Psyllid ID: psy12325

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MGLLQGITGFFMMRYGIEHFLRFRKKNSNVGRETQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHH
Coil and Loop (DISEMBL)
MGLLQGITGFFMMRYGIEHFLRFRkknsnvgretqGKMIYFLTFFRehqkgnktstnpvASIYAWTQGLqhrakldntpdlar
Flexible Loop (DISEMBL)
MGLLQGITGFFMMRYGIEHFLRFRkknsnvgreTQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTqglqhrakldntpdlar
Low Complexity Region (SEG)
MGLLQGITGFFMMRYGIEHFLRFRKKNSNVGRETQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR
Disordered region (IsUnstruct)
**LLQGITGFFMMRYGIEHFLRFRKKNSNVGRETQGKMIYFLTFFREHQK*****TNPVASIYAWTQGL**************
Disordered Region (DISOPRED)
***LQGITGFFMMRYGIEHFLR****************IYFLTFFREHQK*****TNPVASIYAWTQGLQHRAKLD*******
Disordered Region (DISEMBL)
MGLLQGITGFFMMRYGIEHFLRFRKKNSNVGRETQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR
Disordered Region (DISPRO)
*GLLQGITGFFMMRYGIEHFLRFRKKNSNVGR*TQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLLQGITGFFMMRYGIEHFLRFRKKNSNVGRETQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
P54071	452	Isocitrate dehydrogenase	yes	N/A	0.469	0.086	0.692	7e-11
P48735	452	Isocitrate dehydrogenase	yes	N/A	0.469	0.086	0.692	7e-11
Q04467	452	Isocitrate dehydrogenase	yes	N/A	0.469	0.086	0.692	7e-11
P56574	452	Isocitrate dehydrogenase	yes	N/A	0.469	0.086	0.692	7e-11
Q4R502	452	Isocitrate dehydrogenase	N/A	N/A	0.469	0.086	0.692	7e-11
P33198	421	Isocitrate dehydrogenase	yes	N/A	0.469	0.092	0.692	8e-11
P79089	498	Isocitrate dehydrogenase	no	N/A	0.445	0.074	0.702	2e-10
P50215	406	Isocitrate dehydrogenase	N/A	N/A	0.469	0.096	0.615	2e-10
P65097	409	Isocitrate dehydrogenase	yes	N/A	0.445	0.090	0.648	4e-10
P65098	409	Isocitrate dehydrogenase	yes	N/A	0.445	0.090	0.648	4e-10

>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393

Plays a role in intermediary metabolism and energy production. It may tightly associate or interact with the pyruvate dehydrogenase complex.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2

>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393

Plays a role in intermediary metabolism and energy production. It may tightly associate or interact with the pyruvate dehydrogenase complex.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393

Plays a role in intermediary metabolism and energy production. It may tightly associate or interact with the pyruvate dehydrogenase complex.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393

Plays a role in intermediary metabolism and energy production. It may tightly associate or interact with the pyruvate dehydrogenase complex.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393

Plays a role in intermediary metabolism and energy production. It may tightly associate or interact with the pyruvate dehydrogenase complex.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 324 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 362

Plays a role in intermediary metabolism and energy production. It may tightly associate or interact with the pyruvate dehydrogenase complex.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P79089|IDHP_ASPNG Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +REHQKG +TSTNP+ASI+AWT+GL  R KLD TPD+
Sbjct: 403 YREHQKGRETSTNPIASIFAWTRGLIQRGKLDETPDV 439

Aspergillus niger (taxid: 5061)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P50215|IDH_SPHYA Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R+HQ+G  TSTNP+ASI+AWTQGL  R K D+TPD+ +
Sbjct: 314 YRQHQQGKATSTNPIASIFAWTQGLSFRGKFDDTPDVVK 352

Sphingomonas yanoikuyae (taxid: 13690)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P65097|IDH_MYCTU Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +R++Q G  TSTNP+ASI+AWT+GLQHR KLD TP++
Sbjct: 319 YRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEV 355

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P65098|IDH_MYCBO Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=icd PE=3 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +R++Q G  TSTNP+ASI+AWT+GLQHR KLD TP++
Sbjct: 319 YRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEV 355

Mycobacterium bovis (taxid: 1765)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
390338631	449	PREDICTED: LOW QUALITY PROTEIN: isocitra	0.445	0.082	0.837	1e-12
170034336	397	isocitrate dehydrogenase [Culex quinquef	0.469	0.098	0.820	2e-12
347969399	445	AGAP003168-PA [Anopheles gambiae str. PE	0.469	0.087	0.794	2e-12
91083633	436	PREDICTED: similar to isocitrate dehydro	0.469	0.089	0.794	3e-12
312385883	186	hypothetical protein AND_00212 [Anophele	0.469	0.209	0.820	3e-12
321472567	446	hypothetical protein DAPPUDRAFT_301820 [	0.469	0.087	0.769	5e-12
226227735	468	NADP-dependent isocitrate dehydrogenase	0.469	0.083	0.743	9e-12
443718284	393	hypothetical protein CAPTEDRAFT_163979 [	0.469	0.099	0.769	9e-12
193580190	448	PREDICTED: isocitrate dehydrogenase [NAD	0.469	0.087	0.743	1e-11
189190682	416	isocitrate dehydrogenase, mitochondrial	0.445	0.088	0.810	2e-11

>gi|390338631|ref|XP_785580.3| PREDICTED: LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP], mitochondrial-like [Strongylocentrotus purpuratus]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/37 (83%), Positives = 35/37 (94%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           FREHQKGN TSTNP+ASI+AWT+GL+HRAKLDN PDL
Sbjct: 355 FREHQKGNATSTNPIASIFAWTRGLEHRAKLDNNPDL 391

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

>gi|170034336|ref|XP_001845030.1| isocitrate dehydrogenase [Culex quinquefasciatus] gi|167875663|gb|EDS39046.1| isocitrate dehydrogenase [Culex quinquefasciatus]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/39 (82%), Positives = 36/39 (92%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNPVASI+AWT+GL+HRAKLDNTPDL R
Sbjct: 302 YREHQKGRPTSTNPVASIFAWTRGLEHRAKLDNTPDLGR 340

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969399|ref|XP_312860.5| AGAP003168-PA [Anopheles gambiae str. PEST] gi|333468507|gb|EAA08466.6| AGAP003168-PA [Anopheles gambiae str. PEST]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/39 (79%), Positives = 37/39 (94%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HRAKLDNTP+LAR
Sbjct: 350 YREHQKGRPTSTNPIASIFAWTRGLEHRAKLDNTPELAR 388

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083633|ref|XP_970446.1| PREDICTED: similar to isocitrate dehydrogenase [Tribolium castaneum] gi|270007851|gb|EFA04299.1| hypothetical protein TcasGA2_TC014590 [Tribolium castaneum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/39 (79%), Positives = 37/39 (94%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKGN TSTNP+ASI+AWT+GL+HRAKLD TPDLA+
Sbjct: 342 YREHQKGNPTSTNPIASIFAWTRGLEHRAKLDGTPDLAK 380

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385883|gb|EFR30275.1| hypothetical protein AND_00212 [Anopheles darlingi]

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/39 (82%), Positives = 37/39 (94%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNPVASI+AWT+GL+HRAKLDNTP+LAR
Sbjct: 91  YREHQKGRPTSTNPVASIFAWTRGLEHRAKLDNTPELAR 129

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321472567|gb|EFX83537.1| hypothetical protein DAPPUDRAFT_301820 [Daphnia pulex]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/39 (76%), Positives = 36/39 (92%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HRAKLDN P+LAR
Sbjct: 351 YREHQKGKSTSTNPIASIFAWTRGLEHRAKLDNNPELAR 389

