Psyllid ID: psy12319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVWKDPPTISH
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHEcccccccccEccccccccccccccEcccccccccccHccccccccEccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccc
Coil and Loop (DISEMBL)
MSFFYCIATILEFAAVHYFtktgsgeipflvssdeirvhphpksyvsedeedeqtnihkikvdyrvCSVYEirtlkvcpnivdqlstdEVNLVANEKYRKKREQEVSREGYQFHINSvskidrvsrilfpasfglLNLFYWISYITdqenfvwkdpptish
Flexible Loop (DISEMBL)
MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPhpksyvsedeedeqtnihkikvdyrVCSVYEIRTlkvcpnivdqlstdevnlvanekyrkkreqevsregyqfhinsvskidrvSRILFPASFGLLNLFYWISYITDQENFVWKDPPTISH
Low Complexity Region (SEG)
MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVWKDPPTISH
Disordered region (IsUnstruct)
**FFYCIATILEFAAVHYFTKTGSGEIPFLVS************************IHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEK***********EGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVWK*******
Disordered Region (DISOPRED)
MSFFYCIATILEFAAVHYFTKTGSGE***********************************************TLK******************************SREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFV*********
Disordered Region (DISEMBL)
MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPH*************TNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKY*********REGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVWKDPPTISH
Disordered Region (DISPRO)
MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSS******************************YRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVW********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVWKDPPTISH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q24352	686	Gamma-aminobutyric acid r	no	N/A	0.366	0.086	0.433	1e-07
P19969	464	Gamma-aminobutyric acid r	yes	N/A	0.757	0.262	0.296	4e-07
P19150	455	Gamma-aminobutyric acid r	no	N/A	0.751	0.265	0.298	2e-06
Q08E50	462	Gamma-aminobutyric acid r	yes	N/A	0.757	0.264	0.251	3e-06
P10063	451	Gamma-aminobutyric acid r	no	N/A	0.739	0.263	0.296	3e-06
Q5R6B2	456	Gamma-aminobutyric acid r	yes	N/A	0.739	0.260	0.299	3e-06
Q5RCC5	451	Gamma-aminobutyric acid r	yes	N/A	0.739	0.263	0.296	4e-06
P23576	451	Gamma-aminobutyric acid r	no	N/A	0.739	0.263	0.296	4e-06
P47869	451	Gamma-aminobutyric acid r	yes	N/A	0.739	0.263	0.296	4e-06
P26048	451	Gamma-aminobutyric acid r	yes	N/A	0.739	0.263	0.296	4e-06

>sp|Q24352|GBRAL_DROME Gamma-aminobutyric acid receptor alpha-like OS=Drosophila melanogaster GN=Grd PE=1 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 98  YRKKREQEVSREGYQF-HINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVWKDP 156
           Y ++ E E  R+G +    NSVSKIDR SRI+FP  F L+N+FYW  Y++     +   P
Sbjct: 623 YYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGYLSRSSRILANTP 682

GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel. May combine with the ligand-gated ion channel subunit Lcch3 to form cation-selective GABA-gated ion channels.
Drosophila melanogaster (taxid: 7227)

>sp|P19969|GBRA5_RAT Gamma-aminobutyric acid receptor subunit alpha-5 OS=Rattus norvegicus GN=Gabra5 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 23/145 (15%)

Query: 3   FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
           + +  + ++EFA V+YFTK G        + D  +     K  + + E +   N      
Sbjct: 328 YAFVFSALIEFATVNYFTKRG-------WAWDGKKALEAAK--IKKKERELILN------ 372

Query: 63  DYRVCSVYEIRTLKVCPNIV-DQLSTDEVNLVANEKYRKKREQEV-SREGYQFHINSVSK 120
             +  + +    L   PNI  +QL     N V     R   E+   S++ Y    NS+SK
Sbjct: 373 --KSTNAFTTGKLTHPPNIPKEQLPGGTGNAVGTASIRASEEKTSESKKTY----NSISK 426

Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
           ID++SRI+FP  FG  NL YW +Y+
Sbjct: 427 IDKMSRIVFPILFGTFNLVYWATYL 451

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Rattus norvegicus (taxid: 10116)

>sp|P19150|GBRA1_CHICK Gamma-aminobutyric acid receptor subunit alpha-1 OS=Gallus gallus GN=GABRA1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 23/144 (15%)

Query: 3   FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
           + +  + ++EFA V+YFTK G                   KS V E  +  +  + K   
Sbjct: 321 YAFVFSALIEFATVNYFTKRGYAW--------------DGKSVVPEKPKKVKDPLIKKNN 366

Query: 63  DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVAN-EKYRKKREQEVSREGYQFHINSVSKI 121
            Y   +          PNI        +   A  E    K E + +     F  NSVSKI
Sbjct: 367 TYTAAAT------SYTPNIARDPGLATIAKSATIEPKEVKPETKPAEPKKTF--NSVSKI 418

Query: 122 DRVSRILFPASFGLLNLFYWISYI 145
           DR+SRI FP  FG+ NL YW +Y+
Sbjct: 419 DRLSRIAFPLLFGIFNLVYWATYL 442

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Gallus gallus (taxid: 9031)

>sp|Q08E50|GBRA5_BOVIN Gamma-aminobutyric acid receptor subunit alpha-5 OS=Bos taurus GN=GABRA5 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 21/143 (14%)

Query: 3   FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
           + +  + ++EFA V+YFTK G        + D  +     K  + + E +   N      
Sbjct: 328 YAFVFSALIEFATVNYFTKRG-------WAWDGKKALEAAK--IKKKERELTIN------ 372

Query: 63  DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKID 122
             +  + Y    +   PNI  + +       ++   + + +   +++ Y    NS+SKID
Sbjct: 373 --KSTNAYTTGKMTHPPNIPKEQTPAGTTNASSASVKPEDKASENKKTY----NSISKID 426

Query: 123 RVSRILFPASFGLLNLFYWISYI 145
           ++SRI+FP  FG  NL YW +Y+
Sbjct: 427 KMSRIIFPLLFGTFNLVYWATYL 449

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Bos taurus (taxid: 9913)

