGKLVVADMHVQMHAPGLVSTTNLCNIPYPYSQTVAPTMEEYLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFQGKLVVADMHVQMHAPGLVSTTNLCNIPYPYSQTVAPTMEEYLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q9BW72	106	HIG1 domain family member	yes	N/A	0.441	0.679	0.569	6e-17
Q2GMG9	223	Respiratory supercomplex	N/A	N/A	0.490	0.358	0.512	8e-16
Q9CQJ1	106	HIG1 domain family member	yes	N/A	0.417	0.641	0.558	3e-15
B6H465	179	Respiratory supercomplex	yes	N/A	0.453	0.413	0.5	2e-13
A4RI25	213	Respiratory supercomplex	N/A	N/A	0.441	0.338	0.472	8e-13
A1CHC5	178	Respiratory supercomplex	N/A	N/A	0.435	0.398	0.478	1e-12
Q7S455	221	Respiratory supercomplex	N/A	N/A	0.441	0.325	0.458	2e-12
A6SSX6	175	Respiratory supercomplex	N/A	N/A	0.453	0.422	0.445	2e-12
Q875C2	218	Respiratory supercomplex	yes	N/A	0.453	0.339	0.466	4e-12
Q0CLP4	180	Respiratory supercomplex	N/A	N/A	0.435	0.394	0.464	4e-12

>sp|Q9BW72|HIG2A_HUMAN HIG1 domain family member 2A, mitochondrial OS=Homo sapiens GN=HIGD2A PE=1 SV=1

 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 92  ETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLA 151
           E+  EK +RK +ENP+VPIGC+AT+AAL  GLYS   G+ + SQ+MMRTR+ AQGFTV A
Sbjct: 33  ESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAA 92

Query: 152 LTGGLIYTAYQT 163
           +  GL  TA ++
Sbjct: 93  ILLGLAVTAMKS 104

Homo sapiens (taxid: 9606)

>sp|Q2GMG9|RCF1_CHAGB Respiratory supercomplex factor 1, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RCF1 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 50/80 (62%)

Query: 81  LQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRT 140
           L  G    F  E+G++K+IRK KE PLVPIGC+ T AA      +M+ GD    Q M R 
Sbjct: 9   LTWGPRRDFYNESGSQKIIRKLKEEPLVPIGCILTIAAFTNAYRAMRRGDHHKVQRMFRA 68

Query: 141 RVVAQGFTVLALTGGLIYTA 160
           RV AQGFTVLA+ GG +Y A
Sbjct: 69  RVAAQGFTVLAMVGGGMYYA 88

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|Q9CQJ1|HIG2A_MOUSE HIG1 domain family member 2A OS=Mus musculus GN=Higd2a PE=2 SV=1

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 49/68 (72%)

Query: 96  EKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGG 155
           EK IRK +ENP+VPIGC+ T+AAL  GLY    G    SQ+MMRTR+ AQGFTV+A+  G
Sbjct: 37  EKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLG 96

Query: 156 LIYTAYQT 163
           L  +A ++
Sbjct: 97  LAASAMKS 104

Mus musculus (taxid: 10090)

>sp|B6H465|RCF1_PENCW Respiratory supercomplex factor 1, mitochondrial OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rcf1 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 45/74 (60%)

Query: 85  GYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVA 144
           G  QFT+ETG +K  R+ KE PLVP+GC AT  AL     SMK GD      M R R+ A
Sbjct: 13  GNPQFTEETGMQKFTRRLKEEPLVPLGCAATCYALYRAYRSMKSGDSVEMNRMFRARIYA 72

Query: 145 QGFTVLALTGGLIY 158
           Q FT++AL  G +Y
Sbjct: 73  QAFTLVALVAGGMY 86

Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) (taxid: 500485)

>sp|A4RI25|RCF1_MAGO7 Respiratory supercomplex factor 1, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RCF1 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 43/72 (59%)

Query: 87  EQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQG 146
           E F  E G +K+ RK K+ PLVP+GCV T AA      +M+ GD      M R R+ AQG
Sbjct: 24  EDFYNENGFQKIARKLKQEPLVPLGCVLTVAAFTGAYRAMRAGDHGRVNRMFRYRIAAQG 83

