Psyllid ID: psy12466
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 680 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y620 | 910 | DNA repair and recombinat | yes | N/A | 0.469 | 0.350 | 0.512 | 2e-87 | |
| Q6PFE3 | 886 | DNA repair and recombinat | yes | N/A | 0.475 | 0.364 | 0.493 | 5e-85 | |
| Q9DG67 | 918 | DNA repair and recombinat | yes | N/A | 0.469 | 0.347 | 0.503 | 1e-84 | |
| P41410 | 852 | DNA repair protein rhp54 | yes | N/A | 0.463 | 0.369 | 0.425 | 3e-70 | |
| P70270 | 747 | DNA repair and recombinat | no | N/A | 0.466 | 0.424 | 0.440 | 1e-68 | |
| O12944 | 733 | DNA repair and recombinat | no | N/A | 0.454 | 0.421 | 0.447 | 2e-68 | |
| Q92698 | 747 | DNA repair and recombinat | no | N/A | 0.463 | 0.421 | 0.443 | 3e-68 | |
| B3MMA5 | 791 | DNA repair and recombinat | N/A | N/A | 0.502 | 0.432 | 0.399 | 8e-67 | |
| P32863 | 898 | DNA repair and recombinat | yes | N/A | 0.452 | 0.342 | 0.393 | 3e-64 | |
| B4KHL5 | 783 | DNA repair and recombinat | N/A | N/A | 0.502 | 0.436 | 0.390 | 1e-63 |
| >sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/326 (51%), Positives = 215/326 (65%), Gaps = 7/326 (2%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
QW N + PLVDV +D +L L+PHQ++G+ FLYE V + GAILADEMGLGK
Sbjct: 273 QWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGK 332
Query: 411 TLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+LIWTL QGPYG PVI+K LIVTP SL +NW EF+KWLG R+ + V+Q +
Sbjct: 333 TLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDH 392
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S VLIISYEML+R+ I + +FDLLICDEGHRLKN K + L+
Sbjct: 393 KVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSC 452
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
KRI+L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P+++E +K LG
Sbjct: 453 EKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELG 512
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS- 648
E R+++L T FILRRT ++ L K E ++ CR LQ LY + + R
Sbjct: 513 ERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCL 572
Query: 649 -----RDSHLSVTHALRKICNHPGLV 669
HL AL+K+CNHP L+
Sbjct: 573 QGLLENSPHLICIGALKKLCNHPCLL 598
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Involved in DNA repair and mitotic recombination. May play an active role in recombination processes in concert with other members of the RAD52 epistasis group. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: - |
| >sp|Q6PFE3|RA54B_MOUSE DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (808), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 163/330 (49%), Positives = 214/330 (64%), Gaps = 7/330 (2%)
Query: 347 EEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEM 406
+E Q N P+VDV +D L L+PHQ+ G+ FLYE V + ++ GAILADEM
Sbjct: 247 DENHQRMFNRHCSPIVDVVIDPHLVHHLRPHQKDGIIFLYECVMGMRAVGKCGAILADEM 306
Query: 407 GLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
GLGKTLQCI+LIWTL QGPYG PVI+K LIVTP SL +NW EF+KWLG R+ + V
Sbjct: 307 GLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTV 366
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+Q +K E+++ S VLIISYEML+R+ I F LLICDEGHRLKN K ++
Sbjct: 367 DQDHKVEEFINSTFHSVLIISYEMLLRSLDQIKTIPFGLLICDEGHRLKNSSIKTTTALS 426
Query: 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ 585
L+ K ++L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P+S++ +
Sbjct: 427 SLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILGSLSSYRKIYEEPIIISREPSSSKEE 486
Query: 586 KSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA 645
+ LGE R+++L + T FILRRT +V L K E ++ CR LQ LY + +
Sbjct: 487 RELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLRSQSV 546
Query: 646 RAS------RDSHLSVTHALRKICNHPGLV 669
R +HL AL+K+CNHP L+
Sbjct: 547 RFCLQGLLENSAHLICIGALKKLCNHPCLL 576
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Involved in DNA repair and mitotic recombination. May play an active role in recombination processes in concert with other members of the RAD52 epistasis group. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/326 (50%), Positives = 220/326 (67%), Gaps = 7/326 (2%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
Q N +G P+VDV VD +++ L+PHQR+G+ FLYE V + GAILADEMGLGK
Sbjct: 280 QCMFNKAGLPVVDVVVDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGK 339
Query: 411 TLQCIALIWTLLRQGPYGM-PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+L+WTLLRQG YG PV+++ LIVTP SL NW EF+KWLG R+ + V+Q +
Sbjct: 340 TLQCISLVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDH 399
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S + V+IISYEML+R+ I EF+LLICDEGHRLKN K +T L+
Sbjct: 400 KVEEFISSPLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSC 459
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+RI+L+GTP+QNDLQEF+ L +F NPGVLGSL +RK +EEPI+ SR P++T+ +K LG
Sbjct: 460 ERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLG 519
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCV------EYW 643
E R+++L + T FILRRT +V L K+E ++ C+ T LQ LY + +
Sbjct: 520 EKRAAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLELYRKLLSSRVISSCL 579
Query: 644 DARASRDSHLSVTHALRKICNHPGLV 669
R HL AL+K+CNHP L+
Sbjct: 580 QGRLENSPHLICIGALKKLCNHPCLL 605
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Involved in DNA repair and mitotic recombination. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P41410|RAD54_SCHPO DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp54 PE=1 SV=2 | Back alignment and function description |
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Score = 266 bits (681), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 199/331 (60%), Gaps = 16/331 (4%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
V V +D L+R+L+PHQ +GV FLY+ V G I+ADEMGLGKTLQCIAL+WTL
Sbjct: 252 VAVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTL 311
Query: 422 LRQGP-YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR-- 478
L+Q P G P I K +I PSSL NW +E KWLG + P+ ++ K+ ++ + +
Sbjct: 312 LKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQ 371
Query: 479 ---------VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
PVLI SYE L + + + E +L+CDEGHRLKN S + + LN+
Sbjct: 372 WASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNV 431
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
++R++LSGTP+QNDL E+F L +FANPG+LGS +EFRKN+E PIL+ R + TE K G
Sbjct: 432 QRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENG 491
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA---- 645
+ + ++LAK FI+RRT+D+ + L K E ++ C + Q SLY + +
Sbjct: 492 DAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINKIL 551
Query: 646 RASRDSHLSVTHALRKICNHPGLVQQPDMME 676
R + L L+KICNHP L+ + +E
Sbjct: 552 RGTGSQPLKAIGLLKKICNHPDLLNLTEDLE 582
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Involved in DNA repair. May have a role in the processing of replication structures during late replication that is different from its role in the repair of radiation damage. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P70270|RAD54_MOUSE DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=1 SV=2 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 201/334 (60%), Gaps = 17/334 (5%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
V V VD LS+VL+PHQR+GV FL+E V G I+ADEMGLGKTLQCI L+WTL
Sbjct: 141 VHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 422 LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--------- 472
LRQ P P I K ++V+PSSL NW +E +KWLG R+ P ++ +K E
Sbjct: 201 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKWLG-GRIQPLAIDGGSKDEIDRKLEGFM 259
Query: 473 DYVYSRV-SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ +RV SP+LIISYE + L+ICDEGHRLKN +++ Y+ + LN +
Sbjct: 260 NQRGARVPSPILIISYETFRLHVGVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSR 319
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+L+SGTP+QNDL E+F L F N G+LG+ EF+K+FE PIL+SR ++EA + GE
Sbjct: 320 RVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKSRDAAASEADRQRGEE 379
Query: 592 RSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-RD 650
R +L ++RRTSD+ + L K E ++ CR TPLQ LY R + R+
Sbjct: 380 RLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPEEELRE 439
Query: 651 SHL-----SVTHALRKICNHPGLVQQPDMMEEEG 679
+ S +L+K+CNHP L+ + EE+G
Sbjct: 440 GKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDG 473
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Involved in DNA repair and mitotic recombination. Functions in the recombinational DNA repair (RAD52) pathway. Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments (By similarity). Deficient mice also show significantly shorter telomeres than wild-type controls, indicating that the protein activity plays an essential role in telomere length maintenance in mammals. Deficiency also resulted in an increased frequency of end-to-end chromosome fusions involving telomeres compared to the controls, suggesting a putative role in telomere capping. Non-homologous end joining (NHEJ) and homologous recombination (HR) represent the two major pathways of DNA double-strand break (DSB) repair in eukaryotic cells. LIG4 and RAD54L cooperate to support cellular proliferation, repair spontaneous DSBs, and prevent chromosome and single chromatid aberrations. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|O12944|RAD54_CHICK DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/326 (44%), Positives = 200/326 (61%), Gaps = 17/326 (5%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
LSRVL+PHQR+GV FL++ V G I+ADEMGLGKTLQCI L+WTLLRQ P
Sbjct: 138 LSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCK 197
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYS------RV- 479
P I K ++V+PSSL NW +E +KWLG R+ P ++ +K E V S RV
Sbjct: 198 PEIEKAMVVSPSSLVRNWYNEVEKWLG-GRIQPLAIDGGSKEEIDRKLVGSMNQRGLRVP 256
Query: 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTP 539
SP+LIISYE + + L+ICDEGHRLKN +++ Y+ + LN +R+L+SGTP
Sbjct: 257 SPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTP 316
Query: 540 LQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKR 599
+QNDL E+F L F N G+LG+ +EF+++FE PIL+ R +++EA++ GE R +L
Sbjct: 317 IQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELISI 376
Query: 600 TAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY------LRCVEYWDARASRDSHL 653
++RRTSD+ + L K E ++ CR TPLQ LY + VE S L
Sbjct: 377 VNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFLKQAKPVEELKEGKINVSSL 436
Query: 654 SVTHALRKICNHPGLVQQPDMMEEEG 679
S +L+K+CNHP L+ + EEEG
Sbjct: 437 SSITSLKKLCNHPALIYDKCVEEEEG 462
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Involved in DNA repair and mitotic recombination. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q92698|RAD54_HUMAN DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 203/336 (60%), Gaps = 21/336 (6%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
V V VD LS+VL+PHQR+GV FL+E V G I+ADEMGLGKTLQCI L+WTL
Sbjct: 141 VHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 422 LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--------- 472
LRQ P P I K ++V+PSSL NW +E KWLG R+ P ++ +K E
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFM 259
Query: 473 DYVYSRVS-PVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ +RVS P+LIISYE + L+ICDEGHRLKN +++ Y+ + LN +
Sbjct: 260 NQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSR 319
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+L+SGTP+QNDL E+F L F N G+LG+ EF+K+FE PIL+ R ++EA + LGE
Sbjct: 320 RVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEE 379
Query: 592 RSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRD- 650
R +L ++RRTSD+ + L K E ++ CR TPLQ LY R + A+ + +
Sbjct: 380 RLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLR--QAKPAEEL 437
Query: 651 -------SHLSVTHALRKICNHPGLVQQPDMMEEEG 679
S LS +L+K+CNHP L+ + EE+G
Sbjct: 438 LEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDG 473
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Involved in DNA repair and mitotic recombination. Functions in the recombinational DNA repair (RAD52) pathway. Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments (By similarity). May play also an essential role in telomere length maintenance and telomere capping in mammalian cells. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila ananassae GN=okr PE=3 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 145/363 (39%), Positives = 206/363 (56%), Gaps = 21/363 (5%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L Q P+ E E + +PS K LV V VD LS +L+PHQR+GV F+YE V +
Sbjct: 121 CNALVLFQPPNYTEHE-RMSMDPS-KVLVHVVVDPLLSNILRPHQREGVRFMYECV-EGK 177
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
D G I+ADEMGLGKTLQC+ L+WTLLRQGP P I K ++V+PSSL NW EF K
Sbjct: 178 KGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKPTINKAIVVSPSSLVKNWEKEFTK 237
Query: 454 WLGLTRMCPYHVNQKNKAEDYVYSRVS--------PVLIISYEMLIRAYQTIVDTEFDLL 505
WL +C + V + S PVL+ISYE + + E ++
Sbjct: 238 WLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLLISYETFRIYAEILCKYEVGMV 297
Query: 506 ICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREF 565
ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +F
Sbjct: 298 ICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADF 357
Query: 566 RKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLV 625
++NFE IL ++ +STE ++ ++ +L I+RRT+ + L K E ++
Sbjct: 358 KRNFENSILRGQNADSTEGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEMVIC 417
Query: 626 CRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMME 676
+ T +Q LY R + + +AS + +T L+KIC+HP L+ Q +
Sbjct: 418 VKLTAIQLQLYTNFLNSDQVRRSLADCNEKASLTALADIT-TLKKICSHPDLIHQKIEAK 476
Query: 677 EEG 679
E+G
Sbjct: 477 EKG 479
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Involved in mitotic DNA repair and meiotic recombination. Functions in the recombinational DNA repair pathway. Essential for interhomolog gene conversion (GC), but may have a less important role in intersister GC than spn-A/Rad51. In the presence of DNA, spn-A/Rad51 enhances the ATPase activity of okr/Rad54. Drosophila ananassae (taxid: 7217) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P32863|RAD54_YEAST DNA repair and recombination protein RAD54 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD54 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 196/363 (53%), Gaps = 55/363 (15%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLD-LE---------------------- 398
V V +D L+++L+PHQ +GV FLY V L D LE
Sbjct: 259 VPVVIDPKLAKILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTES 318
Query: 399 -----------GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447
G I+ADEMGLGKTLQCIAL+WTLLRQGP G +I K +IV PSSL +NW
Sbjct: 319 QKTEQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNW 378
Query: 448 NDEFKKWLGLTRMCPYHVNQKNK----------------AEDYVYSRVSPVLIISYEMLI 491
+E KWLG + P V+ K A+ + V PVLIISYE L
Sbjct: 379 ANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLR 438
Query: 492 RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551
R + + L++ DEGHRLKNG S + + ++ +R++LSGTP+QNDL E+F L
Sbjct: 439 RNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALL 498
Query: 552 DFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDV 611
F+NPG+LGS EFRKNFE PIL R ++T+ + + GE + +L+ + FI+RRT+D+
Sbjct: 499 SFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRTNDI 558
Query: 612 QASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSH-----LSVTHALRKICNHP 666
A L K E ++ PLQ LY + ++ + + L L+K+CNHP
Sbjct: 559 LAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKGVGGSQPLRAIGILKKLCNHP 618
Query: 667 GLV 669
L+
Sbjct: 619 NLL 621
|
Involved in DNA repair and mitotic recombination. Functions in the recombinational DNA repair (RAD52) pathway. Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments. Addition of RAD54 overcomes inhibition of DNA strand exchange by RAD51 bound to substrate dsDNA. Species preference in the RAD51 dissociation and DNA strand exchange assays underlines the importance of specific RAD54-RAD51 interactions. RAD51 is unable to release dsDNA upon ATP hydrolysis, leaving it stuck on the heteroduplex DNA product after DNA strand exchange. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila mojavensis GN=okr PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 203/364 (55%), Gaps = 22/364 (6%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +PS K V V VD LS VL+PHQR+GV F+YE V +
Sbjct: 111 CNALVLYVPPAYTEHE-RMSMDPS-KVQVHVVVDPILSNVLRPHQREGVRFMYECV-EGK 167
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L WTLLRQ P P I K +IV+PSSL NW EF K
Sbjct: 168 RGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIIVSPSSLVKNWEKEFTK 227
Query: 454 WLGLTRMC-----PYHVNQKNKAEDYVYSRVS----PVLIISYEMLIRAYQTIVDTEFDL 504
WL C + E + + + PVL+ISYE + TE +
Sbjct: 228 WLHGRMHCLAMEGGSKEDTTRALEQFAMNTATRCGTPVLLISYETFRLYAHILCKTEVGM 287
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLRE 564
+ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +
Sbjct: 288 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAAD 347
Query: 565 FRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624
F++NFE IL ++ +ST+A++ ++ +L I+RRT+ + L K E ++
Sbjct: 348 FKRNFENSILRGQNADSTDAERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVV 407
Query: 625 VCRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMM 675
+ TP+Q +Y R + + +AS + +T L+K+CNHP L+ +
Sbjct: 408 CVKLTPVQLQIYTNFLKSDQVRRSLADCNEKASLTALADIT-TLKKLCNHPDLIYEKIAA 466
Query: 676 EEEG 679
+E+G
Sbjct: 467 KEKG 470
|
Involved in mitotic DNA repair and meiotic recombination. Functions in the recombinational DNA repair pathway. Essential for interhomolog gene conversion (GC), but may have a less important role in intersister GC than spn-A/Rad51. In the presence of DNA, spn-A/Rad51 enhances the ATPase activity of okr/Rad54. Drosophila mojavensis (taxid: 7230) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 680 | ||||||
| 383847118 | 856 | PREDICTED: DNA repair and recombination | 0.544 | 0.432 | 0.467 | 2e-91 | |
| 241602475 | 680 | DNA repair and recombination protein RAD | 0.469 | 0.469 | 0.508 | 4e-90 | |
| 260802348 | 791 | hypothetical protein BRAFLDRAFT_202887 [ | 0.539 | 0.463 | 0.472 | 2e-89 | |
| 189230031 | 897 | RAD54 homolog B [Xenopus (Silurana) trop | 0.469 | 0.355 | 0.512 | 5e-89 | |
| 148230804 | 895 | RAD54 homolog B [Xenopus laevis] gi|4793 | 0.469 | 0.356 | 0.524 | 7e-89 | |
| 328786654 | 821 | PREDICTED: DNA repair and recombination | 0.45 | 0.372 | 0.519 | 1e-88 | |
| 395512148 | 912 | PREDICTED: DNA repair and recombination | 0.464 | 0.346 | 0.516 | 3e-88 | |
| 321476094 | 1001 | RAD54B meiotic recombination protein [Da | 0.483 | 0.328 | 0.469 | 4e-88 | |
| 345327482 | 1623 | PREDICTED: hypothetical protein LOC10007 | 0.469 | 0.196 | 0.506 | 2e-87 | |
| 380027284 | 717 | PREDICTED: DNA repair and recombination | 0.45 | 0.426 | 0.516 | 5e-87 |
| >gi|383847118|ref|XP_003699202.1| PREDICTED: DNA repair and recombination protein RAD54B-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/385 (46%), Positives = 243/385 (63%), Gaps = 15/385 (3%)
Query: 289 SLPRKSDSGIGSLPCKRPLEESTAE-TLQCNQINSHLSVTHALRKICNHPGLVQQPDVME 347
SLP +S P K+ L+ S + + N + L +TH +P L+ P M
Sbjct: 204 SLPDESSKETIPEPPKKKLKSSNVKPFVPFNSLQQGLKLTH-------NP-LIMPP--MY 253
Query: 348 EEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMG 407
W N K +V+VD L VL+ HQR G+ FLYE + + + + GAILADEMG
Sbjct: 254 TSQNWAENEISKDEKEVSVDACLVNVLRQHQRYGIIFLYECIMGIKTSNYYGAILADEMG 313
Query: 408 LGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ 467
LGKTLQCI L+WTLL++GPYG PV++ VLIVTPSSL +NWN EFK WLG R+CPY VN
Sbjct: 314 LGKTLQCITLVWTLLKKGPYGSPVLKTVLIVTPSSLCNNWNKEFKHWLGFHRLCPYVVNA 373
Query: 468 KNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL 527
KNK +D+ + V+IISY+MLIR + I FDL+ICDEGHRLKN + K +L++ +
Sbjct: 374 KNKLKDFKKQARNSVVIISYDMLIRCEEEIEQINFDLIICDEGHRLKNNEIKAAKLLSNI 433
Query: 528 NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKS 587
N ++RILL+GTP+QNDLQEFF L +F NPG+LGS EF+ +E PI+ S+ P++ + S
Sbjct: 434 NCKRRILLTGTPIQNDLQEFFALVNFVNPGILGSNNEFKNYYENPIVASKCPHAAYSVAS 493
Query: 588 LGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA 647
LG R+++L ++T FILRRT D L SK E ++ CR + Q+ LY + W ++
Sbjct: 494 LGTERATELHEKTRSFILRRTQDTINKYLPSKHELVVFCRLSDEQEKLYSLVTDTWFNKS 553
Query: 648 ----SRDSHLSVTHALRKICNHPGL 668
S HL+V L+KICNHP L
Sbjct: 554 VLPNSNVPHLTVITTLKKICNHPKL 578
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|241602475|ref|XP_002405194.1| DNA repair and recombination protein RAD54B, putative [Ixodes scapularis] gi|215500578|gb|EEC10072.1| DNA repair and recombination protein RAD54B, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 224/338 (66%), Gaps = 19/338 (5%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
QW HN P+VDV VD L+R L+PHQ+QG+ FLYE + ++ D GAILADEMGLGK
Sbjct: 52 QWAHNKKQLPVVDVVVDASLARCLRPHQQQGLVFLYECIMEMRPFDGGGAILADEMGLGK 111
Query: 411 TLQCIALIWTLLRQGPY-GMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI L+WTLLRQGPY G PV+R+++I+TPSSL NW EFKKWL + + Y+V QKN
Sbjct: 112 TLQCITLVWTLLRQGPYGGYPVLRRIIIITPSSLVKNWVKEFKKWLPNSNLRIYYVGQKN 171
Query: 470 KAEDYVYS-RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528
K E ++ + PVLI+SYEM +R ++ + FDLLICDE HRLKN K+ + L
Sbjct: 172 KVEGFLRQPSLYPVLILSYEMYLRVSDSLANINFDLLICDEAHRLKNANIKIAGSLQNLG 231
Query: 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL---------REFRKNFEEPILESRSP 579
I ++IL++GTP+QNDLQEFF L DF NPG+LG FR+ +EEPIL+SR P
Sbjct: 232 ITRKILVTGTPVQNDLQEFFTLIDFCNPGILGKYPYVCQRIGPSSFRRVYEEPILQSRLP 291
Query: 580 NSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRC 639
+TE QK LG+ R+++L++ TA F+LRRT DV S L K E ++ CR T LQ ++Y
Sbjct: 292 QATEEQKELGQARANELSRITALFVLRRTQDVVQSYLPGKAECVVFCRPTSLQLTVYREL 351
Query: 640 VEYWDARASRDS--------HLSVTHALRKICNHPGLV 669
+ +A S HL+ ALRK+CNHP LV
Sbjct: 352 LASNAVQACLSSYLSCDANHHLACILALRKLCNHPSLV 389
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|260802348|ref|XP_002596054.1| hypothetical protein BRAFLDRAFT_202887 [Branchiostoma floridae] gi|229281308|gb|EEN52066.1| hypothetical protein BRAFLDRAFT_202887 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/377 (47%), Positives = 233/377 (61%), Gaps = 10/377 (2%)
Query: 302 PCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPL 361
P P+++ A T + + S T A R G++ P QWK+NP+G+PL
Sbjct: 108 PFTNPMKDKQAATQRKSAGGSGAPQTVAPRFDPTAEGVLVMPRPSPAH-QWKYNPAGQPL 166
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
VDV VD LSR L+PHQR G+ FLY V + GAILAD MGLGKTLQCI +IWTL
Sbjct: 167 VDVVVDPHLSRHLRPHQRDGIIFLYLCVMGMRDHPGLGAILADSMGLGKTLQCITMIWTL 226
Query: 422 LRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480
L+QGPYG PV+ ++LIVTP SL NW EFKKWLG R Y V Q ++ +++ S +
Sbjct: 227 LKQGPYGGKPVLHRILIVTPGSLVKNWVKEFKKWLGNERCKVYAVGQDSRVDEFARSPLY 286
Query: 481 PVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPL 540
PV+IISYEML+R + I FDL++CDEGHRLKN K ++GL+ R+RI+L+GTP+
Sbjct: 287 PVMIISYEMLVRYVRDIEKINFDLIVCDEGHRLKNTNIKTTSSISGLSARRRIVLTGTPI 346
Query: 541 QNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRT 600
QNDLQE + DF NPGVLG + FRK +EEPI+ S P +TEA+K+LG R+ +L++ T
Sbjct: 347 QNDLQELHSIVDFCNPGVLGPITAFRKVYEEPIVRSHQPGATEAEKTLGATRAEELSRLT 406
Query: 601 AGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY--------LRCVEYWDARASRDSH 652
F LRRT DV L K E ++ CR TPLQ +Y L+ Y + H
Sbjct: 407 GQFTLRRTEDVNNKYLPPKVEAVVFCRPTPLQLDIYRKLLCSRVLKSFLYSNRPTDGSLH 466
Query: 653 LSVTHALRKICNHPGLV 669
L AL+K+CN P L+
Sbjct: 467 LMCISALKKLCNDPCLI 483
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|189230031|ref|NP_001121509.1| RAD54 homolog B [Xenopus (Silurana) tropicalis] gi|183986491|gb|AAI66345.1| rad54b protein [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
|---|
Score = 335 bits (859), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 167/326 (51%), Positives = 220/326 (67%), Gaps = 7/326 (2%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
QW +N +G P+VDV VD +L+ L+PHQ++G+ FLYE V + + GAILADEMGLGK
Sbjct: 258 QWAYNKTGLPIVDVVVDPYLAVHLRPHQKEGILFLYECVMGMRVNERFGAILADEMGLGK 317
Query: 411 TLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+LIWTL+RQGPYG PVI+K LIVTP SL NW EF+KWLG R+ + V+Q +
Sbjct: 318 TLQCISLIWTLIRQGPYGGKPVIKKALIVTPGSLVKNWRKEFQKWLGTERIRVFAVDQDH 377
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S + VLIISYEML+R + I +FD++ICDEGHRLKN K + L
Sbjct: 378 KVEEFMKSPLYSVLIISYEMLLRCLEQIQSLDFDVVICDEGHRLKNTSIKTTSALASLTC 437
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
KRI+LSGTP+QNDLQEFF L +F NP LGSL +RK FEEPI+ SR P +T +K+LG
Sbjct: 438 SKRIILSGTPVQNDLQEFFALIEFVNPAALGSLSTYRKIFEEPIIRSREPTATTEEKNLG 497
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA-- 647
E R+++LA+ T FILRRT +V L K E+++ CR + Q LY + + ++
Sbjct: 498 EERAAELARLTGLFILRRTQEVINKFLPPKIESIVFCRPSQFQLDLYRKLLNSRTVKSCL 557
Query: 648 ----SRDSHLSVTHALRKICNHPGLV 669
HL AL+K+CNHP L+
Sbjct: 558 LGSGESSPHLVCIGALKKLCNHPFLL 583
|
Source: Xenopus (Silurana) tropicalis Species: Xenopus (Silurana) tropicalis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|148230804|ref|NP_001085120.1| RAD54 homolog B [Xenopus laevis] gi|47939775|gb|AAH72215.1| MGC81308 protein [Xenopus laevis] | Back alignment and taxonomy information |
