Psyllid ID: psy12217

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MSILYAIPNTVSTLKFPELNNLSGARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEGVAY
ccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
ccEEEEcccccccccccccccccccHcccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
msilyaipntvstlkfpelnnlsgarvnatcgtlsknyhevrchpapdafnpcedlmgnwALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQrgmgcqmaGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAAlplfdvsnysktsiclpmkntnstdSAYLIFLLLFNGLAFWMICACYARMYssirggtegvay
MSILYAIPNTVSTLKFPELNNLSGARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEGVAY
MSILYAIPNTVSTLKFPELNNLSGARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFvaiaalvgnlavllvlISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEGVAY
**ILYAIPNTVSTLKFPELNNLSGARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIR********
*SILYAIPNTVSTLKFPELNNLSGARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSS***G******
MSILYAIPNTVSTLKFPELNNLSGARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEGVAY
*SILYAIPNTVSTLKFPELNNLSGARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRG*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MSILYAIPNTVSTLKFPELNNLSGARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEGVAY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
P30730 700 Lutropin-choriogonadotrop yes N/A 0.820 0.307 0.562 9e-72
Q90674 366 Lutropin-choriogonadotrop no N/A 0.812 0.581 0.577 9e-72
P22888 699 Lutropin-choriogonadotrop yes N/A 0.816 0.306 0.565 2e-71
O02721 676 Lutropin-choriogonadotrop no N/A 0.812 0.315 0.568 1e-70
Q28005 701 Lutropin-choriogonadotrop yes N/A 0.820 0.306 0.548 2e-70
P16235 700 Lutropin-choriogonadotrop yes N/A 0.816 0.305 0.551 3e-70
Q7ZTV5 693 Follicle-stimulating horm N/A N/A 0.820 0.310 0.553 7e-70
P16582 696 Lutropin-choriogonadotrop yes N/A 0.820 0.308 0.544 7e-69
Q28585538 Lutropin-choriogonadotrop N/A N/A 0.820 0.399 0.539 4e-68
P35376 695 Follicle-stimulating horm no N/A 0.824 0.310 0.523 3e-67
>sp|P30730|LSHR_MOUSE Lutropin-choriogonadotropic hormone receptor OS=Mus musculus GN=Lhcgr PE=2 SV=1 Back     alignment and function desciption
 Score =  270 bits (689), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 164/215 (76%)

Query: 41  VRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCN 100
           ++C P PDAFNPCED+MG   LRV +W + I A+ GNL VL VL++SR+++TVP+FLMCN
Sbjct: 345 LQCTPEPDAFNPCEDIMGYAFLRVLIWLINILAIFGNLTVLFVLLTSRYKLTVPRFLMCN 404

Query: 101 LAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVI 160
           L+FADFCMGLYL++IA +D ++ G Y+NHAI WQ G GC  AGF TVF+S LS++TLTVI
Sbjct: 405 LSFADFCMGLYLLLIASVDSQTKGQYYNHAIDWQTGSGCSAAGFFTVFASELSVYTLTVI 464

Query: 161 TCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNT 220
           T ERW+TITYA+ L+++L+L  A  IM+ GW++S  MA LPL  VS+Y K SICLPM   
Sbjct: 465 TLERWHTITYAVQLDQKLRLRHAIPIMLGGWIFSTLMATLPLVGVSSYMKVSICLPMDVE 524