Query: 147 FTVLALTGGLIY 158
           FT+LA+  G IY
Sbjct: 84  FTILAMVAGGIY 95

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|A1CHC5|RCF1_ASPCL Respiratory supercomplex factor 1, mitochondrial OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=rcf1 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 44/71 (61%)

Query: 88  QFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGF 147
           QF +ET  +K  R+FKE PL+P+GC ATS AL     SMK GD      M R R+ AQ F
Sbjct: 15  QFKEETSLQKFRRRFKEEPLIPLGCAATSYALYRAYRSMKAGDSVEMNKMFRARIYAQFF 74

Query: 148 TVLALTGGLIY 158
           T++A+  G +Y
Sbjct: 75  TLIAVVAGGMY 85

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

>sp|Q7S455|RCF1_NEUCR Respiratory supercomplex factor 1, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rcf-1 PE=3 SV=2

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%)

Query: 89  FTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFT 148
           F  E G +K+ R+ +E PL+PIGC+AT AA      +M+ GD    Q M R RV AQ FT
Sbjct: 30  FYNENGFQKVSRRLREEPLIPIGCIATVAAFTGAYRAMRRGDHEQVQRMFRARVAAQAFT 89

Query: 149 VLALTGGLIYTA 160
           V+A+  G  Y A
Sbjct: 90  VVAMVAGSWYYA 101

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|A6SSX6|RCF1_BOTFB Respiratory supercomplex factor 1, mitochondrial OS=Botryotinia fuckeliana (strain B05.10) GN=rcf1 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%)

Query: 85  GYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVA 144
           G   F +E   +KL R+ KE PL+P+GC+ TS AL     S++ GD   +Q M R R+ A
Sbjct: 13  GDTDFYEENRWQKLTRRLKEEPLIPLGCILTSLALVGASRSIRAGDHNRTQRMFRARIYA 72

Query: 145 QGFTVLALTGGLIY 158
           QGFT+LA+  G +Y
Sbjct: 73  QGFTLLAMVAGSMY 86

Botryotinia fuckeliana (strain B05.10) (taxid: 332648)

>sp|Q875C2|RCF1_PODAN Respiratory supercomplex factor 1, mitochondrial OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=RCF1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 87  EQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQG 146
           + F  E G +K++R+ KE PLVPIGC+ T AA      +M+ GD    Q M R RV AQ 
Sbjct: 19  DDFYNENGFQKVLRRLKEEPLVPIGCLLTVAAFTNAYRAMRRGDHAKVQKMFRARVAAQA 78

Query: 147 FTVLAL-TGGLIYTA 160
           FTV+A+  GG+ Y A
Sbjct: 79  FTVVAMVAGGMYYQA 93

Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (taxid: 515849)

>sp|Q0CLP4|RCF1_ASPTN Respiratory supercomplex factor 1, mitochondrial OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rcf1 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 43/71 (60%)

Query: 88  QFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGF 147
           QF +ETG +K  R+ KE PL+P+GC AT  AL     SMK GD      M R R+ AQ F
Sbjct: 14  QFEEETGLQKFRRRLKEEPLIPLGCAATCYALYRAYRSMKAGDSVEMNRMFRARIYAQAF 73

Query: 148 TVLALTGGLIY 158
           T++A+  G +Y
Sbjct: 74  TLVAVVAGGMY 84

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
91090884	103	PREDICTED: similar to HIG1 domain family	0.558	0.883	0.515	1e-21
195448290	102	GK10064 [Drosophila willistoni] gi|19416	0.588	0.941	0.534	5e-21
195479187	102	GE15976 [Drosophila yakuba] gi|194188321	0.588	0.941	0.534	7e-21
195393908	102	GJ18698 [Drosophila virilis] gi|19415010	0.527	0.843	0.566	1e-20
18860015	102	CG9921, isoform A [Drosophila melanogast	0.588	0.941	0.524	1e-20
195351416	102	GM13407 [Drosophila sechellia] gi|195567	0.588	0.941	0.524	1e-20
194893861	102	GG19329 [Drosophila erecta] gi|190649604	0.588	0.941	0.534	2e-20
380016225	95	PREDICTED: HIG1 domain family member 2A-	0.546	0.936	0.505	3e-20
195040357	102	GH12463 [Drosophila grimshawi] gi|193900	0.588	0.941	0.524	6e-20
194770158	102	GF19615 [Drosophila ananassae] gi|190619	0.521	0.833	0.573	6e-20