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|226227735|ref|YP_002761841.1| NADP-dependent isocitrate dehydrogenase [Gemmatimonas aurantiaca T-27] gi|226090926|dbj|BAH39371.1| NADP-dependent isocitrate dehydrogenase [Gemmatimonas aurantiaca T-27]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKGNKTSTNP+ASI+AWT+GL HR K+D TPD+ R
Sbjct: 379 YREHQKGNKTSTNPIASIFAWTRGLMHRGKVDGTPDVVR 417

Source: Gemmatimonas aurantiaca T-27

Species: Gemmatimonas aurantiaca

Genus: Gemmatimonas

Family: Gemmatimonadaceae

Order: Gemmatimonadales

Class: Gemmatimonadetes

Phylum: Gemmatimonadetes

Superkingdom: Bacteria

>gi|443718284|gb|ELU08989.1| hypothetical protein CAPTEDRAFT_163979 [Capitella teleta]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/39 (76%), Positives = 35/39 (89%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKGN TSTNP+ASI+AWT+GL+HRA LDN PDL R
Sbjct: 299 YREHQKGNATSTNPIASIFAWTRGLEHRALLDNNPDLTR 337

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|193580190|ref|XP_001943698.1| PREDICTED: isocitrate dehydrogenase [NADP], mitochondrial-like [Acyrthosiphon pisum]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/39 (74%), Positives = 37/39 (94%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R+HQ+G  TSTNP+ASIYAWT+GL+HRAKLDNTP+LA+
Sbjct: 341 YRQHQEGKLTSTNPIASIYAWTRGLKHRAKLDNTPELAK 379

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|189190682|ref|XP_001931680.1| isocitrate dehydrogenase, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973286|gb|EDU40785.1| isocitrate dehydrogenase, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/37 (81%), Positives = 34/37 (91%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           FREHQKGN+TSTNP+ASIYAWTQGL  R +LDNTP+L
Sbjct: 321 FREHQKGNETSTNPIASIYAWTQGLAKRGELDNTPEL 357

Source: Pyrenophora tritici-repentis Pt-1C-BFP

Species: Pyrenophora tritici-repentis

Genus: Pyrenophora

Family: Pleosporaceae

Order: Pleosporales

Class: Dothideomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
ZFIN|ZDB-GENE-031118-95	449	idh2 "isocitrate dehydrogenase	0.469	0.086	0.692	5.7e-11
UNIPROTKB|B4DSZ6	322	IDH2 "cDNA FLJ50654, highly si	0.469	0.121	0.692	9.2e-11
UNIPROTKB|B4DFL2	400	IDH2 "Isocitrate dehydrogenase	0.469	0.097	0.692	1.6e-10
UNIPROTKB|F1SK00	413	IDH2 "Isocitrate dehydrogenase	0.469	0.094	0.692	1.7e-10
UNIPROTKB|P33198	421	IDH2 "Isocitrate dehydrogenase	0.469	0.092	0.692	1.7e-10
UNIPROTKB|F1PAM3	422	IDH2 "Isocitrate dehydrogenase	0.469	0.092	0.692	1.8e-10
UNIPROTKB|Q04467	452	IDH2 "Isocitrate dehydrogenase	0.469	0.086	0.692	2e-10
UNIPROTKB|P48735	452	IDH2 "Isocitrate dehydrogenase	0.469	0.086	0.692	2e-10
UNIPROTKB|Q4R502	452	IDH2 "Isocitrate dehydrogenase	0.469	0.086	0.692	2e-10
MGI|MGI:96414	452	Idh2 "isocitrate dehydrogenase	0.469	0.086	0.692	2e-10

ZFIN|ZDB-GENE-031118-95 idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 27/39 (69%), Positives = 33/39 (84%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD  PDL +
Sbjct:   353 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNPDLIK 391

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0006102 "isocitrate metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

UNIPROTKB|B4DSZ6 IDH2 "cDNA FLJ50654, highly similar to Isocitrate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct:   225 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 263

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA

GO:0006102 "isocitrate metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|B4DFL2 IDH2 "Isocitrate dehydrogenase [NADP]" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct:   303 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 341

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0006102 "isocitrate metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct:   316 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 354

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006102 "isocitrate metabolic process" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|P33198 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct:   324 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 362

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006102 "isocitrate metabolic process" evidence=ISS

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0006097 "glyoxylate cycle" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct:   326 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 364

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006102 "isocitrate metabolic process" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct:   355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=ISS

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006102 "isocitrate metabolic process" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0006097 "glyoxylate cycle" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct:   355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393

GO:0051287 "NAD binding" evidence=IEA

GO:0006097 "glyoxylate cycle" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=EXP;ISS

GO:0006102 "isocitrate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0005975 "carbohydrate metabolic process" evidence=NAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006099 "tricarboxylic acid cycle" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)]

 Score = 155 (59.6 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct:   355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=ISS

GO:0006102 "isocitrate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

MGI|MGI:96414 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query:    45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct:   355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006097 "glyoxylate cycle" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0006102 "isocitrate metabolic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q04467	IDHP_BOVIN	1, ., 1, ., 1, ., 4, 2	0.6923	0.4698	0.0862	yes	N/A
P65097	IDH_MYCTU	1, ., 1, ., 1, ., 4, 2	0.6486	0.4457	0.0904	yes	N/A
P65098	IDH_MYCBO	1, ., 1, ., 1, ., 4, 2	0.6486	0.4457	0.0904	yes	N/A
P48735	IDHP_HUMAN	1, ., 1, ., 1, ., 4, 2	0.6923	0.4698	0.0862	yes	N/A
Q75JR3	IDHC_DICDI	1, ., 1, ., 1, ., 4, 2	0.6666	0.4698	0.0946	yes	N/A
P54071	IDHP_MOUSE	1, ., 1, ., 1, ., 4, 2	0.6923	0.4698	0.0862	yes	N/A
P41939	IDHC_YEAST	1, ., 1, ., 1, ., 4, 2	0.6153	0.4698	0.0946	yes	N/A
P33198	IDHP_PIG	1, ., 1, ., 1, ., 4, 2	0.6923	0.4698	0.0926	yes	N/A
P56574	IDHP_RAT	1, ., 1, ., 1, ., 4, 2	0.6923	0.4698	0.0862	yes	N/A
O14254	IDHP_SCHPO	1, ., 1, ., 1, ., 4, 2	0.5128	0.4698	0.0888	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	83
PRK08299	402	PRK08299, PRK08299, isocitrate dehydrogenase; Vali	3e-21
PTZ00435	413	PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov	7e-21
TIGR00127	409	TIGR00127, nadp_idh_euk, isocitrate dehydrogenase,	4e-16
PLN03065	483	PLN03065, PLN03065, isocitrate dehydrogenase (NADP	6e-16
PLN00103	410	PLN00103, PLN00103, isocitrate dehydrogenase (NADP	2e-13
COG0538	407	COG0538, Icd, Isocitrate dehydrogenases [Energy pr	8e-07

>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated

 Score = 84.9 bits (211), Expect = 3e-21
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R+HQKG +TSTNP+ASI+AWT+GL HR KLD  P+L +
Sbjct: 314 YRQHQKGEETSTNPIASIFAWTRGLAHRGKLDGNPELVK 352

Length = 402

>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional

 Score = 83.9 bits (208), Expect = 7e-21
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R+HQKG +TSTN +ASI+AWT+GL HRAKLDN  +L +
Sbjct: 317 YRQHQKGKETSTNSIASIFAWTRGLAHRAKLDNNQELVK 355