>sp|P10063|GBRA2_BOVIN Gamma-aminobutyric acid receptor subunit alpha-2 OS=Bos taurus GN=GABRA2 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)

Query: 3   FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
           + +  + ++EFA V+YFTK G                   KS V++ ++++ + + +   
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKASVMIQNNA 366

Query: 63  DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
                + Y     K  V   I    +T E N        KK E + +     F  NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416

Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
           IDR+SRI+FP  FG  NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Bos taurus (taxid: 9913)

>sp|Q5R6B2|GBRA1_PONAB Gamma-aminobutyric acid receptor subunit alpha-1 OS=Pongo abelii GN=GABRA1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 28/147 (19%)

Query: 3   FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
           + +  + ++EFA V+YFTK G        + D   V P         E+ ++     IK 
Sbjct: 321 YAFVFSALIEFATVNYFTKRG-------YAWDGKSVVP---------EKPKKVKDPLIKK 364

Query: 63  DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGY----QFHINSV 118
           +    + Y        PN    L+  +  L    K      +EV  E      +   NSV
Sbjct: 365 N----NTYAPTATSYTPN----LAGGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSV 416

Query: 119 SKIDRVSRILFPASFGLLNLFYWISYI 145
           SKIDR+SRI FP  FG+ NL YW +Y+
Sbjct: 417 SKIDRLSRIAFPLLFGIFNLIYWATYL 443

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Pongo abelii (taxid: 9601)

>sp|Q5RCC5|GBRA2_PONAB Gamma-aminobutyric acid receptor subunit alpha-2 OS=Pongo abelii GN=GABRA2 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)

Query: 3   FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
           + +  + ++EFA V+YFTK G                   KS V++ ++++ + + +   
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKASVMIQNNA 366

Query: 63  DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
                + Y     K  V   I    +T E N        KK E + +     F  NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416

Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
           IDR+SRI+FP  FG  NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Pongo abelii (taxid: 9601)

>sp|P23576|GBRA2_RAT Gamma-aminobutyric acid receptor subunit alpha-2 OS=Rattus norvegicus GN=Gabra2 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)

Query: 3   FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
           + +  + ++EFA V+YFTK G                   KS V++ ++++ + + +   
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKGSVMIQNNA 366

Query: 63  DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
                + Y     K  V   I    +T E N        KK E + +     F  NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416

Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
           IDR+SRI+FP  FG  NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Rattus norvegicus (taxid: 10116)

>sp|P47869|GBRA2_HUMAN Gamma-aminobutyric acid receptor subunit alpha-2 OS=Homo sapiens GN=GABRA2 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)

Query: 3   FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
           + +  + ++EFA V+YFTK G                   KS V++ ++++ + + +   
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKASVMIQNNA 366

Query: 63  DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
                + Y     K  V   I    +T E N        KK E + +     F  NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416

Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
           IDR+SRI+FP  FG  NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Homo sapiens (taxid: 9606)

>sp|P26048|GBRA2_MOUSE Gamma-aminobutyric acid receptor subunit alpha-2 OS=Mus musculus GN=Gabra2 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)

Query: 3   FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
           + +  + ++EFA V+YFTK G                   KS V++ ++++ + + +   
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKGSVMIQNNA 366

Query: 63  DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
                + Y     K  V   I    +T E N        KK E + +     F  NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416

Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
           IDR+SRI+FP  FG  NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
118150504	510	cys-loop ligand-gated ion channel subuni	0.962	0.303	0.391	1e-24
357627559	333	cys-loop ligand-gated ion channel subuni	0.931	0.450	0.381	1e-23
383863328	535	PREDICTED: gamma-aminobutyric acid recep	0.900	0.271	0.367	1e-23
307189539	505	Gamma-aminobutyric acid receptor subunit	0.975	0.310	0.353	2e-23
270006459	538	cys-loop ligand-gated ion channel subuni	0.962	0.288	0.378	5e-23
322782659	569	hypothetical protein SINV_01657 [Solenop	0.906	0.256	0.354	6e-22
340727211	520	PREDICTED: gamma-aminobutyric acid recep	0.956	0.296	0.360	2e-21
158262729	549	cys-loop ligand-gated ion channel subuni	0.962	0.282	0.362	9e-21
350423054	535	PREDICTED: gamma-aminobutyric acid recep	0.931	0.280	0.36	1e-20
347963040	464	AGAP000039-PA [Anopheles gambiae str. PE	0.944	0.327	0.379	3e-20

>gi|118150504|ref|NP_001071290.1| cys-loop ligand-gated ion channel subunit 8916 [Apis mellifera] gi|110555530|gb|ABG75745.1| cys-loop ligand-gated ion channel subunit [Apis mellifera]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 101/194 (52%), Gaps = 39/194 (20%)

Query: 1   MSFFYCIATILEFAAVHYFTKTGSGEIPF-------------------LVSSDEIRVHPH 41
           MSF YCIAT+LEFA VHYFTK GSGEIP                    +VS     VHP 
Sbjct: 313 MSFGYCIATLLEFAGVHYFTKVGSGEIPLEEEEWENENESDYQDAFCNIVSCSPQTVHPE 372

Query: 42  PKSYVSEDEEDEQTNIHKIK--VDYRVCSVYEIRTLKVCPNIVDQLSTDEV--------- 90
               VS        +++ +   V Y   S+    T K  P+ +++ +  EV         
Sbjct: 373 TIIDVSRRRSSLICDVYGVNESVSYERGSMTVSVTSK--PSTMERQTQTEVWIPKWRQFL 430

Query: 91  -NLVANEKYRKKREQEVSR------EGYQFHINSVSKIDRVSRILFPASFGLLNLFYWIS 143
             L  +E +RK+R++E +       E    HINSVS ID+V+RI+FPASFGLLN+ YW+ 
Sbjct: 431 YCLAGDESFRKRRQREAAGNCRKRGEKIARHINSVSYIDKVARIVFPASFGLLNICYWVI 490

Query: 144 YITDQENFVWKDPP 157
           Y+T QE F W+D P
Sbjct: 491 YVTYQEEFKWQDSP 504

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627559|gb|EHJ77212.1| cys-loop ligand-gated ion channel subunit [Danaus plexippus]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 95/186 (51%), Gaps = 36/186 (19%)