>gi|91090884|ref|XP_973213.1| PREDICTED: similar to HIG1 domain family member 2A, putative [Tribolium castaneum] gi|270013233|gb|EFA09681.1| hypothetical protein TcasGA2_TC011809 [Tribolium castaneum]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 71/97 (73%), Gaps = 6/97 (6%)

Query: 60  MANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAAL 119
           MA +  + ++ E DW+ LQK+++ G       ET  EKL+RK KENP++PIGC+AT+ AL
Sbjct: 1   MAQRPLEADEMEFDWIQLQKEIRAG------DETRKEKLLRKIKENPMIPIGCLATTCAL 54

Query: 120 GVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGL 156
             GL+S + G+R++SQ MMRTR+VAQGFTV+AL  G+
Sbjct: 55  CYGLWSFRTGNRKMSQYMMRTRIVAQGFTVVALLAGI 91

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195448290|ref|XP_002071592.1| GK10064 [Drosophila willistoni] gi|194167677|gb|EDW82578.1| GK10064 [Drosophila willistoni]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 76/101 (75%), Gaps = 5/101 (4%)

Query: 60  MANKI-TQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAA 118
           M+NK+     +++LDW+ L++ L  G + +   ET  EKL RK KENPLVPIGC+AT+AA
Sbjct: 1   MSNKVQISLPEEDLDWIQLRQDL--GPHVEI--ETTKEKLQRKIKENPLVPIGCLATTAA 56

Query: 119 LGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYT 159
           L +GLY+ + G+R++SQ+MMRTR+ AQGFTVLAL  G++ T
Sbjct: 57  LTMGLYNFRTGNRKMSQLMMRTRIAAQGFTVLALVVGVVMT 97

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195479187|ref|XP_002100797.1| GE15976 [Drosophila yakuba] gi|194188321|gb|EDX01905.1| GE15976 [Drosophila yakuba]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 74/101 (73%), Gaps = 5/101 (4%)

Query: 60  MANKI-TQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAA 118
           M+NKI     ++ELDW+ L++ L  G   +   ET  EKL RK KENPLVP+GC+AT+AA
Sbjct: 1   MSNKIQVSLPEEELDWIQLRQDL--GPVAEV--ETTKEKLQRKIKENPLVPLGCLATTAA 56

Query: 119 LGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYT 159
           L  GLY+ + G+R++SQ+MMRTR+ AQGFTV+AL  G++ T
Sbjct: 57  LTAGLYNFRTGNRKMSQLMMRTRIAAQGFTVMALVVGVVMT 97

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195393908|ref|XP_002055594.1| GJ18698 [Drosophila virilis] gi|194150104|gb|EDW65795.1| GJ18698 [Drosophila virilis]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 68/90 (75%), Gaps = 4/90 (4%)

Query: 70  DELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLG 129
           ++LDW+ L++ L  G   +   ET  E+L+RK KENPLVPIGC+AT+AAL  GLY+ + G
Sbjct: 12  EDLDWIQLRQDL--GPVVEI--ETTKERLVRKIKENPLVPIGCLATTAALTAGLYNFRTG 67

Query: 130 DRRLSQMMMRTRVVAQGFTVLALTGGLIYT 159
           +RR+SQ MMRTR+ AQGFTVLAL  G++ T
Sbjct: 68  NRRMSQFMMRTRIAAQGFTVLALIVGVVMT 97

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18860015|ref|NP_573120.1| CG9921, isoform A [Drosophila melanogaster] gi|442616584|ref|NP_001259608.1| CG9921, isoform B [Drosophila melanogaster] gi|442616586|ref|NP_001259609.1| CG9921, isoform C [Drosophila melanogaster] gi|7293210|gb|AAF48593.1| CG9921, isoform A [Drosophila melanogaster] gi|17945340|gb|AAL48726.1| RE16337p [Drosophila melanogaster] gi|220948008|gb|ACL86547.1| CG9921-PA [synthetic construct] gi|220957272|gb|ACL91179.1| CG9921-PA [synthetic construct] gi|440216837|gb|AGB95450.1| CG9921, isoform B [Drosophila melanogaster] gi|440216838|gb|AGB95451.1| CG9921, isoform C [Drosophila melanogaster]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 74/101 (73%), Gaps = 5/101 (4%)