|---|
Score = 335 bits (858), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 174/332 (52%), Positives = 225/332 (67%), Gaps = 13/332 (3%)
Query: 348 EEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMG 407
++ QW N SG P+VDV VD +L+ L+PHQ++G+ FLYE V + + GAILADEMG
Sbjct: 253 QQHQWAFNKSGLPIVDVVVDPYLAVHLRPHQKEGILFLYECVMGMRVNERFGAILADEMG 312
Query: 408 LGKTLQCIALIWTLLRQGPYGM-PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN 466
LGKTLQCI+LIWTLLRQGPYG PVI++ LIVTP SL NW EF+KWLG R+ + V+
Sbjct: 313 LGKTLQCISLIWTLLRQGPYGAKPVIKRALIVTPGSLVKNWRKEFQKWLGTERIRVFAVD 372
Query: 467 QKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG 526
Q +K E++V S + VLIISYEML+R + I +FDL+ICDEGHRLKN K +T
Sbjct: 373 QDHKVEEFVNSPLYSVLIISYEMLLRCLEQIESLDFDLVICDEGHRLKNTSIKTTTSLTS 432
Query: 527 LNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQK 586
L KRI+LSGTP+QNDLQEFF L +F NP VLGSL +RK FEEPI+ SR P +T +K
Sbjct: 433 LTCSKRIILSGTPVQNDLQEFFALIEFVNPAVLGSLSTYRKVFEEPIVRSREPTATPEEK 492
Query: 587 SLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR 646
+LGE R+++LA+ T FILRRT +V L K E ++ C+ + Q LY R + ++R
Sbjct: 493 NLGEERAAELARLTGLFILRRTQEVINKFLPPKIENIVFCQPSQFQLDLYRRLL---NSR 549
Query: 647 ASRDS---------HLSVTHALRKICNHPGLV 669
A + HL AL+K+CNHP L+
Sbjct: 550 AVKSCLLGNGENSPHLVCIGALKKLCNHPCLL 581
|
Source: Xenopus laevis Species: Xenopus laevis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|328786654|ref|XP_624551.3| PREDICTED: DNA repair and recombination protein RAD54B-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/310 (51%), Positives = 216/310 (69%), Gaps = 4/310 (1%)
Query: 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422
+V+VD L VL+PHQR G+ FLYE + L + GAILADEMGLGKTLQCI +IWTLL
Sbjct: 219 EVSVDTCLVNVLRPHQRHGIVFLYECIMGLKVPNYFGAILADEMGLGKTLQCITIIWTLL 278
Query: 423 RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPV 482
++GPYG P+++ VLIVTPSSL +NWN EFK WLG R+ PY VN KNK ++ + +
Sbjct: 279 KKGPYGYPILKYVLIVTPSSLCNNWNKEFKHWLGFHRISPYVVNAKNKPNNFKKQIRNSI 338
Query: 483 LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542
+IISYEMLI+ Q I FDL+ICDEGHRLKN K ++++ LN ++RILL+GTP+QN
Sbjct: 339 MIISYEMLIKYQQEIEQIAFDLIICDEGHRLKNNDIKTTKVLSNLNCKRRILLTGTPVQN 398
Query: 543 DLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602
DLQEFF L DF NP +LGS EF+ +E+PI+ S+ PN++ SLG R+++L ++T
Sbjct: 399 DLQEFFALIDFVNPVILGSSSEFKNYYEKPIVASQCPNASCHVISLGTERANELHEKTKC 458
Query: 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA----SRDSHLSVTHA 658
FILRRT ++ L SK E ++ CR + Q+ LY R W +++ + SHL++ A
Sbjct: 459 FILRRTQEIINKYLPSKHELVIFCRLSDEQEDLYSRITNLWFSKSVLPNNNISHLTLITA 518
Query: 659 LRKICNHPGL 668
L+KICNHP L
Sbjct: 519 LKKICNHPEL 528
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|395512148|ref|XP_003760306.1| PREDICTED: DNA repair and recombination protein RAD54B [Sarcophilus harrisii] | Back alignment and taxonomy information |
|---|
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 170/329 (51%), Positives = 222/329 (67%), Gaps = 13/329 (3%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
QW N + PLVDV VD +L L+PHQ++G+ FLYE V + GAILADEMGLGK
Sbjct: 275 QWIFNKNCLPLVDVVVDPYLVHHLRPHQKEGIVFLYECVMGMRMNGRFGAILADEMGLGK 334
Query: 411 TLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+L+WTLLRQG YG P+I+K LIVTP SL +NW EF+KWLG R+ + V+Q +
Sbjct: 335 TLQCISLVWTLLRQGLYGGKPIIKKTLIVTPGSLVTNWKKEFQKWLGSERIKVFTVDQDH 394
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K ED+V S + VL+ISYEML+R I + +FDLLICDEGHRLKN K + GL+
Sbjct: 395 KIEDFVNSPLYSVLVISYEMLLRCLDQIKNIKFDLLICDEGHRLKNSSIKTTTALVGLSC 454
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
KR++L+GTP+QNDLQEF+ L +F NPG+LGSL +RK +EEPI+ SR P++TE +K LG
Sbjct: 455 EKRVILTGTPIQNDLQEFYALIEFVNPGILGSLSSYRKIYEEPIIASREPSATEEEKKLG 514
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASR 649
E R+++L + T FILRRT +V L K E ++ CR LQ LY + + D++A R
Sbjct: 515 EKRAAELTRLTGLFILRRTQEVINKYLPPKIENVVFCRPGRLQIELYRKLL---DSQAVR 571
Query: 650 ---------DSHLSVTHALRKICNHPGLV 669
HL AL+K+CNHP L+
Sbjct: 572 FCLQGVLENSPHLICIGALKKLCNHPCLL 600
|
Source: Sarcophilus harrisii Species: Sarcophilus harrisii Genus: Sarcophilus Family: Dasyuridae Order: Dasyuromorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|321476094|gb|EFX87055.1| RAD54B meiotic recombination protein [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 162/345 (46%), Positives = 231/345 (66%), Gaps = 16/345 (4%)
Query: 335 NHPGLVQQP----DVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVC 390
NHP + P D+ QWK + G +VDV VD LS+ L+PHQR+GV F+YE +
Sbjct: 393 NHPSALVMPRPPTDI-----QWKESQRGTVIVDVVVDPTLSKNLRPHQREGVVFMYECLM 447
Query: 391 DLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPY-GMPVIRKVLIVTPSSLTSNWND 449
+ ++ GAILADEMGLGKTLQCI LIW LL+QGPY G P+I++VLIVTPSSL NW
Sbjct: 448 GFKTPNMYGAILADEMGLGKTLQCITLIWILLQQGPYNGRPIIQRVLIVTPSSLVKNWEK 507
Query: 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDE 509
EF++WLG R+ + +Q+N+ +++ VSPV+++SYEML+R + I FD+++CDE
Sbjct: 508 EFRRWLGRERITVFTADQQNRPIEFLKHLVSPVMVVSYEMLVRCFDEIQQINFDMVVCDE 567
Query: 510 GHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNF 569
GHRLKN +K L++ L+ +++LL+GTP+QNDL+EFF L DF NPG+LGSL FR+ +
Sbjct: 568 GHRLKNAGNKTSSLLSQLDTNRKVLLTGTPVQNDLKEFFSLADFVNPGILGSLSSFRRTY 627
Query: 570 EEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRAT 629
EEPI+ + P E Q+ LGE +S+L+ T+ F+LRRT +V + L K E+++ C+ T
Sbjct: 628 EEPIVALQQPECDEDQRELGESCASELSHLTSQFVLRRTQEVMNAHLPPKVESVIFCKPT 687
Query: 630 PLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPGL 668
+Q +LY ++ R+ + + LS ALRK+CNHP L
Sbjct: 688 CVQVNLYRNVLDSSAVRSILSSTQTGNDQLSFILALRKLCNHPTL 732
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345327482|ref|XP_001506039.2| PREDICTED: hypothetical protein LOC100074424 [Ornithorhynchus anatinus] | Back alignment and taxonomy information |
|---|
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/326 (50%), Positives = 220/326 (67%), Gaps = 7/326 (2%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
QW N SG PLVDV VD +L L+PHQ++G+ FL+E V + GAILADEMGLGK
Sbjct: 882 QWMFNRSGLPLVDVVVDPYLVNHLRPHQKEGILFLFECVMGMRVNGRFGAILADEMGLGK 941
Query: 411 TLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+LIWTLLRQGPYG P+I++ L+VTP SL +NW EF+KWLG R+ + V+Q++
Sbjct: 942 TLQCISLIWTLLRQGPYGGKPIIKQTLVVTPGSLVNNWKKEFQKWLGTERIKVFSVDQEH 1001
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S VLIISYEML+R+ I + +F+LLICDEGHRLKN K + L+
Sbjct: 1002 KVEEFIKSPFYSVLIISYEMLLRSLDQIKNIDFNLLICDEGHRLKNNSIKTTTALISLSC 1061
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+RI+L+GTP+QNDLQEF+ L +F NPG+LGSL +RK +EEPI+ SR P++T +K LG
Sbjct: 1062 DRRIILTGTPVQNDLQEFYALIEFVNPGILGSLSTYRKIYEEPIIRSREPSATREEKELG 1121
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYL-----RCVEY-W 643
E R+++L + T FILRRT +V L K E+++ CR LQ LY R + +
Sbjct: 1122 EKRAAELTRLTGLFILRRTQEVINKYLPPKIESVVFCRPAALQIELYRKLLNSRAISFCL 1181
Query: 644 DARASRDSHLSVTHALRKICNHPGLV 669
HL AL+K+CNHP L+
Sbjct: 1182 QGMLENSPHLVCIGALKKLCNHPCLL 1207
|
Source: Ornithorhynchus anatinus Species: Ornithorhynchus anatinus Genus: Ornithorhynchus Family: Ornithorhynchidae Order: Monotremata Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|380027284|ref|XP_003697358.1| PREDICTED: DNA repair and recombination protein RAD54B-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 160/310 (51%), Positives = 213/310 (68%), Gaps = 4/310 (1%)
Query: 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422
+V++D L VL+PHQR G+ FLYE + L + GAILADEMGLGKTLQCI +IWTLL
Sbjct: 115 EVSIDACLVNVLRPHQRHGIVFLYECIMGLKVPNYFGAILADEMGLGKTLQCITIIWTLL 174
Query: 423 RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPV 482
++GPYG P+++ VLIVTPSSL +NWN EFK WLG R+ PY VN KNK ++ + V
Sbjct: 175 KKGPYGYPILKYVLIVTPSSLCNNWNKEFKHWLGFHRISPYVVNAKNKPNNFKKQIRNSV 234
Query: 483 LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542
+IISYEMLI+ Q I FDL+ICDEGHRLKN K ++++ LN ++RILL+GTP+QN
Sbjct: 235 MIISYEMLIKYRQEIEQIAFDLIICDEGHRLKNNDIKTTKILSNLNCKRRILLTGTPVQN 294
Query: 543 DLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602
DLQEFF L DF NP +LGS EF+ +E+PI+ S+ PN++ SLG R+++L ++T
Sbjct: 295 DLQEFFALIDFVNPVILGSSSEFKNYYEKPIVASQCPNASCHVISLGTERANELYEKTKC 354
Query: 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR----ASRDSHLSVTHA 658
FILRRT ++ L SK E ++ CR + Q+ LY R W + + HL++ A
Sbjct: 355 FILRRTQEIINKYLPSKHELVIFCRLSDEQEDLYSRITNLWFNKNVLPNNNIPHLTLITA 414
Query: 659 LRKICNHPGL 668
L+KICNHP L
Sbjct: 415 LKKICNHPEL 424
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 680 | ||||||
| UNIPROTKB|F1P5M3 | 920 | RAD54B "DNA repair and recombi | 0.469 | 0.346 | 0.503 | 7e-95 | |
| UNIPROTKB|Q9DG67 | 918 | RAD54B "DNA repair and recombi | 0.469 | 0.347 | 0.503 | 7e-95 | |
| UNIPROTKB|Q9Y620 | 910 | RAD54B "DNA repair and recombi | 0.475 | 0.354 | 0.506 | 3.8e-94 | |
| UNIPROTKB|F1MSA4 | 909 | RAD54B "Uncharacterized protei | 0.475 | 0.355 | 0.5 | 1.5e-91 | |
| UNIPROTKB|F1PW14 | 912 | RAD54B "Uncharacterized protei | 0.482 | 0.359 | 0.494 | 1.7e-90 | |
| ZFIN|ZDB-GENE-060810-50 | 917 | rad54b "RAD54 homolog B (S. ce | 0.563 | 0.417 | 0.429 | 1.9e-89 | |
| UNIPROTKB|F1RY50 | 805 | RAD54B "Uncharacterized protei | 0.469 | 0.396 | 0.512 | 4.4e-88 | |
| ASPGD|ASPL0000055935 | 1011 | AN0855 [Emericella nidulans (t | 0.598 | 0.402 | 0.395 | 1.6e-74 | |
| POMBASE|SPAC15A10.03c | 852 | rad54 "DNA-dependent ATPase Ra | 0.563 | 0.449 | 0.391 | 6.5e-67 | |
| MGI|MGI:894697 | 747 | Rad54l "RAD54 like (S. cerevis | 0.516 | 0.469 | 0.427 | 1.1e-66 |
| UNIPROTKB|F1P5M3 RAD54B "DNA repair and recombination protein RAD54B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
Identities = 164/326 (50%), Positives = 220/326 (67%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
Q N +G P+VDV VD +++ L+PHQR+G+ FLYE V + GAILADEMGLGK
Sbjct: 280 QCMFNKAGLPVVDVVVDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGK 339
Query: 411 TLQCIALIWTLLRQGPYGM-PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+L+WTLLRQG YG PV+++ LIVTP SL NW EF+KWLG R+ + V+Q +
Sbjct: 340 TLQCISLVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDH 399
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S + V+IISYEML+R+ I EF+LLICDEGHRLKN K +T L+
Sbjct: 400 KVEEFISSPLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSC 459
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+RI+L+GTP+QNDLQEF+ L +F NPGVLGSL +RK +EEPI+ SR P++T+ +K LG
Sbjct: 460 ERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLG 519
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEY------W 643
E R+++L + T FILRRT +V L K+E ++ C+ T LQ LY + +
Sbjct: 520 EKRAAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLELYQKLLSSRVISSCL 579
Query: 644 DARASRDSHLSVTHALRKICNHPGLV 669
R HL AL+K+CNHP L+
Sbjct: 580 QGRLENSPHLICIGALKKLCNHPCLL 605
|
|
| UNIPROTKB|Q9DG67 RAD54B "DNA repair and recombination protein RAD54B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
Identities = 164/326 (50%), Positives = 220/326 (67%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
Q N +G P+VDV VD +++ L+PHQR+G+ FLYE V + GAILADEMGLGK
Sbjct: 280 QCMFNKAGLPVVDVVVDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGK 339
Query: 411 TLQCIALIWTLLRQGPYGM-PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+L+WTLLRQG YG PV+++ LIVTP SL NW EF+KWLG R+ + V+Q +
Sbjct: 340 TLQCISLVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDH 399
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S + V+IISYEML+R+ I EF+LLICDEGHRLKN K +T L+
Sbjct: 400 KVEEFISSPLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSC 459
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+RI+L+GTP+QNDLQEF+ L +F NPGVLGSL +RK +EEPI+ SR P++T+ +K LG
Sbjct: 460 ERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLG 519
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEY------W 643
E R+++L + T FILRRT +V L K+E ++ C+ T LQ LY + +
Sbjct: 520 EKRAAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLELYRKLLSSRVISSCL 579
Query: 644 DARASRDSHLSVTHALRKICNHPGLV 669
R HL AL+K+CNHP L+
Sbjct: 580 QGRLENSPHLICIGALKKLCNHPCLL 605
|
|
| UNIPROTKB|Q9Y620 RAD54B "DNA repair and recombination protein RAD54B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 800 (286.7 bits), Expect = 3.8e-94, Sum P(3) = 3.8e-94
Identities = 167/330 (50%), Positives = 217/330 (65%)
Query: 347 EEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEM 406
++ QW N + PLVDV +D +L L+PHQ++G+ FLYE V + GAILADEM
Sbjct: 269 DKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEM 328
Query: 407 GLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
GLGKTLQCI+LIWTL QGPYG PVI+K LIVTP SL +NW EF+KWLG R+ + V
Sbjct: 329 GLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTV 388
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+Q +K E+++ S VLIISYEML+R+ I + +FDLLICDEGHRLKN K +
Sbjct: 389 DQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALI 448
Query: 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ 585
L+ KRI+L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P+++E +
Sbjct: 449 SLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEE 508
Query: 586 KSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA 645
K LGE R+++L T FILRRT ++ L K E ++ CR LQ LY + +
Sbjct: 509 KELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV 568
Query: 646 R------ASRDSHLSVTHALRKICNHPGLV 669
R HL AL+K+CNHP L+
Sbjct: 569 RFCLQGLLENSPHLICIGALKKLCNHPCLL 598
|
|
| UNIPROTKB|F1MSA4 RAD54B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 800 (286.7 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 165/330 (50%), Positives = 219/330 (66%)
Query: 347 EEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEM 406
++ QW N + P+VDV +D L L+PHQ++G++FLYE V + GAILADEM
Sbjct: 269 DKNHQWLFNKNCFPVVDVVIDPHLVYYLRPHQKEGITFLYECVMGMRVNGRCGAILADEM 328
Query: 407 GLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
GLGKTLQCI+LIWTL QGPYG P+++K LIVTP SL +NW EF+KWLG+ R+ + V
Sbjct: 329 GLGKTLQCISLIWTLQCQGPYGGKPIVKKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTV 388
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+Q +K E++ S VLIISYEML+R+ I + +FDLLICDEGHRLKN K +
Sbjct: 389 DQDHKVEEFTKSPFYSVLIISYEMLLRSLDQIKNVKFDLLICDEGHRLKNSTIKTTTALI 448
Query: 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ 585
L+ KRI+L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P+++E +
Sbjct: 449 SLSCEKRIILTGTPVQNDLQEFFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEE 508
Query: 586 KSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA 645
+ LGE R+++L T FILRRT +V L K E ++ CR LQ +LY + +
Sbjct: 509 RELGEQRAAELTCLTGLFILRRTQEVINQYLPPKIENVVFCRPGALQIALYRKLLNSQAV 568
Query: 646 R------ASRDSHLSVTHALRKICNHPGLV 669
R SHL AL+K+CNHP L+
Sbjct: 569 RFCLQGLLENTSHLICIGALKKLCNHPCLL 598
|
|
| UNIPROTKB|F1PW14 RAD54B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 167/338 (49%), Positives = 216/338 (63%)
Query: 339 LVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE 398
++ +PD QW N G P+VDV +D L L+PHQ++G+ FLYE V +
Sbjct: 265 VMSRPD---NNHQWTFNKKGFPVVDVVIDPHLVYHLRPHQKEGIMFLYECVMGMRVNGRC 321
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGL 457
GAILADEMGLGKTLQCI+LIWTL QGPYG PV++K LIVTP SL +NW EF+KWLG
Sbjct: 322 GAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVVKKTLIVTPGSLVNNWRKEFQKWLGS 381
Query: 458 TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK 517
R+ + V+Q +K E++ S VLIISYEML+R+ I + +F LLICDEGHRLKN
Sbjct: 382 ERIKIFPVDQDHKVEEFTRSPFYSVLIISYEMLLRSLDQIKNVKFGLLICDEGHRLKNSA 441
Query: 518 SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESR 577
K + L+ KR++L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR
Sbjct: 442 IKTTAALISLSCEKRVILTGTPVQNDLQEFFALIDFVNPGILGSLSFYRKVYEEPIIISR 501
Query: 578 SPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYL 637
P+++E +K LGE R+ +L T FILRRT +V L K E ++ CR LQ LY
Sbjct: 502 QPSASEEEKKLGEKRAVELTCLTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYR 561
Query: 638 RCVEYWDAR------ASRDSHLSVTHALRKICNHPGLV 669
+ + R HL AL+K+CNHP L+
Sbjct: 562 KLLNSQAVRFCLQGLLGNSPHLICIGALKKLCNHPCLL 599
|
|
| ZFIN|ZDB-GENE-060810-50 rad54b "RAD54 homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
Identities = 171/398 (42%), Positives = 247/398 (62%)
Query: 284 DSGIPSLPRKSDSGIGSLPCKRPLEES-TAETLQCNQI-NSHLSVTHAL-RKICNHPGLV 340
D+ + +P +S + + P RP+ +S T L+ + +S L R N PG +
Sbjct: 218 DAAV-EIPAESPT-VSKTPAYRPVSKSFTKPALKGGALTDSELDKPICKPRYDPNAPGAL 275
Query: 341 QQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGA 400
P + QW++N SG PLVDV +D L+ L+PHQ++GV FLYE + + GA
Sbjct: 276 VMPRPTADH-QWQYNKSGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGA 334
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTR 459
ILADEMGLGKTLQC+ ++WTLLRQGPYG PV+++ L+V P SL NW EF KWLG R
Sbjct: 335 ILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRER 394
Query: 460 MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK 519
+ Y V+Q ++ ED+V S + VL+ISYEML+R+ + + +F +LICDEGHRLKN K
Sbjct: 395 ISVYTVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIK 454
Query: 520 LYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSP 579
+T L+ +R++L+GTP+QNDLQEF+ + +F NPG+LG+ +RK +EEPIL SR P
Sbjct: 455 TAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSRQP 514
Query: 580 NSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRC 639
+ TE ++ +GE R+++L + T F LRRT ++ L+ + E + C+ T LQ LY
Sbjct: 515 SCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVL 574
Query: 640 VEYWDARA--------SRDSHLSVTHALRKICNHPGLV 669
+ RA + HL +AL+K+CNHP L+
Sbjct: 575 LSTRPIRACLSGSHTYTHSPHLVCINALKKLCNHPALL 612
|
|
| UNIPROTKB|F1RY50 RAD54B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 167/326 (51%), Positives = 212/326 (65%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
QW N + P+VDV +D L L+PHQR+G+ FLYE V + GAILADEMGLGK
Sbjct: 169 QWMFNKNHFPIVDVVIDPHLVYHLRPHQREGIIFLYECVMGMRVNGRCGAILADEMGLGK 228
Query: 411 TLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+LIWTL QGPYG PVI+K LIVTP SL +NW EF+KWLG R+ + V+ +
Sbjct: 229 TLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDPDH 288
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E++ S + VLIISYEML+R+ I + +FDLLICDEGHRLKN K + L
Sbjct: 289 KVEEFTKSPLYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALFSLPC 348
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
KRI+L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P++++ +K LG
Sbjct: 349 EKRIILTGTPVQNDLQEFFSLIDFVNPGILGSLSCYRKIYEEPIITSRQPSASQEEKELG 408
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR--- 646
E R+ +L T FILRRT +V L K E ++ CR LQ LY + + R
Sbjct: 409 ERRACELTCLTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQAVRFCL 468
Query: 647 ---ASRDSHLSVTHALRKICNHPGLV 669
SHL AL+K+CNHP L+
Sbjct: 469 QGLMENSSHLICIGALKKLCNHPCLL 494
|
|
| ASPGD|ASPL0000055935 AN0855 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
Identities = 171/432 (39%), Positives = 245/432 (56%)
Query: 260 TEFDLLICDEKSLLKPP-SGNSPG-NDSGIPSLPRKSDSGIGSLP--CKRPLEESTAETL 315
T +L+ EK + + S SPG ++ + + + GS+ KRPL EST +
Sbjct: 191 TSVPVLMSREKDISRSEISAPSPGLAETRVKESQAANLASRGSISGAYKRPLLESTV--M 248
Query: 316 QCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLK 375
++ + H ++ PG + +M+ G P GK +VDV VD L++ L+
Sbjct: 249 PAASLDEP-TPRHDPKQ----PGAL----IMKRPGS---APKGKRIVDVVVDPILAKHLR 296
Query: 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP-Y-GMPVIR 433
PHQR+GV FLYE V + S + EGAILAD+MGLGKTLQ I L+WTLL+Q P Y PVI+
Sbjct: 297 PHQREGVKFLYECVMGMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIYEAAPVIK 356
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIR 492
K LIV P +L +NW EF+KWLG R+ + + K K D+ + ++I+ YE L
Sbjct: 357 KALIVCPVTLINNWRREFRKWLGNERIGVFVFDDKRKRLTDFTMGKAYSIMIVGYEKLRS 416
Query: 493 AYQTIV-DTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551
+ + D++I DEGHRLK ++K + + LN KRI+LSGTP+QNDL+EFF
Sbjct: 417 VQEGLARGNGVDIVIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAV 476
Query: 552 DFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDV 611
D NPGVLGS + F K FE PI+ SR P +TE GE R+ +L + T+ F+LRRT+D+
Sbjct: 477 DLVNPGVLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARNEELRELTSQFMLRRTADI 536
Query: 612 QASLLNSKRETLLVCRATPLQQSLY---LRCVEYWDARASRDSHLSVTHALRKICNHPGL 668
A L K E +L C+ T Q +Y L + A + +S L + L+K+CN P L
Sbjct: 537 LADYLPPKTEYVLFCKPTNTQAKIYQNVLASPVFQGALGNSESALQLITILKKLCNSPSL 596
Query: 669 VQQPDMMEEEGQ 680
+ D E+ +
Sbjct: 597 LSLKDANEKPSE 608
|
|
| POMBASE|SPAC15A10.03c rad54 "DNA-dependent ATPase Rad54/Rhp54" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 159/406 (39%), Positives = 233/406 (57%)
Query: 292 RKSDSGIGSLPCKRPLEESTAETLQ--CNQINSHLSVTHALRKICNHPGLVQQPDVMEEE 349
RK D + + K+ + +S E+ C ++ S + I ++ ++P+ ++
Sbjct: 179 RKKDELLKNRKGKKEISDSEPESDHDSCVSTDTVASCSTEQSLITSNTSKHRRPNKSLKD 238
Query: 350 --GQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMG 407
G K P P V V +D L+R+L+PHQ +GV FLY+ V G I+ADEMG
Sbjct: 239 LLGIQKEKPPPPP-VAVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMG 297
Query: 408 LGKTLQCIALIWTLLRQGPY-GMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN 466
LGKTLQCIAL+WTLL+Q P G P I K +I PSSL NW +E KWLG + P+ ++
Sbjct: 298 LGKTLQCIALLWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILD 357
Query: 467 QKNKAEDY---------VYSR--VSPVLIISYEMLIRAY-QTIVDTEFDLLICDEGHRLK 514
K+ ++ V+ R PVLI SYE L R+Y + + + E +L+CDEGHRLK
Sbjct: 358 GKSSKQELIMALQQWASVHGRQVTRPVLIASYETL-RSYVEHLNNAEIGMLLCDEGHRLK 416
Query: 515 NGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPIL 574
N S + + LN+++R++LSGTP+QNDL E+F L +FANPG+LGS +EFRKN+E PIL
Sbjct: 417 NSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPIL 476
Query: 575 ESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQS 634
+ R + TE K G+ + ++LAK FI+RRT+D+ + L K E ++ C + Q S
Sbjct: 477 KGRDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLS 536
Query: 635 LYLRCVEYWDA----RASRDSHLSVTHALRKICNHPGLVQQPDMME 676
LY + + R + L L+KICNHP L+ + +E
Sbjct: 537 LYKHFITSPEINKILRGTGSQPLKAIGLLKKICNHPDLLNLTEDLE 582
|
|
| MGI|MGI:894697 Rad54l "RAD54 like (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 159/372 (42%), Positives = 217/372 (58%)
Query: 326 VTHALRKICNHPGLV-QQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSF 384
V AL LV +P + Q K + P V V VD LS+VL+PHQR+GV F
Sbjct: 105 VRRALHDPLEEGALVLYEPPPLSAHDQLKLDKEKLP-VHVVVDPILSKVLRPHQREGVKF 163
Query: 385 LYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444
L+E V G I+ADEMGLGKTLQCI L+WTLLRQ P P I K ++V+PSSL
Sbjct: 164 LWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIEKAVVVSPSSLV 223
Query: 445 SNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYSR----VSPVLIISYEMLIRAY 494
NW +E +KWLG R+ P ++ K+ K E ++ R SP+LIISYE
Sbjct: 224 KNWYNEVEKWLG-GRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHV 282
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ L+ICDEGHRLKN +++ Y+ + LN +R+L+SGTP+QNDL E+F L F
Sbjct: 283 GVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFV 342
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
N G+LG+ EF+K+FE PIL+SR ++EA + GE R +L ++RRTSD+ +
Sbjct: 343 NSGILGTAHEFKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSK 402
Query: 615 LLNSKRETLLVCRATPLQQSLYLRCV-------EYWDARASRDSHLSVTHALRKICNHPG 667
L K E ++ CR TPLQ LY R + E + + S S S+T +L+K+CNHP
Sbjct: 403 YLPVKIEQVVCCRLTPLQTELYKRFLRQAKPEEELREGKMSVSSLSSIT-SLKKLCNHPA 461
Query: 668 LVQQPDMMEEEG 679
L+ + EE+G
Sbjct: 462 LIYDKCVAEEDG 473
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9Y620 | RA54B_HUMAN | 3, ., 6, ., 4, ., - | 0.5122 | 0.4691 | 0.3505 | yes | N/A |
| Q9DG67 | RA54B_CHICK | 3, ., 6, ., 4, ., - | 0.5030 | 0.4691 | 0.3474 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 680 | |||
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 3e-77 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 3e-48 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 5e-35 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 9e-27 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-21 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 2e-11 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 4e-08 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 5e-07 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 4e-05 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 4e-05 | |
| COG4096 | 875 | COG4096, HsdR, Type I site-specific restriction-mo | 0.001 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 0.002 | |
| PRK04914 | 956 | PRK04914, PRK04914, ATP-dependent helicase HepA; V | 0.004 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 3e-77
Identities = 109/313 (34%), Positives = 161/313 (51%), Gaps = 32/313 (10%)
Query: 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVL 436
+Q +GV++L + G ILADEMGLGKTLQ IAL+ T L++G L
Sbjct: 1 YQLEGVNWLISLESNGL-----GGILADEMGLGKTLQTIALLATYLKEGKD---RRGPTL 52
Query: 437 IVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIR 492
+V P S NW +EF+KW R+ YH + + +++ V+I +YE+L +
Sbjct: 53 VVCPLSTLHNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVLRK 112
Query: 493 AYQTIVDT----EFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
+ ++ E+D ++ DE HRLKN KSKLY+ + L R R+LL+GTP+QN+L+E +
