Psyllid ID: psy12283

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------79

MTPLPSPSEEQDRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMNFAEMNKLWVRMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQDDQPAEEEDPEDFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNRQEGPPVDGISYEGLTL

cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccc

cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHEEEEEEEcEEEEEcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHcccHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEc

mtplpspseeQDRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDefqrgrkvpdlYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRgvqhplrgLFLRNYLLQCtrnvlpdtpedegdqaegtvrdSVDFILMNFAEMNKLWVRMQhqghsrdkERREREREELRILVGTNlvrlseldsitrdkykKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALkcypdkvdYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNAlnndtlvptsesVDSILTIVSSLvqdqddqpaeeedpedfaEEQGLLGRLVHqfksdvpdqQYLILSTARKHFQaggkkrikhtlpplvFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAmtigsidfenhetISYEFISQALSLYEEEISESKCQLAAITLLVGTFEkmscfgeenaepirTQSALAASKlfkkpdqcsgvctcshlfwsgknsqgeeirdGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDELanlesneeTEQISKHFTNTLFHlrnrqegppvdgisyegltl

mtplpspseeQDRLLEEASHivktqslqmkRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFqrgrkvpdLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPdtpedegdqaegtVRDSVDFILMNFAEMNKLWVRmqhqghsrdkerrerereelrilvgtnlvrlseldsitrdkykklvlpGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETfqklnierveyntpvSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQDDQPAEEEDPEDFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFwsgknsqgeeirdgKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFhlrnrqegppvdgisyegltl

MTPLPSPSEEQDRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMNFAEMNKLWVRMQHQGHSRDKerrerereelrILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVqdqddqpaeeedpedfaeeqGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNRQEGPPVDGISYEGLTL

**********************************************TMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVL**************VRDSVDFILMNFAEMNKLWVRM******************LRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSS***********************LLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENA**IR**SALAASKLFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDELA**************FTNTLFH********************

******P****DRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMNFAEMNKLWVRMQ****************ELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQK**********PVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQD*D**********DFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSA*********KKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFW***************VLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKI*****************KHFTNTLFH*************SYEGLTL

**************LEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTP********GTVRDSVDFILMNFAEMNKLWVRM****************EELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQ****************EEQGLLGRLVHQFKSDVPDQQYLILSTAR*********RIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNRQEGPPVDGISYEGLTL

*****SPSEEQDRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEG**AEGTVRDSVDFILMNFAEMNKLWVRMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQDDQPAEEEDPEDFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNRQEG*************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MTPLPSPSEEQDRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMNFAEMNKLWVRMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQDDQPAEEEDPEDFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITxxxxxxxxxxxxxxxxxxxxxEETEQISKHFTNTLFHLRNRQEGPPVDGISYEGLTL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		788	2.2.26 [Sep-21-2011]
Q9EQH3		796	Vacuolar protein sorting-	yes	N/A	0.993	0.983	0.669	0.0
Q2HJG5		796	Vacuolar protein sorting-	yes	N/A	0.993	0.983	0.669	0.0
Q96QK1		796	Vacuolar protein sorting-	yes	N/A	0.993	0.983	0.668	0.0
F4I0P8		790	Vacuolar protein sorting-	yes	N/A	0.970	0.968	0.414	1e-173
Q7X659		787	Vacuolar protein sorting-	no	N/A	0.965	0.966	0.428	1e-170
Q54C24		781	Vacuolar sorting protein	yes	N/A	0.917	0.925	0.426	1e-163
A8R7K9		790	Vacuolar protein sorting-	no	N/A	0.930	0.927	0.420	1e-161
O74552		836	Vacuolar protein sorting-	yes	N/A	0.914	0.862	0.360	1e-129
P34110		944	Vacuolar protein sorting-	yes	N/A	0.908	0.758	0.335	1e-106

>sp\|Q9EQH3\|VPS35_MOUSE Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1	Back alignment and function desciption

 Score = 1098 bits (2839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/790 (66%), Positives = 655/790 (82%), Gaps = 7/790 (0%)

Query: 6   SPSEEQDRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYEL 65
           SP +EQ++LL+EA   VK QS QMKRCLD +KLMDALKHAS ML ELRTS+LSPK+YYEL
Sbjct: 7   SPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYEL 66

Query: 66  YMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLK 125
           YMA++DEL  LE+YL DEF +GRKV DLYELVQYAGNI+PRLYLLITV +VY+K+    +
Sbjct: 67  YMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSR 126

Query: 126 RDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMN 185
           +D+LKDLVEMCRGVQHPLRGLFLRNYLLQCTRN+LPD  E   ++  G + DS+DF+L+N
Sbjct: 127 KDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSMDFVLLN 186

Query: 186 FAEMNKLWVRMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLPGI 245
           FAEMNKLWVRMQHQGHSRD+E+RERER+ELRILVGTNLVRLS+L+ +  ++YK++VL GI
Sbjct: 187 FAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGI 246

