Psyllid ID: psy12275

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRSTIVIRPN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEccccccccccEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccHHEHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccc
Coil and Loop (DISEMBL)
MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHikldtgtehdcvqddngngrgfdshsgaNFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQhikldkgtehVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEqckirstivirpn
Flexible Loop (DISEMBL)
MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQkqhikldkgtehVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQRtmseqckirstivirpn
Low Complexity Region (SEG)
MTAELSSLLqqqqqqqqqqqqqqqqqqqqqqqhrqqqkqHIKLDTGTEHDCVQDDNGNGRGFDSHSGANFILqqqqqqqqqqqqqqqqqqqqqqqhrhrqqqKQHIKLDKGTEHVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFLqqqqqqqqqqqqqqqqqqqqqqqqqRTMSEQCKIRSTIVIRPN
Disordered region (IsUnstruct)
***************************************************************************************************************TEHVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFL*******************************************
Disordered Region (DISOPRED)
**********************************************TEHDCVQD******GFDSHSGAN******************************************TEHVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIF*************************************STIVIRP*
Disordered Region (DISEMBL)
*****************************************KLDTGTEHDCVQDDNGNGRGFDSHSGANFI***********************************KLDKGTEHVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFLQ******************************CKIRSTIVIRPN
Disordered Region (DISPRO)
*****SSLLQQQ*Q*Q*************************KLDTGTEHDCVQDDNGNGRGFDSHSGANFILQQQQQQQQQ********************QKQHIKLDKGTEHVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFLQQQQQQQQ*******************MSEQCKIRSTIVIRPN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHIKLDTGTEHDCVQDDNGNGRGFDSHSGANFxxxxxxxxxxxxxxxxxxxxxxxxxHRHRQQQKQHIKLDKGTEHVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFxxxxxxxxxxxxxxxxxxxxxxxxxxxTMSEQCKIRSTIVIRPN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
FB|FBgn0004852	1307	Ac76E "Adenylyl cyclase 76E" [	0.150	0.026	0.742	2.2e-08
RGD|619966	95	Adcy7 "adenylate cyclase 7" [R	0.172	0.421	0.560	3e-05

FB|FBgn0004852 Ac76E "Adenylyl cyclase 76E" [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 26/35 (74%), Positives = 33/35 (94%)

Query:   129 EHNIIVLVEFAIALVTILDQINRESFQRFRLRMAI 163
             EHN+++LVEFAIAL++ILD INRESFQRFRLR+ +
Sbjct:  1190 EHNVVILVEFAIALMSILDSINRESFQRFRLRIGL 1224

GO:0004016 "adenylate cyclase activity" evidence=ISS;NAS

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

RGD|619966 Adcy7 "adenylate cyclase 7" [Rattus norvegicus (taxid:10116)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query:   123 EIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAI 163
             E+ +Q  H I V+VEF+IAL++ LD INR SF  FRLR+ I
Sbjct:    37 ELERQHAH-IGVMVEFSIALMSKLDGINRHSFNSFRLRVGI 76


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.141   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       147   0.00091  103 3  11 22  0.39    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  120 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.81u 0.09s 10.90t   Elapsed:  00:00:01
  Total cpu time:  10.81u 0.09s 10.90t   Elapsed:  00:00:01
  Start:  Thu Aug 15 16:20:22 2013   End:  Thu Aug 15 16:20:23 2013

GO:0004016 "adenylate cyclase activity" evidence=ISO;IDA

GO:0006171 "cAMP biosynthetic process" evidence=ISO;IDA

GO:0007165 "signal transduction" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISO

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO;IMP

GO:0060135 "maternal process involved in female pregnancy" evidence=IEP

GO:0071361 "cellular response to ethanol" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	232
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	3e-08
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	3e-08
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	3e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	3e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	3e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.001
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.004
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.004
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.004
PRK00286	438	PRK00286, xseA, exodeoxyribonuclease VII large sub	0.004
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	0.004