Sbjct: 113 -DKKLLSLLNKVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELW 171
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F PG GS + F + F PI + ++ G+ ++L K F+LRRT
Sbjct: 172 ALLNFLRPGPFGSFKVFEEWFNIPIA--NTADNKNKNLEKGKEGINRLHKLLKPFLLRRT 229
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA---RASRDSHLSVTHA------ 658
DV+ SL K E +L C + Q+ LY + + A +V A
Sbjct: 230 KDDVEKSLPP-KTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVGIASLLNLI 288
Query: 659 --LRKICNHPGLV 669
LRKICNHP L
Sbjct: 289 MQLRKICNHPYLF 301
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 182 bits (462), Expect = 3e-48
Identities = 152/547 (27%), Positives = 229/547 (41%), Gaps = 82/547 (14%)
Query: 188 RRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS-------RVS 240
R I RVLI+ P +L + W E + V K +
Sbjct: 129 LRGEIKRVLILVPKTLRAQWVVELLEKFN----IRLAVLDKEGLRYLLKQYDAYNPFSTE 184
Query: 241 PVLIISYEMLIRAYQTIVD-------TEFDLLICDEKSLLKPPSGNSPGNDSGIP----- 288
+++IS ++ R+ + E DLL+ DE L G
Sbjct: 185 DLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLEYELL 244
Query: 289 -SLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALR----------KICNHP 337
L K S + L K L +T E L+ + + L + LR +
Sbjct: 245 KQLAEKIPSKLLDL--KVLLLSATPEQLKEEDLFARLRLLDPLRLADLSQILEKFVRETL 302
Query: 338 GLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDL 397
L + E + + L++ LS L+P+Q +GV++L E L S +L
Sbjct: 303 KLSARDLKDELKELLAELRLSEDLLNAPEPVDLSAELRPYQLEGVNWLSEL---LRS-NL 358
Query: 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGL 457
G ILAD+MGLGKT+Q IAL+ +LL + LIV P+SL SNW EF+K+
Sbjct: 359 LGGILADDMGLGKTVQTIALLLSLLESIKVYLG---PALIVVPASLLSNWKREFEKFAPD 415
Query: 458 TRMCPYHVNQKNKAE----------DYVYSRVSPVLIISYEMLIRAYQTIV---DTEFDL 504
R+ + +K++ + + V+I +YE+L R E+D
Sbjct: 416 LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDR 475
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLND-FANPGVLG-SL 562
++ DE HR+KN +S + + L R+ L+GTPL+N L E + L F NPG+LG S
Sbjct: 476 VVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSF 535
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-SDVQ-ASLLNSKR 620
F + FE+PI EA+ EL L K + FILRRT DV+ L K
Sbjct: 536 AIFTRLFEKPIQAEEDIGPLEAR----ELGIELLRKLLSPFILRRTKEDVEVLKELPPKI 591
Query: 621 ETLLVCRATPLQQSLY----------LRCVEY-------WDARASRDSH-LSVTHALRKI 662
E +L C + Q+ LY + +E + + + L++ LR+I
Sbjct: 592 EKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651
Query: 663 CNHPGLV 669
CNHP LV
Sbjct: 652 CNHPALV 658
|
Length = 866 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 5e-35
Identities = 92/282 (32%), Positives = 140/282 (49%), Gaps = 33/282 (11%)
Query: 401 ILADEMGLGKTLQCIALIWTLLR----QGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLG 456
ILADEMGLGKTLQ I+L+ L GP+ ++V P S NW +E +++
Sbjct: 192 ILADEMGLGKTLQTISLLGYLHEYRGITGPH--------MVVAPKSTLGNWMNEIRRFCP 243
Query: 457 LTRMCPYHVNQKNKA---EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513
+ R +H N + +A E+ + + V + S+EM I+ + + +I DE HR+
Sbjct: 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRI 303
Query: 514 KNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPI 573
KN S L + M + R+L++GTPLQN+L E + L +F P + S F + F+
Sbjct: 304 KNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ--- 360
Query: 574 LESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR-TSDVQASLLNSKRETLLVCRATPLQ 632
S E + E+ QL K F+LRR SDV+ L K+ET+L + +Q
Sbjct: 361 ------ISGENDQ--QEV-VQQLHKVLRPFLLRRLKSDVEKG-LPPKKETILKVGMSQMQ 410
Query: 633 QSLYLRC----VEYWDARASRDSHLSVTHALRKICNHPGLVQ 670
+ Y ++ +A R L++ LRK CNHP L Q
Sbjct: 411 KQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQ 452
|
Length = 1033 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-27
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQ 424
++ F L+P+Q++ + L + D+ ILA G GKTL + + L R
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDV--------ILAAPTGSGKTLAALLPALEALKRG 52
Query: 425 GPYGMPVIRKVLIVTP-SSLTSNWNDEFKKWL---GLTRMCPYHVNQKNKAEDYVYSRVS 480
+VL++ P L W +E KK GL + Y + K + + S +
Sbjct: 53 KG------GRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKT 106
Query: 481 PVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNG--KSKLYELMTGLN-IRKRILL 535
+L+ + L+ + + + DL+I DE HRL +G +L +L+ L + +LL
Sbjct: 107 DILVTTPGRLLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLL 166
Query: 536 SGTP---LQNDLQEFF 548
S TP ++N L+ F
Sbjct: 167 SATPPEEIENLLELFL 182
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-21
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW-NDEFKKWLG 456
+LA G GKTL + I LL G +VL++ P+ +N + K+ G
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGG-----QVLVLAPTRELANQVAERLKELFG 55
Query: 457 L-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICDEGHRL 513
++ K ++ + S + +++ + L+ + + + DLLI DE HRL
Sbjct: 56 EGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRL 115
Query: 514 KNGKSKLYELMTGLNIRK---RILLSGTP 539
N L L L + K +LLS TP
Sbjct: 116 LNQGFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 183 HQEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED----YVYSR 238
+ K+RR L+V P S NW +EF+KW R+ YH + + +++
Sbjct: 42 KEGKDRRG---PTLVVCPLSTLHNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLD 98
Query: 239 VSPVLIISYEMLIRAYQTIVDT----EFDLLICDE 269
V+I +YE+L + + ++ E+D ++ DE
Sbjct: 99 TYDVVITTYEVLRK-DKKLLSLLNKVEWDRVVLDE 132
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 168 KTEVNPLILPKPIVDHQEKNRRSYILRVLIVTPS-SLTSNWNDEFKKWL---GLTRMCPY 223
KT L P ++ +R RVL++ P+ L W +E KK GL + Y
Sbjct: 37 KT----LAALLPALEA---LKRGKGGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLY 89
Query: 224 HVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDE 269
+ K + + S + +L+ + L+ + + + DL+I DE
Sbjct: 90 GGDSKREQLRKLESGKTDILVTTPGRLLDLLENDKLSLSNVDLVILDE 137
|
Length = 201 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 44/207 (21%), Positives = 70/207 (33%), Gaps = 42/207 (20%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGL-------GKTLQCIALIWTLLRQG 425
L+P+Q + + L + G+ GKT+ I L
Sbjct: 36 ELRPYQEEALD------------ALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---- 79
Query: 426 PYGMPVIRKVLIVTPSS-LTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSPVL 483
R L++ P+ L W + KK+L L + Y +K + V
Sbjct: 80 ------KRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGEKE-------LEPAKVT 126
Query: 484 IISYEMLIR--AYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
+ + + L R + EF L+I DE H L + + R+ L+ TP +
Sbjct: 127 VATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLS-AAYPRLGLTATPER 185
Query: 542 NDLQEFFYLNDFANPGVLG-SLREFRK 567
D L D P V SL+E
Sbjct: 186 EDGGRIGDLFDLIGPIVYEVSLKELID 212
|
Length = 442 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.7 bits (110), Expect = 4e-05
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 182 DHQEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--------- 232
++ + Y+ LIV P+SL SNW EF+K+ R+ + +K++ +
Sbjct: 380 LSLLESIKVYLGPALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDL 439
Query: 233 -DYVYSRVSPVLIISYEMLIRAYQTIV---DTEFDLLICDE 269
+ V+I +YE+L R E+D ++ DE
Sbjct: 440 LKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDE 480
|
Length = 866 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 168 KTEVNPLILPKPIVDHQEKNRRSYILRVLIVTPSSLTSNW-NDEFKKWLGL-TRMCPYHV 225
KT L PI++ + + +VL++ P+ +N + K+ G ++
Sbjct: 13 KT----LAALLPILELLDSLKG---GQVLVLAPTRELANQVAERLKELFGEGIKVGYLIG 65
Query: 226 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICDE 269
K ++ + S + +++ + L+ + + + DLLI DE
Sbjct: 66 GTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDE 111
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|226581 COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 26/159 (16%)
Query: 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422
+D + + +Q + RV + S A+L G GKT IA+I L+
Sbjct: 155 LAYIDIDSAIGPRYYQIIAIR----RVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLI 210
Query: 423 RQGPYGMPVIRKVL-IVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVS 480
+ G +++VL + ++L F+ +L T+M NK ED S
Sbjct: 211 KSG-----WVKRVLFLADRNALVDQAYGAFEDFLPFGTKM--------NKIEDKKGDTSS 257
Query: 481 PVLIISYEMLIRAYQTIVDT-------EFDLLICDEGHR 512
+ + +Y+ + + D FDL++ DE HR
Sbjct: 258 EIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR 296
|
Length = 875 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA---EDYVYSRVSPVLIISYEMLIR 252
++V P S NW +E +++ + R +H N + +A E+ + + V + S+EM I+
Sbjct: 223 MVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIK 282
Query: 253 AYQTIVDTEFDLLICDEKSLLK 274
+ + +I DE +K
Sbjct: 283 EKTALKRFSWRYIIIDEAHRIK 304
|
Length = 1033 |
| >gnl|CDD|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.004
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 26/155 (16%)
Query: 402 LADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGL---- 457
LADE+GLGKT++ +I + +Q G +VLI+ P +L W E + L
Sbjct: 174 LADEVGLGKTIEA-GMI--IHQQLLTGR--AERVLILVPETLQHQWLVEMLRRFNLRFSL 228
Query: 458 ---TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIR---AYQTIVDTEFDLLICDEGH 511
R + N E ++I S + L R + + E+DLL+ DE H
Sbjct: 229 FDEERYAEAQHDADNPFET------EQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAH 282
Query: 512 RL---KNGKSKLYELMTGL--NIRKRILLSGTPLQ 541
L + S+ Y+++ L I +LL+ TP Q
Sbjct: 283 HLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQ 317
|
Length = 956 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 680 | |||
| KOG0387|consensus | 923 | 100.0 | ||
| KOG0385|consensus | 971 | 100.0 | ||
| KOG0391|consensus | 1958 | 100.0 | ||
| KOG0392|consensus | 1549 | 100.0 | ||
| KOG0388|consensus | 1185 | 100.0 | ||
| KOG0389|consensus | 941 | 100.0 | ||
| KOG0384|consensus | 1373 | 100.0 | ||
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0390|consensus | 776 | 100.0 | ||
| KOG0386|consensus | 1157 | 100.0 | ||
| KOG1015|consensus | 1567 | 100.0 | ||
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| KOG4439|consensus | 901 | 100.0 | ||
| KOG1016|consensus | 1387 | 100.0 | ||
| KOG1002|consensus | 791 | 100.0 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1000|consensus | 689 | 100.0 | ||
| KOG0383|consensus | 696 | 99.98 | ||
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.97 | |
| KOG1001|consensus | 674 | 99.96 | ||
| KOG0298|consensus | 1394 | 99.91 | ||
| KOG0387|consensus | 923 | 99.88 | ||
| KOG0390|consensus | 776 | 99.86 | ||
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.85 | |
| KOG0385|consensus | 971 | 99.81 | ||
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.76 | |
| KOG0392|consensus | 1549 | 99.75 | ||
| KOG1002|consensus | 791 | 99.74 | ||
| KOG0389|consensus | 941 | 99.73 | ||
| KOG1016|consensus | 1387 | 99.73 | ||
| KOG1015|consensus | 1567 | 99.73 | ||
| KOG4439|consensus | 901 | 99.73 | ||
| KOG0391|consensus | 1958 | 99.72 | ||
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.7 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.69 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.59 | |
| KOG0388|consensus | 1185 | 99.57 | ||
| KOG0386|consensus | 1157 | 99.56 | ||
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.56 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.55 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.54 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.54 | |
| KOG0384|consensus | 1373 | 99.53 | ||
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.5 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.44 | |
| KOG1123|consensus | 776 | 99.44 | ||
| KOG1000|consensus | 689 | 99.41 | ||
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.4 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.39 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.37 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.27 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.26 | |
| KOG1001|consensus | 674 | 99.25 | ||
| KOG0354|consensus | 746 | 99.22 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.2 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.2 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 99.16 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.11 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.11 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.07 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.06 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.04 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.03 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 98.99 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 98.98 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 98.98 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 98.97 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 98.97 | |
| PTZ00424 | 401 | helicase 45; Provisional | 98.95 | |
| PTZ00110 | 545 | helicase; Provisional | 98.95 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 98.94 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 98.93 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 98.92 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 98.92 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 98.91 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 98.91 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 98.9 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 98.89 | |
| KOG0298|consensus | 1394 | 98.89 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 98.85 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 98.83 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 98.81 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 98.77 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 98.77 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 98.74 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.73 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 98.71 | |
| KOG0383|consensus | 696 | 98.68 | ||
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.56 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 98.55 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 98.55 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 98.53 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 98.49 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.48 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 98.47 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.44 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 98.41 | |
| KOG0331|consensus | 519 | 98.37 | ||
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 98.34 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 98.27 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 98.24 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 98.23 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 98.22 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 98.21 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 98.17 | |
| KOG0350|consensus | 620 | 98.14 | ||
| KOG0952|consensus | 1230 | 98.14 | ||
| KOG1123|consensus | 776 | 98.08 | ||
| KOG0330|consensus | 476 | 98.07 | ||
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 98.06 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 98.04 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.01 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 97.98 | |
| KOG0338|consensus | 691 | 97.97 | ||
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 97.96 | |
| KOG1513|consensus | 1300 | 97.95 | ||
| PRK13766 | 773 | Hef nuclease; Provisional | 97.93 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 97.89 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 97.85 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 97.77 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 97.66 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.64 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 97.63 | |
| KOG0335|consensus | 482 | 97.59 | ||
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 97.57 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 97.51 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 97.5 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 97.5 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 97.48 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 97.48 | |
| KOG0947|consensus | 1248 | 97.46 | ||
| KOG0342|consensus | 543 | 97.45 | ||
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 97.43 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 97.41 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 97.41 | |
| KOG0345|consensus | 567 | 97.38 | ||
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.37 | |
| KOG0353|consensus | 695 | 97.31 | ||
| KOG0348|consensus | 708 | 97.31 | ||
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 97.31 | |
| KOG0343|consensus | 758 | 97.27 | ||
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.26 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 97.25 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 97.24 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.24 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.24 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.23 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.21 | |
| KOG0339|consensus | 731 | 97.21 | ||
| KOG0951|consensus | 1674 | 97.14 | ||
| KOG0328|consensus | 400 | 97.11 | ||
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.1 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 97.07 | |
| KOG1803|consensus | 649 | 97.03 | ||
| PF10382 | 83 | DUF2439: Protein of unknown function (DUF2439); In | 97.02 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.96 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 96.94 | |
| KOG0948|consensus | 1041 | 96.92 | ||
| KOG0347|consensus | 731 | 96.92 | ||
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 96.9 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 96.89 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 96.88 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 96.7 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 96.6 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 96.55 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 96.54 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 96.51 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 96.47 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 96.44 | |
| KOG0346|consensus | 569 | 96.4 | ||
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 96.4 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 96.4 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 96.39 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 96.37 | |
| KOG1802|consensus | 935 | 96.33 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 96.27 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 96.25 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 96.25 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 96.21 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 96.2 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.19 | |
| KOG0340|consensus | 442 | 96.14 | ||
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 96.14 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 96.09 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 95.94 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.92 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 95.88 | |
| KOG0351|consensus | 941 | 95.86 | ||
| PTZ00110 | 545 | helicase; Provisional | 95.84 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.82 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 95.76 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 95.75 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 95.7 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.69 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 95.52 | |
| KOG0334|consensus | 997 | 95.51 | ||
| KOG0336|consensus | 629 | 95.49 | ||
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 95.46 | |
| KOG0352|consensus | 641 | 95.39 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 95.36 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 95.35 | |
| KOG0333|consensus | 673 | 95.3 | ||
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 95.25 | |
| KOG1805|consensus | 1100 | 95.24 | ||
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 95.2 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 95.2 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.16 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 95.09 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 95.08 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 95.05 | |
| KOG0949|consensus | 1330 | 94.96 | ||
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 94.96 | |
| KOG4284|consensus | 980 | 94.92 | ||
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 94.91 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 94.88 | |
| KOG0950|consensus | 1008 | 94.85 | ||
| KOG0341|consensus | 610 | 94.84 | ||
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 94.8 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 94.78 | |
| PTZ00424 | 401 | helicase 45; Provisional | 94.75 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 94.75 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 94.69 | |
| KOG1132|consensus | 945 | 94.59 | ||
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 94.56 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 94.53 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 94.42 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 94.41 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 94.32 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 94.3 | |
| PRK08116 | 268 | hypothetical protein; Validated | 94.28 | |
| KOG0925|consensus | 699 | 94.27 | ||
| COG4889 | 1518 | Predicted helicase [General function prediction on | 94.23 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 94.18 | |
| KOG0922|consensus | 674 | 94.16 | ||
| KOG0329|consensus | 387 | 94.12 | ||
| KOG0926|consensus | 1172 | 94.11 | ||
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.1 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 94.09 | |
| KOG0344|consensus | 593 | 94.08 | ||
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 94.07 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 94.05 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 93.93 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 93.83 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 93.81 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 93.8 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 93.79 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.7 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 93.65 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 93.61 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 93.57 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 93.55 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 93.5 | |
| PRK06526 | 254 | transposase; Provisional | 93.46 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 93.41 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 93.38 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 93.21 | |
| KOG1131|consensus | 755 | 93.19 | ||
| KOG0337|consensus | 529 | 93.17 | ||
| KOG0924|consensus | 1042 | 92.98 | ||
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 92.95 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 92.94 | |
| KOG0326|consensus | 459 | 92.93 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 92.91 | |
| KOG0989|consensus | 346 | 92.89 | ||
| PHA02533 | 534 | 17 large terminase protein; Provisional | 92.85 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 92.83 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 92.81 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 92.79 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 92.78 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 92.75 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 92.68 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 92.63 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 92.59 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 92.48 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 92.45 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 92.44 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 92.4 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 92.38 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 92.37 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 92.35 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 92.23 | |
| KOG0991|consensus | 333 | 92.2 | ||
| KOG0920|consensus | 924 | 92.16 | ||
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 92.15 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 92.08 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 92.0 | |
| KOG0350|consensus | 620 | 91.8 | ||