Query: 60  MANKI-TQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAA 118
           M+NKI     ++ELDW+ L++ L  G   +   ET  EKL RK KENPLVP+GC+AT+AA
Sbjct: 1   MSNKIEVSLPEEELDWIQLRQDL--GPVAEV--ETTKEKLQRKIKENPLVPLGCLATTAA 56

Query: 119 LGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYT 159
           L  GLY+ + G+R++SQ+MMR+R+ AQGFTV+AL  G++ T
Sbjct: 57  LTAGLYNFRTGNRKMSQLMMRSRIAAQGFTVMALVVGVVMT 97

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195351416|ref|XP_002042230.1| GM13407 [Drosophila sechellia] gi|195567090|ref|XP_002107105.1| GD15754 [Drosophila simulans] gi|194124073|gb|EDW46116.1| GM13407 [Drosophila sechellia] gi|194204504|gb|EDX18080.1| GD15754 [Drosophila simulans]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 74/101 (73%), Gaps = 5/101 (4%)

Query: 60  MANKI-TQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAA 118
           M+NKI     ++ELDW+ L++ L  G   +   ET  EKL RK KENPLVP+GC+AT+AA
Sbjct: 1   MSNKIQVSLPEEELDWIQLRQDL--GPVAEV--ETTKEKLQRKIKENPLVPLGCLATTAA 56

Query: 119 LGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYT 159
           L  GLY+ + G+R++SQ+MMR+R+ AQGFTV+AL  G++ T
Sbjct: 57  LTAGLYNFRTGNRKMSQLMMRSRIAAQGFTVMALVVGVVMT 97

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194893861|ref|XP_001977955.1| GG19329 [Drosophila erecta] gi|190649604|gb|EDV46882.1| GG19329 [Drosophila erecta]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 73/101 (72%), Gaps = 5/101 (4%)

Query: 60  MANKI-TQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAA 118
           M+NKI     ++ELDW+ L + L  G   +   ET  EKL RK KENPLVP+GC+AT+AA
Sbjct: 1   MSNKIQVSLPEEELDWIQLCQDL--GPVAEV--ETTKEKLQRKIKENPLVPLGCLATTAA 56

Query: 119 LGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYT 159
           L  GLY+ + G+R++SQ+MMRTR+ AQGFTV+AL  G++ T
Sbjct: 57  LTAGLYNFRTGNRKMSQLMMRTRIAAQGFTVMALVVGVVMT 97

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016225|ref|XP_003692088.1| PREDICTED: HIG1 domain family member 2A-like, partial [Apis florea]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 68/93 (73%), Gaps = 4/93 (4%)

Query: 65  TQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLY 124
             +E +ELDW++++ KL     + +T ET  EK+IRK KENP++P G +AT++AL  GLY
Sbjct: 7   NSKELNELDWISVRAKLN----DDYTSETLKEKMIRKVKENPIIPFGILATTSALSYGLY 62

Query: 125 SMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLI 157
           S  +G+ ++SQ+MMRTRV AQ FT+LA+ GG I
Sbjct: 63  SFYMGNNKMSQLMMRTRVGAQSFTLLAIIGGWI 95

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195040357|ref|XP_001991053.1| GH12463 [Drosophila grimshawi] gi|193900811|gb|EDV99677.1| GH12463 [Drosophila grimshawi]

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 72/101 (71%), Gaps = 5/101 (4%)

Query: 60  MANKI-TQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAA 118
           MANK       ++LDW+ L++ L  G   +   ET  E+L+RK KENPLVPIGC+AT+AA
Sbjct: 1   MANKSQVPLSAEDLDWIQLRQDL--GPVVEI--ETTKERLVRKIKENPLVPIGCLATTAA 56

Query: 119 LGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYT 159
           L  GLY+ + G+R++SQ+MMRTR+ AQGFTV+AL  G+  T
Sbjct: 57  LSAGLYNFRTGNRKMSQLMMRTRIAAQGFTVVALIVGVAMT 97

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194770158|ref|XP_001967164.1| GF19615 [Drosophila ananassae] gi|190619284|gb|EDV34808.1| GF19615 [Drosophila ananassae]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 67/89 (75%), Gaps = 4/89 (4%)

Query: 71  ELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGD 130
           ELDW+ L++ L  G   +   ET  EKL RK KENPLVPIGC+AT+AAL  GLY+ + G+
Sbjct: 13  ELDWIQLRQDL--GPIAEV--ETTKEKLQRKIKENPLVPIGCLATTAALTAGLYNFRTGN 68