Length = 413

>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type

 Score = 70.7 bits (173), Expect = 4e-16
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +R +QKG +TSTN +ASI+AW++GL HRAKLDN P+L
Sbjct: 315 YRMYQKGQETSTNSIASIFAWSRGLAHRAKLDNNPEL 351

This model describes a eukaryotic, NADP-dependent form of isocitrate dehydrogenase. These eukaryotic enzymes differ considerably from a fairly tight cluster that includes all other related isocitrate dehydrogenases, 3-isopropylmalate dehydrogenases, and tartrate dehydrogenases. Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide [Energy metabolism, TCA cycle]. Length = 409

>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional

 Score = 70.3 bits (172), Expect = 6e-16
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           FR HQKG +TSTN +ASI+AWT+GL+HRAKLD   +L
Sbjct: 385 FRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEEL 421

Length = 483

>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +R HQKG +TSTN +ASI+AW++GL HRAKLD    L
Sbjct: 318 YRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARL 354

Length = 410

>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion]

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 53  KTSTNPVASIYAWTQGLQHRAKLDNTP 79
           K STNP+ASI + T  L+HR  L+   
Sbjct: 337 KDSTNPIASILSGTMMLRHRGWLEAAD 363

Length = 407

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
KOG1526|consensus	422		99.97
PLN03065	483	isocitrate dehydrogenase (NADP+); Provisional	99.7
PLN00096	393	isocitrate dehydrogenase (NADP+); Provisional	99.57
COG0538	407	Icd Isocitrate dehydrogenases [Energy production a	99.06
PTZ00435	413	isocitrate dehydrogenase; Provisional	98.88
TIGR00127	409	nadp_idh_euk isocitrate dehydrogenase, NADP-depend	98.72
PLN00103	410	isocitrate dehydrogenase (NADP+); Provisional	98.03
PRK08299	402	isocitrate dehydrogenase; Validated	97.86
TIGR00183	416	prok_nadp_idh isocitrate dehydrogenase, NADP-depen	89.47
PRK00772	358	3-isopropylmalate dehydrogenase; Provisional	81.57
PRK07006	409	isocitrate dehydrogenase; Reviewed	81.52

>KOG1526|consensus

Probab=99.97  E-value=2.2e-31  Score=214.84  Aligned_cols=55  Identities=53%  Similarity=0.729  Sum_probs=53.4

Q ss_pred             CcceecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325         28 SNVGRETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA   82 (83)
Q Consensus        28 ~~Vgv~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~   82 (83)
                      .||++|||||       |||||||||+||||+|||||||||||||||||+|||+||+|++|.
T Consensus       302 TSVLv~pdGKT~EaEAAHGTVtRHyr~hqkG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~  363 (422)
T KOG1526|consen  302 TSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNSIASIFAWTRGLAHRAKLDNNEALA  363 (422)
T ss_pred             eeEEEcCCCCeeeeeccccchhHHHHHHhcCCCccCcchHHHHHHHHHHHHhhccCCCHHHH
Confidence            5899999999       999999999999999999999999999999999999999999885

>PLN03065 isocitrate dehydrogenase (NADP+); Provisional

Probab=99.70  E-value=5.6e-18  Score=138.90  Aligned_cols=55  Identities=51%  Similarity=0.752  Sum_probs=51.2

Q ss_pred             CcceecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325         28 SNVGRETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA   82 (83)
Q Consensus        28 ~~Vgv~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~   82 (83)
                      .|+.++|||+       ||||+||||+||+|++||+||||+||||+.+|+|+|++|+|++|.
T Consensus       361 pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~  422 (483)
T PLN03065        361 TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELL  422 (483)
T ss_pred             ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHHHHHHHhCCCCccchHH
Confidence            4566789995       999999999999999999999999999999999999999999875

>PLN00096 isocitrate dehydrogenase (NADP+); Provisional

Probab=99.57  E-value=1.4e-15  Score=122.43  Aligned_cols=42  Identities=17%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCC
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTP   79 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~   79 (83)
                      |||++|||++||||++||+||+|+|+||+.+|.||++||+++
T Consensus       306 HGSApdiag~~~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~  347 (393)
T PLN00096        306 HGTVTDMDEARLRGEETSLNPLGMVEGLIGAMNHAADVHGGK  347 (393)
T ss_pred             CCChHHhhhhhhcCCCCccChHHHHHHHHHHHHhhcccCCCc
Confidence            999999999999999999999999999999999999999986

>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]

Probab=99.06  E-value=5e-11  Score=97.30  Aligned_cols=38  Identities=34%  Similarity=0.345  Sum_probs=35.7

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      ||||+|||     |+ +|+||+|+||||+++|+|||.+|.++-+
T Consensus       328 HGTapk~a-----G~-~~~Np~a~Ils~~~ml~~~Gw~eaa~li  365 (407)
T COG0538         328 HGTAPKYA-----GK-DSTNPIASILSGTMMLRHRGWLEAADLI  365 (407)
T ss_pred             cCcccccc-----Cc-CCCCcHHHHHHHHHHHHHhhhhhhHHHH
Confidence            99999999     88 9999999999999999999999987743

>PTZ00435 isocitrate dehydrogenase; Provisional

Probab=98.88  E-value=1.3e-09  Score=88.25  Aligned_cols=54  Identities=50%  Similarity=0.741  Sum_probs=48.5

Q ss_pred             cceecCCC-------ceeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325         29 NVGRETQG-------KMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA   82 (83)
Q Consensus        29 ~Vgv~pDG-------~hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~   82 (83)
                      |+-+.|||       -|||+.+||++|++|++++.||+|+|+||...|+|.|++|+||++.
T Consensus       294 Sanig~d~~~a~FEp~HGSApdi~~~~iaGk~~~ANP~A~Ils~ammL~~lg~~~~~~~~~  354 (413)
T PTZ00435        294 SVLVCPDGKTVEAEAAHGTVTRHYRQHQKGKETSTNSIASIFAWTRGLAHRAKLDNNQELV  354 (413)
T ss_pred             cceeCCCCCeEEEEcCcCCccccchhhhcCCCCccChHHHHHHHHHHHHHhCcccccchHH
Confidence            33446888       3999999999999999999999999999999999999999988763

>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type

Probab=98.72  E-value=1e-08  Score=83.02  Aligned_cols=50  Identities=52%  Similarity=0.787  Sum_probs=45.4

Q ss_pred             ecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         32 RETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        32 v~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      +++||.       |||+.++|.+|++|++++.||+|+|+||..+|.|+|++|.||.+
T Consensus       295 ig~~~~~~~fEp~HGSApdi~~~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~g~  351 (409)
T TIGR00127       295 ICPDGKTFEAEAAHGTVTRHYRMYQKGQETSTNSIASIFAWSRGLAHRAKLDNNPEL  351 (409)
T ss_pred             eCCCCceEEeccccCCCcccchhhhCCCCCccChHHHHHHHHHHHHHhhhcCCcccH
Confidence            457764       99999999999999999999999999999999999999887765

This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.