Query: 1   MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSS-----DEIRVHPHPKSYVS-------- 47
           MSFFYCIAT+LEFA VHYFTK GSGEI    S      +E+         ++        
Sbjct: 159 MSFFYCIATLLEFAGVHYFTKVGSGEIVIDDSEWEDLIEEVGGDAFAARQLAVRRRSSAR 218

Query: 48  ----------EDEEDEQTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEK 97
                      D E E  +   +++     +  E+R     P+    L      L  +++
Sbjct: 219 SSNNFSMPGVSDNEGEMQDQQSVRLTMERTTQTEVRV----PHWRQLLYC----LAGDDQ 270

Query: 98  YRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVWKDPP 157
           YR++R++E    G   HINSVS IDR +R+LFPASF LLNLFYW+ Y    E+F W D P
Sbjct: 271 YRRQRQREAGNRG---HINSVSHIDRAARVLFPASFALLNLFYWMIYAFSNEDFAWSDHP 327

Query: 158 --TISH 161
             T+SH
Sbjct: 328 INTLSH 333

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863328|ref|XP_003707133.1| PREDICTED: gamma-aminobutyric acid receptor alpha-like [Megachile rotundata]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 103/204 (50%), Gaps = 59/204 (28%)

Query: 1   MSFFYCIATILEFAAVHYFTKTGSGEIPF-------------------LVSSDEIRVHPH 41
           MSF YCIAT+LEFA VHYFTK GSGEIP                    +VS     VHP 
Sbjct: 338 MSFGYCIATLLEFAGVHYFTKVGSGEIPLDEEELENESETDFQDGFCSIVSCSPQTVHP- 396

Query: 42  PKSYVSEDEEDEQTNIHKIKVDYRVCSVYEIR----------TLKVC--PNIVDQLSTDE 89
                     +   +IH+ +    +C VY I           T+ V   P+ +++ +  +
Sbjct: 397 ----------ETIIDIHRRRSSL-ICDVYGINESASYGRESMTVSVTSKPSTMERQTQTD 445

Query: 90  V----------NLVANEKYRKKREQEVSR------EGYQFHINSVSKIDRVSRILFPASF 133
           V           L  +E +R++R++E +       E    HINSVS ID+V+RI+FPASF
Sbjct: 446 VWIPKWRQFLYCLAGDEAFRRRRQKEAAGNCRKHGEKIARHINSVSYIDKVARIVFPASF 505

Query: 134 GLLNLFYWISYITDQENFVWKDPP 157
           G LN+ YW+ Y+T QE F W+DPP
Sbjct: 506 GFLNVCYWLIYVTYQEEFKWQDPP 529

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189539|gb|EFN73916.1| Gamma-aminobutyric acid receptor subunit alpha-4 [Camponotus floridanus]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 98/195 (50%), Gaps = 38/195 (19%)

Query: 1   MSFFYCIATILEFAAVHYFTKTGSGEIPF----------------------LVSSDEIRV 38
           MSF YCIAT+LEFA VHYFTK GSGEIP                       ++S      
Sbjct: 302 MSFGYCIATLLEFAGVHYFTKIGSGEIPLDDEEWEDWEGITNEEFEDTFGTIISCSPQTD 361

Query: 39  HPHPKSYVSEDEEDEQTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEV-------- 90
           HP      +       + I+   V Y+         +   P+ +++ +  E+        
Sbjct: 362 HPEIGDTSTRRRGSLISTIYSDGVTYKDSCRSITVAVSSKPSTMERQTQTELILPLWRQF 421

Query: 91  --NLVANEKYRKKREQEVSR------EGYQFHINSVSKIDRVSRILFPASFGLLNLFYWI 142
              L  ++ +R++R++EV+       +    HINSVS IDRV+RI+FPASFGLLN+ YW+
Sbjct: 422 LYCLAGDDAFRRRRQREVTSSYRKCGDRISRHINSVSYIDRVARIVFPASFGLLNVCYWV 481

Query: 143 SYITDQENFVWKDPP 157
            Y+T QE F W+DPP
Sbjct: 482 VYVTYQEEFKWQDPP 496

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006459|gb|EFA02907.1| cys-loop ligand-gated ion channel subunit [Tribolium castaneum]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 94/185 (50%), Gaps = 30/185 (16%)

Query: 1   MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKI 60
           MSFFYCIAT+LEFA VHYFTK GSGEIP      E    P  +       E E +     
Sbjct: 346 MSFFYCIATLLEFAGVHYFTKVGSGEIPVDEDDWEDCNEPEEEMIGMSAAELENSLSPAS 405

Query: 61  KVDYR----VCSVYEIRTL-------------KVCPNI---VDQLSTDEVNL-------- 92
           +   R    +C +Y    L             +V P +   V++ +  EV L        
Sbjct: 406 RAGRRKSSLICPIYNNTALHYSSKRTSLTSNTQVPPPVRLTVERTTQTEVRLPKWKQFLY 465

Query: 93  --VANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQEN 150
               ++K+R++R++E +      H+NSVS IDR +RILFPASFG  NL YW+ Y T Q++
Sbjct: 466 CLKGDDKFRRQRQREAAAGASSEHVNSVSLIDRAARILFPASFGFFNLIYWMIYFTYQDD 525

Query: 151 FVWKD 155
           F W D
Sbjct: 526 FKWAD 530

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322782659|gb|EFZ10522.1| hypothetical protein SINV_01657 [Solenopsis invicta]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 102/206 (49%), Gaps = 60/206 (29%)

Query: 1   MSFFYCIATILEFAAVHYFTKT-GSGEIPF----------------------LVSSDEIR 37
           MSF YCIAT+LEFA VHYFTK   SGEIP                       ++S     
Sbjct: 366 MSFGYCIATLLEFAGVHYFTKVIDSGEIPLDDEEWEEWKDIAGEEFEDTFRSMISCSPQA 425

Query: 38  VHPHPK---------SYVSEDEEDEQTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTD 88
           VHP            +  S+D   E+ + H I V            +   P+ +++ +  
Sbjct: 426 VHPEINTKKRGSLISALYSDDVTYERDSCHSITV-----------AISSKPSTMERQTQT 474