Query: 131 RRLSQMMMRTRVVAQGFTVLALTGGLIYT 159
           R++SQ+MMR+R+ AQGFTVLAL  G++ T
Sbjct: 69  RKMSQLMMRSRIAAQGFTVLALIVGVVMT 97

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
RGD|1309691	106	Higd2a "HIG1 hypoxia inducible	0.417	0.641	0.565	4.8e-17
UNIPROTKB|Q9BW72	106	HIGD2A "HIG1 domain family mem	0.441	0.679	0.569	1.8e-16
UNIPROTKB|Q05AT5	106	HIGD2A "HIG1 domain family, me	0.411	0.632	0.582	9.8e-16
UNIPROTKB|F1NUW0	106	HIGD2A "Uncharacterized protei	0.435	0.669	0.569	2e-15
UNIPROTKB|I3LSP3	106	HIGD2A "Uncharacterized protei	0.411	0.632	0.552	3.3e-15
MGI|MGI:1914294	106	Higd2a "HIG1 domain family, me	0.417	0.641	0.558	5.4e-15
RGD|1586494	106	Higd2al1 "HIG1 hypoxia inducib	0.417	0.641	0.565	6.9e-15
ZFIN|ZDB-GENE-050417-119	130	higd2a "HIG1 hypoxia inducible	0.435	0.546	0.555	1.1e-14
UNIPROTKB|Q5ZJI8	95	HIGD1A "Uncharacterized protei	0.472	0.810	0.430	1.5e-12
UNIPROTKB|F1PA57	106	HIGD2A "Uncharacterized protei	0.386	0.594	0.539	1.5e-12

RGD|1309691 Higd2a "HIG1 hypoxia inducible domain family, member 2A" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 39/69 (56%), Positives = 48/69 (69%)

Query:    89 FTQETG-TEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGF 147
             +T   G  EK IRK +ENP+VPIGC+ T+AAL  GLY    G    SQ+MMRTR+ AQGF
Sbjct:    29 YTNPEGFKEKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGF 88

Query:   148 TVLALTGGL 156
             TV+A+  GL
Sbjct:    89 TVVAILLGL 97

GO:0005739 "mitochondrion" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=ISO

UNIPROTKB|Q9BW72 HIGD2A "HIG1 domain family member 2A, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query:    92 ETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLA 151
             E+  EK +RK +ENP+VPIGC+AT+AAL  GLYS   G+ + SQ+MMRTR+ AQGFTV A
Sbjct:    33 ESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAA 92

Query:   152 LTGGLIYTAYQT 163
             +  GL  TA ++
Sbjct:    93 ILLGLAVTAMKS 104

GO:0016021 "integral to membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

UNIPROTKB|Q05AT5 HIGD2A "HIG1 domain family, member 2A" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 39/67 (58%), Positives = 49/67 (73%)

Query:    90 TQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTV 149
             T E+  EK IRK +ENPLVPIGC+ T+AAL  GLY    G  + SQ+MMRTR+ AQGFT+
Sbjct:    31 TSESFKEKFIRKTRENPLVPIGCLGTAAALTYGLYCFHRGQSQRSQLMMRTRIAAQGFTI 90

Query:   150 LALTGGL 156
             +A+  GL
Sbjct:    91 VAILVGL 97

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NUW0 HIGD2A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 41/72 (56%), Positives = 50/72 (69%)

Query:    90 TQETG-TEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFT 148
             T + G  +K  RK +ENPLVP+GC+ T   L  GL S K G+ R SQ+MMR RVVAQGFT
Sbjct:    30 TADEGFADKFRRKTRENPLVPLGCLCTLGVLTYGLISFKRGNTRHSQLMMRARVVAQGFT 89

Query:   149 VLALTGGLIYTA 160
             V AL GG++ TA
Sbjct:    90 VAALLGGMVATA 101

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=IEA

UNIPROTKB|I3LSP3 HIGD2A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query:    90 TQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTV 149
             T E+  EK IRK +ENP+VPIGC+ T++AL  GLY    G  + SQ+MMRTR+ AQGFT+
Sbjct:    31 TSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCFHRGQSQRSQLMMRTRIAAQGFTI 90