Query: 221 NSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRG 255
           ++    Y++ +LL N +AF +ICACY R+Y +++ 
Sbjct: 525 STLSQVYILSILLLNAVAFVVICACYVRIYFAVQN 559
Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.
Mus musculus (taxid: 10090)
>sp|Q90674|LSHR_CHICK Lutropin-choriogonadotropic hormone receptor (Fragment) OS=Gallus gallus GN=LHCGR PE=2 SV=1 Back     alignment and function description
>sp|P22888|LSHR_HUMAN Lutropin-choriogonadotropic hormone receptor OS=Homo sapiens GN=LHCGR PE=1 SV=4 Back     alignment and function description
>sp|O02721|LSHR_CALJA Lutropin-choriogonadotropic hormone receptor OS=Callithrix jacchus GN=LHCGR PE=2 SV=1 Back     alignment and function description
>sp|Q28005|LSHR_BOVIN Lutropin-choriogonadotropic hormone receptor OS=Bos taurus GN=LHCGR PE=2 SV=1 Back     alignment and function description
>sp|P16235|LSHR_RAT Lutropin-choriogonadotropic hormone receptor OS=Rattus norvegicus GN=Lhcgr PE=1 SV=1 Back     alignment and function description
>sp|Q7ZTV5|FSHR_CAIMO Follicle-stimulating hormone receptor OS=Cairina moschata GN=FSHR PE=2 SV=1 Back     alignment and function description
>sp|P16582|LSHR_PIG Lutropin-choriogonadotropic hormone receptor OS=Sus scrofa GN=LHCGR PE=2 SV=1 Back     alignment and function description
>sp|Q28585|LSHR_SHEEP Lutropin-choriogonadotropic hormone receptor (Fragment) OS=Ovis aries GN=LHCGR PE=2 SV=1 Back     alignment and function description
>sp|P35376|FSHR_BOVIN Follicle-stimulating hormone receptor OS=Bos taurus GN=FSHR PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
328708954 731 PREDICTED: lutropin-choriogonadotropic h 0.908 0.325 0.726 7e-98
242018699 608 class A rhodopsin-like G-protein coupled 0.885 0.381 0.754 1e-92
391333790 652 PREDICTED: follicle-stimulating hormone 0.854 0.343 0.699 9e-88
270011054 775 hypothetical protein TcasGA2_TC009575, p 0.904 0.305 0.609 2e-84
189238879 890 PREDICTED: similar to leucine-rich trans 0.904 0.266 0.609 2e-84
241564173 363 ribosomal protein L31, putative [Ixodes 0.828 0.597 0.668 1e-79
321460227 786 hypothetical protein DAPPUDRAFT_290661 [ 0.889 0.296 0.618 1e-76
157105802 860 leucine-rich transmembrane protein [Aede 0.954 0.290 0.556 5e-76
170043092 841 leucine-rich transmembrane protein [Cule 0.896 0.279 0.587 4e-75
403182641 774 AAEL004399-PA, partial [Aedes aegypti] 0.870 0.294 0.598 5e-74
>gi|328708954|ref|XP_003243835.1| PREDICTED: lutropin-choriogonadotropic hormone receptor-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  362 bits (930), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 173/238 (72%), Positives = 202/238 (84%)

Query: 24  GARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLV 83
           G +V+  CG +SKNY EV+C+PAPDAFNPCEDLMGNW LRV+VW VA+AAL+GN+AVL V
Sbjct: 261 GTKVDVICGNVSKNYLEVKCYPAPDAFNPCEDLMGNWTLRVAVWIVAVAALLGNMAVLFV 320

Query: 84  LISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAG 143
           L+SSRFR+TVPKFLMCNLA ADFCMGLYL++IA+MD RSIG YFNHAI+WQRG+GCQ+AG
Sbjct: 321 LLSSRFRLTVPKFLMCNLAMADFCMGLYLLLIAVMDARSIGQYFNHAIFWQRGIGCQVAG 380

Query: 144 FLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLF 203
           FLTVFS +LS+FTL +IT ERWYTITYAIHLNRRLKL  +  IM VGW++S+ M ALPL 
Sbjct: 381 FLTVFSCMLSVFTLMIITGERWYTITYAIHLNRRLKLGASVNIMAVGWLFSVVMGALPLM 440

Query: 204 DVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEGVA 261
             S YSKTSICLPM N++  D  YL  LL FNG+AF +ICACYA+MYSSIRGG E VA
Sbjct: 441 GTSGYSKTSICLPMDNSSFADKVYLFSLLTFNGIAFVVICACYAKMYSSIRGGREAVA 498