>PLN00103 isocitrate dehydrogenase (NADP+); Provisional

Probab=98.03  E-value=4.2e-06  Score=68.03  Aligned_cols=44  Identities=52%  Similarity=0.810  Sum_probs=42.1

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      |||..+||++|+-..+...||+|+|.||.-.|+|.+.+|+|+.+
T Consensus       311 HGSApd~~~~~diaGk~iANP~A~IlS~ammL~~l~~~~~~~g~  354 (410)
T PLN00103        311 HGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARL  354 (410)
T ss_pred             CCcCcccchhhhhcCCCccChHHHHHHHHHHHHHhhccccccch
Confidence            99999999999999999999999999999999999999988765

>PRK08299 isocitrate dehydrogenase; Validated

Probab=97.86  E-value=7.3e-06  Score=66.49  Aligned_cols=45  Identities=56%  Similarity=0.945  Sum_probs=42.9

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA   82 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~   82 (83)
                      |||..+||++|.+|+..+.||+|+|.|+.--|+|-|++|+||++.
T Consensus       307 HGSAPD~~~~~IaGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~  351 (402)
T PRK08299        307 HGTVTRHYRQHQKGEETSTNPIASIFAWTRGLAHRGKLDGNPELV  351 (402)
T ss_pred             CCCCcccccccccCCCCccCHHHHHHHHHHHHHHhCCccccchHH
Confidence            999999999999999999999999999999999999999988764

>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type

Probab=89.47  E-value=0.18  Score=41.03  Aligned_cols=32  Identities=16%  Similarity=0.005  Sum_probs=26.7

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhcc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKL   75 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkL   75 (83)
                      ||+..++..+      ...||+|+|.+|.--|+|.|.-
T Consensus       339 HGSAPdiAGk------~iANP~a~IlS~amML~~lg~~  370 (416)
T TIGR00183       339 HGTAPKYAGQ------DKVNPGSIILSGEMMLEHMGWK  370 (416)
T ss_pred             CCCchhhcCC------CCCCcHHHHHHHHHHHHHcCCH
Confidence            8888886543      6699999999999999998753

Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.

>PRK00772 3-isopropylmalate dehydrogenase; Provisional

Probab=81.57  E-value=1.9  Score=34.64  Aligned_cols=28  Identities=21%  Similarity=0.119  Sum_probs=24.7

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH   71 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h   71 (83)
                      ||+.-+     ++|+ ...||+|+|+||.--|.|
T Consensus       280 HGSApd-----iAGk-~~aNP~a~Ils~ammL~~  307 (358)
T PRK00772        280 HGSAPD-----IAGK-GIANPIATILSAAMMLRY  307 (358)
T ss_pred             CCchhh-----hcCC-CCcCCHHHHHHHHHHHHH
Confidence            888777     6777 679999999999999999

>PRK07006 isocitrate dehydrogenase; Reviewed

Probab=81.52  E-value=1.1  Score=36.58  Aligned_cols=33  Identities=18%  Similarity=0.039  Sum_probs=27.3

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLD   76 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD   76 (83)
                      ||+..+     .+| +...||+|+|.+|.--|+|.|..+
T Consensus       332 HGSAPd-----iAG-k~iANP~a~IlS~amML~~lG~~~  364 (409)
T PRK07006        332 HGTAPK-----YAG-LDKVNPGSVILSAEMMLRHMGWTE  364 (409)
T ss_pred             CCcchh-----hCC-CCCcChHHHHHHHHHHHHHcCCHH
Confidence            788877     346 567999999999999999988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	83
1lwd_A	413	Crystal Structure Of Nadp-Dependent Isocitrate Dehy		6e-12
4hcx_A	409	Structure Of Icdh-1 From M.tuberculosis Complexed W		3e-11
3map_A	422	Crystal Structure Of Homodimeric R132h Mutant Of Hu		6e-11
3inm_A	425	Crystal Structure Of Human Cytosolic Nadp(+)-Depend		6e-11
1t09_A	414	Crystal Structure Of Human Cytosolic Nadp(+)-Depend		6e-11
3us8_A	427	Crystal Structure Of An Isocitrate Dehydrogenase Fr		6e-11
3mas_B	419	Crystal Structure Of Heterodimeric R132h Mutant Of		6e-11
2cmj_A	410	Crystal Structure Of Mouse Cytosolic Isocitrate Deh		3e-10
2uxq_A	402	Isocitrate Dehydrogenase From The Psychrophilic Bac		8e-09
2qfv_A	427	Crystal Structure Of Saccharomyces Cerevesiae Mitoc		8e-09
1zor_A	399	Isocitrate Dehydrogenase From The Hyperthermophile		9e-07
4aoy_A	402	Open Ctidh. The Complex Structures Of Isocitrate De		1e-04

>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 316 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 354

>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +R++Q G  TSTNP+ASI+AWT+GLQHR KLD TP++
Sbjct: 319 YRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEV 355

>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA
Sbjct: 316 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 353

>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA
Sbjct: 316 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 353

>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA
Sbjct: 316 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 353

>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R+HQKG +TSTN +ASI+AWT+GL HRAKLD   +LA+
Sbjct: 337 YRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAK 375

>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA
Sbjct: 321 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 358

>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AW++GL HRAKLDN  +L+
Sbjct: 313 YRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELS 350

>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           + +H KG +TSTNPVA IYAWT  L+ R +LD TPDL
Sbjct: 312 YYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDL 348

>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R++QKG +TSTN +ASI+AW++GL  R +LDNTP L +
Sbjct: 332 YRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCK 370

>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +  + KG KTSTNP ASI+AWT  ++ R +LD TP++
Sbjct: 310 YYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEV 346

>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           + +H KG +TSTN +A+I+AWT  L+ R +LD   +L
Sbjct: 313 YYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKEL 349

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
4aoy_A	402	Isocitrate dehydrogenase [NADP]; oxidoreductase, t	2e-14
1lwd_A	413	Isocitrate dehydrogenase; tricarboxylic acid cycle	6e-14
2qfy_A	427	Isocitrate dehydrogenase [NADP]; rossmann fold, ox	1e-13
1zor_A	399	Isocitrate dehydrogenase; wild type enzyme, CIS-pr	4e-13
2uxq_A	402	Isocitrate dehydrogenase native; psychrophilic, co	7e-13
3us8_A	427	Isocitrate dehydrogenase [NADP]; PSI-biology, stru	2e-12

>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402

 Score = 65.2 bits (158), Expect = 2e-14
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           + +H KG +TSTN +A+I+AWT  L+ R +LD   +L  
Sbjct: 313 YYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKELVD 351

>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413

 Score = 64.0 bits (155), Expect = 6e-14
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL 
Sbjct: 316 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLI 353

>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427

 Score = 63.3 bits (153), Expect = 1e-13
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R++QKG +TSTN +ASI+AW++GL  R +LDNTP L +
Sbjct: 332 YRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCK 370

>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399

 Score = 61.7 bits (149), Expect = 4e-13
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +  + KG KTSTNP ASI+AWT  ++ R +LD TP++  
Sbjct: 310 YYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCE 348

>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402

 Score = 60.9 bits (147), Expect = 7e-13
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           + +H KG +TSTNPVA IYAWT  L+ R +LD TPDL  
Sbjct: 312 YYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCA 350