Query: 246 LEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRL 305
           LEQVV+CRDA+AQEYLMECIIQVFPDEFHL TL  FL++CAEL   VNVKNI+IALIDRL
Sbjct: 247 LEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRL 306

Query: 306 SLYAQKNKEFN-----SLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKV 360
           +L+A +           LF+ FS+QVA+++QSR DMP+ED+V+LQVSLINLA+KCYPD+V
Sbjct: 307 ALFAHREDGPGIPAEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRV 366

Query: 361 DYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLME 420
           DY+DK+L+TTVE F KLN+E +  ++ VS+EL RLLKI +D YNNILTV++L +F PL E
Sbjct: 367 DYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFE 426

Query: 421 LFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQDDQPAEEEDPEDFAE 480
            FD+  RKS+S Y+++N L+ +T + + + VDSI+ +VS+L+QDQ DQP E+ DPEDFA+
Sbjct: 427 YFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDFAD 486

Query: 481 EQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSAL 540
           EQ L+GR +H  +SD PDQQYLIL+TARKHF AGG +RI+ TLPPLVF AYQLA ++   
Sbjct: 487 EQSLVGRFIHLLRSDDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKEN 546

Query: 541 REEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEF 600
            + D+ W KKC KIF F HQ I +LIKAELAELPLRLFLQGA+  G I FENHET++YEF
Sbjct: 547 SQMDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEF 606

Query: 601 ISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQ 660
           +SQA SLYE+EIS+SK QLAAITL++GTFE+M CF EEN EP+RTQ ALAASKL KKPDQ
Sbjct: 607 MSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQ 666

Query: 661 CSGVCTCSHLFWSGKNS--QGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNH 718
              V TC+HLFWSG+N+   GEE+  GKRV+ECLKK ++IA+QCMD S+QVQLFIE+LN 
Sbjct: 667 GRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNR 726

Query: 719 YIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNRQEGPPV 778
           YIY++EK+N+ +T+ +LNQLI KIR++L NLES+EETEQI+KHF NTL HLR+R+E P  
Sbjct: 727 YIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRSRRESPES 786

Query: 779 DGISYEGLTL 788
           +G  YEGL L
Sbjct: 787 EGPIYEGLIL 796

Essential component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Also required to regulate transcytosis of the polymeric immunoglobulin receptor (pIgR-pIgA).
Mus musculus (taxid: 10090)

>sp\|Q2HJG5\|VPS35_BOVIN Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1	Back alignment and function description

>sp\|Q96QK1\|VPS35_HUMAN Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2	Back alignment and function description

>sp\|F4I0P8\|VP35B_ARATH Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1	Back alignment and function description

>sp\|Q7X659\|VP35A_ARATH Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=2 SV=1	Back alignment and function description

>sp\|Q54C24\|VPS35_DICDI Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1	Back alignment and function description

>sp\|A8R7K9\|VP35C_ARATH Vacuolar protein sorting-associated protein 35C OS=Arabidopsis thaliana GN=VPS35C PE=2 SV=1	Back alignment and function description

>sp\|O74552\|VPS35_SCHPO Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps35 PE=1 SV=2	Back alignment and function description

>sp\|P34110\|VPS35_YEAST Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS35 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		788
307166763		1160	Vacuolar protein sorting-associated prot	0.997	0.677	0.708	0.0
383865847		803	PREDICTED: vacuolar protein sorting-asso	0.997	0.978	0.709	0.0
307207458		1164	Vacuolar protein sorting-associated prot	0.997	0.675	0.704	0.0
328787733		1149	PREDICTED: vacuolar protein sorting-asso	0.997	0.684	0.700	0.0
350409219		1150	PREDICTED: vacuolar protein sorting-asso	0.997	0.683	0.696	0.0
291240481		796	PREDICTED: vacuolar protein sorting 35-l	0.992	0.982	0.692	0.0
156545687		799	PREDICTED: vacuolar protein sorting-asso	0.987	0.973	0.693	0.0
189442609		796	vps35 protein [Xenopus (Silurana) tropic	0.993	0.983	0.675	0.0
405967409		797	Vacuolar protein sorting-associated prot	0.997	0.986	0.685	0.0
141795336		796	Zgc:136268 protein [Danio rerio]	0.993	0.983	0.667	0.0

>gi\|307166763\|gb\|EFN60725.1\| Vacuolar protein sorting-associated protein 35 [Camponotus floridanus]	Back alignment and taxonomy information

 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/805 (70%), Positives = 682/805 (84%), Gaps = 19/805 (2%)

Query: 1    MTPLPSPSEEQDRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPK 60
            MTP  +  EEQ++LLE+A  +VK Q+ QMK CLD  KLMDALKHASTML ELRTSLLSPK
Sbjct: 358  MTPAITGMEEQEKLLEDAIGVVKVQAFQMKHCLDKAKLMDALKHASTMLGELRTSLLSPK 417