Query:   150 LALTGGL 156
             +A+  GL
Sbjct:    91 VAILVGL 97

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1914294 Higd2a "HIG1 domain family, member 2A" [Mus musculus (taxid:10090)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 38/68 (55%), Positives = 49/68 (72%)

Query:    96 EKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGG 155
             EK IRK +ENP+VPIGC+ T+AAL  GLY    G    SQ+MMRTR+ AQGFTV+A+  G
Sbjct:    37 EKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLG 96

Query:   156 LIYTAYQT 163
             L  +A ++
Sbjct:    97 LAASAMKS 104

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=IMP

RGD|1586494 Higd2al1 "HIG1 hypoxia inducible domain family, member 2A-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 39/69 (56%), Positives = 48/69 (69%)

Query:    89 FTQETG-TEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGF 147
             +T   G  EK IRK +ENP+VPIGC+ T+AAL  GLY    G    SQ+MMRTR+ AQGF
Sbjct:    29 YTNPEGFKEKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGF 88

Query:   148 TVLALTGGL 156
             TV+A+  GL
Sbjct:    89 TVVAILLGL 97

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050417-119 higd2a "HIG1 hypoxia inducible domain family, member 2A" [Danio rerio (taxid:7955)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 40/72 (55%), Positives = 51/72 (70%)

Query:    90 TQETG-TEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFT 148
             T+E G  +K IRK KENP VPIGC+ T+ AL  GL + K G  R SQ++MRTR+ AQGFT
Sbjct:    54 TREEGFKDKFIRKTKENPFVPIGCLGTAGALIYGLGAFKQGKTRQSQLLMRTRIFAQGFT 113

Query:   149 VLALTGGLIYTA 160
             V+A+  G+  TA
Sbjct:   114 VVAIIVGVAATA 125

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5ZJI8 HIGD1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/79 (43%), Positives = 51/79 (64%)

Query:    86 YEQFTQETG-TEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVV 143
             Y ++  ET  T KL+RKFKE P VPIG    +  +G GLY +K  G+ ++S  ++  RV 
Sbjct:     9 YPEYETETSQTSKLLRKFKETPFVPIGMAGFAVVVGYGLYKLKHRGNTKMSLHLIHMRVA 68

Query:   144 AQGFTVLALTGGLIYTAYQ 162
             AQGF V A+T G++Y+ ++
Sbjct:    69 AQGFVVGAITCGVLYSMFR 87

GO:0016021 "integral to membrane" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|F1PA57 HIGD2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/63 (53%), Positives = 42/63 (66%)

Query:    90 TQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTV 149
             T E+  EK +RK  ENP+V IGC+ T+AAL  GLY    G     Q+MMRTR+ AQGFTV
Sbjct:    31 TPESFKEKFLRKTHENPMVSIGCLGTAAALTYGLYCFHQGQSHRLQLMMRTRIAAQGFTV 90

Query:   150 LAL 152
              A+
Sbjct:    91 AAI 93

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BW72	HIG2A_HUMAN	No assigned EC number	0.5694	0.4417	0.6792	yes	N/A
Q9CQJ1	HIG2A_MOUSE	No assigned EC number	0.5588	0.4171	0.6415	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	163
pfam04588	54	pfam04588, HIG_1_N, Hypoxia induced protein conser	6e-23

>gnl|CDD|203051 pfam04588, HIG_1_N, Hypoxia induced protein conserved region

 Score = 85.3 bits (212), Expect = 6e-23
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query: 102 FKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGG 155
            KENPLVPIGC+AT+ AL  GLY+M+ G+ ++SQ +MR RV AQGFTV AL  G
Sbjct: 1   VKENPLVPIGCLATAGALLAGLYNMRRGNSKMSQKLMRARVAAQGFTVAALVAG 54

This family is found in proteins thought to be involved in the response to hypoxia. Family members mostly come from diverse eukaryotic organisms however eubacterial members have been identified. This region is found at the N-terminus of the member proteins which are predicted to be transmembrane. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG4431|consensus	100		99.94
PF04588	54	HIG_1_N: Hypoxia induced protein conserved region;	99.84
PF11137	63	DUF2909: Protein of unknown function (DUF2909); In	93.28
PF12911	56	OppC_N: N-terminal TM domain of oligopeptide trans	92.79
smart00831	64	Cation_ATPase_N Cation transporter/ATPase, N-termi	81.29