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242018699|ref|XP_002429811.1| class A rhodopsin-like G-protein coupled receptor GPRfsh, putative [Pediculus humanus corporis] gi|212514829|gb|EEB17073.1| class A rhodopsin-like G-protein coupled receptor GPRfsh, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|391333790|ref|XP_003741293.1| PREDICTED: follicle-stimulating hormone receptor-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|270011054|gb|EFA07502.1| hypothetical protein TcasGA2_TC009575, partial [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189238879|ref|XP_973736.2| PREDICTED: similar to leucine-rich transmembrane protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|241564173|ref|XP_002401843.1| ribosomal protein L31, putative [Ixodes scapularis] gi|215499911|gb|EEC09405.1| ribosomal protein L31, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|321460227|gb|EFX71271.1| hypothetical protein DAPPUDRAFT_290661 [Daphnia pulex] Back     alignment and taxonomy information
>gi|157105802|ref|XP_001649032.1| leucine-rich transmembrane protein [Aedes aegypti] Back     alignment and taxonomy information
>gi|170043092|ref|XP_001849235.1| leucine-rich transmembrane protein [Culex quinquefasciatus] gi|167866512|gb|EDS29895.1| leucine-rich transmembrane protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|403182641|gb|EAT44221.2| AAEL004399-PA, partial [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
UNIPROTKB|F1NGD6 694 LHCGR "Lutropin-choriogonadotr 0.809 0.305 0.533 7.9e-62
UNIPROTKB|Q90674 366 LHCGR "Lutropin-choriogonadotr 0.809 0.579 0.533 7.9e-62
UNIPROTKB|E7ENI1 672 LHCGR "Lutropin-choriogonadotr 0.812 0.316 0.530 1.6e-61
UNIPROTKB|E9PDH1 637 LHCGR "Lutropin-choriogonadotr 0.812 0.334 0.530 1.6e-61
UNIPROTKB|P22888 699 LHCGR "Lutropin-choriogonadotr 0.812 0.304 0.530 1.6e-61
MGI|MGI:96783 700 Lhcgr "luteinizing hormone/cho 0.816 0.305 0.523 2.1e-61
UNIPROTKB|F1MMH0 639 LHCGR "Lutropin-choriogonadotr 0.816 0.334 0.514 9e-61
UNIPROTKB|Q28005 701 LHCGR "Lutropin-choriogonadotr 0.816 0.305 0.514 9e-61
UNIPROTKB|F1PKI7 704 LHCGR "Uncharacterized protein 0.816 0.303 0.523 1.2e-60
UNIPROTKB|F1NGD5 693 FSHR "Follicle-stimulating hor 0.809 0.305 0.528 1.9e-60
UNIPROTKB|F1NGD6 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 113/212 (53%), Positives = 151/212 (71%)

Query:    43 CHPAPDAFNPCEDLMGNWALRVSVWFXXXXXXXXXXXXXXXXISSRFRMTVPKFLMCNLA 102
             C P PDAFNPCED++G   LRV +WF                I+S +++TVP+FLMCNL+
Sbjct:   368 CTPEPDAFNPCEDILGYSFLRVLIWFINILALAGNFIVLLVLITSHYKLTVPRFLMCNLS 427

Query:   103 FADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITC 162
             FADFCMGLYL++IA +D ++ G Y+NHAI WQ G GC  AGF TVF+S LS++TLTVIT 
Sbjct:   428 FADFCMGLYLLLIASVDAQTSGQYYNHAIDWQTGSGCSTAGFFTVFASELSVYTLTVITI 487

Query:   163 ERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNS 222
             ERW+TITYA+ L+R+L+L  A  IM+ GWV+SI +A LPL  VS+Y K SICLPM     
Sbjct:   488 ERWHTITYAMQLDRKLRLRHAVPIMLGGWVFSILIAVLPLLGVSSYMKVSICLPMDIETG 547