Query: 61   NYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKT 120
            +YYELYMA+TDELR LELYL+DEFQ+GRKV DLYELVQY GNIVPRLYLLITV LVYIKT
Sbjct: 418  SYYELYMAITDELRHLELYLLDEFQKGRKVTDLYELVQYVGNIVPRLYLLITVGLVYIKT 477

Query: 121  NSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVD 180
               LKRDLL+DLVEMCRGVQHPLRGLFLRNYLLQCTRN+LPD  E  GD  +GTVRDS+D
Sbjct: 478  TPGLKRDLLRDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDVTE--GDDEDGTVRDSID 535

Query: 181  FILMNFAEMNKLWVRMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKL 240
            F+LMNFAEMNKLWVRMQHQGHSRD+ERREREREELRILVGTNLVRLS+L+S+T DKYKKL
Sbjct: 536  FVLMNFAEMNKLWVRMQHQGHSRDRERREREREELRILVGTNLVRLSQLESVTLDKYKKL 595

Query: 241  VLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIA 300
            VLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHL TL AFLKSCAELQ GVNVKNI+I+
Sbjct: 596  VLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLQTLNAFLKSCAELQNGVNVKNIIIS 655

Query: 301  LIDRLSLYAQKNKEFNS---------------LFETFSEQVASIVQSRIDMPAEDIVALQ 345
            LIDRL+ ++Q++                    LF+ FS+Q+A I+Q+R DMP EDIV+LQ
Sbjct: 656  LIDRLAAFSQRSDGVGGPGSPNQVSGIPQDVKLFDVFSDQIAIIIQTRQDMPPEDIVSLQ 715

Query: 346  VSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNN 405
            V+LINLA KCYPD+VDY+DK+L TTV+ FQK N++++EYN+ VSREL+RL+KI +D Y N
Sbjct: 716  VALINLAHKCYPDRVDYVDKVLFTTVQIFQKQNVDKLEYNSAVSRELVRLMKIPVDNYKN 775

Query: 406  ILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQ 465
            ILTV++L ++APL++ FD+ GRKS++ Y+ITN L N+TL+P  E VD++L++V+ LVQDQ
Sbjct: 776  ILTVLKLEHYAPLLDYFDYEGRKSLAIYIITNILENETLIPMQEQVDAVLSMVAPLVQDQ 835

Query: 466  DDQPAEEEDPEDFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPP 525
             DQP  EEDPEDFAEEQGLLGRL+H FKS+ PDQQY+ILS ARKHF AGG KRIK+TLPP
Sbjct: 836  PDQPNIEEDPEDFAEEQGLLGRLIHHFKSETPDQQYMILSAARKHFSAGGNKRIKYTLPP 895

Query: 526  LVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTI 585
            ++FQ+YQLA  + AL+++DEMW KKC KIF+FCH  I +L+KAELAELPLRLFLQGA+ I
Sbjct: 896  IIFQSYQLAFTYKALKDQDEMWQKKCQKIFQFCHTTITALMKAELAELPLRLFLQGAIAI 955

Query: 586  GSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRT 645
            G I F+N E ++YEF+SQA S+YE+EIS+SK QLAAITL++ TFE+MSCFGEENAEP+R 
Sbjct: 956  GEIRFDNFEMVAYEFMSQAFSIYEDEISDSKAQLAAITLIIATFEQMSCFGEENAEPVRN 1015

Query: 646  QSALAASKLFKKPDQCSGVCTCSHLFWSGKN--SQGEEIRDGKRVLECLKKGVRIASQCM 703
            Q AL ASKL +KPDQC GV TCSH+FWSGK+  + G+E+++G +VL+CLKKG+RIASQCM
Sbjct: 1016 QCALYASKLLRKPDQCRGVATCSHIFWSGKSLATGGKEMQEGGKVLDCLKKGIRIASQCM 1075

Query: 704  DMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFT 763
            D SVQVQL++ELLNHYIY++EK N  +TV +LNQ+I KIR+EL NLE++EET+QI KH  
Sbjct: 1076 DTSVQVQLYVELLNHYIYFYEKGNTAVTVQILNQVIAKIREELPNLEASEETDQIQKHLA 1135

Query: 764  NTLFHLRNRQEGPPVDGISYEGLTL 788
            NTL HLRNR E    DG+SY+GL L
Sbjct: 1136 NTLEHLRNRMESADSDGLSYQGLVL 1160

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|383865847\|ref\|XP_003708384.1\| PREDICTED: vacuolar protein sorting-associated protein 35-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|307207458\|gb\|EFN85169.1\| Vacuolar protein sorting-associated protein 35 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|328787733\|ref\|XP_392327.3\| PREDICTED: vacuolar protein sorting-associated protein 35 isoform 1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|350409219\|ref\|XP_003488657.1\| PREDICTED: vacuolar protein sorting-associated protein 35-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|291240481\|ref\|XP_002740147.1\| PREDICTED: vacuolar protein sorting 35-like [Saccoglossus kowalevskii]	Back alignment and taxonomy information