Query: 89  EV----------NLVANEKYRKKREQEVS----REGYQF---HINSVSKIDRVSRILFPA 131
           E            L  ++ +R++R++E +    + GY+    HINSVS IDRV+RI+FPA
Sbjct: 475 EFILPIWRQFLYCLAGDDAFRRRRQREAASNYRKCGYRMSRRHINSVSYIDRVARIVFPA 534

Query: 132 SFGLLNLFYWISYITDQENFVWKDPP 157
           SFGLLN+ YW+ Y+T QE F W+DPP
Sbjct: 535 SFGLLNVCYWVVYVTYQEEFKWQDPP 560

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727211|ref|XP_003401942.1| PREDICTED: gamma-aminobutyric acid receptor alpha-like [Bombus terrestris]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 102/205 (49%), Gaps = 51/205 (24%)

Query: 1   MSFFYCIATILEFAAVHYFTKTGSGEIPF-------------------LVSSDEIRVHPH 41
           MSF YCIAT+LEFA VHYFTK GSGEIP                    +VS     VHP 
Sbjct: 323 MSFGYCIATLLEFAGVHYFTKVGSGEIPLDEEELENESETDYQDGFCGIVSRSPRTVHPE 382

Query: 42  PKSYVSEDEEDEQTNIHKIK--VDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYR 99
               V         +++ +   V Y   S     T K  P+ +++ +  EV +    ++ 
Sbjct: 383 TIIDVPRRRSSLLCDVYDVNESVSYGRGSTTVSVTSK--PSTMERQTQTEVWIPKWRQFL 440

Query: 100 ---------------------KKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNL 138
                                KK+ ++++R     HINSVS ID+V+R++FPASFGLLN+
Sbjct: 441 YCLAGDEEFRRRRQREAAGNCKKKGEKIAR-----HINSVSYIDKVARVVFPASFGLLNV 495

Query: 139 FYWISYITDQENFVWKDPP--TISH 161
            YW+ Y+T QE F W+DPP  +ISH
Sbjct: 496 CYWVIYVTYQEEFKWQDPPFGSISH 520

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158262729|ref|NP_001103425.1| cys-loop ligand-gated ion channel subunit precursor [Tribolium castaneum] gi|156447625|gb|ABU63605.1| cys-loop ligand-gated ion channel subunit [Tribolium castaneum]

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 96/196 (48%), Gaps = 41/196 (20%)

Query: 1   MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKI 60
           MSFFYCIAT+LEFA VHYFTK GSGEIP      E    P  +       E E +     
Sbjct: 346 MSFFYCIATLLEFAGVHYFTKVGSGEIPVDEDDWEDCNEPEEEMIGMSAAELENSLSPAS 405

Query: 61  KVDYR----VCSVYEIRTL-------------KVCPNI---VDQLSTDEVNL-------- 92
           +   R    +C +Y    L             +V P +   V++ +  EV L        
Sbjct: 406 RAGRRKSSLICPIYNNTALHYSSKRTSLTSNTQVPPPVRLTVERTTQTEVRLPKWKQFLY 465

Query: 93  --VANEKYRKKREQEVS-------REGYQFH----INSVSKIDRVSRILFPASFGLLNLF 139
               ++K+R++R++E +         G+  H    +NSVS IDR +RILFPASFG  NL 
Sbjct: 466 CLKGDDKFRRQRQREAAAGASNGNERGHHCHAPRHVNSVSLIDRAARILFPASFGFFNLI 525

Query: 140 YWISYITDQENFVWKD 155
           YW+ Y T Q++F W D
Sbjct: 526 YWMIYFTYQDDFKWAD 541

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423054|ref|XP_003493370.1| PREDICTED: gamma-aminobutyric acid receptor alpha-like [Bombus impatiens]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 98/200 (49%), Gaps = 50/200 (25%)

Query: 1   MSFFYCIATILEFAAVHYFTKTGSGEIPF-------------------LVSSDEIRVHPH 41
           MSF YCIAT+LEFA VHYFTK GSGEIP                    +VS     VHP 
Sbjct: 337 MSFGYCIATLLEFAGVHYFTKVGSGEIPLDEEELENESETDYQDGFCGIVSRSPQTVHPE 396

Query: 42  PKSYVSEDEEDEQTNIHKIK--VDYRVCSVYEIRTLKVCPNIVDQLSTDEVNL------- 92
               V         +++ +   V Y   S   + ++   P+ +++ +  EV +       
Sbjct: 397 TIIDVPRRRSSLLCDVYDVNESVSYGRGSSMTV-SVTSKPSTMERQTQTEVWIPKWRQFL 455

Query: 93  ---------------VANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLN 137
                           A    RKK E+ ++R     HINSVS ID+V+R++FPASFGLLN
Sbjct: 456 YCLAGDEEFRRRRQREAAGNCRKKGEK-IAR-----HINSVSYIDKVARVVFPASFGLLN 509

Query: 138 LFYWISYITDQENFVWKDPP 157
           + YW+ Y+T QE F W+DPP
Sbjct: 510 VCYWVIYVTYQEEFKWQDPP 529

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963040|ref|XP_001237369.2| AGAP000039-PA [Anopheles gambiae str. PEST] gi|333467388|gb|EAU77351.2| AGAP000039-PA [Anopheles gambiae str. PEST]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 94/179 (52%), Gaps = 27/179 (15%)

Query: 1   MSFFYCIATILEFAAVHYFTKTGSGEIPF-------LVSSDEIRVHPHPKSYVSEDEEDE 53
           MSFFYCIAT+LEFA VHYFTK GSGEIP        +   +EIR  P  + ++S     E
Sbjct: 281 MSFFYCIATLLEFAGVHYFTKVGSGEIPLDEEEWEDMEGVEEIRDLPTLQQHLSTAAAIE 340

Query: 54  QTNIHKIKV-DYRVCSVYEIRTLKVCPNIVDQLSTDE-----------------VNLVAN 95
              +   +     +C +Y   T    P     LST E                 +  + +
Sbjct: 341 SPRLLAARRRSSLICPIYNDPTHMFKPT-SSHLSTMERTTQTEPPKEPTWKQVWLCFLGD 399