| PRK08181 | 269 | transposase; Validated | 91.78 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 91.74 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 91.73 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 91.64 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 91.52 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 91.43 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 91.41 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 91.3 | |
| PRK08727 | 233 | hypothetical protein; Validated | 91.22 | |
| KOG0780|consensus | 483 | 91.22 | ||
| KOG0734|consensus | 752 | 91.21 | ||
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 91.15 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 91.15 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 91.13 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 91.09 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 91.09 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 91.08 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 91.02 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 91.01 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 90.94 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 90.94 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 90.88 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 90.85 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 90.82 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 90.73 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 90.59 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 90.57 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 90.55 | |
| PRK12377 | 248 | putative replication protein; Provisional | 90.51 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 90.34 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 90.3 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 90.24 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 90.17 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 90.16 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 90.07 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 90.04 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 90.02 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 89.94 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 89.92 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 89.72 | |
| KOG0354|consensus | 746 | 89.71 | ||
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 89.71 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 89.69 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 89.64 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 89.6 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 89.5 | |
| KOG0332|consensus | 477 | 89.47 | ||
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 89.44 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 89.41 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 89.38 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 89.31 | |
| KOG0951|consensus | 1674 | 89.22 | ||
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 89.15 | |
| KOG0331|consensus | 519 | 89.15 | ||
| PF13173 | 128 | AAA_14: AAA domain | 89.14 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 89.05 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 88.93 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 88.9 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 88.89 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 88.76 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 88.66 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 88.55 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 88.19 | |
| KOG0738|consensus | 491 | 88.19 | ||
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 88.01 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 87.93 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 87.88 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 87.85 | |
| PHA03372 | 668 | DNA packaging terminase subunit 1; Provisional | 87.83 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 87.82 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 87.79 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 87.67 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 87.53 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 87.43 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 87.16 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 87.14 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 87.07 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 86.94 | |
| KOG0327|consensus | 397 | 86.92 | ||
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 86.72 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 86.72 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 86.4 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 86.18 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 86.1 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 86.1 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 86.0 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 85.95 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 85.84 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 85.61 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 85.6 | |
| KOG0342|consensus | 543 | 85.47 | ||
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 85.43 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 85.42 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 85.33 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 85.26 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 85.24 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 85.19 | |
| KOG0733|consensus | 802 | 85.1 | ||
| PRK10867 | 433 | signal recognition particle protein; Provisional | 85.06 | |
| COG1702 | 348 | PhoH Phosphate starvation-inducible protein PhoH, | 85.01 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 84.89 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 84.88 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 84.85 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 84.81 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 84.63 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 84.61 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 84.23 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 84.17 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 84.15 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 84.1 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 83.97 | |
| KOG0923|consensus | 902 | 83.86 | ||
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 83.84 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 83.77 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 83.75 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 83.67 | |
| KOG0740|consensus | 428 | 83.64 | ||
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 83.64 | |
| PF02702 | 211 | KdpD: Osmosensitive K+ channel His kinase sensor d | 83.47 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 83.46 | |
| KOG0729|consensus | 435 | 83.43 | ||
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 83.22 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 82.94 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 82.9 | |
| PF00265 | 176 | TK: Thymidine kinase; InterPro: IPR001267 Thymidin | 82.84 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 82.83 | |
| KOG0339|consensus | 731 | 82.72 | ||
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 82.65 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 82.58 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 82.58 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 82.04 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 81.87 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 81.81 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 81.61 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 81.54 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 81.18 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 80.31 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 80.21 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 80.16 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 80.15 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 80.01 |
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=521.44 Aligned_cols=302 Identities=34% Similarity=0.535 Sum_probs=276.7
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
.+.||..+.+.|+|||++||+||++. +-.+.||||+||||||||+|+|+|++.+...+.. .+|+|||||.+
T Consensus 195 ~~~vPg~I~~~Lf~yQreGV~WL~~L-----~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~----~~paLIVCP~T 265 (923)
T KOG0387|consen 195 GFKVPGFIWSKLFPYQREGVQWLWEL-----YCQRAGGILGDEMGLGKTIQIISFLAALHHSGKL----TKPALIVCPAT 265 (923)
T ss_pred cccccHHHHHHhhHHHHHHHHHHHHH-----HhccCCCeecccccCccchhHHHHHHHHhhcccc----cCceEEEccHH
Confidence 37899999999999999999999985 4567899999999999999999999999887542 36799999999
Q ss_pred hHHHHHHHHHHHhCCCCeeEeecCCcchhh-------------hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcC
Q psy12466 443 LTSNWNDEFKKWLGLTRMCPYHVNQKNKAE-------------DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDE 509 (680)
Q Consensus 443 ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDE 509 (680)
++.||..||.+|+|..++.++|+....... .........|+||||+.++..-+.+....|+++|+||
T Consensus 266 ii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 266 IIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecC
Confidence 999999999999999999999998773211 1111235679999999999988889999999999999
Q ss_pred cccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhh
Q psy12466 510 GHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589 (680)
Q Consensus 510 aH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~ 589 (680)
+|+|||++++.+.++.++++.+|++||||||||++.|||+|++|+.|+.+++...|.+.|..||..|++.+++..+...+
T Consensus 346 GH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~a 425 (923)
T KOG0387|consen 346 GHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTA 425 (923)
T ss_pred cccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhccceeeechhHHhh-cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh---chhhHHHHHHHHHHhccC
Q psy12466 590 ELRSSQLAKRTAGFILRRTSDVQAS-LLNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVTHALRKICNH 665 (680)
Q Consensus 590 ~~~~~~L~~~l~~f~lRrtk~~v~~-~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~---~~~~~l~~l~~LRqicnH 665 (680)
+.+...|+.+++||+|||+|.++.. .||.|.|+|++|.||+.|+++|++++++..... .....|..+..||++|||
T Consensus 426 ykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnH 505 (923)
T KOG0387|consen 426 YKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNH 505 (923)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCC
Confidence 9999999999999999999999988 999999999999999999999999999877654 455678899999999999
Q ss_pred ccccCCCC
Q psy12466 666 PGLVQQPD 673 (680)
Q Consensus 666 P~L~~~~~ 673 (680)
|.|+...+
T Consensus 506 Pdll~~~~ 513 (923)
T KOG0387|consen 506 PDLLDRRD 513 (923)
T ss_pred cccccCcc
Confidence 99999863
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-58 Score=497.90 Aligned_cols=287 Identities=30% Similarity=0.439 Sum_probs=255.9
Q ss_pred Ccccc-cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHH
Q psy12466 367 DGFLS-RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTS 445 (680)
Q Consensus 367 p~~l~-~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~ 445 (680)
|..++ .+|||||.+|++||... +.++-+||||||||||||+|+|+++.++...... .+|+||+||.|++.
T Consensus 160 P~~v~~g~lr~YQveGlnWLi~l-----~engingILaDEMGLGKTlQtIs~l~yl~~~~~~----~GPfLVi~P~StL~ 230 (971)
T KOG0385|consen 160 PSYVKGGELRDYQLEGLNWLISL-----YENGINGILADEMGLGKTLQTISLLGYLKGRKGI----PGPFLVIAPKSTLD 230 (971)
T ss_pred chhhcCCccchhhhccHHHHHHH-----HhcCcccEeehhcccchHHHHHHHHHHHHHhcCC----CCCeEEEeeHhhHH
Confidence 44555 88999999999999974 5678899999999999999999999999885432 35699999999999
Q ss_pred HHHHHHHHHhCCCCeeEeecCCcchhh---hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHH
Q psy12466 446 NWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE 522 (680)
Q Consensus 446 qW~~E~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~ 522 (680)
||.+||++|+|++++++|+|+...+.. +....+.++|+||||+++.++...+.+..|.++||||||++||..|.+++
T Consensus 231 NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~ 310 (971)
T KOG0385|consen 231 NWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSK 310 (971)
T ss_pred HHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHH
Confidence 999999999999999999999876643 44455689999999999999999999999999999999999999999999
Q ss_pred HHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcc
Q psy12466 523 LMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602 (680)
Q Consensus 523 ~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 602 (680)
.++.+.+.+|+++||||+||++.|||+||+|+.|+.|.+.+.|.+||..-... ...+...+||.+++|
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~------------~~~e~v~~Lh~vL~p 378 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCE------------GDQELVSRLHKVLRP 378 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccc------------cCHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999873211 123356889999999
Q ss_pred ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHhccCccccCCCCC
Q psy12466 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPGLVQQPDM 674 (680)
Q Consensus 603 f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------~~~~~l~~l~~LRqicnHP~L~~~~~~ 674 (680)
|++||.|.+|...||+|.|.+++|.||+.|++.|..++....... .....++++|+||||||||+||...+.
T Consensus 379 FlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP 456 (971)
T KOG0385|consen 379 FLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP 456 (971)
T ss_pred HHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC
Confidence 999999999999999999999999999999999999987554444 335678999999999999999999665
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-56 Score=493.95 Aligned_cols=297 Identities=30% Similarity=0.444 Sum_probs=265.2
Q ss_pred cccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 362 ~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
+++.+|..|..+||.||+.|++||.. .+.++.+||||||||||||+|.|+|++++.-... .++|.|||||+
T Consensus 604 VktpvPsLLrGqLReYQkiGLdWLat-----LYeknlNGILADEmGLGKTIQtISllAhLACeeg----nWGPHLIVVpT 674 (1958)
T KOG0391|consen 604 VKTPVPSLLRGQLREYQKIGLDWLAT-----LYEKNLNGILADEMGLGKTIQTISLLAHLACEEG----NWGPHLIVVPT 674 (1958)
T ss_pred eccCchHHHHHHHHHHHHhhHHHHHH-----HHHhcccceehhhhcccchhHHHHHHHHHHhccc----CCCCceEEeec
Confidence 46778889999999999999999986 3567889999999999999999999999886543 24679999999
Q ss_pred chHHHHHHHHHHHhCCCCeeEeecCCcchhh---hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCccc
Q psy12466 442 SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKS 518 (680)
Q Consensus 442 sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s 518 (680)
+++.||.-||++|||.+++..|.|+.+.+.. .|.....+.|.||+|..+..+...+...+|.++|+||||+|||..+
T Consensus 675 sviLnWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfks 754 (1958)
T KOG0391|consen 675 SVILNWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKS 754 (1958)
T ss_pred hhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhH
Confidence 9999999999999999999999998876643 3445567889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHH
Q psy12466 519 KLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAK 598 (680)
Q Consensus 519 ~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~ 598 (680)
+.++++..+++.+|++|||||++|++.|||+|+.||+|..|.+...|+.||.+|+...-. ..+........+||+
T Consensus 755 qrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiE-----gsqeyn~klV~RLHk 829 (1958)
T KOG0391|consen 755 QRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIE-----GSQEYNHKLVIRLHK 829 (1958)
T ss_pred HHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcc-----cchhhchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998854322 223444666789999
Q ss_pred HhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHH--h---chhhHHHHHHHHHHhccCccccCCC
Q psy12466 599 RTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR--A---SRDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 599 ~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~--~---~~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
.++||+|||+|.+|.++||.|.|++|.|.||..|+.+|++++.+.... + +-.+++++||+||||||||.||.+.
T Consensus 830 VlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpR 908 (1958)
T KOG0391|consen 830 VLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPR 908 (1958)
T ss_pred HhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCC
Confidence 999999999999999999999999999999999999999998755332 2 5567899999999999999999864
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=488.62 Aligned_cols=311 Identities=31% Similarity=0.469 Sum_probs=277.6
Q ss_pred CCccccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC--CCCCCccceEE
Q psy12466 359 KPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG--PYGMPVIRKVL 436 (680)
Q Consensus 359 ~~~~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~--~~~~~~~~~~L 436 (680)
..+++..+|-.++..||.||.+||+|+.- ...-+-.||||||||||||+|+|++++.-.... ....-...|.|
T Consensus 961 ski~~y~Ip~pI~a~LRkYQqEGVnWLaF-----Lnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSL 1035 (1549)
T KOG0392|consen 961 SKIPEYKIPVPISAKLRKYQQEGVNWLAF-----LNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSL 1035 (1549)
T ss_pred ccCCccccccchhHHHHHHHHhccHHHHH-----HHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeE
Confidence 34667788888999999999999999842 344567899999999999999999887644333 11111235689
Q ss_pred EEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc
Q psy12466 437 IVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 437 IV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~ 516 (680)
||||++|.++|+.|+.+|+|.+++..|.|....+.........++|+|++|+.++++++.+.+..|.++|+||+|.+||.
T Consensus 1036 IVCPsTLtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ 1115 (1549)
T KOG0392|consen 1036 IVCPSTLTGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNS 1115 (1549)
T ss_pred EECCchhhhHHHHHHHHhcchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecch
Confidence 99999999999999999999999999998887777666666678999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHH
Q psy12466 517 KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQL 596 (680)
Q Consensus 517 ~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L 596 (680)
.++.+++++++.+.+|++|||||+||++.||||+++||+||++|+.+.|.++|.+||...+....++.+++.+-.+.+.|
T Consensus 1116 ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaL 1195 (1549)
T KOG0392|consen 1116 KTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEAL 1195 (1549)
T ss_pred HHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-----------c--hhhHHHHHHHHHHhc
Q psy12466 597 AKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA-----------S--RDSHLSVTHALRKIC 663 (680)
Q Consensus 597 ~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-----------~--~~~~l~~l~~LRqic 663 (680)
|+.+-||++||+|++|..+||+|.-+..+|+|||.|+++|+.+........ . .+.+++.|..|||+|
T Consensus 1196 HKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLc 1275 (1549)
T KOG0392|consen 1196 HKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLC 1275 (1549)
T ss_pred HHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999987722110 2 456899999999999
Q ss_pred cCccccCCCCC
Q psy12466 664 NHPGLVQQPDM 674 (680)
Q Consensus 664 nHP~L~~~~~~ 674 (680)
|||.|+..+-.
T Consensus 1276 nHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1276 NHPALVLTPVH 1286 (1549)
T ss_pred CCcceeeCCCc
Confidence 99999988643
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=457.00 Aligned_cols=293 Identities=29% Similarity=0.433 Sum_probs=261.1
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
.++.|..|.++|+.||..|++||... +..|-+||||||||||||+|+|++++++.+... ..+|+|||+|.+
T Consensus 557 tV~qPkil~ctLKEYQlkGLnWLvnl-----YdqGiNGILADeMGLGKTVQsisvlAhLaE~~n----IwGPFLVVtpaS 627 (1185)
T KOG0388|consen 557 TVPQPKILKCTLKEYQLKGLNWLVNL-----YDQGINGILADEMGLGKTVQSISVLAHLAETHN----IWGPFLVVTPAS 627 (1185)
T ss_pred eccCchhhhhhhHHHhhccHHHHHHH-----HHccccceehhhhccchhHHHHHHHHHHHHhcc----CCCceEEeehHH
Confidence 36678889999999999999999875 567889999999999999999999999998765 356799999999
Q ss_pred hHHHHHHHHHHHhCCCCeeEeecCCcchhh---------hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 443 LTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---------DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 443 ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
+++||.+||.+|+|.++++.|.|+...+.. -+.....+.|+||+|+++..+...+...+|.++|+|||+.|
T Consensus 628 tL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAI 707 (1185)
T KOG0388|consen 628 TLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAI 707 (1185)
T ss_pred HHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHh
Confidence 999999999999999999999998776532 12234568899999999999999999999999999999999
Q ss_pred cCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHH
Q psy12466 514 KNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593 (680)
Q Consensus 514 kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~ 593 (680)
|...|..++.+..++++.|++|||||+||++.|||+||.|++|..|++..+|.+||...|+.....+ ..+.....
T Consensus 708 KSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~-----~tlneqqL 782 (1185)
T KOG0388|consen 708 KSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMN-----TTLNEQQL 782 (1185)
T ss_pred hhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhc-----CCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999776544332 34556677
Q ss_pred HHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhccCccccCCCC
Q psy12466 594 SQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPD 673 (680)
Q Consensus 594 ~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~~~~~~l~~l~~LRqicnHP~L~~~~~ 673 (680)
.+||.+|+||||||.|++|..+|..|++..|+|++|..|+.+|+.+..... ......++|+||++||||.||....
T Consensus 783 ~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----~~E~~~~vmQlrKVCNHPdLFer~e 858 (1185)
T KOG0388|consen 783 QRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----SMEMENLVMQLRKVCNHPDLFERLE 858 (1185)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhcCChHHHhhcC
Confidence 899999999999999999999999999999999999999999998877664 2334458999999999999997653
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=450.77 Aligned_cols=287 Identities=33% Similarity=0.443 Sum_probs=246.6
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
.+|+|||+.||+||.= .+..+-.||||||||||||+|+|||++++...+. .+|.|||||+|++.||.+||
T Consensus 398 i~LkdYQlvGvNWL~L-----lyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-----~gpHLVVvPsSTleNWlrEf 467 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLL-----LYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-----PGPHLVVVPSSTLENWLREF 467 (941)
T ss_pred CcccchhhhhHHHHHH-----HHHccccceehhhccCcchhHHHHHHHHHHHcCC-----CCCcEEEecchhHHHHHHHH
Confidence 4699999999999963 4566788999999999999999999999999875 24689999999999999999
Q ss_pred HHHhCCCCeeEeecCCcchhhhh----hhcCCCCEEEEeHHHHH---HHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDY----VYSRVSPVLIISYEMLI---RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~vvI~ty~~l~---~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
.+|||.++|..|+|+...+..-. .....++|++|||+.+. .+...+...+|+++|+||+|.+||..|.+++.+
T Consensus 468 ~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~L 547 (941)
T KOG0389|consen 468 AKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHL 547 (941)
T ss_pred HHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHh
Confidence 99999999999999987765321 12247899999999985 456678899999999999999999999999999
Q ss_pred HhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCH-HHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccc
Q psy12466 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL-REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGF 603 (680)
Q Consensus 525 ~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~-~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f 603 (680)
+.+++++|++|||||+||++.||+|||.|+.|..|.+. +++..-|.. ....+.......+..++..+...++.||
T Consensus 548 M~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~----k~~~d~d~e~~~l~qerIsrAK~im~PF 623 (941)
T KOG0389|consen 548 MSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKA----KKTSDGDIENALLSQERISRAKTIMKPF 623 (941)
T ss_pred ccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhc----cCCccchhhHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999864 455555543 2223455566667778899999999999
Q ss_pred eeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh---ch---hhHHHHHHHHHHhccCccccCCC
Q psy12466 604 ILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SR---DSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 604 ~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~---~~---~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
+|||.|++|..+||+|..++.+|+|+..|+++|+.+++.....+ +. ...-+.||+|||++|||-||+..