>gi\|156545687\|ref\|XP_001604419.1\| PREDICTED: vacuolar protein sorting-associated protein 35-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|189442609\|gb\|AAI67336.1\| vps35 protein [Xenopus (Silurana) tropicalis]	Back alignment and taxonomy information

>gi\|405967409\|gb\|EKC32573.1\| Vacuolar protein sorting-associated protein 35, partial [Crassostrea gigas]	Back alignment and taxonomy information

>gi\|141795336\|gb\|AAI39645.1\| Zgc:136268 protein [Danio rerio]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		788
UNIPROTKB\|F1NVF0		796	VPS35 "Uncharacterized protein	0.998	0.988	0.638	3.3e-276
MGI\|MGI:1890467		796	Vps35 "vacuolar protein sortin	0.998	0.988	0.637	1.1e-275
ZFIN\|ZDB-GENE-030131-2042		854	vps35 "vacuolar protein sortin	0.998	0.921	0.633	1.1e-275
RGD\|1589784		796	Vps35 "vacuolar protein sortin	0.998	0.988	0.634	4.9e-275
UNIPROTKB\|E2QRX1		796	VPS35 "Uncharacterized protein	0.998	0.988	0.636	8e-275
UNIPROTKB\|Q2HJG5		796	VPS35 "Vacuolar protein sortin	0.998	0.988	0.636	1e-274
UNIPROTKB\|Q96QK1		796	VPS35 "Vacuolar protein sortin	0.998	0.988	0.636	1e-274
UNIPROTKB\|I3LBB2		683	VPS35 "Uncharacterized protein	0.856	0.988	0.613	1.5e-225
ASPGD\|ASPL0000075665		866	AN4951 [Emericella nidulans (t	0.411	0.374	0.513	9e-156
UNIPROTKB\|G4N4D6		898	MGG_05089 "Vacuolar protein so	0.390	0.342	0.536	1e-154

UNIPROTKB\|F1NVF0 VPS35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 2655 (939.7 bits), Expect = 3.3e-276, P = 3.3e-276
 Identities = 507/794 (63%), Positives = 625/794 (78%)

Query:     2 TPLPSPSEEQDRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKN 61
             T   SP +EQ++LL+EA   VK QS QMKRCLD +KLMDALKHAS  L ELRTS+LSPK+
Sbjct:     3 TTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNKLGELRTSMLSPKS 62

Query:    62 YYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTN 121
             YYELYMA++DEL  LE+YL DEF +GRKV DLYELVQYAGNI+PRLYLLITV +VY+K+ 
Sbjct:    63 YYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSF 122

Query:   122 SSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDF 181
                ++D+LKDLVEMCRGVQHPLRGLFLRNYLLQCTRN+LPD  E   ++  G + DS+DF
Sbjct:   123 PQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEQADEETTGDISDSMDF 182

Query:   182 ILMNFAEMNKLWVRMQHQGHSRDKXXXXXXXXXXXILVGTNLVRLSELDSITRDKYKKLV 241
             +L+NFAEMNKLWVRMQHQGHSRD+           ILVGTNLVRLS+L+ +  ++YK++V
Sbjct:   183 VLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIV 242

Query:   242 LPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIAL 301
             LPGILEQVV+CRDA+AQEYLMECIIQVFPDEFHL TL  FL++CAEL   VNVKNI+IAL
Sbjct:   243 LPGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIAL 302

Query:   302 IDRLSLYAQKNKEFN-----SLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCY 356
             IDRL+L+A +           LF+ FS+QVA+++QSR DMP+ED+V+LQVSLINLA+KCY
Sbjct:   303 IDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCY 362

Query:   357 PDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFA 416
             PD+VDY+DK+L+TTVE F KLN+E +  ++ VS+EL RLLKI +D YNNILTV++L +F 
Sbjct:   363 PDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLRLKHFH 422

Query:   417 PLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVXXXXXXXXXXXXXX 476
             PL E FD+  RKS+S Y+++N L+ +T + + E VD+I+ +VS+L+              
Sbjct:   423 PLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQEQVDAIMNLVSTLIQDQPDQPAEDPDPE 482

Query:   477 XXXXXXGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQ 536
                    L+GR +H   SD PDQQY IL+TARKHF AGG +RI+ TLPPLVF AYQLA +
Sbjct:   483 DFADEQSLVGRFIHLLHSDDPDQQYKILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 542

Query:   537 FSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETI 596
             +    + D+ W KKC KIF F HQ I +LIKAELAELPLRLFLQGA+  G I FENHET+
Sbjct:   543 YKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETV 602

Query:   597 SYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFK 656
             +YEF+SQA SLYE+EIS+SK QLAAITL++GTFE+M CF EEN EP+RTQ ALAASKL K
Sbjct:   603 AYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLK 662

Query:   657 KPDQCSGVCTCSHLFWSGKNSQ--GEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIE 714
             KPDQC  V TC+HLFWSG+N+   GEE+  GKRV+ECLKK ++IA+QCMD S+QVQLFIE
Sbjct:   663 KPDQCRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIE 722