Query: 96  EKYRKKREQEVS-REGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVW 153
           +++R++R++E S R G   HINSVS ID+ +R+LFPASF   N+ YW+ Y T Q +F W
Sbjct: 400 DQFRRRRQREASARGGGNRHINSVSLIDQAARVLFPASFTFFNILYWLVYYTYQADFTW 458

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
FB|FBgn0030707	612	CG8916 [Drosophila melanogaste	0.515	0.135	0.375	1.1e-19
FB|FBgn0001134	686	Grd "Glycine receptor" [Drosop	0.366	0.086	0.433	1.2e-15
UNIPROTKB|F1NXA6	458	GABRA2 "Uncharacterized protei	0.596	0.209	0.330	2.7e-11
UNIPROTKB|I3L720	367	GABRA2 "Uncharacterized protei	0.465	0.204	0.387	7.5e-11
UNIPROTKB|F1PEH3	442	GABRA2 "Uncharacterized protei	0.465	0.169	0.387	1.4e-10
UNIPROTKB|P10063	451	GABRA2 "Gamma-aminobutyric aci	0.465	0.166	0.387	1.5e-10
UNIPROTKB|P47869	451	GABRA2 "Gamma-aminobutyric aci	0.465	0.166	0.387	1.5e-10
MGI|MGI:95614	451	Gabra2 "gamma-aminobutyric aci	0.465	0.166	0.387	1.5e-10
RGD|61856	451	Gabra2 "gamma-aminobutyric aci	0.465	0.166	0.387	1.5e-10
UNIPROTKB|F1LNE8	451	Gabra2 "Gamma-aminobutyric aci	0.465	0.166	0.387	1.5e-10

FB|FBgn0030707 CG8916 [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 33/88 (37%), Positives = 50/88 (56%)

Query:    73 RTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSRE-----GYQFHINSVSKIDRVSRI 127
             RT +  P  V +L    + L ++  +RK+RE+  + +     G   ++NSVS IDRV+RI
Sbjct:   522 RTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARI 581

Query:   128 LFPASFGLLNLFYWISYITDQENFVWKD 155
              FP SF  LNL YW +Y   ++ F W +
Sbjct:   582 AFPMSFAFLNLLYWWAYGMYKKEFSWSN 609

GO:0004890 "GABA-A receptor activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0001134 Grd "Glycine receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 129 (50.5 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 26/60 (43%), Positives = 36/60 (60%)

Query:    98 YRKKREQEVSREGYQF-HINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVWKDP 156
             Y ++ E E  R+G +    NSVSKIDR SRI+FP  F L+N+FYW  Y++     +   P
Sbjct:   623 YYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGYLSRSSRILANTP 682

GO:0015276 "ligand-gated ion channel activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0016933 "extracellular-glycine-gated ion channel activity" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IDA

GO:0006811 "ion transport" evidence=IDA

UNIPROTKB|F1NXA6 GABRA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
 Identities = 34/103 (33%), Positives = 52/103 (50%)

Query:    43 KSYVSEDEEDEQTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKR 102
             KS V+ D++ E+ ++  IK +    + Y +      PNI        ++  A      K 
Sbjct:   352 KSVVN-DKKKEKASV--IKKN----NAYAVAVANYAPNITKDSVLPTISKSATTAEPNKA 404

Query:   103 EQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYI 145
             + E   +  +   NSVSKIDR+SRI+FP  FG  NL YW +Y+
Sbjct:   405 KPEAKPQEAKKTFNSVSKIDRMSRIVFPVLFGTFNLVYWATYL 447

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0001505 "regulation of neurotransmitter levels" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0008503 "benzodiazepine receptor activity" evidence=IEA

GO:0030285 "integral to synaptic vesicle membrane" evidence=IEA

GO:0030424 "axon" evidence=IEA

UNIPROTKB|I3L720 GABRA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
 Identities = 31/80 (38%), Positives = 41/80 (51%)

Query:    68 SVYEIRTLKVCPNIVDQ--LSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVS 125
             + Y +      PN+     LST   +    E   KK E + +     F  NSVSKIDR+S
Sbjct:   281 NAYAVAVANYAPNLSKDPVLSTISKSATTPEP-NKKPENKPAEAKKTF--NSVSKIDRMS 337

Query:   126 RILFPASFGLLNLFYWISYI 145
             RI+FP  FG  NL YW +Y+
Sbjct:   338 RIVFPVLFGTFNLVYWATYL 357

GO:0030424 "axon" evidence=IEA

GO:0030285 "integral to synaptic vesicle membrane" evidence=IEA

GO:0008503 "benzodiazepine receptor activity" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0001505 "regulation of neurotransmitter levels" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

UNIPROTKB|F1PEH3 GABRA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 122 (48.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 31/80 (38%), Positives = 41/80 (51%)

Query:    68 SVYEIRTLKVCPNIVDQ--LSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVS 125
             + Y +      PN+     LST   +    E   KK E + +     F  NSVSKIDR+S
Sbjct:   356 NAYAVAVANYAPNLSKDPVLSTISKSATTPEP-NKKPENKPAEAKKTF--NSVSKIDRMS 412

Query:   126 RILFPASFGLLNLFYWISYI 145
             RI+FP  FG  NL YW +Y+
Sbjct:   413 RIVFPVLFGTFNLVYWATYL 432

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

UNIPROTKB|P10063 GABRA2 "Gamma-aminobutyric acid receptor subunit alpha-2" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 31/80 (38%), Positives = 41/80 (51%)

Query:    68 SVYEIRTLKVCPNIVDQ--LSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVS 125
             + Y +      PN+     LST   +    E   KK E + +     F  NSVSKIDR+S
Sbjct:   365 NAYAVAVANYAPNLSKDPVLSTISKSATTPEP-NKKPENKPAEAKKTF--NSVSKIDRMS 421

Query:   126 RILFPASFGLLNLFYWISYI 145
             RI+FP  FG  NL YW +Y+
Sbjct:   422 RIVFPVLFGTFNLVYWATYL 441

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

UNIPROTKB|P47869 GABRA2 "Gamma-aminobutyric acid receptor subunit alpha-2" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 31/80 (38%), Positives = 41/80 (51%)