T Consensus 624 ILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~ 698 (941)
T KOG0389|consen 624 ILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSI 698 (941)
T ss_pred HHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHh
Confidence 99999999999999999999999999999999999999885444 11 11245899999999999999864
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=468.56 Aligned_cols=278 Identities=32% Similarity=0.495 Sum_probs=250.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
.+||+||.+|++||+.+++ ++.+||||||||||||+|+|+|+.++...+.. .+|+|||+|.|++.+|++||
T Consensus 369 ~~LRdyQLeGlNWl~~~W~-----~~~n~ILADEmgLgktvqti~fl~~l~~~~~~----~gpflvvvplst~~~W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWY-----KRNNCILADEMGLGKTVQTITFLSYLFHSLQI----HGPFLVVVPLSTITAWEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHH-----hcccceehhhcCCCcchHHHHHHHHHHHhhhc----cCCeEEEeehhhhHHHHHHH
Confidence 6899999999999998764 56899999999999999999999999987753 45699999999999999999
Q ss_pred HHHhCCCCeeEeecCCcchhhh--h--hhcC-----CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAED--Y--VYSR-----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~--~--~~~~-----~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~ 522 (680)
..|+ ++++++|+|....+... + .... .++++||||+++.++...|...+|.++++||||++||..+.++.
T Consensus 440 ~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~ 518 (1373)
T KOG0384|consen 440 ETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYE 518 (1373)
T ss_pred HHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHH
Confidence 9999 99999999987766422 1 1112 58899999999999999999999999999999999999999999
Q ss_pred HHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcc
Q psy12466 523 LMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602 (680)
Q Consensus 523 ~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 602 (680)
.+..++.++|+++||||+||++.|||+|++|++|+.|.+..+|...|.. ........|+.+|+|
T Consensus 519 ~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~----------------~~e~~~~~L~~~L~P 582 (1373)
T KOG0384|consen 519 SLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE----------------ETEEQVRKLQQILKP 582 (1373)
T ss_pred HHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc----------------hhHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999888843 124456789999999
Q ss_pred ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHhccCccccCCCCCc
Q psy12466 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPGLVQQPDMM 675 (680)
Q Consensus 603 f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------~~~~~l~~l~~LRqicnHP~L~~~~~~~ 675 (680)
||+||.|++|.+.||+|.|.++.|+||+.|++.|+.|++.....+ +....|+++|.||||||||+||++++..
T Consensus 583 ~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~ 661 (1373)
T KOG0384|consen 583 FLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEK 661 (1373)
T ss_pred HHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHH
Confidence 999999999999999999999999999999999999999887766 3357899999999999999999998654
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=473.18 Aligned_cols=287 Identities=30% Similarity=0.416 Sum_probs=249.5
Q ss_pred cCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHH
Q psy12466 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTS 445 (680)
Q Consensus 366 ~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~ 445 (680)
.|..+..+|||||++|++||+.. ...+.|||||||||||||+|+|+++..+..... ..+|+|||||.+++.
T Consensus 162 qP~~i~~~Lr~YQleGlnWLi~l-----~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~----~~gp~LIVvP~SlL~ 232 (1033)
T PLN03142 162 QPSCIKGKMRDYQLAGLNWLIRL-----YENGINGILADEMGLGKTLQTISLLGYLHEYRG----ITGPHMVVAPKSTLG 232 (1033)
T ss_pred CChHhccchHHHHHHHHHHHHHH-----HhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcC----CCCCEEEEeChHHHH
Confidence 46667789999999999999874 345789999999999999999999998876432 245799999999999
Q ss_pred HHHHHHHHHhCCCCeeEeecCCcchhh---hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHH
Q psy12466 446 NWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE 522 (680)
Q Consensus 446 qW~~E~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~ 522 (680)
||.+||.+|+|..+++.+++....+.. .......++|+||||+++.+....+....|++|||||||++||..++.++
T Consensus 233 nW~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklsk 312 (1033)
T PLN03142 233 NWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSK 312 (1033)
T ss_pred HHHHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHH
Confidence 999999999999999999987655432 22234568999999999999999999999999999999999999999999
Q ss_pred HHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcc
Q psy12466 523 LMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602 (680)
Q Consensus 523 ~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 602 (680)
+++.+++.+||+|||||++|++.|||++++||.|+.|++...|..+|..... .........|+.+++|
T Consensus 313 alr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~------------~~~~e~i~~L~~~L~p 380 (1033)
T PLN03142 313 TMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE------------NDQQEVVQQLHKVLRP 380 (1033)
T ss_pred HHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc------------cchHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999976210 1123456789999999
Q ss_pred ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh----chhhHHHHHHHHHHhccCccccCCCC
Q psy12466 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA----SRDSHLSVTHALRKICNHPGLVQQPD 673 (680)
Q Consensus 603 f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~----~~~~~l~~l~~LRqicnHP~L~~~~~ 673 (680)
|++||+|.++...||++.+.+++|.||+.|+++|+.+++.....+ .....++++++||+|||||+|+....
T Consensus 381 f~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~e 455 (1033)
T PLN03142 381 FLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAE 455 (1033)
T ss_pred HHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccc
Confidence 999999999999999999999999999999999999987654443 33457889999999999999987654
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-50 Score=449.11 Aligned_cols=319 Identities=43% Similarity=0.733 Sum_probs=276.5
Q ss_pred CCCCCCCccccccCcccccccCcccHHHHHHHHHhhhhhccC-CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCcc
Q psy12466 354 HNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASL-DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432 (680)
Q Consensus 354 ~~~~~~~~~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~-~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~ 432 (680)
.+....+...+.++|.+...|||||++|+.||++++.+.... +.+|||+||+||+|||+|+|+|++.+.+++|+..+.+
T Consensus 219 ~~k~~~~~v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~ 298 (776)
T KOG0390|consen 219 ASKDKFSGVHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLI 298 (776)
T ss_pred CCCCcCccceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccc
Confidence 333333446788899999999999999999999998765432 7899999999999999999999999999999988888
Q ss_pred ceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchh-----hhh----hhcCCCCEEEEeHHHHHHHHHhhhccCce
Q psy12466 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA-----EDY----VYSRVSPVLIISYEMLIRAYQTIVDTEFD 503 (680)
Q Consensus 433 ~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~-----~~~----~~~~~~~vvI~ty~~l~~~~~~l~~~~~~ 503 (680)
++.|||||.+|+.+|.+||.+|...-++..+...+.... ..+ ..+-...|.|.+|+++++..+.+....++
T Consensus 299 ~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~g 378 (776)
T KOG0390|consen 299 NKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPG 378 (776)
T ss_pred cccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999998534444333333321 011 11224569999999999999999999999
Q ss_pred EEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChH
Q psy12466 504 LLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTE 583 (680)
Q Consensus 504 ~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~ 583 (680)
++|+||+|++||..+.+++++.++++++|++|||||+||++.|+|++++|++|+++++...|.+.|..|+..++..+++.
T Consensus 379 lLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~ 458 (776)
T KOG0390|consen 379 LLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASE 458 (776)
T ss_pred eEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHhhhhHHHHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhc
Q psy12466 584 AQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHALRKIC 663 (680)
Q Consensus 584 ~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~~~~~~l~~l~~LRqic 663 (680)
..... .++.++|+.++..|++||+.+.+.+.||++.+++|+|.+|+.|+.+|+.+........-.+..|..++.|+++|
T Consensus 459 e~~~~-~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 459 EDRER-EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhh-HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 77666 67799999999999999999999999999999999999999999999999988622223344888999999999
Q ss_pred cCccccCCCC
Q psy12466 664 NHPGLVQQPD 673 (680)
Q Consensus 664 nHP~L~~~~~ 673 (680)
|||.|+....
T Consensus 538 nhP~L~~~~~ 547 (776)
T KOG0390|consen 538 NHPSLLLLCE 547 (776)
T ss_pred cCHHhhcccc
Confidence 9999997333
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=433.80 Aligned_cols=291 Identities=31% Similarity=0.474 Sum_probs=253.8
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWND 449 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~ 449 (680)
...+|++||+.|++||.. .+.++.+||||||||||||+|+|+++.++.+.... .+|.|||||.+++.+|..
T Consensus 391 ~GG~Lk~YQl~GLqWmVS-----LyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~----~GP~LvivPlstL~NW~~ 461 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVS-----LYNNNLNGILADEMGLGKTIQTISLITYLMEHKQM----QGPFLIIVPLSTLVNWSS 461 (1157)
T ss_pred cCCCCchhhhhhhHHHhh-----ccCCCcccccchhcccchHHHHHHHHHHHHHHccc----CCCeEEeccccccCCchh
Confidence 368899999999999986 46788999999999999999999999999886543 356999999999999999
Q ss_pred HHHHHhCCCCeeEeecCCcchh--hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHH-h
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKA--EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT-G 526 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~-~ 526 (680)
||.+|.|.+..+.|.|....+. ......+.++|++|||+.+.++...|....|.++||||+|++||..+++...+. .
T Consensus 462 Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 462 EFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTH 541 (1157)
T ss_pred hccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhcc
Confidence 9999999999999988776553 233344789999999999999999999999999999999999999999999998 6
Q ss_pred cccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCC-CCChHHHHHhhhhHHHHHHHHhcccee
Q psy12466 527 LNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRS-PNSTEAQKSLGELRSSQLAKRTAGFIL 605 (680)
Q Consensus 527 l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~-~~~~~~~~~~~~~~~~~L~~~l~~f~l 605 (680)
..+.+|++|||||+||++.|||+||+|+-|..|.+...|..||..|+...+. ...++.+. -....+||+.|+||++
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEt---lLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEET---LLIIRRLHKVLRPFLL 618 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHH---HHHHHHHHHhhhHHHH
Confidence 7999999999999999999999999999999999999999999999987773 23333332 2345789999999999
Q ss_pred eechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHH-------hchhhHHHHHHHHHHhccCccccCCC
Q psy12466 606 RRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR-------ASRDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 606 Rrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~-------~~~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
||.|++|..+||+|++.++.|.||..|+.+|..+......- ......++.+|.||||||||++|...
T Consensus 619 RRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 619 RRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred HhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 99999999999999999999999999999999987533221 13345788999999999999999544
|
|
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=414.21 Aligned_cols=305 Identities=32% Similarity=0.509 Sum_probs=262.1
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhh----ccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDL----ASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~----~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV 438 (680)
.+.||..+..+|+|||..||+|||++.|.. ....|-||||||.||||||+|+|+|++.+..... ..++++|||
T Consensus 658 ~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~k---lg~ktaLvV 734 (1567)
T KOG1015|consen 658 LVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDK---LGFKTALVV 734 (1567)
T ss_pred hhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhc---cCCceEEEE
Confidence 468999999999999999999999997743 3457889999999999999999999998876543 246889999
Q ss_pred eccchHHHHHHHHHHHhCCC----CeeEeecCCcch--hhh---hhhcCCCCEEEEeHHHHHHH---------------H
Q psy12466 439 TPSSLTSNWNDEFKKWLGLT----RMCPYHVNQKNK--AED---YVYSRVSPVLIISYEMLIRA---------------Y 494 (680)
Q Consensus 439 ~P~sll~qW~~E~~~~~~~~----~v~~~~~~~~~~--~~~---~~~~~~~~vvI~ty~~l~~~---------------~ 494 (680)
||.+++.||..||.+|.+++ .+-++....-.+ .+. ..+.....|.|+.|++++.. .
T Consensus 735 ~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~ 814 (1567)
T KOG1015|consen 735 CPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFN 814 (1567)
T ss_pred cchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHH
Confidence 99999999999999999853 233333322222 111 12345568999999999742 2
Q ss_pred HhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhh
Q psy12466 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPIL 574 (680)
Q Consensus 495 ~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~ 574 (680)
..+....+|+|||||||.+||..+.+++++.++++.+||+|||||+||++.|+|.|++|+.|+++|+..+|.++|.+||.
T Consensus 815 k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~ 894 (1567)
T KOG1015|consen 815 KALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQ 894 (1567)
T ss_pred HhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccc
Confidence 33556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-------
Q psy12466 575 ESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------- 647 (680)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------- 647 (680)
.|+..+++.........+.+.|+.+|..|+.|+.-..+...||||++++|.|.||+.|..+|..+++......
T Consensus 895 nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg~~ 974 (1567)
T KOG1015|consen 895 NGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEGGR 974 (1567)
T ss_pred cCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998332111
Q ss_pred -chhhHHHHHHHHHHhccCccccC
Q psy12466 648 -SRDSHLSVTHALRKICNHPGLVQ 670 (680)
Q Consensus 648 -~~~~~l~~l~~LRqicnHP~L~~ 670 (680)
-....|..+..|++|.+||+.+.
T Consensus 975 g~~arlf~dfqmlsrIwtHP~~lq 998 (1567)
T KOG1015|consen 975 GAGARLFQDFQMLSRIWTHPWCLQ 998 (1567)
T ss_pred chhhhHHHHHHHHHHHhcCCCcee
Confidence 22357889999999999998654
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=384.38 Aligned_cols=279 Identities=35% Similarity=0.507 Sum_probs=227.8
Q ss_pred ccHHHHHHHHHhh----hhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERV----CDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 377 yQ~~gv~~l~~~~----~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
||++||+||+.+. ........+|||||||||+|||+++++++..+....+.. ..+++|||||.+++.+|..|+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~--~~~~~LIv~P~~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQR--GEKKTLIVVPSSLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTS--S-S-EEEEE-TTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccc--cccceeEeeccchhhhhhhhhc
Confidence 8999999999873 001125678999999999999999999999887765432 1246999999999999999999
Q ss_pred HHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-----HHHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 453 KWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-----RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 453 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-----~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
+|++ ..++.++.+..............++++|+||+.+. .....+...+|++||+||+|+++|..+..++++.
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~ 158 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALR 158 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHH
T ss_pred cccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccccc
Confidence 9994 56777777666233333334457899999999999 6667788888999999999999999999999999
Q ss_pred hcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcccee
Q psy12466 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFIL 605 (680)
Q Consensus 526 ~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~l 605 (680)
.+.+.++|+|||||++|++.|+|++++||.|..+.+...|.+.|..+ ...........|+.++++|++
T Consensus 159 ~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~~~L~~~l~~~~~ 226 (299)
T PF00176_consen 159 KLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENIERLRELLSEFMI 226 (299)
T ss_dssp CCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHHHHHHHHHCCCEE
T ss_pred ccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------ccccccccccccccccchhhh
Confidence 99999999999999999999999999999999999999999998765 233456677899999999999
Q ss_pred eechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh---------chhhHHHHHHHHHHhccCcccc
Q psy12466 606 RRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA---------SRDSHLSVTHALRKICNHPGLV 669 (680)
Q Consensus 606 Rrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~---------~~~~~l~~l~~LRqicnHP~L~ 669 (680)
||+++++...||+..+.++.|+||+.|+++|+.+........ ....++..+++|||+||||+|+
T Consensus 227 r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 227 RRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp CHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 999999988899999999999999999999999888776543 3456789999999999999986
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=385.35 Aligned_cols=291 Identities=27% Similarity=0.353 Sum_probs=237.0
Q ss_pred ccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC---CCCCccceEEEEecc
Q psy12466 365 TVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP---YGMPVIRKVLIVTPS 441 (680)
Q Consensus 365 ~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~---~~~~~~~~~LIV~P~ 441 (680)
.-|..+...|.|||+.|++||..+ ....+.|||||||||+|||+++|+++...+.... ...+...++|||||.
T Consensus 317 e~P~g~~v~LmpHQkaal~Wl~wR----E~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa 392 (901)
T KOG4439|consen 317 ETPDGLKVELMPHQKAALRWLLWR----ESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA 392 (901)
T ss_pred CCCCcceeecchhhhhhhhhhccc----ccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH
Confidence 345568889999999999999987 3557889999999999999999999987654321 112223469999999
Q ss_pred chHHHHHHHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH----------HHhhhccCceEEEEcC
Q psy12466 442 SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA----------YQTIVDTEFDLLICDE 509 (680)
Q Consensus 442 sll~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~----------~~~l~~~~~~~vIlDE 509 (680)
++++||..|+.+-... ++|++|||..+ +.........||||||||..+... ...+....|.+||+||
T Consensus 393 Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDE 471 (901)
T KOG4439|consen 393 SLIHQWEAEVARRLEQNALSVYLYHGPNK-REISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDE 471 (901)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEecCCcc-ccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhh
Confidence 9999999999988754 67888888775 333334456799999999998761 1236677899999999
Q ss_pred cccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhh
Q psy12466 510 GHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589 (680)
Q Consensus 510 aH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~ 589 (680)
||.+||..++.+.+++.|.+..||+|||||++|+.-|+|+|+.||+-.+|++...|+++...+-
T Consensus 472 AH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s---------------- 535 (901)
T KOG4439|consen 472 AHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMS---------------- 535 (901)
T ss_pred hhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcc----------------
Confidence 9999999999999999999999999999999999999999999999999999999998887532
Q ss_pred hhHHHHHHHHhccceeeechhHHhh-----cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-----------------
Q psy12466 590 ELRSSQLAKRTAGFILRRTSDVQAS-----LLNSKRETLLVCRATPLQQSLYLRCVEYWDARA----------------- 647 (680)
Q Consensus 590 ~~~~~~L~~~l~~f~lRrtk~~v~~-----~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~----------------- 647 (680)
.....+|.-+.++.+|||||+++.. .||.+.-.+..++|+..+...|+.+.+....-.
T Consensus 536 ~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~ 615 (901)
T KOG4439|consen 536 KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQ 615 (901)
T ss_pred ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcc
Confidence 1123456667789999999998876 699999999999999999999988766432211
Q ss_pred ------------------------------chhhHHHHHHHHHHhccCccccCCCCCcc
Q psy12466 648 ------------------------------SRDSHLSVTHALRKICNHPGLVQQPDMME 676 (680)
Q Consensus 648 ------------------------------~~~~~l~~l~~LRqicnHP~L~~~~~~~~ 676 (680)
..+.+|..|.+|||+||||.+.......+
T Consensus 616 s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~ 674 (901)
T KOG4439|consen 616 SRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPE 674 (901)
T ss_pred ccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHH
Confidence 01235899999999999998887765543
|
|
| >KOG1016|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=357.69 Aligned_cols=306 Identities=32% Similarity=0.509 Sum_probs=258.9
Q ss_pred cccccCcccccccCcccHHHHHHHHHhhh----hhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEE
Q psy12466 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVC----DLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLI 437 (680)
Q Consensus 362 ~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~----~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LI 437 (680)
+++-+-|.+...|+|||.-||+||+++.. ....+.+-|||||+.||||||+|+|+|+..+.+..+ ++.+|+
T Consensus 243 e~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~-----AKtVL~ 317 (1387)
T KOG1016|consen 243 EDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTK-----AKTVLV 317 (1387)
T ss_pred cceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCc-----cceEEE
Confidence 34556678899999999999999998743 233456889999999999999999999999988775 678999
Q ss_pred EeccchHHHHHHHHHHHhCC-----------CCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHH--------
Q psy12466 438 VTPSSLTSNWNDEFKKWLGL-----------TRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAY-------- 494 (680)
Q Consensus 438 V~P~sll~qW~~E~~~~~~~-----------~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~-------- 494 (680)
|+|-.++.||..||..|.|. +.|+++....+.-.. -..+.....|+++.|++++-..
T Consensus 318 ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~g 397 (1387)
T KOG1016|consen 318 IVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKG 397 (1387)
T ss_pred EEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccC
Confidence 99999999999999999975 123333332222111 1223456789999999997322
Q ss_pred ------------------------------HhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCH
Q psy12466 495 ------------------------------QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 495 ------------------------------~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~ 544 (680)
..|..-.+|+|||||+|+|||.....+.++..+++++|++|||-|+||++
T Consensus 398 rpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNL 477 (1387)
T KOG1016|consen 398 RPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNL 477 (1387)
T ss_pred CccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccch
Confidence 12344579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHHhhcCCCcEEEEE
Q psy12466 545 QEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624 (680)
Q Consensus 545 ~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v 624 (680)
.|.|.|++|++|+++|++.+|.+.|+.||..|...+++.....+...+.+.|+.++..|+.||+-..+..-||.+.|.++
T Consensus 478 lEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyVi 557 (1387)
T KOG1016|consen 478 LEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVI 557 (1387)
T ss_pred HHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHh--ch---hhHHHHHHHHHHhccCccccCCC
Q psy12466 625 VCRATPLQQSLYLRCVEYWDARA--SR---DSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 625 ~v~ms~~Q~~lY~~l~~~~~~~~--~~---~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
-|.||..||++|+.++....... +. -..|.++...-||.|||++++..
T Consensus 558 Lvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~ 610 (1387)
T KOG1016|consen 558 LVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRL 610 (1387)
T ss_pred EEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHH
Confidence 99999999999999885554432 11 14577788889999999987643
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=343.20 Aligned_cols=288 Identities=25% Similarity=0.339 Sum_probs=225.6
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
....|..+.-.|.|||++|+.|+..+ ..+...|||||||||+|||+|+|+++..-.. ..|+|||||.-
T Consensus 174 ~aeqP~dlii~LL~fQkE~l~Wl~~Q----E~Ss~~GGiLADEMGMGKTIQtIaLllae~~--------ra~tLVvaP~V 241 (791)
T KOG1002|consen 174 RAEQPDDLIIPLLPFQKEGLAWLTSQ----EESSVAGGILADEMGMGKTIQTIALLLAEVD--------RAPTLVVAPTV 241 (791)
T ss_pred cccCcccceecchhhhHHHHHHHHHh----hhhhhccceehhhhccchHHHHHHHHHhccc--------cCCeeEEccHH
Confidence 34567778888999999999999875 3456789999999999999999999876222 23599999999
Q ss_pred hHHHHHHHHHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-----------------hhccCceE
Q psy12466 443 LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-----------------IVDTEFDL 504 (680)
Q Consensus 443 ll~qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-----------------l~~~~~~~ 504 (680)
.+.||.+||.+++. ..++.+|||..+.. +......+++|+|||..+...+.. |.+..|..