Query:   715 LLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNRQE 774
             +LN YIY++EK+NE +T+ +LNQLI KIR++L NLES EETEQI+KHF NTL HLR R+E
Sbjct:   723 ILNRYIYFYEKENEAVTIQVLNQLIQKIREDLPNLESTEETEQINKHFHNTLEHLRLRRE 782

Query:   775 GPPVDGISYEGLTL 788
              P  +G  YEGL L
Sbjct:   783 SPESEGPIYEGLVL 796

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

MGI\|MGI:1890467 Vps35 "vacuolar protein sorting 35" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-2042 vps35 "vacuolar protein sorting 35 (yeast)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1589784 Vps35 "vacuolar protein sorting 35 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QRX1 VPS35 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2HJG5 VPS35 "Vacuolar protein sorting-associated protein 35" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96QK1 VPS35 "Vacuolar protein sorting-associated protein 35" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LBB2 VPS35 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000075665 AN4951 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N4D6 MGG_05089 "Vacuolar protein sorting-associated protein 35" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2HJG5	VPS35_BOVIN	No assigned EC number	0.6696	0.9936	0.9836	yes	N/A
F4I0P8	VP35B_ARATH	No assigned EC number	0.4147	0.9708	0.9683	yes	N/A
Q96QK1	VPS35_HUMAN	No assigned EC number	0.6683	0.9936	0.9836	yes	N/A
Q9EQH3	VPS35_MOUSE	No assigned EC number	0.6696	0.9936	0.9836	yes	N/A
Q54C24	VPS35_DICDI	No assigned EC number	0.4268	0.9175	0.9257	yes	N/A
O74552	VPS35_SCHPO	No assigned EC number	0.3608	0.9149	0.8624	yes	N/A
P34110	VPS35_YEAST	No assigned EC number	0.3356	0.9086	0.7584	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		788
pfam03635		741	pfam03635, Vps35, Vacuolar protein sorting-associa	0.0

>gnl\|CDD\|217651 pfam03635, Vps35, Vacuolar protein sorting-associated protein 35	Back alignment and domain information

 Score = 1023 bits (2648), Expect = 0.0
 Identities = 399/747 (53%), Positives = 524/747 (70%), Gaps = 19/747 (2%)

Query: 13  RLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDE 72
           +LLEEA  +VK QS  MKRCLD  KLMDALKHAS MLSELRTS LSPK YYELYM V DE
Sbjct: 1   KLLEEAIAVVKQQSFLMKRCLDQGKLMDALKHASNMLSELRTSSLSPKQYYELYMKVFDE 60

Query: 73  LRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDL 132
           L+ L  YLVDE  +G  + DLYELVQYAGNIVPRLYLLITV  VYIK+  +  +++LKD+
Sbjct: 61  LQYLSTYLVDEHPKGHHLADLYELVQYAGNIVPRLYLLITVGSVYIKSKDAPAKEILKDM 120

Query: 133 VEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMNFAEMNKL 192
           VEMCRGVQHP RGLFLR YL Q T++ LPDT   E +   GTV+DS++F+L NF EMNKL
Sbjct: 121 VEMCRGVQHPTRGLFLRYYLSQRTKDKLPDTGSYE-EGGGGTVQDSIEFLLTNFIEMNKL 179

Query: 193 WVRMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSC 252
           WVR+QHQG SR++E+RE+ER+ELRILVG+NLVRLS+L+ +  + YK+ +LP ILEQVV+C
Sbjct: 180 WVRLQHQGPSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKETILPRILEQVVNC 239

Query: 253 RDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKN 312
           RD +AQEYL+E IIQVFPDEFHLATL   L +C +L  GV+VK ILI L+DRL+ YA+++
Sbjct: 240 RDVLAQEYLLEVIIQVFPDEFHLATLDTLLSACLQLNPGVDVKKILITLMDRLAAYAERS 299

Query: 313 KEFNS------------LFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKV 360
            E  +            LFE F  Q+  ++++R D+P +DI+AL VSL+NL LKCYPD++
Sbjct: 300 NEGVAEVESTKEEEDVDLFEVFWNQLVKLIKARPDLPLQDIIALLVSLLNLTLKCYPDRL 359

Query: 361 DYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLME 420
           DY+D++L   VE            ++ + +E++RLL   I  Y NILT ++L  + PL+ 
Sbjct: 360 DYVDQVLGFAVEKVSNYL-GAKLNSSEIEQEIVRLLLAPISTYKNILTALELPNYQPLLS 418

Query: 421 LFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQDDQPAEEEDPEDFAE 480
             D+  RKSV+  +I N L N+TL+ T + V+ +  ++S L++DQ DQP++E + E+FAE
Sbjct: 419 SLDYSTRKSVALAIIDNILKNNTLITTLDDVERLFELISPLIKDQPDQPSDELETEEFAE 478