>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427

 Score = 59.4 bits (143), Expect = 2e-12
 Identities = 25/38 (65%), Positives = 32/38 (84%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R+HQKG +TSTN +ASI+AWT+GL HRAKLD   +LA
Sbjct: 337 YRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELA 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
4aoy_A	402	Isocitrate dehydrogenase [NADP]; oxidoreductase, t	99.22
3us8_A	427	Isocitrate dehydrogenase [NADP]; PSI-biology, stru	99.12
1lwd_A	413	Isocitrate dehydrogenase; tricarboxylic acid cycle	99.0
2uxq_A	402	Isocitrate dehydrogenase native; psychrophilic, co	98.96
2qfy_A	427	Isocitrate dehydrogenase [NADP]; rossmann fold, ox	98.86
1zor_A	399	Isocitrate dehydrogenase; wild type enzyme, CIS-pr	98.82
1wpw_A	336	3-isopropylmalate dehydrogenase; oxidoreductase; 2	98.19
2d1c_A	496	Isocitrate dehydrogenase; structural genomics, NPP	96.35
2y3z_A	359	3-isopropylmalate dehydrogenase; oxidoreductase, L	96.35
1w0d_A	337	3-isopropylmalate dehydrogenase; oxidoreductase, l	96.23
3blx_A	349	Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl	96.22
3blx_B	354	Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl	96.1
1x0l_A	333	Homoisocitrate dehydrogenase; oxidoreductase, deca	95.99
1a05_A	358	IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid	95.87
3flk_A	364	Tartrate dehydrogenase/decarboxylase; cytoplasm, l	95.69
1hqs_A	423	Isocitrate dehydrogenase; glyoxylate bypass, bsidh	95.49
2e0c_A	409	409AA long hypothetical NADP-dependent isocitrate	95.28
1tyo_A	435	Isocitrate dehydrogenase; enzyme-ethenonadp comple	95.2
1cnz_A	363	IPMDH, IMDH, protein (3-isopropylmalate dehydrogen	95.18
2d4v_A	429	Isocitrate dehydrogenase; alpha and beta protein,	94.81
2iv0_A	412	Isocitrate dehydrogenase; oxidoreductase, tricarbo	94.32
3dms_A	427	Isocitrate dehydrogenase [NADP]; struc genomics, s	92.23
1vlc_A	366	3-isopropylmalate dehydrogenase; TM0556, structura	91.22
3r8w_A	405	3-isopropylmalate dehydrogenase 2, chloroplastic;	87.96
3ty4_A	366	Probable homoisocitrate dehydrogenase; B-hydroxyac	87.94
3vmk_A	375	3-isopropylmalate dehydrogenase; oxidoreductase, d	86.53

>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A

Probab=99.22  E-value=2.4e-12  Score=101.38  Aligned_cols=53  Identities=38%  Similarity=0.580  Sum_probs=32.0

Q ss_pred             cceecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         29 NVGRETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        29 ~Vgv~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      |+-++|||.      |||+.+||++|++|+.+|.||+|+|+||+..|+|+|.+|+|++|
T Consensus       291 sanig~~~~~~fEp~HGSApd~~~~~iaGk~~~aNP~A~Ils~a~mL~~~g~~~~~~~l  349 (402)
T 4aoy_A          291 SVLVSPDGKYEFEAAHGTVTRHYYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKEL  349 (402)
T ss_dssp             EEEECTTCCEEEEC-----------------CCCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccCCCCceEEeeccCCccccchhhccCCCcCcCcHHHHHHHHHHHHHhccccCCchH
Confidence            334478885      99999999999999999999999999999999999999988765

>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}

Probab=99.12  E-value=2e-11  Score=96.74  Aligned_cols=52  Identities=52%  Similarity=0.788  Sum_probs=47.2

Q ss_pred             ceecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         30 VGRETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        30 Vgv~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      +-.+|||+       |||+.+||++|++|+.+|.||+|+|++|+..|+|+|.+|+|++|
T Consensus       315 anig~~~~~a~fEp~HGSAPd~~~~~iAGk~i~ANP~A~IlS~ammL~hlG~~~~~~~l  373 (427)
T 3us8_A          315 VLMTPDGKTVEAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAEL  373 (427)
T ss_dssp             EEECTTSCCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             eEECCCCCeEEEeCCCCCcCCccchhcCCCCceeCHHHHHHHHHHHHHHhccccccchh
Confidence            33467883       99999999999999999999999999999999999999998765

>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*

Probab=99.00  E-value=1.4e-10  Score=91.13  Aligned_cols=52  Identities=56%  Similarity=0.820  Sum_probs=47.1

Q ss_pred             ceecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         30 VGRETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        30 Vgv~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      +-.+|||+       |||+.+||++|++|+.+|.||+|+|+||+..|+|.|..|+||++
T Consensus       294 anig~~~~~~~fEpvHGSAPdi~~~~~aGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l  352 (413)
T 1lwd_A          294 VLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDL  352 (413)
T ss_dssp             EEECTTSSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             ceeCCCCCceEEeCCCCChhhhhhhhhcCCCCccChHHHHHHHHHHHHHcCCccccchh
Confidence            34478885       99999999999999999999999999999999999999887665

>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*

Probab=98.96  E-value=2.4e-10  Score=89.42  Aligned_cols=52  Identities=48%  Similarity=0.683  Sum_probs=47.3

Q ss_pred             ceecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         30 VGRETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        30 Vgv~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      .-.+|||.      |||+.+||++|++|+.+|.||+|+|+||+..|+|.|..|.||++
T Consensus       291 anig~~~~~lfEpvHGSAPdi~~~~~aGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l  348 (402)
T 2uxq_A          291 VLVSPYGYFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDL  348 (402)
T ss_dssp             EEECTTSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             ceecCCCCeEEeCCCCChhhhhhhhhcCCCcccCcHHHHHHHHHHHHHhCcccccchH
Confidence            34478886      99999999999999999999999999999999999999987765

>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*

Probab=98.86  E-value=1e-09  Score=86.63  Aligned_cols=51  Identities=47%  Similarity=0.742  Sum_probs=46.6

Q ss_pred             ecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325         32 RETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA   82 (83)
Q Consensus        32 v~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~   82 (83)
                      ++|||+       ||++.|||+++++|+.+|.||+|+|++|...|+|+|.+|+||++.
T Consensus       312 ig~~~~~~~fEpvHGSAPdi~~~diAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~  369 (427)
T 2qfy_A          312 VTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALC  369 (427)
T ss_dssp             ECTTSCCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             eCCCCceeEecCCCCCcccccchhhcCCCCccCcHHHHHHHHHHHHHhCcccCcchhH
Confidence            467873       999999999999999999999999999999999999999888763

>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}

Probab=98.82  E-value=1.4e-09  Score=85.01  Aligned_cols=52  Identities=40%  Similarity=0.595  Sum_probs=46.5

Q ss_pred             ceecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         30 VGRETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        30 Vgv~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      .-.+|||.      ||++.+||++|++|+.++.||+|+|++|...|+|.|..|.||+|
T Consensus       289 anig~~~~~~fEpvHGSAPdi~~~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l  346 (399)
T 1zor_A          289 VLVSPDGVYEFEAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEV  346 (399)
T ss_dssp             EEECTTCCEEEEESSCCCHHHHHHHTTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             eEecCCCCeEEeCCCCcccccchhhhcCCCCccCcHHHHHHHHHHHHhcCcccccchH
Confidence            33478885      99999999999999999999999999999999999998876554

>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1

Probab=98.19  E-value=7.2e-07  Score=68.93  Aligned_cols=45  Identities=13%  Similarity=0.073  Sum_probs=40.4

Q ss_pred             ecCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325         32 RETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA   82 (83)
Q Consensus        32 v~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~   82 (83)
                      ++|++.     ||+..++     +|+ .+.||+|+|++|...|+|.|+||+||++.
T Consensus       245 ig~~~a~fEp~HGSApdi-----aGk-~iANP~A~IlS~ammL~~lg~~d~~~~~~  294 (336)
T 1wpw_A          245 IGDKKALFEPVHGAAFDI-----AGK-NIGNPTAFLLSVSMMYERMYELSNDDRYI  294 (336)
T ss_dssp             ECSSCEEEEESSCCCTTT-----TTS-SCCCTHHHHHHHHHHHHHHHHTTCCTHHH
T ss_pred             ECCCCceEeCCCCCchhh-----CCC-CCcCcHHHHHHHHHHHHHcCccccccchH
Confidence            356665     9999998     898 99999999999999999999999999874