T Consensus 242 AlmQW~nEI~~~T~gslkv~~YhG~~R~~--nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~R 319 (791)
T KOG1002|consen 242 ALMQWKNEIERHTSGSLKVYIYHGAKRDK--NIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYR 319 (791)
T ss_pred HHHHHHHHHHHhccCceEEEEEecccccC--CHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeee
Confidence 99999999999984 56788888876544 333445799999999998765543 45678999
Q ss_pred EEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHH---------------------
Q psy12466 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLR--------------------- 563 (680)
Q Consensus 505 vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~--------------------- 563 (680)
||+||||.||+..+.+.+++..|.+.+||+|||||+||++.|||++++||+.++|.-+-
T Consensus 320 iIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~ 399 (791)
T KOG1002|consen 320 IILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDH 399 (791)
T ss_pred eehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCc
Confidence 99999999999999999999999999999999999999999999999999888764210
Q ss_pred ----------HHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHHhh--cCCCcEEEEEEecCCHH
Q psy12466 564 ----------EFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS--LLNSKRETLLVCRATPL 631 (680)
Q Consensus 564 ----------~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~--~LP~k~e~~v~v~ms~~ 631 (680)
-|......||...+..+ .+.+.....+.+++..|+||||=+-.. .|||....+..=-++.+
T Consensus 400 c~h~~m~h~~~~n~~mlk~IqkfG~eG-------pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~e 472 (791)
T KOG1002|consen 400 CSHNIMQHTCFFNHFMLKPIQKFGVEG-------PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEE 472 (791)
T ss_pred ccchhhhhhhhhcccccccchhhcccC-------chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhH
Confidence 01111112333322222 233444567888899999999843222 38999988888889999
Q ss_pred HHHHHHHHHHHHHHHh-----------chhhHHHHHHHHHHhccCccccCC
Q psy12466 632 QQSLYLRCVEYWDARA-----------SRDSHLSVTHALRKICNHPGLVQQ 671 (680)
Q Consensus 632 Q~~lY~~l~~~~~~~~-----------~~~~~l~~l~~LRqicnHP~L~~~ 671 (680)
++++|+.+-....... +.+.++..+++|||++.||+|+.-
T Consensus 473 E~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~ 523 (791)
T KOG1002|consen 473 EKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLY 523 (791)
T ss_pred HHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeee
Confidence 9999998765443322 567789999999999999999865
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=377.67 Aligned_cols=294 Identities=37% Similarity=0.518 Sum_probs=248.7
Q ss_pred cccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 368 GFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 368 ~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
..+...|++||.+|++||... ......||||||+||+|||+|+|+++.......... .++.|||||.+++.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~----l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~---~~~~liv~p~s~~~nw 405 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSEL----LRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVY---LGPALIVVPASLLSNW 405 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHH----HHhccCCCcccccccchhHHHHHHHHHhhhhcccCC---CCCeEEEecHHHHHHH
Confidence 456788999999999999742 245678999999999999999999998855554321 4579999999999999
Q ss_pred HHHHHHHhCCCC-eeEeecCCcc----hhh--hhhhc---CCCCEEEEeHHHHHH---HHHhhhccCceEEEEcCccccc
Q psy12466 448 NDEFKKWLGLTR-MCPYHVNQKN----KAE--DYVYS---RVSPVLIISYEMLIR---AYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 448 ~~E~~~~~~~~~-v~~~~~~~~~----~~~--~~~~~---~~~~vvI~ty~~l~~---~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.+|+.+|.|..+ +..++|.... ... ..... ..++++++||+.+.+ +...+....|+++|+||||++|
T Consensus 406 ~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 406 KREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHh
Confidence 999999999999 8889887752 111 11111 128999999999999 8899999999999999999999
Q ss_pred CcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHh-hhCCCCCC-CHHHHHHHhhhhhhccCCCCChHHHHHhhhhH
Q psy12466 515 NGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLND-FANPGVLG-SLREFRKNFEEPILESRSPNSTEAQKSLGELR 592 (680)
Q Consensus 515 n~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~-fl~p~~l~-~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~ 592 (680)
|..+..+++++.+++.++++|||||++|++.|||++++ |++|+.++ +...|..+|..|+........ .......
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~ 561 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP----LEARELG 561 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc----hhhHHHH
Confidence 99999999999999999999999999999999999999 99999999 558999999999877665433 1222334
Q ss_pred HHHHHHHhccceeeechhH--HhhcCCCcEEEEEEecCCHHHHHHHHHHHH---HHHHHh------c---------hhhH
Q psy12466 593 SSQLAKRTAGFILRRTSDV--QASLLNSKRETLLVCRATPLQQSLYLRCVE---YWDARA------S---------RDSH 652 (680)
Q Consensus 593 ~~~L~~~l~~f~lRrtk~~--v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~---~~~~~~------~---------~~~~ 652 (680)
...|+.+++||++||++.+ +..+||++.+.++.|+|++.|+++|+.... ...... . ....
T Consensus 562 ~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (866)
T COG0553 562 IELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNI 641 (866)
T ss_pred HHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHH
Confidence 4558999999999999998 888999999999999999999999999988 333222 1 4568
Q ss_pred HHHHHHHHHhccCccccCCC
Q psy12466 653 LSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 653 l~~l~~LRqicnHP~L~~~~ 672 (680)
++.+++||++||||.++...
T Consensus 642 l~~~~~lr~~~~~p~l~~~~ 661 (866)
T COG0553 642 LALLTRLRQICNHPALVDEG 661 (866)
T ss_pred HHHHHHHHHhccCccccccc
Confidence 89999999999999999886
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=298.01 Aligned_cols=253 Identities=26% Similarity=0.314 Sum_probs=204.6
Q ss_pred ccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH
Q psy12466 365 TVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444 (680)
Q Consensus 365 ~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll 444 (680)
.+|+.+...|.|||++||.|.+++ +++++||||||||||+|||+++.++...++ .|||||.++.
T Consensus 190 v~d~kLvs~LlPFQreGv~faL~R--------gGR~llADeMGLGKTiQAlaIA~yyraEwp--------lliVcPAsvr 253 (689)
T KOG1000|consen 190 VMDPKLVSRLLPFQREGVIFALER--------GGRILLADEMGLGKTIQALAIARYYRAEWP--------LLIVCPASVR 253 (689)
T ss_pred ccCHHHHHhhCchhhhhHHHHHhc--------CCeEEEecccccchHHHHHHHHHHHhhcCc--------EEEEecHHHh
Confidence 347788899999999999999874 688999999999999999999999999875 8999999999
Q ss_pred HHHHHHHHHHhCCCCe-eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH
Q psy12466 445 SNWNDEFKKWLGLTRM-CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL 523 (680)
Q Consensus 445 ~qW~~E~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~ 523 (680)
..|.+++.+|+|...- .+..+.+..-.. .-....|.|++|+++....+.+...+|.+||+||+|.+|+..++..++
T Consensus 254 ftWa~al~r~lps~~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka 330 (689)
T KOG1000|consen 254 FTWAKALNRFLPSIHPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKA 330 (689)
T ss_pred HHHHHHHHHhcccccceEEEecccCCccc---cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhh
Confidence 9999999999997543 333332221110 011345999999999999888988899999999999999999999999
Q ss_pred HHhc--ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhc
Q psy12466 524 MTGL--NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTA 601 (680)
Q Consensus 524 l~~l--~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 601 (680)
+..+ .+.|.++|||||--.++.|||.++..+++.+|++..+|..+|++.-..+...+ ..+-.+..+|+.+|.
T Consensus 331 ~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D------ykg~tnl~EL~~lL~ 404 (689)
T KOG1000|consen 331 ATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD------YKGCTNLEELAALLF 404 (689)
T ss_pred hhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee------cCCCCCHHHHHHHHH
Confidence 8877 78899999999999999999999999999999999999999998433222222 234456778888875
Q ss_pred c-ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHH
Q psy12466 602 G-FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYW 643 (680)
Q Consensus 602 ~-f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~ 643 (680)
. .|+||+|.+|..+||+|..+++ +...+.+-+..++++...
T Consensus 405 k~lMIRRlK~dvL~qLPpKrr~Vv-~~~~gr~da~~~~lv~~a 446 (689)
T KOG1000|consen 405 KRLMIRRLKADVLKQLPPKRREVV-YVSGGRIDARMDDLVKAA 446 (689)
T ss_pred HHHHHHHHHHHHHhhCCccceEEE-EEcCCccchHHHHHHHHh
Confidence 4 5999999999999999955544 445555555555555433
|
|
| >KOG0383|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-33 Score=315.40 Aligned_cols=278 Identities=33% Similarity=0.450 Sum_probs=243.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
..|.+||.+|++|+... ...+..+|||||||+|||+++++++..+...+... .|.|+++|.+.+.+|..|+
T Consensus 294 g~L~~~qleGln~L~~~-----ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~----~P~Lv~ap~sT~~nwe~e~ 364 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRIS-----WSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSP----GPPLVVAPLSTIVNWEREF 364 (696)
T ss_pred ccccccchhhhhhhhcc-----cccCCCcccchhhcCCceeeEEEEEeecccccCCC----CCceeeccCccccCCCCch
Confidence 67999999999999764 46778899999999999999999998887766432 3589999999999999999
Q ss_pred HHHhCCCCeeEeecCCcchhh---------hh-------------hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcC
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAE---------DY-------------VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDE 509 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~---------~~-------------~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDE 509 (680)
..|.|+..+..+.|....+.. +. ...-.+.+.+++|++...+...+....|.++|+||
T Consensus 365 ~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde 444 (696)
T KOG0383|consen 365 ELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDE 444 (696)
T ss_pred hccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEeec
Confidence 999999999999887764321 00 11234678999999999888889999999999999
Q ss_pred cccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhh
Q psy12466 510 GHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589 (680)
Q Consensus 510 aH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~ 589 (680)
+|+++|..+...+.+......+++++||||.+|++.+|+++|+|+.|+.|.+...|.+.|... ..
T Consensus 445 ~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~---------------~~ 509 (696)
T KOG0383|consen 445 AHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI---------------SC 509 (696)
T ss_pred hhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------hH
Confidence 999999999999999999999999999999999999999999999999999999998888762 24
Q ss_pred hhHHHHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh----chhhHHHHHHHHHHhccC
Q psy12466 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA----SRDSHLSVTHALRKICNH 665 (680)
Q Consensus 590 ~~~~~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~----~~~~~l~~l~~LRqicnH 665 (680)
.+....|+.++.|+++||.+.++...+|.|.+-++.+.|++.|+++|+.++......+ .....++++|.|||+|||
T Consensus 510 ~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~h 589 (696)
T KOG0383|consen 510 EEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNH 589 (696)
T ss_pred HHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcC
Confidence 5667889999999999999999998899999999999999999999999987655444 445678999999999999
Q ss_pred ccccCCCC
Q psy12466 666 PGLVQQPD 673 (680)
Q Consensus 666 P~L~~~~~ 673 (680)
|+++...+
T Consensus 590 py~~~~~e 597 (696)
T KOG0383|consen 590 PYLSPLEE 597 (696)
T ss_pred cccCcccc
Confidence 99998843
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=299.00 Aligned_cols=254 Identities=23% Similarity=0.323 Sum_probs=183.1
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWND 449 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~ 449 (680)
....|.|||...+..+..+ ...++|||||||||||++|++++..+...+. ++|+|||||.+|+.||..
T Consensus 149 ~~~~l~pHQl~~~~~vl~~-------~~~R~LLADEvGLGKTIeAglil~~l~~~g~-----~~rvLIVvP~sL~~QW~~ 216 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRR-------HAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-----AERVLILVPETLQHQWLV 216 (956)
T ss_pred CCCCCCHHHHHHHHHHhhc-------cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-----CCcEEEEcCHHHHHHHHH
Confidence 3456999999999877543 4578999999999999999999998877664 567999999999999999
Q ss_pred HHHHHhCCCCeeEeecCCcchh--hhhhhcCCCCEEEEeHHHHHHH---HHhhhccCceEEEEcCcccccC---cccHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKA--EDYVYSRVSPVLIISYEMLIRA---YQTIVDTEFDLLICDEGHRLKN---GKSKLY 521 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~vvI~ty~~l~~~---~~~l~~~~~~~vIlDEaH~~kn---~~s~~~ 521 (680)
|+.+++. ..+.++........ .........+++|+||+.+.++ .+.+....|++||+||||++++ ..++.+
T Consensus 217 El~~kF~-l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 217 EMLRRFN-LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HHHHHhC-CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 9988775 34444443321111 0111223578999999999863 3456678999999999999985 356678
Q ss_pred HHHHhc--ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhh--hh-------hccCCCCChHHHHH---
Q psy12466 522 ELMTGL--NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEE--PI-------LESRSPNSTEAQKS--- 587 (680)
Q Consensus 522 ~~l~~l--~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~--~i-------~~~~~~~~~~~~~~--- 587 (680)
+.+..+ +++++++|||||++|+..|+|++++||+|+.|+++..|.+..+. |+ ..+...........
T Consensus 296 ~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~l 375 (956)
T PRK04914 296 QVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGEL 375 (956)
T ss_pred HHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 888888 67799999999999999999999999999999999999875543 21 11111010000000
Q ss_pred hh------------------h-hHHHHHHHH-----hccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHH
Q psy12466 588 LG------------------E-LRSSQLAKR-----TAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYL 637 (680)
Q Consensus 588 ~~------------------~-~~~~~L~~~-----l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~ 637 (680)
++ . .+...+..+ ...+|+|+++.++. .+|.+..+.+.++|++..+..+.
T Consensus 376 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 376 LGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred hcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHH
Confidence 00 0 011112222 23689999999986 69999999999999776655543
|
|
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=286.03 Aligned_cols=280 Identities=24% Similarity=0.328 Sum_probs=224.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC--CCCCccceEEEEeccchHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP--YGMPVIRKVLIVTPSSLTSNWNDEFKKWL 455 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~--~~~~~~~~~LIV~P~sll~qW~~E~~~~~ 455 (680)
|.....|++... .......|||+||+||+|||+++++++.......+ .+....+.+|||||.+++.||..|+.+..
T Consensus 135 ~~~~~~~~~~~~--~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~ 212 (674)
T KOG1001|consen 135 LKQKYRWSLLKS--REQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVT 212 (674)
T ss_pred HHHHHHHHhhcc--cccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccC
Confidence 555555655432 34567789999999999999999999877654433 00112456999999999999999995554
Q ss_pred C--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEE
Q psy12466 456 G--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRI 533 (680)
Q Consensus 456 ~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rl 533 (680)
. .+.+.+|+| +.........++||+|||.++.. ..+....|-++|+||||.++|.+++.++++..+.+.+||
T Consensus 213 ~~~~l~v~v~~g----r~kd~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RW 286 (674)
T KOG1001|consen 213 EEDKLSIYVYHG----RTKDKSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRW 286 (674)
T ss_pred CccceEEEEecc----cccccchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeeccceee
Confidence 3 355666776 22233333467899999999975 455668999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHH-
Q psy12466 534 LLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQ- 612 (680)
Q Consensus 534 lLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v- 612 (680)
+|||||++|++.|+|+++.|+.-.++.....|...+..|+..... ......++.+++.+++||+|...
T Consensus 287 cLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~~~~k~l~~~L~~v~lrrtK~~~~ 355 (674)
T KOG1001|consen 287 CLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------KEGVKTLQGILKKVMLRRTKEMEV 355 (674)
T ss_pred eecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------HHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999988754322 23456788899999999998522
Q ss_pred ----hhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-----------chhhHHHHHHHHHHhccCccccCCCCCcc
Q psy12466 613 ----ASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA-----------SRDSHLSVTHALRKICNHPGLVQQPDMME 676 (680)
Q Consensus 613 ----~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-----------~~~~~l~~l~~LRqicnHP~L~~~~~~~~ 676 (680)
...||++...++.+.++..++..|..+........ +...++..+.+|||+||||.|+....+..
T Consensus 356 ~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~ 434 (674)
T KOG1001|consen 356 DGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSL 434 (674)
T ss_pred cCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhcc
Confidence 23699999999999999999999999887665443 44567888999999999999998765543
|
|
| >KOG0298|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=249.01 Aligned_cols=264 Identities=18% Similarity=0.231 Sum_probs=201.6
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhc-----------CCCCCCccceEEEEeccchHHHHHHHHHHHhCCC-Cee
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQ-----------GPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLT-RMC 461 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~-----------~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~-~v~ 461 (680)
...+..+++|||||+|||...+++....... .....-..+.+|||||++++.||-.||.++++.. +++
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEE
Confidence 3345567999999999999988875443211 0011122467999999999999999999999887 888
Q ss_pred EeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh----------------------hhccCceEEEEcCcccccCcccH
Q psy12466 462 PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT----------------------IVDTEFDLLICDEGHRLKNGKSK 519 (680)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~----------------------l~~~~~~~vIlDEaH~~kn~~s~ 519 (680)
.|.|..+.--......-.+|||+|||+.++..+.. |....|-+||+||||.+....|.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~ 530 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSA 530 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHH
Confidence 88876544322223335799999999999876532 23356899999999999999999
Q ss_pred HHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHH
Q psy12466 520 LYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKR 599 (680)
Q Consensus 520 ~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~ 599 (680)
.++.+..|.+.++|++||||+++ +.||+.+|.||.-.+|.....|......++.. ......+.++
T Consensus 531 ~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~--------------ra~~~~~~dl 595 (1394)
T KOG0298|consen 531 AAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQL--------------RAKCEPLLDL 595 (1394)
T ss_pred HHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHH--------------HhhhhhHHHH
Confidence 99999999999999999999999 99999999999999999999987777664421 1334567888
Q ss_pred hccceeeechhHHhh--cCCCcEEEEEEecCCHHHHHHHH----HHHHHHHHHh--------------------chhhHH
Q psy12466 600 TAGFILRRTSDVQAS--LLNSKRETLLVCRATPLQQSLYL----RCVEYWDARA--------------------SRDSHL 653 (680)
Q Consensus 600 l~~f~lRrtk~~v~~--~LP~k~e~~v~v~ms~~Q~~lY~----~l~~~~~~~~--------------------~~~~~l 653 (680)
+...+-|+.+..+.. .+|+..+.+-...+++.|-.+|+ ..+.++.... ....++
T Consensus 596 ~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~ 675 (1394)
T KOG0298|consen 596 FKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIIL 675 (1394)
T ss_pred HHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHH
Confidence 888999999877755 47888888888888888766654 3444443222 223467
Q ss_pred HHHHHHHHhccCccccCCC
Q psy12466 654 SVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 654 ~~l~~LRqicnHP~L~~~~ 672 (680)
..+.+|||+||||...+.-
T Consensus 676 ~~l~rLRq~Cchplv~~~~ 694 (1394)
T KOG0298|consen 676 KWLLRLRQACCHPLVGNSN 694 (1394)
T ss_pred HHHHHHHHhhcccccccCC
Confidence 8899999999999876543
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=224.04 Aligned_cols=108 Identities=21% Similarity=0.303 Sum_probs=96.2
Q ss_pred CCCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh-------------hcccCCCCEEEEehhHHHHHHHh
Q psy12466 190 SYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED-------------YVYSRVSPVLIISYEMLIRAYQT 256 (680)
Q Consensus 190 ~~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~V~itsYe~l~~~~~~ 256 (680)
...+++|||||++++.||.+||.+|.|..++.+||+.+...+.. .......+|+||||+.++...+.
T Consensus 253 k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~ 332 (923)
T KOG0387|consen 253 KLTKPALIVCPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDD 332 (923)
T ss_pred cccCceEEEccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcc
Confidence 34689999999999999999999999999999999988632211 11234467999999999999999
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccC
Q psy12466 257 IVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSG 297 (680)
Q Consensus 257 l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG 297 (680)
+..+.|+++|+||||+||||+|+++.+|++|++.+||+|||
T Consensus 333 l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSG 373 (923)
T KOG0387|consen 333 LLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSG 373 (923)
T ss_pred cccccccEEEecCcccccCCccHHHHHHHhccccceEEeeC
Confidence 99999999999999999999999999999999999999999
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=222.32 Aligned_cols=146 Identities=31% Similarity=0.413 Sum_probs=122.6
Q ss_pred CCccCCCCCCCCCCchhHHh-----------------------------------------------hcCCCCCeEEEEE
Q psy12466 167 AKTEVNPLILPKPIVDHQEK-----------------------------------------------NRRSYILRVLIVT 199 (680)
Q Consensus 167 ~~~~~~p~~l~~~L~~hQ~~-----------------------------------------------~~~~~~~~~LIV~ 199 (680)
....++| .+.+.|+|||+| +..+.|++.||||
T Consensus 227 v~v~~dP-~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~ 305 (776)
T KOG0390|consen 227 VHVVIDP-LLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVA 305 (776)
T ss_pred ceEEecc-cHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEc
Confidence 5667899 899999999998 3345689999999
Q ss_pred CcccHHHHHHHHHHHhCCCCeeEEeecCCcch---------hhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 200 PSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA---------EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 200 P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
|+||+.||++||.||....++..+..++..+. ..........|+++|||+++.+.+.+....++++|||||
T Consensus 306 P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEG 385 (776)
T KOG0390|consen 306 PSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEG 385 (776)
T ss_pred cHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCC
Confidence 99999999999999998667777777665542 122233446799999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccCCCCCCCCCCchhhhHHHhh
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQ 316 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG~~~~~~~~~~~e~~~~~~~ 316 (680)
|++||..+++.+++.++++.+|++|||+ +.++.+.|+..-...
T Consensus 386 HrlkN~~s~~~kaL~~l~t~rRVLLSGT---p~QNdl~EyFnlL~f 428 (776)
T KOG0390|consen 386 HRLKNSDSLTLKALSSLKTPRRVLLTGT---PIQNDLKEYFNLLDF 428 (776)
T ss_pred CCccchhhHHHHHHHhcCCCceEEeeCC---cccccHHHHHHHHhh
Confidence 9999999999999999999999999985 477877777654433
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=211.99 Aligned_cols=150 Identities=19% Similarity=0.400 Sum_probs=114.6
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~ 449 (680)
...|||||.+++.+++.. ...++|+|..+||+|||+++++++..+. +++|||||.. ++.||.+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~------gr~r~GIIvLPtGaGKTlvai~aa~~l~----------k~tLILvps~~Lv~QW~~ 316 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVTAACTVK----------KSCLVLCTSAVSVEQWKQ 316 (732)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCCcEEEeCCCCChHHHHHHHHHHhC----------CCEEEEeCcHHHHHHHHH
Confidence 468999999999988642 2236899999999999999999887652 2499999985 5799999
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH----------HHhhhccCceEEEEcCcccccCcc
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA----------YQTIVDTEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~----------~~~l~~~~~~~vIlDEaH~~kn~~ 517 (680)
+|.+|+. ...+..+.+..+... ....+|+|+||+++... ++.+....|++||+||||++.+
T Consensus 317 ef~~~~~l~~~~I~~~tg~~k~~~-----~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-- 389 (732)
T TIGR00603 317 QFKMWSTIDDSQICRFTSDAKERF-----HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-- 389 (732)
T ss_pred HHHHhcCCCCceEEEEecCccccc-----ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--
Confidence 9999974 334455554332211 23478999999998532 3445567899999999999943
Q ss_pred cHHHHHHHhcccceEEEEeCCCCCCC
Q psy12466 518 SKLYELMTGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 518 s~~~~~l~~l~~~~rllLTgTP~~n~ 543 (680)
....+.+..+.+.+||+|||||++++
T Consensus 390 ~~fr~il~~l~a~~RLGLTATP~ReD 415 (732)
T TIGR00603 390 AMFRRVLTIVQAHCKLGLTATLVRED 415 (732)
T ss_pred HHHHHHHHhcCcCcEEEEeecCcccC
Confidence 34445677789999999999999876
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-20 Score=208.09 Aligned_cols=111 Identities=22% Similarity=0.297 Sum_probs=100.0
Q ss_pred CCCCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchh---hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEE
Q psy12466 189 RSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLL 265 (680)
Q Consensus 189 ~~~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~v 265 (680)
+....+.||+||.|++.||.+||++|+|..++.+|+|+...+.. .......++|+|||||+..++...|.+.+|.++
T Consensus 214 ~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~yl 293 (971)
T KOG0385|consen 214 KGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYL 293 (971)
T ss_pred cCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEE
Confidence 44466899999999999999999999999999999999865443 233445789999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|+||||||||.++..++.++.+.+..|++|||+.
T Consensus 294 vIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTP 327 (971)
T KOG0385|consen 294 VIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTP 327 (971)
T ss_pred EechhhhhcchhhHHHHHHHHhcccceeEeeCCc
Confidence 9999999999999999999999999999999953
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-19 Score=210.61 Aligned_cols=129 Identities=20% Similarity=0.270 Sum_probs=109.5
Q ss_pred CCCCCCCCCCchhHHh-------------------------------------hcCCCCCeEEEEECcccHHHHHHHHHH
Q psy12466 171 VNPLILPKPIVDHQEK-------------------------------------NRRSYILRVLIVTPSSLTSNWNDEFKK 213 (680)
Q Consensus 171 ~~p~~l~~~L~~hQ~~-------------------------------------~~~~~~~~~LIV~P~sl~~nW~~E~~k 213 (680)
.+|..+...|++||.+ ..+....++|||||+|++.||.+||.+
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~k 240 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRR 240 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHH
Confidence 4566677789999988 122345689999999999999999999
Q ss_pred HhCCCCeeEEeecCCcchh---hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCC
Q psy12466 214 WLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSL 290 (680)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~ 290 (680)
|+|..++..|+++...+.. .......++|+||||+++.+....|.+..|++|||||||+|||++++++++++.+.+.