Query:    68 SVYEIRTLKVCPNIVDQ--LSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVS 125
             + Y +      PN+     LST   +    E   KK E + +     F  NSVSKIDR+S
Sbjct:   365 NAYAVAVANYAPNLSKDPVLSTISKSATTPEP-NKKPENKPAEAKKTF--NSVSKIDRMS 421

Query:   126 RILFPASFGLLNLFYWISYI 145
             RI+FP  FG  NL YW +Y+
Sbjct:   422 RIVFPVLFGTFNLVYWATYL 441

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030285 "integral to synaptic vesicle membrane" evidence=IDA

GO:0006836 "neurotransmitter transport" evidence=IMP

GO:0008503 "benzodiazepine receptor activity" evidence=IMP

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IMP

GO:0001505 "regulation of neurotransmitter levels" evidence=IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0034220 "ion transmembrane transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

MGI|MGI:95614 Gabra2 "gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 31/80 (38%), Positives = 41/80 (51%)

Query:    68 SVYEIRTLKVCPNIVDQ--LSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVS 125
             + Y +      PN+     LST   +    E   KK E + +     F  NSVSKIDR+S
Sbjct:   365 NAYAVAVANYAPNLSKDPVLSTISKSATTPEP-NKKPENKPAEAKKTF--NSVSKIDRMS 421

Query:   126 RILFPASFGLLNLFYWISYI 145
             RI+FP  FG  NL YW +Y+
Sbjct:   422 RIVFPVLFGTFNLVYWATYL 441

GO:0001505 "regulation of neurotransmitter levels" evidence=ISO

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=ISO

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=ISO

GO:0008503 "benzodiazepine receptor activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030285 "integral to synaptic vesicle membrane" evidence=ISO

GO:0030424 "axon" evidence=IDA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

RGD|61856 Gabra2 "gamma-aminobutyric acid (GABA) A receptor, alpha 2" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 31/80 (38%), Positives = 41/80 (51%)

Query:    68 SVYEIRTLKVCPNIVDQ--LSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVS 125
             + Y +      PN+     LST   +    E   KK E + +     F  NSVSKIDR+S
Sbjct:   365 NAYAVAVANYAPNLSKDPVLSTISKSATTPEP-NKKPENKPAEAKKTF--NSVSKIDRMS 421

Query:   126 RILFPASFGLLNLFYWISYI 145
             RI+FP  FG  NL YW +Y+
Sbjct:   422 RIVFPVLFGTFNLVYWATYL 441

GO:0001505 "regulation of neurotransmitter levels" evidence=ISO

GO:0004890 "GABA-A receptor activity" evidence=TAS

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=ISO

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA;ISO

GO:0008503 "benzodiazepine receptor activity" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030285 "integral to synaptic vesicle membrane" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0032590 "dendrite membrane" evidence=IDA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1LNE8 Gabra2 "Gamma-aminobutyric acid receptor subunit alpha-2" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 31/80 (38%), Positives = 41/80 (51%)

Query:    68 SVYEIRTLKVCPNIVDQ--LSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVS 125
             + Y +      PN+     LST   +    E   KK E + +     F  NSVSKIDR+S
Sbjct:   365 NAYAVAVANYAPNLSKDPVLSTISKSATTPEP-NKKPENKPAEAKKTF--NSVSKIDRMS 421

Query:   126 RILFPASFGLLNLFYWISYI 145
             RI+FP  FG  NL YW +Y+
Sbjct:   422 RIVFPVLFGTFNLVYWATYL 441

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	161
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	8e-05
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	3e-04

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 84  QLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYW 141
           + + + V  +A     +    EV  +           IDR+SR +FP +F L  L YW
Sbjct: 175 KKALEGVRFIAEHLRSRDEFDEVKEDWKY----VAMVIDRLSRWIFPIAFVLGTLVYW 228

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 102 REQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISY 144
           R+++ S E  +        ID++SR+ FP +F L N+ YW+SY
Sbjct: 417 RKRDESEEVVRDWKFRAKVIDKLSRMAFPLAFLLFNIGYWMSY 459

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG3643|consensus	459		99.8
KOG3642|consensus	466		99.78
KOG3644|consensus	457		99.56
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	99.13
TIGR00860	459	LIC Cation transporter family protein. selective w	97.98

>KOG3643|consensus

Probab=99.80  E-value=2.8e-20  Score=167.02  Aligned_cols=29  Identities=55%  Similarity=1.149  Sum_probs=27.5

Q ss_pred             CchhhHhHHHHHHhHHHHHHHHHHHHHhh
Q psy12319        117 SVSKIDRVSRILFPASFGLLNLFYWISYI  145 (161)
Q Consensus       117 ~~~~iD~~sRi~FP~~F~~FNi~YW~~Y~  145 (161)
                      .++.||+|||++||++|++||++||.||.
T Consensus       430 ~~~~IDkySR~~FP~~F~lFNivYW~yy~  458 (459)
T KOG3643|consen  430 DVSKIDKYSRIVFPLAFSLFNIVYWLYYM  458 (459)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHhheee
Confidence            38899999999999999999999999996

>KOG3642|consensus

Probab=99.78  E-value=7.8e-20  Score=164.65  Aligned_cols=37  Identities=49%  Similarity=0.781  Sum_probs=33.1

Q ss_pred             cCchhhHhHHHHHHhHHHHHHHHHHHHHhhhcccccc
Q psy12319        116 NSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFV  152 (161)
Q Consensus       116 ~~~~~iD~~sRi~FP~~F~~FNi~YW~~Y~~~~~~~~  152 (161)
                      +...+||++|||+||++|++||++||..||+...++.
T Consensus       427 ~~vskiD~~sRivFPv~F~~fNlvYW~~yL~~~~~i~  463 (466)
T KOG3642|consen  427 ISVSKIDNYSRIVFPVLFILFNLVYWVVYLNLEPIIK  463 (466)
T ss_pred             cchhhhhccchhhhHHHHHHHHHHHHhhhccccchhc
Confidence            4678999999999999999999999999998776553

>KOG3644|consensus

Probab=99.56  E-value=2.8e-15  Score=135.90  Aligned_cols=30  Identities=47%  Similarity=1.006  Sum_probs=28.4