>KOG4431|consensus

Probab=99.94  E-value=2.3e-27  Score=179.08  Aligned_cols=74  Identities=57%  Similarity=0.893  Sum_probs=70.9

Q ss_pred             ccCChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12177         90 TQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT  163 (163)
Q Consensus        90 ~~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~sfr-~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~yq~  163 (163)
                      ++++++||++||+||||||||||++|++++++|+|++| +||+++||+|||+||+||||||+||++|+.|++|+.
T Consensus        14 ed~~~~ekl~rk~kenP~VPlG~l~t~aal~~g~y~~r~rGn~~~sq~lmr~RVaAQgftV~AL~~G~~~~~~~e   88 (100)
T KOG4431|consen   14 EDMSQKEKLLRKAKENPLVPLGCLGTTAALTAGLYKFRSRGNSKMSQHLMRTRVAAQGFTVGALVLGLAYTMYKE   88 (100)
T ss_pred             chhhHHHHHHHHHHhCCCeeehHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence            45689999999999999999999999999999999999 999999999999999999999999999999998863

>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions

Probab=99.84  E-value=4.6e-22  Score=133.93  Aligned_cols=54  Identities=61%  Similarity=0.942  Sum_probs=44.8

Q ss_pred             HhhCCchHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12177        102 FKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGG  155 (163)
Q Consensus       102 ~kEnPLVpIG~laT~gaL~~Gl~sfr~Gn~~~SqKLMR~RV~AQg~TVaaLv~G  155 (163)
                      +||||++|||+++|+++|.+|+++|++||.+.||||||+||+|||+||++|++|
T Consensus         1 ~ke~plv~ig~~~~~~~l~~g~~~~~~g~~~~s~klmr~RV~aQ~~tv~~l~~G   54 (54)
T PF04588_consen    1 FKENPLVPIGMLATVGALAYGLYNFRRGNMKTSQKLMRARVYAQGLTVAALVGG   54 (54)
T ss_dssp             S-S--CHHHHHHHHHHHHHHHHHHHTSSS----SSSSS-SHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            589999999999999999999999999999999999999999999999999987

HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.

>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function

Probab=93.28  E-value=0.57  Score=33.09  Aligned_cols=54  Identities=19%  Similarity=0.108  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12177        107 LVPIGCVATSAALGVGLYSMK--LGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTA  160 (163)
Q Consensus       107 LVpIG~laT~gaL~~Gl~sfr--~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~  160 (163)
                      ++.+.+++.++.|..|++.+.  +|+.++.-|..-+||.+=...++.++.|.+.-.
T Consensus         4 ~iv~lll~ii~sL~saL~~l~kd~~~~~rm~~~L~~RV~lS~~l~~lil~~~~~G~   59 (63)
T PF11137_consen    4 LIVLLLLAIIASLFSALFFLVKDKGSSKRMVKALGRRVGLSALLFLLILIALYTGW   59 (63)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            466778889999999999995  456666667777899999999999998887644

>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C

Probab=92.79  E-value=0.34  Score=31.48  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=29.4

Q ss_pred             CChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q psy12177         92 ETGTEKLIRKFKENPLVPIGCVATSAALGVGLYS  125 (163)
Q Consensus        92 ET~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~s  125 (163)
                      +|.+.+++|++++||+..+|++..+..++.++..
T Consensus         2 ~s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~   35 (56)
T PF12911_consen    2 RSPWKDAWRRFRRNKLAVIGLIILLILVLLAIFA   35 (56)
T ss_pred             CCHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999988887777777665

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus

Probab=81.29  E-value=4.8  Score=26.35  Aligned_cols=40  Identities=18%  Similarity=0.226  Sum_probs=26.4

Q ss_pred             HHHHHhhcCCccccccCChHHHHHHHHhhCCchHHHHHHHH
Q psy12177         76 TLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATS  116 (163)
Q Consensus        76 q~re~~~~~~~~~~~~ET~~eKl~RK~kEnPLVpIG~laT~  116 (163)
                      +.|+..+.+..+.-..++++.++++.++ +|++.+-+++.+
T Consensus        18 ~r~~~~G~N~l~~~~~~s~~~~~l~~~~-~p~~~iL~~~a~   57 (64)
T smart00831       18 RRLERYGPNELPPPKKRSPLLRFLRQFH-NPLIYILLAAAV   57 (64)
T ss_pred             HHHHHhCCCCCCCCCCCCHHHHHHHHHH-hHHHHHHHHHHH
Confidence            5666677664444556789999998886 677666444433