Query: 481 EQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSAL 540
           EQ  + RL+H  +SD  ++Q+ IL+T RKH   GG +RI++TLP LVF A +LA +  + 
Sbjct: 479 EQEKVARLIHLIRSDDVEKQFKILNTVRKHLGKGGPERIRYTLPTLVFAALRLARRLKSQ 538

Query: 541 REEDEMWSKKCSKIFRFCHQIILSLIK-AELAELPLRLFLQGAMTIGSIDFENHETISYE 599
            ++D+ W  K  KIF+F H  I  L   A  AEL L+L+LQ A+       E    I+YE
Sbjct: 539 EKKDDKWDAKIKKIFKFIHSTISILYNVAPAAELALKLYLQCAIVADQCGLEE---IAYE 595

Query: 600 FISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPD 659
           F +QA ++YEE IS+SK Q  AI L++ T ++     EEN E + T+ AL ASKL KKPD
Sbjct: 596 FFTQAFTIYEESISDSKAQFQAIVLIISTLQRTRSLPEENYETLATKLALYASKLLKKPD 655

Query: 660 QCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHY 719
           QC  V  CSHLFW+ + S GE  RDGKRVLECL+K +RIA  CMD S  VQLF+E+LN Y
Sbjct: 656 QCRAVYLCSHLFWATELS-GEFYRDGKRVLECLQKALRIADSCMDNSQSVQLFVEILNRY 714

Query: 720 IYYFEKKNEHITVAMLNQLIGKIRDEL 746
           +YYFEK N H+TV  +N LI  I++ L
Sbjct: 715 LYYFEKGNTHVTVKYINGLIELIQENL 741

Vacuolar protein sorting-associated protein (Vps) 35 is one of around 50 proteins involved in protein trafficking. In particular, Vps35 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps26 and Vps29. Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains. Length = 741

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		788
PF03635		762	Vps35: Vacuolar protein sorting-associated protein	100.0
KOG1107\|consensus		760		100.0
KOG3682\|consensus		930		100.0
KOG1107\|consensus		760		99.61

>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules	Back alignment and domain information

Probab=100.00  E-value=8.4e-238  Score=2076.21  Aligned_cols=729  Identities=57%  Similarity=0.948  Sum_probs=235.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhchhhHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhCCCCchh
Q psy12283         13 RLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPD   92 (788)
Q Consensus        13 k~l~ea~~~Vk~qa~~Mkr~ld~~~L~~aLkhas~mL~ELRts~LsPk~YYeLYm~v~d~L~~L~~~l~d~~~~g~~l~d   92 (788)
                      |||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus         1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d   80 (762)
T PF03635_consen    1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD   80 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcchhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhcccchhHHHHHHHHHHHhchhcCCCCCCCCCCCCC
Q psy12283         93 LYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAE  172 (788)
Q Consensus        93 LYE~VQyagnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~~  172 (788)
                      |||+||||||||||||||||||++||+++++|++||||||+|||||||||+|||||||||+|++||+|||+++  +++++
T Consensus        81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~--~~~~~  158 (762)
T PF03635_consen   81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS--EEGNG  158 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC--CCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999874  56889


Q ss_pred             CchhhhHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhcccCCCHHHHhhhhhhhHHHHHHhh
Q psy12283        173 GTVRDSVDFILMNFAEMNKLWVRMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSC  252 (788)
Q Consensus       173 g~v~dsi~FlL~NF~EMNKLWVRmQhqg~~rer~kr~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C  252 (788)
                      |++.||++||++||+||||||||||||||+|||+||++||+|||+||||||||||||||+|+++|++.|||+||||||+|
T Consensus       159 g~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c  238 (762)
T PF03635_consen  159 GDVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQC  238 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHhhchhccChhhHHHhHHHHHHHHhccccCCCHHHHHHHHHHHHhhhhhccch-----------------h
Q psy12283        253 RDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKE-----------------F  315 (788)
Q Consensus       253 ~D~lAQeYLmd~IIQvFPdefHl~TL~~lL~~~~~l~~~V~i~~Il~~Li~RL~~y~~~~~~-----------------~  315 (788)
                      ||++||+|||||||||||||||++||+.||++|++++|+||++.|+++|||||++|+.++++                 +
T Consensus       239 ~D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~  318 (762)
T PF03635_consen  239 RDVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPED  318 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhh
Confidence            99999999999999999999999999999999999999999999999999999999985443                 5


Q ss_pred             chHHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhccccccccCCchhHHHHHHH
Q psy12283        316 NSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRL  395 (788)
Q Consensus       316 ~~lf~~f~~~i~~l~~~~~~l~l~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~~~~l~~l  395 (788)
                      +++|++||+++.+++++||++|++|++++++++++|+++|||++++|||.+|+.|++++...+..+...+.++.++|++|
T Consensus       319 ~~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~L  398 (762)
T PF03635_consen  319 VDLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKL  398 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999987544555567889999999