T Consensus 241 w~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~ 320 (1033)
T PLN03142 241 FCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTN 320 (1033)
T ss_pred HCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcC
Confidence 9998888888887644322 1223356899999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCC
Q psy12466 291 PRKSDSGIG 299 (680)
Q Consensus 291 ~r~~LTG~~ 299 (680)
+|++|||+.
T Consensus 321 ~RLLLTGTP 329 (1033)
T PLN03142 321 YRLLITGTP 329 (1033)
T ss_pred cEEEEecCC
Confidence 999999964
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-19 Score=202.02 Aligned_cols=105 Identities=20% Similarity=0.327 Sum_probs=97.3
Q ss_pred eEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCCC
Q psy12466 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLL 273 (680)
Q Consensus 194 ~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~l 273 (680)
+.|||||.+|.++|+.|++||+|..++..|+|....+....-....++|+||||+.+|++.+.+.++.|.++|+||||.|
T Consensus 1033 PSLIVCPsTLtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1033 PSLIVCPSTLTGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred CeEEECCchhhhHHHHHHHHhcchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCccee
Confidence 57999999999999999999999989999998876666655555678999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCceeccCC
Q psy12466 274 KPPSGNSPGNDSGIPSLPRKSDSGI 298 (680)
Q Consensus 274 KN~~s~~~~a~~~l~~~~r~~LTG~ 298 (680)
||.+++.+++++.|++.+|++|||+
T Consensus 1113 kN~ktkl~kavkqL~a~hRLILSGT 1137 (1549)
T KOG0392|consen 1113 KNSKTKLTKAVKQLRANHRLILSGT 1137 (1549)
T ss_pred cchHHHHHHHHHHHhhcceEEeeCC
Confidence 9999999999999999999999984
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-18 Score=180.92 Aligned_cols=138 Identities=19% Similarity=0.243 Sum_probs=112.0
Q ss_pred ccccccCCCccCCCCCCCCCCchhHHh----------------------------------hcCCCCCeEEEEECcccHH
Q psy12466 160 KSRLSLHAKTEVNPLILPKPIVDHQEK----------------------------------NRRSYILRVLIVTPSSLTS 205 (680)
Q Consensus 160 ~~~~~~~~~~~~~p~~l~~~L~~hQ~~----------------------------------~~~~~~~~~LIV~P~sl~~ 205 (680)
..+.+......-+|..|.-||+|+|+| .....-.++|||||...+.
T Consensus 165 de~~p~i~e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VAlm 244 (791)
T KOG1002|consen 165 DEANPVIAERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVALM 244 (791)
T ss_pred hhcCchhhhcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccHHHHH
Confidence 345556667778899999999999998 1112334689999999999
Q ss_pred HHHHHHHHHh-CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH-----------------hhhcCCCcEEEE
Q psy12466 206 NWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-----------------TIVDTEFDLLIC 267 (680)
Q Consensus 206 nW~~E~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-----------------~l~~~~~~~vI~ 267 (680)
||++||.+++ +..++.+|||..+..... ....|+|++|||..+...++ .|+.+.|..||+
T Consensus 245 QW~nEI~~~T~gslkv~~YhG~~R~~nik--el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIl 322 (791)
T KOG1002|consen 245 QWKNEIERHTSGSLKVYIYHGAKRDKNIK--ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIIL 322 (791)
T ss_pred HHHHHHHHhccCceEEEEEecccccCCHH--HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeeh
Confidence 9999999998 556677777765544333 33679999999999876443 367788999999
Q ss_pred cCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 268 DEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 268 DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
||||.||+..+.+++|+..|.+.+||+|+|+.
T Consensus 323 DEAH~IK~R~snTArAV~~L~tt~rw~LSGTP 354 (791)
T KOG1002|consen 323 DEAHNIKDRQSNTARAVFALETTYRWCLSGTP 354 (791)
T ss_pred hhhcccccccccHHHHHHhhHhhhhhhccCCc
Confidence 99999999999999999999999999999864
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-18 Score=191.36 Aligned_cols=115 Identities=25% Similarity=0.309 Sum_probs=97.6
Q ss_pred CCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHH---HHHhhhcCCCcE
Q psy12466 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIR---AYQTIVDTEFDL 264 (680)
Q Consensus 192 ~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~---~~~~l~~~~~~~ 264 (680)
-.+-|||||+|++.||.+||.||||..++..|||+...+... ......++|++|+|.++.. +...|...+|++
T Consensus 448 ~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~ 527 (941)
T KOG0389|consen 448 PGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNY 527 (941)
T ss_pred CCCcEEEecchhHHHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccE
Confidence 346799999999999999999999999999999998654432 1123478999999999964 455788899999
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCCCceeccCCCCCCCCCCchh
Q psy12466 265 LICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEE 309 (680)
Q Consensus 265 vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~~~~~~~~~~e 309 (680)
+|+||||.|||..|.+++.+..|++..|++|||+. .+.-|.|
T Consensus 528 viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTP---LQNNL~E 569 (941)
T KOG0389|consen 528 VIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTP---LQNNLKE 569 (941)
T ss_pred EEecchhhhhccchHHHHHhccccccceEEeeCCc---ccccHHH
Confidence 99999999999999999999999999999999864 5554444
|
|
| >KOG1016|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-18 Score=188.39 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=130.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCcccccccCCCccCCCCCCCCCCchhHHh----------------------------
Q psy12466 135 AQTSSVNAQTSSVSASSSLPWRPVKKSRLSLHAKTEVNPLILPKPIVDHQEK---------------------------- 186 (680)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~L~~hQ~~---------------------------- 186 (680)
....+++...++++..+++ -++..+++......+.| .++.-++|||..
T Consensus 214 k~g~hvkD~~n~~d~~Grv---~VN~~HPeeee~iflap-qla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAH 289 (1387)
T KOG1016|consen 214 KKGRHVKDLENTEDKEGRV---LVNAGHPEEEEDIFLAP-QLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAH 289 (1387)
T ss_pred ccCcchhhhhcCccccCcE---EEecCCCCCCcceeehh-hhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeee
Confidence 4667788888889999998 77888899988999999 899999999986
Q ss_pred -----------------hcCCCCCeEEEEECcccHHHHHHHHHHHhCC--------C-CeeEEeecCCcch------hhh
Q psy12466 187 -----------------NRRSYILRVLIVTPSSLTSNWNDEFKKWLGL--------T-RMCPYHVNQKNKA------EDY 234 (680)
Q Consensus 187 -----------------~~~~~~~~~LIV~P~sl~~nW~~E~~k~~~~--------~-~~~~~~~~~~~~~------~~~ 234 (680)
.+...++++|+|+|..++.||..||++|.|. . .+.++..+...+. ...
T Consensus 290 SMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~ 369 (1387)
T KOG1016|consen 290 SMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIE 369 (1387)
T ss_pred ccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHH
Confidence 3444678999999999999999999999974 1 1334444332211 113
Q ss_pred cccCCCCEEEEehhHHHHHH--------------------------------------HhhhcCCCcEEEEcCCCCCCCC
Q psy12466 235 VYSRVSPVLIISYEMLIRAY--------------------------------------QTIVDTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 235 ~~~~~~~V~itsYe~l~~~~--------------------------------------~~l~~~~~~~vI~DEaH~lKN~ 276 (680)
.|-..++|+++.||++|... ..|.+.++|+|||||||||||.
T Consensus 370 ~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~ 449 (1387)
T KOG1016|consen 370 QWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNI 449 (1387)
T ss_pred HHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccc
Confidence 47778999999999998643 1256677999999999999999
Q ss_pred CCCCCccccCCCCCCceeccCCC
Q psy12466 277 SGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 277 ~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
.+.++.|++.|++++|++|||+.
T Consensus 450 ~A~iS~aLk~IrtrRRiVLTGYP 472 (1387)
T KOG1016|consen 450 TAEISMALKAIRTRRRIVLTGYP 472 (1387)
T ss_pred hHHHHHHHHHhhhceeEEEeccc
Confidence 99999999999999999999953
|
|
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-18 Score=194.28 Aligned_cols=118 Identities=24% Similarity=0.365 Sum_probs=95.5
Q ss_pred CCCCeEEEEECcccHHHHHHHHHHHhCC----CCeeEEeecCCcch-----hhhcccCCCCEEEEehhHHHHHH------
Q psy12466 190 SYILRVLIVTPSSLTSNWNDEFKKWLGL----TRMCPYHVNQKNKA-----EDYVYSRVSPVLIISYEMLIRAY------ 254 (680)
Q Consensus 190 ~~~~~~LIV~P~sl~~nW~~E~~k~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~V~itsYe~l~~~~------ 254 (680)
..++++|||||.+++.||.+||.+|.+. ..+.++..+...+. ....|...++|+|+.|+++|...
T Consensus 726 lg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk 805 (1567)
T KOG1015|consen 726 LGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVK 805 (1567)
T ss_pred cCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchh
Confidence 4578999999999999999999999974 24556655543321 12447788899999999999743
Q ss_pred ---------HhhhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCCCCCCCCCchhh
Q psy12466 255 ---------QTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEES 310 (680)
Q Consensus 255 ---------~~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~~~~~~~~~~e~ 310 (680)
..|.+.++|+|||||||.|||..+.+++|+..+.+++||+|||+ |.+.-|+|+
T Consensus 806 ~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGT---PLQNNLmEY 867 (1567)
T KOG1015|consen 806 SRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGT---PLQNNLMEY 867 (1567)
T ss_pred hhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecC---chhhhhHHH
Confidence 23566889999999999999999999999999999999999985 456666665
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-19 Score=191.86 Aligned_cols=132 Identities=18% Similarity=0.264 Sum_probs=104.7
Q ss_pred CCCccCCCCCCCCCCchhHHh---------------------------------------------hcCCCCCeEEEEEC
Q psy12466 166 HAKTEVNPLILPKPIVDHQEK---------------------------------------------NRRSYILRVLIVTP 200 (680)
Q Consensus 166 ~~~~~~~p~~l~~~L~~hQ~~---------------------------------------------~~~~~~~~~LIV~P 200 (680)
..+..-+|.++..+|+|||+. ...+...++|||||
T Consensus 312 et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P 391 (901)
T KOG4439|consen 312 ETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP 391 (901)
T ss_pred cccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc
Confidence 344456788899999999976 12223446999999
Q ss_pred cccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHH----------HHHhhhcCCCcEEEEc
Q psy12466 201 SSLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIR----------AYQTIVDTEFDLLICD 268 (680)
Q Consensus 201 ~sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~----------~~~~l~~~~~~~vI~D 268 (680)
+||+.||..||++-+.. .++..|||.++ +.........|+||||||..+.+ ....|..+.|.+||+|
T Consensus 392 aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILD 470 (901)
T KOG4439|consen 392 ASLIHQWEAEVARRLEQNALSVYLYHGPNK-REISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILD 470 (901)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEecCCcc-ccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhh
Confidence 99999999999999854 45556666553 22233344789999999999987 1224777889999999
Q ss_pred CCCCCCCCCCCCCccccCCCCCCceeccCC
Q psy12466 269 EKSLLKPPSGNSPGNDSGIPSLPRKSDSGI 298 (680)
Q Consensus 269 EaH~lKN~~s~~~~a~~~l~~~~r~~LTG~ 298 (680)
|||.|||++++.+.|+..|.+.+||+|||+
T Consensus 471 EAH~IrN~~tq~S~AVC~L~a~~RWclTGT 500 (901)
T KOG4439|consen 471 EAHNIRNSNTQCSKAVCKLSAKSRWCLTGT 500 (901)
T ss_pred hhhhhcccchhHHHHHHHHhhcceeecccC
Confidence 999999999999999999999999999984
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-18 Score=197.93 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=95.9
Q ss_pred eEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchh---hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 194 ~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
+-|||+|+|++-||+-||++|||.+++..|+|..+.+.. .+.....+.|+||||.++..+...+.+.+|.++|+|||
T Consensus 667 PHLIVVpTsviLnWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 667 PHLIVVPTSVILNWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEA 746 (1958)
T ss_pred CceEEeechhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhh
Confidence 459999999999999999999999999999999875443 34445668899999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccC
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSG 297 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG 297 (680)
|+|||.+++.++|+..+++++|++|||
T Consensus 747 qnIKnfksqrWQAllnfnsqrRLLLtg 773 (1958)
T KOG0391|consen 747 QNIKNFKSQRWQALLNFNSQRRLLLTG 773 (1958)
T ss_pred hhhcchhHHHHHHHhccchhheeeecC
Confidence 999999999999999999999999999
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-16 Score=152.96 Aligned_cols=155 Identities=25% Similarity=0.391 Sum_probs=109.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+|||||.+++..+.+.+... ...+.+++..++|+|||.++++++..+.. ++||+||. +++.||.++|
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~--~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENK--KEERRVLLNAPTGSGKTIIALALILELAR----------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTT--SGCSEEEEEESTTSSHHHHHHHHHHHHHC----------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc--CCCCCEEEEECCCCCcChhhhhhhhcccc----------ceeEecCHHHHHHHHHHHH
Confidence 59999999999988753211 13688999999999999999998888776 38999998 8889999999
Q ss_pred HHHhCCCCeeEeecC-------------CcchhhhhhhcCCCCEEEEeHHHHHHHHHh-------------hhccCceEE
Q psy12466 452 KKWLGLTRMCPYHVN-------------QKNKAEDYVYSRVSPVLIISYEMLIRAYQT-------------IVDTEFDLL 505 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~-------------~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-------------l~~~~~~~v 505 (680)
..+............ ..............++++++|+.+...... .....+++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 887765433321110 000111122335678999999999876543 233478999
Q ss_pred EEcCcccccCcccHHHHHHHhcccceEEEEeCCCCC
Q psy12466 506 ICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 506 IlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~ 541 (680)
|+||||++.+... ++.+......++++|||||.+
T Consensus 151 I~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 151 IIDEAHHYPSDSS--YREIIEFKAAFILGLTATPFR 184 (184)
T ss_dssp EEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S-
T ss_pred EEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCccC
Confidence 9999999854332 666666888999999999963
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-16 Score=170.76 Aligned_cols=205 Identities=22% Similarity=0.297 Sum_probs=144.7
Q ss_pred ccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHH
Q psy12466 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNW 447 (680)
Q Consensus 369 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW 447 (680)
.....|||||.+++..+...+ .. .+.|++...+|.|||+.++.++..+... +|||||. .++.||
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~----~~-~~~gvivlpTGaGKT~va~~~~~~~~~~----------~Lvlv~~~~L~~Qw 96 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNR----RT-ERRGVIVLPTGAGKTVVAAEAIAELKRS----------TLVLVPTKELLDQW 96 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhc----cc-CCceEEEeCCCCCHHHHHHHHHHHhcCC----------EEEEECcHHHHHHH
Confidence 345679999999999887632 22 6889999999999999999999876543 8999997 677999
Q ss_pred HHHHHHHhCCC-CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH--HHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 448 NDEFKKWLGLT-RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA--YQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 448 ~~E~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~--~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
.+.+.++++.. .+..+.+...... . ..|.|+||+++.+. ...+....|++||+||||++..+... +.+
T Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~ 167 (442)
T COG1061 97 AEALKKFLLLNDEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RIL 167 (442)
T ss_pred HHHHHHhcCCccccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHH
Confidence 99898887654 3444444332211 1 46999999999885 45555568999999999998543333 334
Q ss_pred Hhcccce-EEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccc
Q psy12466 525 TGLNIRK-RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGF 603 (680)
Q Consensus 525 ~~l~~~~-rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f 603 (680)
..+...+ +++|||||...+......++.++.|-.+
T Consensus 168 ~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy-------------------------------------------- 203 (442)
T COG1061 168 ELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVY-------------------------------------------- 203 (442)
T ss_pred HhhhcccceeeeccCceeecCCchhHHHHhcCCeEe--------------------------------------------
Confidence 4455666 9999999986654455444444442221
Q ss_pred eeeec-hhHHh-hcCCCcEEEEEEecCCHHHHHHHHHHHHHH
Q psy12466 604 ILRRT-SDVQA-SLLNSKRETLLVCRATPLQQSLYLRCVEYW 643 (680)
Q Consensus 604 ~lRrt-k~~v~-~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~ 643 (680)
... ++.+. ..|.+.....+.+.++......|.......
T Consensus 204 --~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 204 --EVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred --ecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 122 22222 457778888889999999988888765544
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-14 Score=167.76 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=117.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
++|+||.+.+..+++ +++++++++|+|||++++.++....... .+++|||||+ .++.||.+++
T Consensus 15 ~~r~yQ~~~~~~~l~----------~n~lv~~ptG~GKT~~a~~~i~~~l~~~------~~~vLvl~Pt~~L~~Q~~~~~ 78 (773)
T PRK13766 15 EARLYQQLLAATALK----------KNTLVVLPTGLGKTAIALLVIAERLHKK------GGKVLILAPTKPLVEQHAEFF 78 (773)
T ss_pred CccHHHHHHHHHHhc----------CCeEEEcCCCccHHHHHHHHHHHHHHhC------CCeEEEEeCcHHHHHHHHHHH
Confidence 579999998877653 3799999999999999988877665321 2479999998 7889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccCcccHHHHHHH--
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNGKSKLYELMT-- 525 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~-- 525 (680)
.++++. ..+..+.+....... ......++|+|+|++.+..+.. .+.-..|++||+||||++.+..+..+.+-.
T Consensus 79 ~~~~~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 79 RKFLNIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHHhCCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 998754 356666665443322 2222357899999999977542 233346999999999999765443332211
Q ss_pred -hcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 526 -GLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 526 -~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
..+..++++|||||..+ ...+..+++-|.
T Consensus 158 ~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~ 187 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSD-EEKIKEVCENLG 187 (773)
T ss_pred hcCCCCEEEEEEcCCCCC-HHHHHHHHHhCC
Confidence 12455689999999775 556666666554
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-16 Score=167.56 Aligned_cols=129 Identities=22% Similarity=0.285 Sum_probs=111.2
Q ss_pred cCCCCCCCCCCchhHHh-------------------------------------hcCCCCCeEEEEECcccHHHHHHHHH
Q psy12466 170 EVNPLILPKPIVDHQEK-------------------------------------NRRSYILRVLIVTPSSLTSNWNDEFK 212 (680)
Q Consensus 170 ~~~p~~l~~~L~~hQ~~-------------------------------------~~~~~~~~~LIV~P~sl~~nW~~E~~ 212 (680)
.-+|..+...|+.+|.. .....-.++|||+|+|++.||.+||.
T Consensus 558 V~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEis 637 (1185)
T KOG0388|consen 558 VPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEIS 637 (1185)
T ss_pred ccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHHH
Confidence 34577888889999987 11112347899999999999999999
Q ss_pred HHhCCCCeeEEeecCCcchhh---------hcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCCCCCCCCCcc
Q psy12466 213 KWLGLTRMCPYHVNQKNKAED---------YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGN 283 (680)
Q Consensus 213 k~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lKN~~s~~~~a 283 (680)
+|+|.+++.+|.|+...+... +.....++|+||||.++..+..-|.+++|.++|+|||+-||...+.+++.
T Consensus 638 rFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~RWKt 717 (1185)
T KOG0388|consen 638 RFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSRWKT 717 (1185)
T ss_pred HhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhHHHH
Confidence 999999999999987654432 22445678999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceeccCC
Q psy12466 284 DSGIPSLPRKSDSGI 298 (680)
Q Consensus 284 ~~~l~~~~r~~LTG~ 298 (680)
+..++|+.|++|||+
T Consensus 718 LLsF~cRNRLLLTGT 732 (1185)
T KOG0388|consen 718 LLSFKCRNRLLLTGT 732 (1185)
T ss_pred HhhhhccceeeecCC
Confidence 999999999999994
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-16 Score=174.25 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=94.6
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEc
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICD 268 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~D 268 (680)
...+.|||+|.|++.||..||.+|.|......|.|....+... ......++|++|+||.+.++...|.++.|.++|+|
T Consensus 443 ~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIID 522 (1157)
T KOG0386|consen 443 MQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIID 522 (1157)
T ss_pred cCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeec
Confidence 4457899999999999999999999987777887776544332 33447789999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccc-CCCCCCceeccCCC
Q psy12466 269 EKSLLKPPSGNSPGNDS-GIPSLPRKSDSGIG 299 (680)
Q Consensus 269 EaH~lKN~~s~~~~a~~-~l~~~~r~~LTG~~ 299 (680)
|||||||..++.+..+. ...+++|++|||+.
T Consensus 523 EGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTP 554 (1157)
T KOG0386|consen 523 EGHRMKNAICKLTDTLNTHYRAQRRLLLTGTP 554 (1157)
T ss_pred ccccccchhhHHHHHhhccccchhhhhhcCCh
Confidence 99999999999999888 78899999999953
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-14 Score=159.90 Aligned_cols=145 Identities=22% Similarity=0.260 Sum_probs=105.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|||||.+++..++. +..+++...+|.|||++++.++..+...+. .++|||||+ .|+.||.++
T Consensus 113 ~~~r~~Q~~av~~~l~---------~~~~il~apTGsGKT~i~~~l~~~~~~~~~------~~vLilvpt~eL~~Q~~~~ 177 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK---------NNRRLLNLPTSAGKSLIQYLLSRYYLENYE------GKVLIIVPTTSLVTQMIDD 177 (501)
T ss_pred CCCCHHHHHHHHHHHh---------cCceEEEeCCCCCHHHHHHHHHHHHHhcCC------CeEEEEECcHHHHHHHHHH
Confidence 4699999999977654 256899999999999998777655544431 269999997 888999999
Q ss_pred HHHHhCC--CCe-eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc
Q psy12466 451 FKKWLGL--TRM-CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL 527 (680)
Q Consensus 451 ~~~~~~~--~~v-~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l 527 (680)
+.+|... ..+ .++.+.... ...+|+|+|++.+.+....+. ..+++||+||||++... .....+..+
T Consensus 178 l~~~~~~~~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~~--~~~~il~~~ 246 (501)
T PHA02558 178 FVDYRLFPREAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTGK--SLTSIITKL 246 (501)
T ss_pred HHHhccccccceeEEecCcccC--------CCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccch--hHHHHHHhh
Confidence 9998632 222 222322211 246899999999876443222 36899999999998643 344555666
Q ss_pred -ccceEEEEeCCCCCC
Q psy12466 528 -NIRKRILLSGTPLQN 542 (680)
Q Consensus 528 -~~~~rllLTgTP~~n 542 (680)
+++++++|||||...
T Consensus 247 ~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 247 DNCKFKFGLTGSLRDG 262 (501)
T ss_pred hccceEEEEeccCCCc
Confidence 578899999999654
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-14 Score=128.41 Aligned_cols=136 Identities=26% Similarity=0.313 Sum_probs=100.0
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHHhC-CCCeeEeecCCcchhhhhhh
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~ 476 (680)
++++.+++|+|||.+++.++..+..... .++++|+||...+ .+|.+.+..+.. ...+.++.............
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~-----~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLK-----GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhccc-----CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHh
Confidence 6799999999999999999988876532 3469999998554 666777777775 34555555554444333333
Q ss_pred cCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCcccHHH---HHHHhcccceEEEEeCCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNGKSKLY---ELMTGLNIRKRILLSGTP 539 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~~s~~~---~~l~~l~~~~rllLTgTP 539 (680)
....++++++|+.+.+..... ....++++|+||+|.+.+...... ..........++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 457889999999988765543 345799999999999987765543 334445778899999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-15 Score=156.39 Aligned_cols=108 Identities=24% Similarity=0.287 Sum_probs=83.5
Q ss_pred CCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCc--chhhhcccCCCCEEEEehhHHH-----HHHHhhhcCCCcE
Q psy12466 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN--KAEDYVYSRVSPVLIISYEMLI-----RAYQTIVDTEFDL 264 (680)
Q Consensus 192 ~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~--~~~~~~~~~~~~V~itsYe~l~-----~~~~~l~~~~~~~ 264 (680)
.+++|||||.+++.+|..||.+|++.....++...+.. ..........++|+|+||+++. .....+...+|++
T Consensus 58 ~~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~ 137 (299)
T PF00176_consen 58 EKKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDR 137 (299)
T ss_dssp -S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEE
T ss_pred ccceeEeeccchhhhhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccee
Confidence 34699999999999999999999943333444443333 2223334466889999999999 6667788888999
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 265 LICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 265 vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
||+||+|++||..++.++++..+.+.+||+|||+.