Q ss_pred             CchhhHhHHHHHHhHHHHHHHHHHHHHhhh
Q psy12319        117 SVSKIDRVSRILFPASFGLLNLFYWISYIT  146 (161)
Q Consensus       117 ~~~~iD~~sRi~FP~~F~~FNi~YW~~Y~~  146 (161)
                      .+++||++||++||++|++||++||++|+.
T Consensus       427 ~~~~ID~~sr~~FP~~F~~FN~~YW~~y~~  456 (457)
T KOG3644|consen  427 TAERIDRISRFLFPLLFLLFNIIYWTYYLK  456 (457)
T ss_pred             chHHHhHHHHHHHHHHHHHHHHHHhhheEe
Confidence            688999999999999999999999999974

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.13  E-value=1e-10  Score=87.39  Aligned_cols=28  Identities=46%  Similarity=0.800  Sum_probs=25.9

Q ss_pred             eccCchhhHhHHHHHHhHHHHHHHHHHH
Q psy12319        114 HINSVSKIDRVSRILFPASFGLLNLFYW  141 (161)
Q Consensus       114 ~~~~~~~iD~~sRi~FP~~F~~FNi~YW  141 (161)
                      +...+..||+++|++||++|++||++||
T Consensus       210 w~~~A~viDR~~~~~F~i~f~~~~i~yw  237 (237)
T PF02932_consen  210 WKFVAMVIDRLFRILFPIAFILFNIVYW  237 (237)
T ss_dssp             HHSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence            3457999999999999999999999999

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>TIGR00860 LIC Cation transporter family protein

Probab=97.98  E-value=1.2e-05  Score=72.68  Aligned_cols=31  Identities=42%  Similarity=0.782  Sum_probs=28.1

Q ss_pred             eccCchhhHhHHHHHHhHHHHHHHHHHHHHh
Q psy12319        114 HINSVSKIDRVSRILFPASFGLLNLFYWISY  144 (161)
Q Consensus       114 ~~~~~~~iD~~sRi~FP~~F~~FNi~YW~~Y  144 (161)
                      +...+..||+++|++||++|+++|++||.+|
T Consensus       429 W~~~a~viDr~~~~~f~~~~~~~~~~~~~~y  459 (459)
T TIGR00860       429 WKFRAKVIDKLSRMAFPLAFLLFNIGYWMSY  459 (459)
T ss_pred             hhhccchhhHHHHHHHHHHHHHhhhhheEeC
Confidence            3456889999999999999999999999987

selective while glycine receptors are anion selective).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	8e-04

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 106 VSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYIT 146
                 +      + I R SRI FP  F L N+     +  
Sbjct: 280 QHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFFG 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	98.85
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	98.68
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	98.07
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	96.33
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	95.63
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	95.46
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	94.67
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	91.69
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	84.95
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	82.71

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=98.85  E-value=1.2e-09  Score=92.92  Aligned_cols=30  Identities=33%  Similarity=0.756  Sum_probs=26.9

Q ss_pred             chhhHhHHHHHHhHHHHHHHHHHHHHhhhc
Q psy12319        118 VSKIDRVSRILFPASFGLLNLFYWISYITD  147 (161)
Q Consensus       118 ~~~iD~~sRi~FP~~F~~FNi~YW~~Y~~~  147 (161)
                      +.++|+++|++||++|++||+.||..|-..
T Consensus       312 ~~~~~~~~~~~~p~~~~i~n~~~~~~~~~~  341 (347)
T 3rhw_A          312 SKRVDLISRALFPVLFFVFNILYWSRFGHH  341 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            669999999999999999999999998643

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=98.68  E-value=4.4e-09  Score=74.01  Aligned_cols=26  Identities=19%  Similarity=0.593  Sum_probs=20.1

Q ss_pred             CchHHHHHHHHHHHhhhhhhhcCCCc
Q psy12319          1 MSFFYCIATILEFAAVHYFTKTGSGE   26 (161)
Q Consensus         1 ~CFlfVFAaLLEyA~VnY~tk~~s~~   26 (161)
                      +||+|||+||||||+|||++|++.+.
T Consensus        41 ~C~~FVF~aLlEya~V~y~~r~~~~~   66 (76)
T 1vry_A           41 VCLLFVFSALLEYAAVNFVSRKKKKH   66 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            59999999999999999999754443

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=98.07  E-value=2.8e-06  Score=71.21  Aligned_cols=28  Identities=36%  Similarity=0.571  Sum_probs=24.0

Q ss_pred             chhhHhHHHHHHhHHHHHHHHHHHHHhh
Q psy12319        118 VSKIDRVSRILFPASFGLLNLFYWISYI  145 (161)
Q Consensus       118 ~~~iD~~sRi~FP~~F~~FNi~YW~~Y~  145 (161)
                      +.++|+..|++||++|+++|++|+.+..
T Consensus       292 a~~~p~w~r~~fp~~f~~~~~i~~~~~~  319 (321)
T 3tlw_A          292 AASITRASRIAFPVVFLLANIILAFLFF  319 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccChhheeeehHHHHHHHHHHHhhhc
Confidence            4488899999999999999998877664

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=96.33  E-value=0.002  Score=55.13  Aligned_cols=26  Identities=12%  Similarity=-0.069  Sum_probs=21.5

Q ss_pred             ccCchhhHhHHHHHHhHHHHHHHHHH
Q psy12319        115 INSVSKIDRVSRILFPASFGLLNLFY  140 (161)
Q Consensus       115 ~~~~~~iD~~sRi~FP~~F~~FNi~Y  140 (161)
                      ..-+..||+++.++||++|++..++.
T Consensus       333 ~~~a~vlDr~~~~~f~~~~~~~t~~i  358 (370)
T 2bg9_A          333 KYVAMVIDHILLCVFMLICIIGTVSV  358 (370)
T ss_dssp             TSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34588999999999999998876653

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=95.63  E-value=0.0055  Score=52.34  Aligned_cols=24  Identities=21%  Similarity=0.048  Sum_probs=21.5