>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}

Probab=96.35  E-value=0.0016  Score=53.19  Aligned_cols=38  Identities=13%  Similarity=0.047  Sum_probs=32.8

Q ss_pred             ecCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhcc
Q psy12325         32 RETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKL   75 (83)
Q Consensus        32 v~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkL   75 (83)
                      ++||+.     ||+..+++     |+ .+.||+|+|+||...|+|.|.-
T Consensus       269 ig~~~a~FEpvHGSAPDIA-----Gk-~iANP~A~IlSaamML~hlG~~  311 (496)
T 2d1c_A          269 IGNEVAIFEAVHGSAPKYA-----GK-NVINPTAVLLSAVMMLRYLEEF  311 (496)
T ss_dssp             ECSSCEEEEESSCCCTTTT-----TS-SCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ECCCCceeeCCCCchhhhc-----CC-CccCcHHHHHHHHHHHHHCCCH
Confidence            356766     99999985     87 9999999999999999998753

>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A

Probab=96.35  E-value=0.0027  Score=49.52  Aligned_cols=37  Identities=19%  Similarity=0.064  Sum_probs=32.4

Q ss_pred             ecCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH-hhc
Q psy12325         32 RETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH-RAK   74 (83)
Q Consensus        32 v~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h-Rgk   74 (83)
                      .+|||.     ||+..++     +|+. +.||+|+|++|.-.|+| .|.
T Consensus       265 ig~~~~~fEpvHGSAPdi-----AGk~-iANP~A~IlS~ammL~~slg~  307 (359)
T 2y3z_A          265 LGRGTPVFEPVHGSAPDI-----AGKG-IANPTAAILSAAMMLEHAFGL  307 (359)
T ss_dssp             EESSCCEEEESSCCCGGG-----TTSS-CSCTHHHHHHHHHHHHHTTCC
T ss_pred             eCCCCceeecCCCChhhh-----CCCC-CcCCHHHHHHHHHHHHHhcCC
Confidence            367776     9999998     8987 99999999999999999 764

>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A

Probab=96.23  E-value=0.0036  Score=48.27  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=32.3

Q ss_pred             ecCCCc--------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325         32 RETQGK--------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK   74 (83)
Q Consensus        32 v~pDG~--------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk   74 (83)
                      ++|||+        ||+..++     +|+. +.||+|+|++|.--|+|.|.
T Consensus       257 ig~~~~~~a~fEp~HGSAPdi-----AGk~-iANP~A~IlS~ammL~~lg~  301 (337)
T 1w0d_A          257 IDATRANPSMFEPVHGSAPDI-----AGQG-IADPTAAIMSVALLLSHLGE  301 (337)
T ss_dssp             ECTTCSSCEEEEESSCCCGGG-----TTSS-CSCCHHHHHHHHHHHHHTTC
T ss_pred             eCCCCCCceEEecCCCChhhh-----CCCC-CcCCHHHHHHHHHHHHHCCC
Confidence            367775        9999998     7887 99999999999999999774

>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*

Probab=96.22  E-value=0.0022  Score=49.79  Aligned_cols=36  Identities=28%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             cCCCc-----e-eehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325         33 ETQGK-----M-IYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK   74 (83)
Q Consensus        33 ~pDG~-----h-GTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk   74 (83)
                      +||+.     | |+..++     +|+. +.||+|+|++|...|+|.|.
T Consensus       263 g~~~a~fEpvH~GSAPdi-----AGk~-iANP~A~IlS~ammL~~lg~  304 (349)
T 3blx_A          263 GRDYAVFEPGSRHVGLDI-----KGQN-VANPTAMILSSTLMLNHLGL  304 (349)
T ss_dssp             ESSCEEECCTTTTSCC-------CCTT-CSCCHHHHHHHHHHHHHHTC
T ss_pred             CCCceeEcCCCCCchhhh-----cCCC-CCCcHHHHHHHHHHHHhcCc
Confidence            56665     8 999998     8987 99999999999999999774

>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B

Probab=96.10  E-value=0.0043  Score=48.29  Aligned_cols=36  Identities=17%  Similarity=0.076  Sum_probs=31.3

Q ss_pred             cCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325         33 ETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK   74 (83)
Q Consensus        33 ~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk   74 (83)
                      +||+.     ||+..++     +|+. +.||+|+|++|.-.|+|.|.
T Consensus       271 g~~~a~fEp~HGSAPdi-----AGk~-iANP~A~IlS~ammL~~lg~  311 (354)
T 3blx_B          271 GHKISIFEAVHGSAPDI-----AGQD-KANPTALLLSSVMMLNHMGL  311 (354)
T ss_dssp             ESSCEEEEECSCCCGGG-----TTTT-CCCTHHHHHHHHHHHHHHTC
T ss_pred             CCCceEEecCCCChhhh-----cCCC-ccCcHHHHHHHHHHHHHcCC
Confidence            55655     9999988     8987 99999999999999999764

>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A

Probab=95.99  E-value=0.0048  Score=47.60  Aligned_cols=36  Identities=17%  Similarity=0.056  Sum_probs=31.4

Q ss_pred             cCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325         33 ETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK   74 (83)
Q Consensus        33 ~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk   74 (83)
                      +|++.     ||+..++     +|+. +.||+|+|++|.-.|+|.|.
T Consensus       249 g~~~a~fEp~HGSAPdi-----aGk~-iANP~A~IlS~ammL~~lg~  289 (333)
T 1x0l_A          249 GDTTAVFEPVHGSAPDI-----AGKG-IANPTAAILSAAMMLDYLGE  289 (333)
T ss_dssp             CSSCEEEEESSCCCGGG-----TTSS-CCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCceEEeCCCCChhhh-----cCCC-CcCcHHHHHHHHHHHHhcCc
Confidence            56665     9999986     8988 99999999999999999874

>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1

Probab=95.87  E-value=0.0047  Score=47.89  Aligned_cols=29  Identities=24%  Similarity=0.269  Sum_probs=27.0

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHh
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHR   72 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hR   72 (83)
                      ||+..++     +|+ .+.||+|+|++|...|+|+
T Consensus       278 HGSAPdi-----AGk-~iANP~A~IlS~ammL~~~  306 (358)
T 1a05_A          278 HGSAPDI-----AGQ-DKANPLATILSVAMMLRHS  306 (358)
T ss_dssp             SCCCGGG-----TTT-TCSCCHHHHHHHHHHHHHT
T ss_pred             CCChhHh-----cCC-CccCcHHHHHHHHHHHHHH
Confidence            9999998     588 9999999999999999994

>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*

Probab=95.69  E-value=0.0069  Score=47.19  Aligned_cols=33  Identities=21%  Similarity=0.146  Sum_probs=30.3

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLD   76 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD   76 (83)
                      ||+..+.     +|+. ..||+|+|++|.--|+|.|++|
T Consensus       284 HGSAPdi-----AGk~-iANP~A~IlS~ammL~~lg~~~  316 (364)
T 3flk_A          284 HGSAPDI-----FGKN-IANPIAMIWSGALMLEFLGQGD  316 (364)
T ss_dssp             SCCCTTT-----TTSS-CCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCchhh-----cCCC-ccCcHHHHHHHHHHHHHhCccc
Confidence            9999984     7887 7999999999999999999887

>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1

Probab=95.49  E-value=0.0084  Score=47.54  Aligned_cols=31  Identities=19%  Similarity=0.097  Sum_probs=28.7