Query:   223 TDSAYLIFLLLFNGLAFWMICACYARMYSSIR 254
                AY++ +L+ N +AF +ICACY ++Y +++
Sbjct:   548 LSQAYILLILMLNVIAFLVICACYIKIYVAVQ 579
GO:0004964 "luteinizing hormone receptor activity" evidence=IEA
GO:0001541 "ovarian follicle development" evidence=IEA
GO:0005887 "integral to plasma membrane" evidence=IEA
GO:0007190 "activation of adenylate cyclase activity" evidence=IEA
GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA
GO:0007283 "spermatogenesis" evidence=IEA
GO:0032962 "positive regulation of inositol trisphosphate biosynthetic process" evidence=IEA
GO:0035472 "choriogonadotropin hormone receptor activity" evidence=IEA
GO:0038106 "choriogonadotropin hormone binding" evidence=IEA
GO:0043950 "positive regulation of cAMP-mediated signaling" evidence=IEA
GO:0046544 "development of secondary male sexual characteristics" evidence=IEA
GO:0060065 "uterus development" evidence=IEA
GO:0071371 "cellular response to gonadotropin stimulus" evidence=IEA
GO:0072520 "seminiferous tubule development" evidence=IEA
GO:0090030 "regulation of steroid hormone biosynthetic process" evidence=IEA
UNIPROTKB|Q90674 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E7ENI1 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PDH1 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P22888 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:96783 Lhcgr "luteinizing hormone/choriogonadotropin receptor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMH0 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q28005 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKI7 LHCGR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGD5 FSHR "Follicle-stimulating hormone receptor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P22888LSHR_HUMANNo assigned EC number0.56540.81670.3061yesN/A
P30730LSHR_MOUSENo assigned EC number0.56270.82060.3071yesN/A
P16235LSHR_RATNo assigned EC number0.55140.81670.3057yesN/A
P16582LSHR_PIGNo assigned EC number0.54410.82060.3089yesN/A
Q28005LSHR_BOVINNo assigned EC number0.54880.82060.3067yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 4e-19
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 5e-04
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 14/179 (7%)

Query: 82  LVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRG-MGCQ 140
           LV++ ++   T     + NLA AD    L L   A+        Y+     W  G   C+
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWAL--------YYLVGGDWPFGDALCK 52

Query: 141 MAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAAL 200
           + GFL V +   SI  LT I+ +R+  I + +   R      A  +++V WV ++ ++  
Sbjct: 53  LVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLP 112

Query: 201 PLF----DVSNYSKTSICLPMKNTNSTDSAYLIFL-LLFNGLAFWMICACYARMYSSIR 254
           PL             + CL      ST  +Y +   LL   L   +I  CY  +  ++R
Sbjct: 113 PLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLR 171

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
PHA03234 338 DNA packaging protein UL33; Provisional 99.97
KOG4219|consensus 423 99.96
KOG2087|consensus 363 99.96
PHA02638 417 CC chemokine receptor-like protein; Provisional 99.96
PHA03235 409 DNA packaging protein UL33; Provisional 99.96
PHA02834323 chemokine receptor-like protein; Provisional 99.96
KOG4220|consensus 503 99.95
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.94
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.93
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.68
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.43
PF11710201 Git3: G protein-coupled glucose receptor regulatin 99.34
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.31
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.24
PF05462 303 Dicty_CAR: Slime mold cyclic AMP receptor 99.21
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.95
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 98.86
PF10292 324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.58
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.46
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 98.22
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 98.04
PF02117 328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 97.98
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 97.84
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.66
KOG4193|consensus610 97.5
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 97.48
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 97.3
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 97.26
PF01534 328 Frizzled: Frizzled/Smoothened family membrane regi 97.23
KOG4564|consensus 473 97.0
PF10326 307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 96.92
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 96.79
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 96.51
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 95.96
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 95.31
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 92.49
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 89.93
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 87.45
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information 
Probab=99.97  E-value=1e-30  Score=223.12  Aligned_cols=188  Identities=13%  Similarity=0.120  Sum_probs=143.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccc
Q psy12217         57 MGNWALRVSVWFVAIAALVGNLAVLLVL--ISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQ  134 (262)
Q Consensus        57 ~~~~~~~~~~~~i~~~g~~gN~~vl~~~--~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~  134 (262)
                      ..+.++..+|.+++++|++||+++++++  .+++++|+++|+++.|||+||++.++..+|+....          ..+|.
T Consensus        30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~----------~~~w~   99 (338)
T PHA03234         30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNR----------EALFN   99 (338)
T ss_pred             HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCcc
Confidence            4577889999999999999999999965  45566789999999999999999988877765421          23699