Q ss_pred             HHHHHHhhhhHHHHhccCCcHHHHhccCchhhHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHhhhhccCCCCCCCCC---
Q psy12283        396 LKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQDDQPAEE---  472 (788)
Q Consensus       396 L~~pl~~~~~~~~vl~l~~f~~ll~~l~~~~r~~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~---  472 (788)
                      |..|+++|.+++++++|++|++|++.|++++||+||..|+++++++++.|+|+++++.+|++++||++|.+++++++   
T Consensus       399 L~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~  478 (762)
T PF03635_consen  399 LTLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDL  478 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888764   


Q ss_pred             -CChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhhhhh---------h
Q psy12283        473 -EDPEDFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALR---------E  542 (788)
Q Consensus       473 -~d~~~~~~eq~lv~r~ihli~~~d~e~q~~~l~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~---------~  542 (788)
                       .++++|.+||++|||+||+++++|+++|+++|..+|+||++||++|++||||||||++|+|+|++...+         .
T Consensus       479 ~~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg~~ri~~TlP~LIf~~lkL~r~~~~~~~~~~~~~~~~  558 (762)
T PF03635_consen  479 KEDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGNGGPKRIRYTLPPLIFAALKLARRIKDLKQKYPNNAIKD  558 (762)
T ss_dssp             ------TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-SSSHHHHCHHHHHHHHHHHHHHHCCC---------C
T ss_pred             cCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCceeeeeHHHHHHHHHHHHHHHHHhhccchhhcccc
Confidence             368899999999999999999999999999999999999999999999999999999999999998765         4


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHH
Q psy12283        543 EDEMWSKKCSKIFRFCHQIILSLIKAEL-AELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAA  621 (788)
Q Consensus       543 ~~~~~~~~~~k~f~fv~~~I~~l~~~~~-~~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~a  621 (788)
                      .++.|+.+++++|+|||+||+.|++... ++++||||||||++||+++   ++++|||||+|||+||||+|+|||+|++|
T Consensus       559 ~~~~~~~~~~kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~---~e~iaYEFf~QAf~iYEE~IsDSk~Q~~a  635 (762)
T PF03635_consen  559 DDEDWEKKCKKIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCG---LEEIAYEFFSQAFTIYEEEISDSKAQFQA  635 (762)
T ss_dssp             T-TTHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH--SHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhC---cHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence            4668999999999999999999997554 8999999999999999999   79999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccCCchhHHHHHHhhhhccCCCCC--CCccccchhHHHHHHHHHHHHH
Q psy12283        622 ITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGKNS--QGEEIRDGKRVLECLKKGVRIA  699 (788)
Q Consensus       622 l~~ii~tl~~~~~~~~e~y~~L~tk~~~~askLLkK~dQcrav~~cshLfW~~~~~--~~~~~~d~krVleCLqkalkiA  699 (788)
                      |.+|||||+++|+|++||||+|+||||+||||||||||||||||+||||||+++.+  ++..+||||||+||||||||||
T Consensus       636 L~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriA  715 (762)
T PF03635_consen  636 LTLIIGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIA  715 (762)
T ss_dssp             HHHHHHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999864  4568999999999999999999


Q ss_pred             HhhhchhhhHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHh
Q psy12283        700 SQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDEL  746 (788)
Q Consensus       700 ~~~~d~~~~~~LfieiLn~~ly~~~~~~~~vt~~~in~Li~lI~~~~  746 (788)
                      |+|||+.++++|||||||+|+|||++||++||++||||||++|++|+
T Consensus       716 ds~md~~~~~~LfveILn~ylyf~~~~~~~vt~~~in~LIelI~~~~  762 (762)
T PF03635_consen  716 DSCMDPSQSVQLFVEILNRYLYFFEKGNEEVTVKYINGLIELIKENL  762 (762)
T ss_dssp             HCSSSHHHHHHHHHHHHHHHHHHHTTT-TTS-HCHHHHHHHHHHCC-
T ss_pred             HHHhCcchhHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999985

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.

>KOG1107\|consensus	Back alignment and domain information

>KOG3682\|consensus	Back alignment and domain information

>KOG1107\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		788
2r17_C		298	Functional Architecture Of The Retromer Cargo-Recog		1e-114

>pdb|2R17|C Chain C, Functional Architecture Of The Retromer Cargo-Recognition Complex Length = 298

Back alignment and structure

Iteration: 1

Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/291 (67%), Positives = 236/291 (81%), Gaps = 2/291 (0%) Query: 484 LLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREE 543 L+GR +H +S+ PDQQYLIL+TARKHF AGG +RI+ TLPPLVF AYQLA ++ + Sbjct: 8 LVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKV 67 Query: 544 DEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQ 603 D+ W KKC KIF F HQ I +LIKAELAELPLRLFLQGA+ G I FENHET++YEF SQ Sbjct: 68 DDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFXSQ 127 Query: 604 ALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSG 663 A SLYE+EIS+SK QLAAITL++GTFE+ CF EEN EP+RTQ ALAASKL KKPDQ Sbjct: 128 AFSLYEDEISDSKAQLAAITLIIGTFERXKCFSEENHEPLRTQCALAASKLLKKPDQGRA 187 Query: 664 VCTCSHLFWSGKNS--QGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIY 721 V TC+HLFWSG+N+ GEE+ GKRV ECLKK ++IA+QC D S+QVQLFIE+LN YIY Sbjct: 188 VSTCAHLFWSGRNTDKNGEELHGGKRVXECLKKALKIANQCXDPSLQVQLFIEILNRYIY 247 Query: 722 YFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNR 772 ++EK+N+ +T+ +LNQLI KIR++L NLES+EETEQI+KHF NTL HLR R Sbjct: 248 FYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 298