Q ss_pred             CchhhHhHHHHHHhHHHHHHHHHH
Q psy12319        117 SVSKIDRVSRILFPASFGLLNLFY  140 (161)
Q Consensus       117 ~~~~iD~~sRi~FP~~F~~FNi~Y  140 (161)
                      .+..||+++.++|+++|++.+++-
T Consensus       336 ~a~vlDr~~~~~f~~~~~~~t~~i  359 (370)
T 2bg9_E          336 IGKVIDKACFWIALLLFSLGTLAI  359 (370)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999998764

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=95.46  E-value=0.0093  Score=51.00  Aligned_cols=27  Identities=11%  Similarity=0.114  Sum_probs=23.3

Q ss_pred             cCchhhHhHHHHHHhHHHHHHHHHHHH
Q psy12319        116 NSVSKIDRVSRILFPASFGLLNLFYWI  142 (161)
Q Consensus       116 ~~~~~iD~~sRi~FP~~F~~FNi~YW~  142 (161)
                      .-+..||+++.++|+++|++++++...
T Consensus       331 ~~a~v~Dr~~~~~f~~~~~~~t~~i~~  357 (370)
T 2bg9_B          331 YVAMVADRLFLYIFITMCSIGTFSIFL  357 (370)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            358899999999999999999987543

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=94.67  E-value=0.019  Score=49.09  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=22.6

Q ss_pred             cCchhhHhHHHHHHhHHHHHHHHHHH
Q psy12319        116 NSVSKIDRVSRILFPASFGLLNLFYW  141 (161)
Q Consensus       116 ~~~~~iD~~sRi~FP~~F~~FNi~YW  141 (161)
                      .-+..||+++.++|+++|++.+++..
T Consensus       333 ~~a~vlDr~~~~~f~~~~~~~~~~i~  358 (369)
T 2bg9_C          333 LVGQTIDRLSMFIITPVMVLGTIFIF  358 (369)
T ss_dssp             HCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999988754

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=91.69  E-value=0.066  Score=44.46  Aligned_cols=24  Identities=21%  Similarity=0.142  Sum_probs=20.8

Q ss_pred             CchHHHHHHHHHHHhhhhhhhcCC
Q psy12319          1 MSFFYCIATILEFAAVHYFTKTGS   24 (161)
Q Consensus         1 ~CFlfVFAaLLEyA~VnY~tk~~s   24 (161)
                      +|++|||++|+|+|.|+|+.+++.
T Consensus       268 ~~~~~v~~sll~~~~v~~l~~~~~  291 (322)
T 3rqw_A          268 AGYGSIFAAILLIIFAHHRQANGV  291 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCc
Confidence            489999999999999999986433

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=84.95  E-value=0.39  Score=37.32  Aligned_cols=21  Identities=10%  Similarity=0.120  Sum_probs=18.7

Q ss_pred             CchHHHHHHHHHHHhhhhhhh
Q psy12319          1 MSFFYCIATILEFAAVHYFTK   21 (161)
Q Consensus         1 ~CFlfVFAaLLEyA~VnY~tk   21 (161)
                      +|++||++|++|++.|+++.+
T Consensus        97 ~~m~~v~~sll~tv~Vl~~~~  117 (164)
T 2ksr_A           97 FTMVLVTFSIVTSVCVLNVHH  117 (164)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhhhc
Confidence            489999999999999988774

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=82.71  E-value=0.79  Score=34.37  Aligned_cols=21  Identities=10%  Similarity=0.156  Sum_probs=18.5

Q ss_pred             CchHHHHHHHHHHHhhhhhhh
Q psy12319          1 MSFFYCIATILEFAAVHYFTK   21 (161)
Q Consensus         1 ~CFlfVFAaLLEyA~VnY~tk   21 (161)
                      +|++|||+|++|++.|.++..
T Consensus        76 ~~~~~v~~sl~~tv~V~~~~~   96 (137)
T 2lly_A           76 FTMIFVTLSIVITVFVLNVHH   96 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHhhhhhhhhhHHh
Confidence            489999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	97.79
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	97.18
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	91.62

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.79  E-value=9.4e-06  Score=63.39  Aligned_cols=26  Identities=15%  Similarity=0.111  Sum_probs=22.1

Q ss_pred             CchhhHhHHHHHHhHHHHHHHHHHHH
Q psy12319        117 SVSKIDRVSRILFPASFGLLNLFYWI  142 (161)
Q Consensus       117 ~~~~iD~~sRi~FP~~F~~FNi~YW~  142 (161)
                      -+..||++++++||++|++..+.+|.
T Consensus       225 vA~viDR~~l~vF~~~~~i~t~~i~l  250 (260)
T d1oede_         225 IGKVIDKACFWIALLLFSIGTLAIFL  250 (260)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47789999999999999998876665

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.18  E-value=0.00021  Score=54.73  Aligned_cols=31  Identities=10%  Similarity=-0.013  Sum_probs=25.6

Q ss_pred             ccCchhhHhHHHHHHhHHHHHHHHHHHHHhh
Q psy12319        115 INSVSKIDRVSRILFPASFGLLNLFYWISYI  145 (161)
Q Consensus       115 ~~~~~~iD~~sRi~FP~~F~~FNi~YW~~Y~  145 (161)
                      ..-+..||++++++||++|++..+..|..++
T Consensus       190 ~~vA~viDRi~~~~F~l~~ii~~i~if~~~~  220 (227)
T d1oeda_         190 KYVAMVIDHILLCVFMLICIIGTVSVFAGRL  220 (227)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999999999998888775

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=91.62  E-value=0.12  Score=38.80  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=22.2

Q ss_pred             cCchhhHhHHHHHHhHHHHHHHHHHHHHh
Q psy12319        116 NSVSKIDRVSRILFPASFGLLNLFYWISY  144 (161)
Q Consensus       116 ~~~~~iD~~sRi~FP~~F~~FNi~YW~~Y  144 (161)
                      .-+..||+++.++|.++|++..+..+...
T Consensus       224 ~vA~ViDRlfl~lF~i~~vi~ti~ifl~~  252 (260)
T d1oedc_         224 LVGQTIDRLSMFIITPVMVLGTIFIFVMG  252 (260)
T ss_dssp             --CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34788999999999999988877655433