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK   74 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk   74 (83)
                      |||..++     +|+. +.||+|+|++|.-.|+|.|.
T Consensus       345 HGSAPdi-----AGk~-iANP~A~IlS~amML~hlg~  375 (423)
T 1hqs_A          345 HGTAPKY-----AGLD-KVNPSSVILSGVLLLEHLGW  375 (423)
T ss_dssp             CCCCGGG-----TTTT-CSCCHHHHHHHHHHHHHHTC
T ss_pred             CCChhhh-----CCCC-CcCcHHHHHHHHHHHHHcCC
Confidence            9999998     7986 99999999999999999874

>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*

Probab=95.28  E-value=0.0094  Score=47.00  Aligned_cols=31  Identities=19%  Similarity=0.038  Sum_probs=28.4

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK   74 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk   74 (83)
                      |||..+++     |+ .+.||+|+|++|.--|+|.|.
T Consensus       330 HGSAPdiA-----Gk-~iANP~A~IlS~ammL~~lg~  360 (409)
T 2e0c_A          330 HGTAPKYA-----GK-NVANPTGIIKAGELMLRWMGW  360 (409)
T ss_dssp             SCCCGGGT-----TT-TCSCTHHHHHHHHHHHHHHTC
T ss_pred             CCChhhhc-----CC-cccCcHHHHHHHHHHHHhCCC
Confidence            99999985     75 999999999999999999875

>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*

Probab=95.20  E-value=0.011  Score=47.22  Aligned_cols=36  Identities=14%  Similarity=0.004  Sum_probs=30.7

Q ss_pred             cCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHH-HHhhc
Q psy12325         33 ETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGL-QHRAK   74 (83)
Q Consensus        33 ~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL-~hRgk   74 (83)
                      +|++.     |||..++     +|+ .+.||+|+|++|.--| +|.|.
T Consensus       333 g~~~a~fEpvHGSAPdi-----AGk-~iANP~A~IlS~amML~~hlg~  374 (435)
T 1tyo_A          333 GDGIAVAEPVHGTAPKY-----AGK-DLINPSAEILSASLLIGEFMGW  374 (435)
T ss_dssp             CSSCEEEEESSCCCGGG-----TTS-SCSCCHHHHHHHHHHHHTTSCC
T ss_pred             CCCceeeecCCCChHHh-----cCC-CCcCcHHHHHHHHHHHHHHcCC
Confidence            45554     9999998     788 6999999999999999 98763

>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A

Probab=95.18  E-value=0.013  Score=45.48  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=30.6

Q ss_pred             ecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHh
Q psy12325         32 RETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHR   72 (83)
Q Consensus        32 v~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hR   72 (83)
                      .+|||.      ||+..++.     |+ .+.||+|+|++|.--|+|+
T Consensus       272 ig~~~~a~fEpvHGSAPdiA-----Gk-~iANP~A~IlS~ammL~~~  312 (363)
T 1cnz_A          272 LNEQGFGLYEPAGGSAPDIA-----GK-NIANPIAQILSLALLLRYS  312 (363)
T ss_dssp             ECTTSCEEEEESSCCCGGGT-----TT-TCSCCHHHHHHHHHHHHHH
T ss_pred             eCCCCCeEEEcCCCChhhhc-----CC-CccCcHHHHHHHHHHHHHH
Confidence            367774      99999984     87 9999999999999999994

>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}

Probab=94.81  E-value=0.0085  Score=47.67  Aligned_cols=31  Identities=19%  Similarity=0.069  Sum_probs=27.7

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK   74 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk   74 (83)
                      |||..+++     |+ .+.||+|+|++|.--|+|.|.
T Consensus       352 HGSAPdiA-----Gk-~iANP~A~IlS~amML~hlg~  382 (429)
T 2d4v_A          352 HGTAPDIA-----GQ-GKANPSSLILSAVMMLEHLGW  382 (429)
T ss_dssp             CCCCTTTT-----TT-TCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCChhHhc-----CC-CCcCcHHHHHHHHHHHHHcCC
Confidence            99999985     43 899999999999999999875

>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}

Probab=94.32  E-value=0.018  Score=45.54  Aligned_cols=31  Identities=16%  Similarity=0.053  Sum_probs=28.2

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK   74 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk   74 (83)
                      |||..+++     |+ .+.||+|+|++|.--|+|.|.
T Consensus       333 HGSAPdiA-----Gk-~iANP~A~IlS~amML~~lg~  363 (412)
T 2iv0_A          333 HGSAPKYA-----GQ-NKVNPTAEILTGALMFEYIGW  363 (412)
T ss_dssp             SCCCSTTT-----TS-SCSCCHHHHHHHHHHHHHTTC
T ss_pred             CCChhhcC-----CC-cccCcHHHHHHHHHHHHhCCC
Confidence            99999985     75 999999999999999999875

>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...

Probab=92.23  E-value=0.086  Score=41.84  Aligned_cols=31  Identities=19%  Similarity=0.116  Sum_probs=27.7

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK   74 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk   74 (83)
                      ||+..+.     +|+ ...||+|+|++|.--|+|.|.
T Consensus       349 HGSAPdI-----AGk-~iANP~A~IlS~amML~~lg~  379 (427)
T 3dms_A          349 HGTAPKY-----AGK-DYVNPGSEILSAEMMLRHLGW  379 (427)
T ss_dssp             SCCCGGG-----TTS-SCSCCHHHHHHHHHHHHHTTC
T ss_pred             cCChhhh-----cCC-CcCCcHHHHHHHHHHHHhcCC
Confidence            9999984     788 899999999999999999663

>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1

Probab=91.22  E-value=0.11  Score=40.65  Aligned_cols=29  Identities=24%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHh
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHR   72 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hR   72 (83)
                      ||+..++     +|+ ...||+|+|++|.--|+|+
T Consensus       286 HGSAPdI-----AGk-~iANP~A~IlS~ammL~~s  314 (366)
T 1vlc_A          286 GGSAPDI-----AGK-NIANPIAQILSLAMMLEHS  314 (366)
T ss_dssp             SCCCTTT-----TTT-TCSCCHHHHHHHHHHHHHH
T ss_pred             CCchhhc-----CCC-CccCcHHHHHHHHHHHHHH
Confidence            8999887     888 9999999999999999994

>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}

Probab=87.96  E-value=0.47  Score=37.67  Aligned_cols=30  Identities=20%  Similarity=0.105  Sum_probs=26.7

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH-hh
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH-RA   73 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h-Rg   73 (83)
                      ||+..+     .+|+- ..||+|+|++|.--|+| .|
T Consensus       321 HGSAPD-----IAGk~-iANP~A~IlS~amML~~slg  351 (405)
T 3r8w_A          321 HGSAPD-----IAGQD-KANPLATILSAAMLLKYGLG  351 (405)
T ss_dssp             SCCCGG-----GTTTT-CCCCHHHHHHHHHHHHHTTC
T ss_pred             CCChhh-----hCCCC-CCCcHHHHHHHHHHHHhhCc
Confidence            999988     47886 99999999999999999 55

>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A

Probab=87.94  E-value=0.29  Score=38.26  Aligned_cols=30  Identities=20%  Similarity=0.104  Sum_probs=26.3

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhh
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRA   73 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRg   73 (83)
                      ||+..+.     +||- ..||+|+|++|.--|+|-|
T Consensus       292 HGSAPdI-----aGk~-iANP~A~IlS~amML~~lg  321 (366)
T 3ty4_A          292 HGSAPDI-----AGRG-IANPVATFRSVALMLEFMG  321 (366)
T ss_dssp             SCCCTTT-----TTSS-CCCCHHHHHHHHHHHHHTT
T ss_pred             CCChhhc-----CCCC-ccCcHHHHHHHHHHHHHCC
Confidence            8898884     6876 9999999999999999965