Q ss_pred             cCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCC--C-C
Q psy12217        135 RGM-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNY--S-K  210 (262)
Q Consensus       135 ~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~--~-~  210 (262)
                      +|+ .|++..++.....++|++++++||+|||++|++|.+++.  ++++....+++.|+.+++.+.|++...+..  + .
T Consensus       100 fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~  177 (338)
T PHA03234        100 FNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGN  177 (338)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCC
Confidence            999 899999999999999999999999999999999988642  334444556667999999887776543322  1 2


Q ss_pred             ceEEeecCCCCCCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12217        211 TSICLPMKNTNSTDSAYLI----FLLLFNGLAFWMICACYARMYSSIRGG  256 (262)
Q Consensus       211 ~~~C~~~~~~~~~~~~~~~----~~~~~~~ip~~ii~~~y~~I~~~l~~~  256 (262)
                      ...|...++++.....+..    ..++++++|+++|.+||.+|.++++++
T Consensus       178 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~  227 (338)
T PHA03234        178 YGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL  227 (338)
T ss_pred             CCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2468665543222122221    123356899999999999999999763

>KOG4219|consensus Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
4ay9_X350 Structure Of Follicle-Stimulating Hormone In Comple 7e-04
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With The Entire Ectodomain Of Its Receptor Length = 350 Back     alignment and structure 
Iteration: 1

 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 40  EVRCHPAPDAFNPCEDLMGNWALR 63
           +V C P PDAFNPCED+MG   LR
Sbjct: 327 DVTCSPKPDAFNPCEDIMGYNILR 350

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 3e-24
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 7e-22
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 2e-15
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 2e-15
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 8e-14
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 2e-13
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 2e-13
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 1e-12
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 9e-12
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 4e-11
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 7e-11
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 1e-10
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 2e-09
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 7e-09
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 2e-08
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 2e-07
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
 Score =   99 bits (249), Expect = 3e-24
 Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 13/193 (6%)

Query: 68  FVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYF 127
              I    GN  V+ +   ++   T     + NLAF+DF        +           F
Sbjct: 43  ICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTF-----SLVNGFPLMTISCF 97

Query: 128 NHAIYWQRG-MGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKI 186
                W  G   C++ GF+      +SI T+ +I+ +R+  I   +  ++++    A  +
Sbjct: 98  LK--KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIM 155

Query: 187 MVVGWVYSIAMAALPLFDVSNY----SKTSICLPMKNTNSTDSAYLIFLLLFN-GLAFWM 241
           ++  W++S+  A  P+F    Y       +      + +ST  + ++ + +        +
Sbjct: 156 IIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILI 215

Query: 242 ICACYARMYSSIR 254
           I  CY  +  S+ 
Sbjct: 216 IFFCYFNIVMSVS 228
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.97
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.97
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.97
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 99.97
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.97
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.97
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.97
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.97
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 99.97
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.97
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.96
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.96
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.96
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 99.96
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.96
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.96
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.95
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.64
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.99
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=4e-33  Score=250.26  Aligned_cols=198  Identities=15%  Similarity=0.213  Sum_probs=161.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q psy12217         55 DLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFR---MTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAI  131 (262)
Q Consensus        55 ~~~~~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~---~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~  131 (262)
                      +.....++.+++.+++++|++||+++++++.++|++   ++++|+|++|||++|++++++.+|..+....      ...+
T Consensus        28 ~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~------~~~~  101 (510)
T 4grv_A           28 DIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFI------WVHH  101 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TCCS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCC
Confidence            335567788899999999999999999999887654   4788999999999999999998888775433      2235