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
2lom_A	93	Backbone Structure Of Human Membrane Protein Higd1a		9e-10
2lon_A	99	Backbone Structure Of Human Membrane Protein Higd1b		4e-06

>pdb|2LOM|A Chain A, Backbone Structure Of Human Membrane Protein Higd1a Length = 93

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 91  QETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTV 149
           +E    KLIRK KE P VP+G    +A +  GLY +K  G+ ++S  ++  RV AQGF V
Sbjct: 13  EEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVV 72
Query: 150 LALTGGLIYTAYQ 162
            A+T G+ Y+ Y+
Sbjct: 73  GAMTVGMGYSMYR 85

>pdb|2LON|A Chain A, Backbone Structure Of Human Membrane Protein Higd1b Length = 99

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 91  QETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTV 149
           ++  +EKL+RK +E+PLVPIG           +Y ++  G  ++S  ++ TRV AQ   V
Sbjct: 14  EDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAV 73
Query: 150 LALTGGLIYTAYQ 162
            A+  G +YT Y 
Sbjct: 74  GAIMLGAVYTMYS 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
2lom_A	93	HIG1 domain family member 1A; membrane protein, he	1e-31
2lon_A	99	HIG1 domain family member 1B; membrane protein, he	3e-29

>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens} Length = 93

 Score =  108 bits (271), Expect = 1e-31
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 89  FTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKL-GDRRLSQMMMRTRVVAQGF 147
             +E    KLIRK KE P VP+G    +A +  GLY +K  G+ ++S  ++  RV AQGF
Sbjct: 11  SYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGF 70

Query: 148 TVLALTGGLIYTAYQ 162
            V A+T G+ Y+ Y+
Sbjct: 71  VVGAMTVGMGYSMYR 85

>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens} Length = 99

 Score =  102 bits (255), Expect = 3e-29
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 89  FTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMKL-GDRRLSQMMMRTRVVAQGF 147
             ++  +EKL+RK +E+PLVPIG           +Y ++  G  ++S  ++ TRV AQ  
Sbjct: 12  DDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQAC 71

Query: 148 TVLALTGGLIYTAYQ 162
            V A+  G +YT Y 
Sbjct: 72  AVGAIMLGAVYTMYS 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
2lon_A	99	HIG1 domain family member 1B; membrane protein, he	99.9
2lom_A	93	HIG1 domain family member 1A; membrane protein, he	99.9

>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}

Probab=99.90  E-value=3e-29  Score=187.40  Aligned_cols=77  Identities=34%  Similarity=0.518  Sum_probs=73.2

Q ss_pred             cccccCChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12177         87 EQFTQETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT  163 (163)
Q Consensus        87 ~~~~~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~sfr-~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~yq~  163 (163)
                      |++++||++||++||++||||+||||++++++|++|+|+|+ +||.++||||||+||+||||||++|++|++|++|+.
T Consensus        10 ~~~~ees~~~K~~rk~ke~PlvpIg~l~~~~vl~~Gl~~~~~rG~~~~Sqklmr~RV~AQg~tV~al~~g~~ysm~~~   87 (99)
T 2lon_A           10 PPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYSD   87 (99)
Confidence            45777999999999999999999999999999999999995 999999999999999999999999999999999973

>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}

Probab=99.90  E-value=1.2e-28  Score=182.33  Aligned_cols=73  Identities=42%  Similarity=0.694  Sum_probs=70.8

Q ss_pred             cCChHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12177         91 QETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTAYQT  163 (163)
Q Consensus        91 ~ET~~eKl~RK~kEnPLVpIG~laT~gaL~~Gl~sfr-~Gn~~~SqKLMR~RV~AQg~TVaaLv~G~~~~~yq~  163 (163)
                      +||++||++||++||||+||||++|++++++|+|+|+ +||.++||||||+||+||||||++|++|++|++|+.
T Consensus        13 ~e~~~~K~~rk~ke~PlvpIg~~~~~~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys~~~~   86 (93)
T 2lom_A           13 EEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYRE   86 (93)
Confidence            6899999999999999999999999999999999997 899999999999999999999999999999999973

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00