>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*

Probab=86.53  E-value=0.49  Score=37.06  Aligned_cols=30  Identities=27%  Similarity=0.152  Sum_probs=26.4

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH-hh
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH-RA   73 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h-Rg   73 (83)
                      ||+.-+.     +|| ...||+|+|++|.--|+| .|
T Consensus       293 HGSAPdI-----AGk-~iANP~A~IlS~amML~~~lg  323 (375)
T 3vmk_A          293 GGSAPDI-----AGQ-GIANPVAQILSAALLLRHSLK  323 (375)
T ss_dssp             SCCCTTT-----TTS-SCSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCchhc-----cCC-CccCcHHHHHHHHHHHHHHCC
Confidence            8998885     687 789999999999999999 55

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	83
d1lwda_	413	c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen	2e-06
d1t0la_	414	c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen	3e-06
d1itwa_	740	c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {	3e-04

>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 316 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 354

>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-06
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 43  TFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA 
Sbjct: 314 RHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAF 354

>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Monomeric isocitrate dehydrogenase
domain: Monomeric isocitrate dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 4/37 (10%), Positives = 10/37 (27%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
            ++  +      + +    A    L+H       P  
Sbjct: 589 VQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKA 625

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1lwda_	413	NADP-dependent isocitrate dehydrogenase {Pig (Sus	97.81
d1t0la_	414	NADP-dependent isocitrate dehydrogenase {Human (Ho	97.72
d1wpwa_	336	3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus	94.72
d1v53a1	356	3-isopropylmalate dehydrogenase, IPMDH {Bacillus c	89.48
d1cnza_	363	3-isopropylmalate dehydrogenase, IPMDH {Salmonella	88.02
d1pb1a_	416	Isocitrate dehydrogenase, ICDH {Escherichia coli [	86.63
d1itwa_	740	Monomeric isocitrate dehydrogenase {Azotobacter vi	85.49

>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.81  E-value=3.4e-06  Score=64.18  Aligned_cols=44  Identities=59%  Similarity=0.933  Sum_probs=42.0

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      ||++.+|+.++..+.+...||+|+|+||.-.|+|.|+.|.+++|
T Consensus       309 HGsap~~ag~~~iagk~iANP~a~IlS~ammL~~lg~~~~~~~l  352 (413)
T d1lwda_         309 HGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDL  352 (413)
T ss_dssp             SCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             cccchhhcchhhcCCccccChHHHHHHHHHHHHHhcccccchHH
Confidence            99999999999999999999999999999999999999987755

>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=8.4e-06  Score=61.38  Aligned_cols=45  Identities=56%  Similarity=0.831  Sum_probs=42.5

Q ss_pred             ceeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         37 KMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        37 ~hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      .||+..+|+.+.+-..+...||+|+|+||.--|+|.|+.|.+++|
T Consensus       308 ~hg~aP~hGsapdiAGk~iANP~A~ILS~amML~~lg~~d~~~~l  352 (414)
T d1t0la_         308 AHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKEL  352 (414)
T ss_dssp             SSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             cccccccccchhccCCccccCcHHHHHHHHHHHHHhcccccchHH
Confidence            489999999999999999999999999999999999999988765

>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.72  E-value=0.0063  Score=44.24  Aligned_cols=32  Identities=19%  Similarity=0.230  Sum_probs=27.9

Q ss_pred             hhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         49 QKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        49 qkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      .+|+-.. ||+|+|+||.--|+|.|++++.+++
T Consensus       262 iaGk~ia-NP~A~Ils~ammL~~lg~~~~~~~~  293 (336)
T d1wpwa_         262 IAGKNIG-NPTAFLLSVSMMYERMYELSNDDRY  293 (336)
T ss_dssp             TTTSSCC-CTHHHHHHHHHHHHHHHHTTCCTHH
T ss_pred             cCCCCCC-ChHHHHHHHHHHHHHhcCcccchHH
Confidence            5787765 9999999999999999999987753

>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Bacillus coagulans [TaxId: 1398]

Probab=89.48  E-value=0.053  Score=39.01  Aligned_cols=36  Identities=8%  Similarity=-0.018  Sum_probs=27.7

Q ss_pred             ceecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH
Q psy12325         30 VGRETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH   71 (83)
Q Consensus        30 Vgv~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h   71 (83)
                      ...++|+.      |||..++.-+.      -.||+|+|+|+.--|+|
T Consensus       265 ~ni~~d~~a~fEp~HGsapdiaGk~------~aNP~a~ils~ammL~~  306 (356)
T d1v53a1         265 ASLRSDRFGMYEPVHGSAPDIAGQG------KANPLGTVLSAALMLRY  306 (356)
T ss_dssp             EEECSSSCEEEEESSCCCGGGTTSS------CCCCHHHHHHHHHHHHH
T ss_pred             ccccCCcceeecCCCCCchhhcCCC------ccCcHHHHHHHHHHHHh
Confidence            33468886      99999876433      27999999998888887

>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.02  E-value=0.2  Score=36.22  Aligned_cols=37  Identities=22%  Similarity=0.092  Sum_probs=28.9

Q ss_pred             ceecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHh
Q psy12325         30 VGRETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHR   72 (83)
Q Consensus        30 Vgv~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hR   72 (83)
                      ...++||.      |||..++.-      +.-.||+|+|+||.--|+|.
T Consensus       270 ~ni~~~~~a~fEp~HGsapdiaG------k~~aNP~a~Ils~ammL~~~  312 (363)
T d1cnza_         270 ASLNEQGFGLYEPAGGSAPDIAG------KNIANPIAQILSLALLLRYS  312 (363)
T ss_dssp             EEECTTSCEEEEESSCCCGGGTT------TTCSCCHHHHHHHHHHHHHH
T ss_pred             eeeeccceEEeccCCCcccccCC------CCccChHHHHHHHHHHHHhh
Confidence            34468886      999998743      23589999999999999883

>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: Isocitrate dehydrogenase, ICDH
species: Escherichia coli [TaxId: 562]

Probab=86.63  E-value=0.15  Score=37.87  Aligned_cols=33  Identities=18%  Similarity=0.113  Sum_probs=26.9

Q ss_pred             eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325         38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLD   76 (83)
Q Consensus        38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD   76 (83)
                      |||.-++.     |+- -.||+|+|.||.--|+|.|..|
T Consensus       339 HGSAPdia-----Gk~-iANP~a~Ils~amML~~lg~~~  371 (416)
T d1pb1a_         339 HGTAPKYA-----GQD-KVNPGSIILSAEMMLRHMGWTE  371 (416)
T ss_dssp             SCCCGGGT-----TSS-CSCCHHHHHHHHHHHHHTTCHH
T ss_pred             CCchhhhC-----CCC-CcCcHHHHHHHHHHHHHCCCHH
Confidence            89999984     443 3799999999999999987543

>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Monomeric isocitrate dehydrogenase
domain: Monomeric isocitrate dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.49  E-value=0.24  Score=40.79  Aligned_cols=48  Identities=10%  Similarity=0.075  Sum_probs=43.5

Q ss_pred             CCCceeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325         34 TQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL   81 (83)
Q Consensus        34 pDG~hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L   81 (83)
                      +-|..|..-+|-+|.++...-.-||++-++||.-+|+|.|+..+|++.
T Consensus       578 ETGAGGSAPKhvqQ~~~E~hLrWDSLGEflAla~sLe~la~~~~n~ka  625 (740)
T d1itwa_         578 ETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKA  625 (740)
T ss_dssp             ESCSSCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ecCCCCchhHHHHHHHhcCccccccHHHHHHHHHHHHHHHhhcCChHH
Confidence            344578999999999999999999999999999999999999999753