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 25/107 (23%)

Query: 4   ELSSLLQQQQQ------QQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNG 57
            L   L++QQ       +  Q+Q   Q+ +QQ QQ +  Q Q      G      Q   G
Sbjct: 592 GLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQ------GQPGQQGQQGQG 645

Query: 58  NGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
                          Q QQ Q  Q  Q    ++QQ  +    +Q+  
Sbjct: 646 QQ-------------QGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 9   LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGA 68
           LQ  Q  Q  Q + QQ  +   +  R+QQ     L   T  D  +  N          G 
Sbjct: 573 LQVTQGGQGGQSEMQQAMEGLGETLREQQG----LSDETFRDLQEQFNAQRGEQQGQQG- 627

Query: 69  NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKG 111
                Q  Q Q Q  QQ QQ Q QQQ  + +  Q     L + 
Sbjct: 628 -----QGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAER 665

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 1   MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGR 60
           +  +L  +++  Q  Q  Q  Q + QQ  +      ++Q   L   T  D  +  N    
Sbjct: 562 LLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQ-GLSDETFRDLQEQFNAQRG 620

Query: 61  GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
                 G     Q  Q Q Q  QQ QQ Q QQQ Q     Q  Q
Sbjct: 621 EQQGQQG-----QGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659

Length = 820

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 23/99 (23%), Positives = 31/99 (31%)

Query: 9   LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGA 68
           LQQ Q     QQ      Q  QQQ +  Q Q                 G           
Sbjct: 243 LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQP 302

Query: 69  NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
             +   QQ Q QQ+  Q ++Q  Q  Q +     ++  K
Sbjct: 303 QLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEAK 341

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 28/115 (24%), Positives = 35/115 (30%), Gaps = 22/115 (19%)

Query: 10  QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
           QQ QQ Q  Q  Q    ++QQ    +  +Q   L            +  GR   +  GA 
Sbjct: 647 QQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAARDALGRAGRAMGGAE 706

Query: 70  FILQQQQ----------------------QQQQQQQQQQQQQQQQQQQHRHRQQQ 102
             L Q                         +   QQQ QQQ  Q QQQ R     
Sbjct: 707 EALGQGDLAEAVDRQGRALEALREGARALGEAMAQQQGQQQGGQGQQQGRQGGNG 761

Length = 820

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 28/95 (29%)

Query: 10  QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
           QQQQQ+  ++ ++Q+++++QQQ    QQKQ                            A 
Sbjct: 67  QQQQQKSAKRAEEQRKKKEQQQAEELQQKQ----------------------------AA 98

Query: 70  FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
              + +Q ++++   Q+Q++Q ++   +   +QKQ
Sbjct: 99  EQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133

Length = 387

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
           Q QQ Q  Q Q Q  QQ QQ Q QQ+    Q
Sbjct: 623 QGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQ 653

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 14/31 (45%), Positives = 15/31 (48%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
            Q  Q Q Q  QQ QQ Q QQQ QQ    + 
Sbjct: 627 GQGGQGQGQPGQQGQQGQGQQQGQQGQGGQG 657

Length = 820

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 28/93 (30%), Positives = 32/93 (34%), Gaps = 19/93 (20%)

Query: 10  QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
           QQ QQ QQ    Q Q QQ QQ    Q Q Q  +     +    Q                
Sbjct: 763 QQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ---------------- 806

Query: 70  FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
               QQ    Q Q QQ QQ    Q Q++  QQ 
Sbjct: 807 ---PQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 836

Length = 1355

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 23/95 (24%)

Query: 11  QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANF 70
           QQQ QQ QQ    Q Q QQ QQ    Q Q+ +                            
Sbjct: 762 QQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP--------------------- 800

Query: 71  ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
             Q Q QQ QQ    Q Q QQ QQ    + Q +Q 
Sbjct: 801 --QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP 833