PyMOL of 2r17

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		788
2r17_C		298	Vacuolar protein sorting-associated protein 35; pr	1e-125
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15

>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens} Length = 298	Back alignment and structure

 Score =  377 bits (969), Expect = e-125
 Identities = 202/298 (67%), Positives = 246/298 (82%), Gaps = 2/298 (0%)

Query: 477 DFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQ 536
           DFA+EQ L+GR +H  +S+ PDQQYLIL+TARKHF AGG +RI+ TLPPLVF AYQLA +
Sbjct: 1   DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 60

Query: 537 FSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETI 596
           +    + D+ W KKC KIF F HQ I +LIKAELAELPLRLFLQGA+  G I FENHET+
Sbjct: 61  YKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETV 120

Query: 597 SYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFK 656
           +YEF+SQA SLYE+EIS+SK QLAAITL++GTFE+M CF EEN EP+RTQ ALAASKL K
Sbjct: 121 AYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLK 180

Query: 657 KPDQCSGVCTCSHLFWSGKNSQ--GEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIE 714
           KPDQ   V TC+HLFWSG+N+   GEE+  GKRV+ECLKK ++IA+QCMD S+QVQLFIE
Sbjct: 181 KPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIE 240

Query: 715 LLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNR 772
           +LN YIY++EK+N+ +T+ +LNQLI KIR++L NLES+EETEQI+KHF NTL HLR R
Sbjct: 241 ILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 298

PyMOL of 2r17

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		788
2r17_C		298	Vacuolar protein sorting-associated protein 35; pr	100.0

>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=8.2e-95  Score=769.69  Aligned_cols=296  Identities=68%  Similarity=1.110  Sum_probs=284.9

Q ss_pred             hHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHH
Q psy12283        477 DFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFR  556 (788)
Q Consensus       477 ~~~~eq~lv~r~ihli~~~d~e~q~~~l~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~k~f~  556 (788)
                      ||.+||++|||+||+++++|||+||++|..+|++|++||++|++||+|||||++|+|+++++..++.|+.|+.+++|+|+
T Consensus         1 ef~eeQ~~varliHli~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~~~~~kif~   80 (298)
T 2r17_C            1 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFS   80 (298)
T ss_dssp             CTTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999877778899999999999


Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCC
Q psy12283        557 FCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFG  636 (788)
Q Consensus       557 fv~~~I~~l~~~~~~~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~  636 (788)
                      |||++|+.|+..+.|+++||||||||++||++||++++++|||||+|||+||||+|+|||+|++||.+|||||+++++|+
T Consensus        81 fv~~~i~~L~~~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~  160 (298)
T 2r17_C           81 FAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFS  160 (298)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCC
Confidence            99999999988778999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHhhccCCchhHHHHHHhhhhccCCCCC--CCccccchhHHHHHHHHHHHHHHhhhchhhhHHHHHH
Q psy12283        637 EENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGKNS--QGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIE  714 (788)
Q Consensus       637 ~e~y~~L~tk~~~~askLLkK~dQcrav~~cshLfW~~~~~--~~~~~~d~krVleCLqkalkiA~~~~d~~~~~~Lfie  714 (788)
                      +||||+|+||||+||||||||||||||||+||||||++...  +++++||||||+|||||||||||+|||+.++++||||
T Consensus       161 ~enye~L~tk~t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~~v~Lfve  240 (298)
T 2r17_C          161 EENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIE  240 (298)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhhHHHHHHH
Confidence            99999999999999999999999999999999999996543  4557999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCccccHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHhc
Q psy12283        715 LLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNR  772 (788)
Q Consensus       715 iLn~~ly~~~~~~~~vt~~~in~Li~lI~~~~~~l~~~~~~~~~~~~~~~t~~~i~~~  772 (788)
                      |||+|+|||++||++||++||||||++|++|+.+++++.+.+++++||+||++||+.|
T Consensus       241 ILn~ylyff~~g~~~Vt~~~in~LI~lI~~~l~~~~~~~~~~~~~~~f~~tl~yI~~~  298 (298)
T 2r17_C          241 ILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR  298 (298)
T ss_dssp             HHHHHHHHHTTTCTTSCHHHHHHHHHHHHTTTTSSCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhhhhCCCCcccHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998888888999999999999999875

PyMOL of 2r17

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00