Q ss_pred             ccccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCC--
Q psy12217        132 YWQRGM-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNY--  208 (262)
Q Consensus       132 ~w~~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~--  208 (262)
                      .|.+|+ +|++..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|++++++..  
T Consensus       102 ~w~~g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~  181 (510)
T 4grv_A          102 PWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNR  181 (510)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEEC
T ss_pred             CEEhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhccccc
Confidence            799999 89999999999999999999999999999999999999999999999999999999999998887754321  


Q ss_pred             ------CCceEEeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy12217        209 ------SKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTE  258 (262)
Q Consensus       209 ------~~~~~C~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~  258 (262)
                            .....|...++......++.+..++.+++|+++|+++|.+|++.++++.+
T Consensus       182 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~  237 (510)
T 4grv_A          182 SADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVN  237 (510)
T ss_dssp             SSSSCCGGGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred             ccCCCCCCccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence                  12346766554433333334445566889999999999999999998754
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d1u19a_ 348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 1e-07
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.6 bits (117), Expect = 1e-07
 Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 1/186 (0%)

Query: 62  LRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVR 121
           L   ++ + +     N   L V +  +   T   +++ NLA AD  M        +    
Sbjct: 40  LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL 99

Query: 122 SIGDYFNHAIYWQRGMGCQMAGFLTVFS-SVLSIFTLTVITCERWYTITYAIHLNRRLKL 180
                F        G    + G + ++S  VL+I    V+            H    +  
Sbjct: 100 HGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF 159

Query: 181 STATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFW 240
           +    +             +P     +          +  N +   Y+  +     L   
Sbjct: 160 TWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVI 219

Query: 241 MICACY 246
             C   
Sbjct: 220 FFCYGQ 225

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d1u19a_ 348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.93
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.6e-25  Score=185.81  Aligned_cols=194  Identities=20%  Similarity=0.324  Sum_probs=152.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccC
Q psy12217         57 MGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRG  136 (262)
Q Consensus        57 ~~~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  136 (262)
                      ....++.+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++...|..+....        .+.|..+
T Consensus        35 ~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~--------~~~~~~~  106 (348)
T d1u19a_          35 WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL--------HGYFVFG  106 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH--------HTSCTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhc--------cCccccC
Confidence            34567788888999999999999999999999999999999999999999999888887765443        2357777


Q ss_pred             c-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCCC---Cce
Q psy12217        137 M-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYS---KTS  212 (262)
Q Consensus       137 ~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~~---~~~  212 (262)
                      . .|+...++...+..++.++++++++|||.+|++|++|+.. ++++....++.+|..++++..++.++.....   ...
T Consensus       107 ~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (348)
T d1u19a_         107 PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQC  185 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTT
T ss_pred             chhhhhhhhccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccccceeccCCccc
Confidence            7 8999999999999999999999999999999999998654 6677778888889999888878877554432   334


Q ss_pred             EEeecCCCCC---CchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy12217        213 ICLPMKNTNS---TDSAYLIF-LLLFNGLAFWMICACYARMYSSIRGGTEG  259 (262)
Q Consensus       213 ~C~~~~~~~~---~~~~~~~~-~~~~~~ip~~ii~~~y~~I~~~l~~~~~~  259 (262)
                      .|........   ....+... ..+.+++|++++.++|.++.+++||+.++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~  236 (348)
T d1u19a_         186 SCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ  236 (348)
T ss_dssp             EEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCS
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence            4533322222   22223333 33445799999999999999999887654