Length = 1355

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 188 FLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
            LQ+Q   Q+ +QQ QQ Q  Q Q Q     +Q
Sbjct: 610 DLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQ 642

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 14/31 (45%), Positives = 15/31 (48%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
           Q  Q Q Q  QQ QQ Q QQQ QQ +     
Sbjct: 628 QGGQGQGQPGQQGQQGQGQQQGQQGQGGQGG 658

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
           Q  QQ QQ Q QQQ QQ Q  Q  Q +++E+
Sbjct: 635 QPGQQGQQGQGQQQGQQGQGGQGGQGSLAER 665

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 15/31 (48%), Positives = 15/31 (48%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
             Q Q Q  QQ QQ Q QQQ QQ Q     Q
Sbjct: 629 GGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659

Length = 820

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 10  QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGR------GFD 63
            Q     QQ      Q  QQQQQ  Q Q Q    +  T H  +                 
Sbjct: 246 PQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLL 305

Query: 64  SHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDK 110
                    Q+  Q ++Q  Q  QQQ++   Q   ++ +++H  +  
Sbjct: 306 PLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEAKRAKRRHKIVSL 352

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 5   LSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDS 64
           L+  ++++ +Q++Q+  Q  ++ + Q   R   +Q  +LD        Q           
Sbjct: 276 LARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLD-----RLQQRLQRALERRLR 330

Query: 65  HSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHV 115
            +        Q+ QQQ  Q++ ++ QQ+ +Q   R ++    +L +  + +
Sbjct: 331 LAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRL 381

Length = 438

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
            ++Q +  +QQ QQQQ+ ++Q ++    EQ
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163

Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG3619|consensus	867		93.76
KOG3598|consensus	2220		86.9

>KOG3619|consensus

Probab=93.76  E-value=0.03  Score=56.26  Aligned_cols=35  Identities=51%  Similarity=0.779  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHh
Q psy12275        130 HNIIVLVEFAIALVTILDQINRESFQRFRLRMAIL  164 (232)
Q Consensus       130 hniivlvefaialvtildqinr~sf~~f~~~~~~~  164 (232)
                      -.+-.++|||+||+-.||-||+-||..|.+|.-|+
T Consensus       732 ~h~~~l~eFAlal~~~L~~IN~~SfNnF~LrIGin  766 (867)
T KOG3619|consen  732 SHLGALVEFALALMHKLDEINRHSFNNFELRIGIN  766 (867)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhHHhhccceeeecee
Confidence            35778999999999999999999999999998765

>KOG3598|consensus

Probab=86.90  E-value=0.86  Score=49.68  Aligned_cols=13  Identities=54%  Similarity=0.365  Sum_probs=6.1

Q ss_pred             hhHHHHHHHHHHH
Q psy12275          5 LSSLLQQQQQQQQ   17 (232)
Q Consensus         5 lssl~qqqqqqqq   17 (232)
                      .|++..+|..+|+
T Consensus      2084 ~~~~~~qQ~~qQq 2096 (2220)
T KOG3598|consen 2084 VSSETRQQIMQQQ 2096 (2220)
T ss_pred             cccchHHHHHHHh
Confidence            3455555444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
1ab8_A	220	Adenylyl cyclase; lyase, complex (transferase-inhi	9e-06

>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B* Length = 220

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 123 EIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAI 163
           E  +Q  H I  +VEFA ALV  LD IN+ SF  F+LR+ I
Sbjct: 91  EPERQYMH-IGTMVEFAYALVGKLDAINKHSFNDFKLRVGI 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1tb3a1	349	c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus	0.001

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 150 NRESFQRFRLRMAIL------DLNVAILGENFKLLLYLPTYLIFFLQQQQQQQQQQQQQQ 203
           N  +F+R RLR   L      D    I G+     + +       +     ++   +  Q
Sbjct: 37  NIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQ 96

Query: 204 QQQQQQQQQQQRTMSEQ 220
           +           + S +
Sbjct: 97  EANICYVISSYASYSLE 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00