T Consensus 138 vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP 172 (299)
T PF00176_consen 138 VIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTP 172 (299)
T ss_dssp EEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-
T ss_pred EEEecccccccccccccccccccccceEEeecccc
Confidence 99999999999999999999999999999999864
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-14 Score=136.17 Aligned_cols=158 Identities=28% Similarity=0.409 Sum_probs=112.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++++|.+++..+... ..++++..++|+|||..++.++.......+ .+++||++|. .+..||..+
T Consensus 7 ~~~~~~Q~~~~~~~~~~--------~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~~ 73 (201)
T smart00487 7 EPLRPYQKEAIEALLSG--------LRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAEE 73 (201)
T ss_pred CCCCHHHHHHHHHHHcC--------CCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHHH
Confidence 45899999999888641 178999999999999988777766665542 2469999995 778999999
Q ss_pred HHHHhCCCC---eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccC-cccHHH-HH
Q psy12466 451 FKKWLGLTR---MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKN-GKSKLY-EL 523 (680)
Q Consensus 451 ~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn-~~s~~~-~~ 523 (680)
+..+++... ...+.+...............++++++|+.+...... ....+++++|+||+|.+.+ ...... ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 74 LKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 999887633 3333333322222222223349999999999887766 4455788999999999985 333333 33
Q ss_pred HHhc-ccceEEEEeCCCCCC
Q psy12466 524 MTGL-NIRKRILLSGTPLQN 542 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~~n 542 (680)
+..+ ...+++++||||..+
T Consensus 154 ~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHhCCccceEEEEecCCchh
Confidence 3444 578889999999744
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-15 Score=170.93 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=94.4
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchh--h--hc-cc----CCCCEEEEehhHHHHHHHhhhcCC
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--D--YV-YS----RVSPVLIISYEMLIRAYQTIVDTE 261 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~--~--~~-~~----~~~~V~itsYe~l~~~~~~l~~~~ 261 (680)
...++|||+|.|++.+|++||.+|+ ..++.+|+|+-..+.. . +. .. -.++++|||||++..+...|.+++
T Consensus 419 ~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~ 497 (1373)
T KOG0384|consen 419 IHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIP 497 (1373)
T ss_pred ccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCC
Confidence 3457899999999999999999999 6999999998754432 1 11 11 247899999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 262 FDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|.++++||||||||..++.+.++..+...+|+++||+.
T Consensus 498 w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTP 535 (1373)
T KOG0384|consen 498 WRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTP 535 (1373)
T ss_pred cceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCC
Confidence 99999999999999999999999999999999999954
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=165.21 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=109.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..||+||.+|+..+.+.+. .+.++++|.+.+|+|||+++++++..+...+. .+++|+|||. .|+.||.++
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~----~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-----~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIV----EGQREILLAMATGTGKTRTAIALMYRLLKAKR-----FRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHH----hccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-----cCeEEEEecHHHHHHHHHHH
Confidence 4699999999998877642 24578999999999999999999888776543 3579999996 788999999
Q ss_pred HHHHhCCCCee---EeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-------hhccCceEEEEcCcccccCcc---
Q psy12466 451 FKKWLGLTRMC---PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-------IVDTEFDLLICDEGHRLKNGK--- 517 (680)
Q Consensus 451 ~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-------l~~~~~~~vIlDEaH~~kn~~--- 517 (680)
|..+....... ++.. .............|+|+|++++.+.... +.-..|++||+||||+....+
T Consensus 483 F~~~~~~~~~~~~~i~~i---~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDI---KGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred HHhcccccccchhhhhch---hhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 99874321110 1111 1111111234578999999998765421 223468999999999853110
Q ss_pred -------------cHHHHHHHhcccceEEEEeCCCCCCC
Q psy12466 518 -------------SKLYELMTGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 518 -------------s~~~~~l~~l~~~~rllLTgTP~~n~ 543 (680)
...++.+.......+++|||||..+.
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t 598 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT 598 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch
Confidence 12334443333458899999998654
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.6e-13 Score=153.69 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=111.1
Q ss_pred cccCcccHHHHHHHHHhhhhhcc-CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLAS-LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~-~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-.|+||..||+.+.+++..... .+.++|++.+.+|+|||++++.++..+..... ..++|||||. .|..||.+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~-----~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLK-----NPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcC-----CCeEEEEECcHHHHHHHHH
Confidence 44789999999999988643211 13568999999999999999999888775432 3579999997 78899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-hhcc----CceEEEEcCcccccCcccHHHHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-IVDT----EFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-l~~~----~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
+|..+.+... ...................|+|+|.+++.+.... +... ...+||+||||+... ....+.+
T Consensus 312 ~f~~~~~~~~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l 386 (667)
T TIGR00348 312 EFQSLQKDCA---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNL 386 (667)
T ss_pred HHHhhCCCCC---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHH
Confidence 9999865311 1111111122222334578999999999864322 1111 123899999998642 2334455
Q ss_pred H-hcccceEEEEeCCCCCC
Q psy12466 525 T-GLNIRKRILLSGTPLQN 542 (680)
Q Consensus 525 ~-~l~~~~rllLTgTP~~n 542 (680)
. .+....++++||||...
T Consensus 387 ~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFK 405 (667)
T ss_pred HhhCCCCcEEEEeCCCccc
Confidence 3 45778999999999863
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-13 Score=146.69 Aligned_cols=187 Identities=20% Similarity=0.388 Sum_probs=131.7
Q ss_pred cHHHHHHHhhCCCCCCCCCcchhhhccccCCCCCCCccccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEc
Q psy12466 325 SVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILAD 404 (680)
Q Consensus 325 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaD 404 (680)
...+.+.+-|-+ ++ -.+.+++.++++.-. | +..++-.-..++||||...++.|.- ....+.||+.-
T Consensus 262 e~vE~vkkRCie---id--yPlLeEYDFRND~~n-p--dl~idLKPst~iRpYQEksL~KMFG------NgRARSGiIVL 327 (776)
T KOG1123|consen 262 ESVETVKKRCIE---ID--YPLLEEYDFRNDNVN-P--DLDIDLKPSTQIRPYQEKSLSKMFG------NGRARSGIIVL 327 (776)
T ss_pred HHHHHHHHhhhc---cC--chhhhhhccccCCCC-C--CCCcCcCcccccCchHHHHHHHHhC------CCcccCceEEE
Confidence 445566666643 11 123455666654322 2 2223333357899999999999953 34567899999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHHHHHHHHHHhC--CCCeeEeecCCcchhhhhhhcCCCC
Q psy12466 405 EMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSP 481 (680)
Q Consensus 405 emGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~ 481 (680)
.+|.|||+..+..++.+.. ++||+|-+++ +.||..+|..|.. +..++.+....+.+.. ....
T Consensus 328 PCGAGKtLVGvTAa~tikK----------~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~-----~~~g 392 (776)
T KOG1123|consen 328 PCGAGKTLVGVTAACTIKK----------SCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERFP-----SGAG 392 (776)
T ss_pred ecCCCCceeeeeeeeeecc----------cEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccCC-----CCCc
Confidence 9999999999888766544 4899999865 5999999999974 3345555544443322 3578
Q ss_pred EEEEeHHHHH----------HHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 482 VLIISYEMLI----------RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 482 vvI~ty~~l~----------~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
|+|+||+++. +.++.+....|+++|+||+|.+ +..-.-+.+.-+.+..+++||||-+..
T Consensus 393 vvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRE 461 (776)
T KOG1123|consen 393 VVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRE 461 (776)
T ss_pred EEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeec
Confidence 9999999985 4567788899999999999987 333333344445888899999999875
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-13 Score=145.21 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=101.5
Q ss_pred cCCCCCCCCCCchhHHhhcCC------------------------------CCCeEEEEECcccHHHHHHHHHHHhCCCC
Q psy12466 170 EVNPLILPKPIVDHQEKNRRS------------------------------YILRVLIVTPSSLTSNWNDEFKKWLGLTR 219 (680)
Q Consensus 170 ~~~p~~l~~~L~~hQ~~~~~~------------------------------~~~~~LIV~P~sl~~nW~~E~~k~~~~~~ 219 (680)
..+| .+...|+|+|+++... .--+.|||||+||...|.+++++|+|...
T Consensus 190 v~d~-kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAsvrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 190 VMDP-KLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASVRFTWAKALNRFLPSIH 268 (689)
T ss_pred ccCH-HHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHHHhHHHHHHHHHhccccc
Confidence 3456 6778899999991110 01156999999999999999999998533
Q ss_pred e-eEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCCCCCCCCCccccCCC--CCCceecc
Q psy12466 220 M-CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIP--SLPRKSDS 296 (680)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~--~~~r~~LT 296 (680)
- +++.... ...... .....|.|+||+++....+.|....|.+||+||.|.|||.+++.++++..+. +.+-++|+
T Consensus 269 pi~vv~~~~-D~~~~~--~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLS 345 (689)
T KOG1000|consen 269 PIFVVDKSS-DPLPDV--CTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLS 345 (689)
T ss_pred ceEEEeccc-CCcccc--ccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEec
Confidence 3 2222222 111111 1334699999999999999999999999999999999999999999988865 44578888
Q ss_pred CCCCCCCCCCchhhhH
Q psy12466 297 GIGSLPCKRPLEESTA 312 (680)
Q Consensus 297 G~~~~~~~~~~~e~~~ 312 (680)
|+. .-+||.|-++.
T Consensus 346 GTP--avSRP~elytq 359 (689)
T KOG1000|consen 346 GTP--AVSRPSELYTQ 359 (689)
T ss_pred CCc--ccCCchhhhhh
Confidence 765 45788876654
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-13 Score=159.98 Aligned_cols=110 Identities=19% Similarity=0.200 Sum_probs=79.4
Q ss_pred CCCCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hcccCCCCEEEEehhHHHHHH---HhhhcCCCc
Q psy12466 189 RSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAY---QTIVDTEFD 263 (680)
Q Consensus 189 ~~~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~V~itsYe~l~~~~---~~l~~~~~~ 263 (680)
.+.++++|||||+||+.||+.|+.+|++ ..+.++.......... ......++++|+||+++++.. ..+....||
T Consensus 196 ~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wd 274 (956)
T PRK04914 196 TGRAERVLILVPETLQHQWLVEMLRRFN-LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWD 274 (956)
T ss_pred cCCCCcEEEEcCHHHHHHHHHHHHHHhC-CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCC
Confidence 3457899999999999999999999986 4555554332111100 011134689999999998733 557778999
Q ss_pred EEEEcCCCCCCCCC---CCCCccccCC--CCCCceeccCCC
Q psy12466 264 LLICDEKSLLKPPS---GNSPGNDSGI--PSLPRKSDSGIG 299 (680)
Q Consensus 264 ~vI~DEaH~lKN~~---s~~~~a~~~l--~~~~r~~LTG~~ 299 (680)
+||+||||+|||.. ++.++.+..+ ++.++++|||+.
T Consensus 275 lvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP 315 (956)
T PRK04914 275 LLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATP 315 (956)
T ss_pred EEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCc
Confidence 99999999999754 4446777777 456799999854
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-12 Score=148.37 Aligned_cols=175 Identities=19% Similarity=0.192 Sum_probs=129.5
Q ss_pred ccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-ch
Q psy12466 365 TVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SL 443 (680)
Q Consensus 365 ~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sl 443 (680)
..|......+|+||..|++...+.+. .+....+|++.+|+|||.+|++++..+...+. .+++|.++.. +|
T Consensus 157 ~~~~~s~i~~RyyQ~~AI~rv~Eaf~----~g~~raLlvMATGTGKTrTAiaii~rL~r~~~-----~KRVLFLaDR~~L 227 (875)
T COG4096 157 YIDIDSAIGPRYYQIIAIRRVIEAFS----KGQNRALLVMATGTGKTRTAIAIIDRLIKSGW-----VKRVLFLADRNAL 227 (875)
T ss_pred cCcccccccchHHHHHHHHHHHHHHh----cCCceEEEEEecCCCcceeHHHHHHHHHhcch-----hheeeEEechHHH
Confidence 34444567799999999999998753 34566999999999999999999999998764 7899999995 88
Q ss_pred HHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh-------hccCceEEEEcCcccccCc
Q psy12466 444 TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI-------VDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 444 l~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l-------~~~~~~~vIlDEaH~~kn~ 516 (680)
+.|=..+|.+|.|....+...... .....+.|+++||+++......- .-..||+||+||||+-
T Consensus 228 v~QA~~af~~~~P~~~~~n~i~~~-------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg--- 297 (875)
T COG4096 228 VDQAYGAFEDFLPFGTKMNKIEDK-------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG--- 297 (875)
T ss_pred HHHHHHHHHHhCCCccceeeeecc-------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---
Confidence 899999999999986655433221 12225789999999998766543 2235999999999973
Q ss_pred ccHHHHHHHhcccceEEEEeCCCCC-----------CCHHHHHHHHhhhCCCC
Q psy12466 517 KSKLYELMTGLNIRKRILLSGTPLQ-----------NDLQEFFYLNDFANPGV 558 (680)
Q Consensus 517 ~s~~~~~l~~l~~~~rllLTgTP~~-----------n~~~el~sll~fl~p~~ 558 (680)
..+.++.+...-...+++|||||-. ..+...|++=.-+..++
T Consensus 298 i~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGf 350 (875)
T COG4096 298 IYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGF 350 (875)
T ss_pred HHhhhHHHHHHHHHHHHhhccCcccccccccccccCCCcceeecHHHHhhccc
Confidence 3334445555556677788999966 44555566554444333
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-11 Score=128.74 Aligned_cols=162 Identities=18% Similarity=0.196 Sum_probs=116.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+-|.||..-+.-.+. ++++++-.+|||||+.|+.++.......+ +++|+++|+ .|+.|-.+-+
T Consensus 15 e~R~YQ~~i~a~al~----------~NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 15 EPRLYQLNIAAKALF----------KNTLVVLPTGLGKTFIAAMVIANRLRWFG------GKVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred cHHHHHHHHHHHHhh----------cCeEEEecCCccHHHHHHHHHHHHHHhcC------CeEEEecCCchHHHHHHHHH
Confidence 467899877766544 58999999999999999999987776654 359999997 8889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcccHHHHH--HH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKSKLYEL--MT 525 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s~~~~~--l~ 525 (680)
.++++. ..+..+.|..+...+...+ ....|+++|.+.+.+++.. +.-..+.++|+||||+.-+..+=.+-+ ..
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 999854 6677777776655444333 3678999999999887643 334578999999999975543322211 11
Q ss_pred hc-ccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 526 GL-NIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
+. +..+.++|||||= ++...+...++
T Consensus 158 ~~~k~~~ilgLTASPG-s~~ekI~eV~~ 184 (542)
T COG1111 158 RSAKNPLILGLTASPG-SDLEKIQEVVE 184 (542)
T ss_pred HhccCceEEEEecCCC-CCHHHHHHHHH
Confidence 22 4447899999993 33444444333
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.4e-11 Score=117.01 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=105.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.++++|.+++..+.+ +++.++..++|.|||... +.++..+...... ...++|||||. .++.|+.+.
T Consensus 21 ~~~~~Q~~~~~~~~~---------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~---~~~~viii~p~~~L~~q~~~~ 88 (203)
T cd00268 21 KPTPIQARAIPPLLS---------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKK---DGPQALILAPTRELALQIAEV 88 (203)
T ss_pred CCCHHHHHHHHHHhc---------CCcEEEECCCCCcHHHHHHHHHHHHHHhhccc---CCceEEEEcCCHHHHHHHHHH
Confidence 478999999987753 478999999999999985 4445554443111 12469999997 788999999
Q ss_pred HHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCcc-cHHHH-HH
Q psy12466 451 FKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNGK-SKLYE-LM 524 (680)
Q Consensus 451 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~~-s~~~~-~l 524 (680)
+..+.. ...+..+.+...............+|+|+|.+.+......- .-..++++|+||+|.+.+.. ..... .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~ 168 (203)
T cd00268 89 ARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREIL 168 (203)
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHH
Confidence 999875 34445555554443333333357889999998876644321 11357899999999976442 22222 23
Q ss_pred Hhcc-cceEEEEeCCCC
Q psy12466 525 TGLN-IRKRILLSGTPL 540 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~ 540 (680)
..+. ....+++||||-
T Consensus 169 ~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 169 KLLPKDRQTLLFSATMP 185 (203)
T ss_pred HhCCcccEEEEEeccCC
Confidence 3343 466799999997
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-11 Score=113.24 Aligned_cols=156 Identities=24% Similarity=0.373 Sum_probs=108.1
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
|+|.+++.-+.+ ++..++...+|.|||..++..+......+. ...+||+||. .++.|-.+++.++
T Consensus 2 ~~Q~~~~~~i~~---------~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----~~~~lii~P~~~l~~q~~~~~~~~ 67 (169)
T PF00270_consen 2 PLQQEAIEAIIS---------GKNVLISAPTGSGKTLAYILPALNRLQEGK-----DARVLIIVPTRALAEQQFERLRKF 67 (169)
T ss_dssp HHHHHHHHHHHT---------TSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----SSEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---------CCCEEEECCCCCccHHHHHHHHHhhhccCC-----CceEEEEeeccccccccccccccc
Confidence 689999987752 366999999999999998765554444332 1269999997 7889999999999
Q ss_pred hCC--CCeeEeecCCcchhhh-hhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHHHhc
Q psy12466 455 LGL--TRMCPYHVNQKNKAED-YVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELMTGL 527 (680)
Q Consensus 455 ~~~--~~v~~~~~~~~~~~~~-~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~~l 527 (680)
+.. .++..+++........ .......+|+|+|++.+...... ..-...++||+||+|.+... .......+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 68 FSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp TTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 875 4555555544433122 12235689999999999887764 11234899999999998653 22233333333
Q ss_pred ---ccceEEEEeCCCCCCCHHH
Q psy12466 528 ---NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 528 ---~~~~rllLTgTP~~n~~~e 546 (680)
.....+++||||- .++.+
T Consensus 148 ~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 148 KRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp HTTTTSEEEEEESSST-HHHHH
T ss_pred cCCCCCcEEEEeeCCC-hhHhh
Confidence 3466899999997 55543
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-12 Score=144.74 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=84.8
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
..+..|||||+|++.+|..|+.+-.....+.+++..+ +..+......++||||||.++.. ..+..+.|-+||+|||
T Consensus 188 ~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea 263 (674)
T KOG1001|consen 188 EFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEA 263 (674)
T ss_pred ccCceeEecchHHHHHHHHHHhccCCccceEEEEecc--cccccchhcCCceEEeeHHHhhc--ccccceeEEEEEeccc
Confidence 5778999999999999999997776544554444444 22222333667899999999975 4455688999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|.|||++++.++++..+.+.+||+|||+.
T Consensus 264 ~~ikn~~tq~~~a~~~L~a~~RWcLtgtP 292 (674)
T KOG1001|consen 264 HTIKNKDTQIFKAVCQLDAKYRWCLTGTP 292 (674)
T ss_pred cccCCcchHhhhhheeeccceeeeecCCh
Confidence 99999999999999999999999999843
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=132.45 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=122.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
-.||+||.+-+.-.+ +.++|+|-.+|+|||+.|+.++..+.+..+. +++++.+|+ .|+.|-...
T Consensus 61 ~~lR~YQ~eivq~AL----------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----~KiVF~aP~~pLv~QQ~a~ 125 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL----------GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----GKVVFLAPTRPLVNQQIAC 125 (746)
T ss_pred ccccHHHHHHhHHhh----------cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----ceEEEeeCCchHHHHHHHH
Confidence 369999999886653 5889999999999999999999988888763 579999997 677777788
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccC---ceEEEEcCcccccCcccHHHHHH---
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTE---FDLLICDEGHRLKNGKSKLYELM--- 524 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~---~~~vIlDEaH~~kn~~s~~~~~l--- 524 (680)
+..++-.-.+....++...+..........+|+|+|.+.+..++....... |.++|+||||+... ++.....+
T Consensus 126 ~~~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 126 FSIYLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSK-NHPYNNIMREY 204 (746)
T ss_pred HhhccCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccc-cccHHHHHHHH
Confidence 888764444555555433333333344567899999999998876655444 99999999999632 22233333
Q ss_pred Hhc--ccceEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy12466 525 TGL--NIRKRILLSGTPLQNDLQEFFYLNDFANPG 557 (680)
Q Consensus 525 ~~l--~~~~rllLTgTP~~n~~~el~sll~fl~p~ 557 (680)
..+ ...+.|+|||||= ++.....+.+.=|.-.
T Consensus 205 l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as 238 (746)
T KOG0354|consen 205 LDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS 238 (746)
T ss_pred HHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee
Confidence 333 3347899999998 7777776666655444
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-12 Score=152.64 Aligned_cols=108 Identities=29% Similarity=0.365 Sum_probs=93.6
Q ss_pred CCeEEEEECcccHHHHHHHHHHHhCCCC-eeEEeecCCc---chhhhccc------CCCCEEEEehhHHHH---HHHhhh
Q psy12466 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKN---KAEDYVYS------RVSPVLIISYEMLIR---AYQTIV 258 (680)
Q Consensus 192 ~~~~LIV~P~sl~~nW~~E~~k~~~~~~-~~~~~~~~~~---~~~~~~~~------~~~~V~itsYe~l~~---~~~~l~ 258 (680)
.+++|||||+|++.||.+||.+|.|..+ +..++|.... +....... ..++|++|||+.++. ....+.
T Consensus 390 ~~~~liv~p~s~~~nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~ 469 (866)
T COG0553 390 LGPALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLK 469 (866)
T ss_pred CCCeEEEecHHHHHHHHHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHh
Confidence 4689999999999999999999999888 8888887642 12221111 127899999999999 888999
Q ss_pred cCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
...|+.+|+||||+|||..++.+++++.+++.+|++|||+.
T Consensus 470 ~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTP 510 (866)
T COG0553 470 KIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTP 510 (866)
T ss_pred hceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCCh
Confidence 99999999999999999999999999999999999999976
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=135.10 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=109.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
-+|.++|++++..+.... ......+.+|..++|+|||+.++..+......+. .++|++|+ .|..|+.++
T Consensus 234 f~lt~~Q~~ai~~I~~~~---~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~-------qvlilaPT~~LA~Q~~~~ 303 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDL---KSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGY-------QVALMAPTEILAEQHYNS 303 (630)
T ss_pred CCCCHHHHHHHHHHHHHh---ccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCC-------cEEEECCHHHHHHHHHHH
Confidence 368999999999887642 2223446799999999999987655544444432 48999997 666999999
Q ss_pred HHHHhCC--CCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
+.++++. .++.++++....... .....+..+|+|+|+..+.... .-.+.++||+||+|++.- .+.....
T Consensus 304 ~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~--~qr~~l~ 378 (630)
T TIGR00643 304 LRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGV--EQRKKLR 378 (630)
T ss_pred HHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhccH--HHHHHHH
Confidence 9999874 566777766543322 1223456799999998876432 224578999999999732 2222222
Q ss_pred Hhcc---cceEEEEeCCCCCCCH
Q psy12466 525 TGLN---IRKRILLSGTPLQNDL 544 (680)
Q Consensus 525 ~~l~---~~~rllLTgTP~~n~~ 544 (680)
.... ..+.++|||||+...+
T Consensus 379 ~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 379 EKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred HhcccCCCCCEEEEeCCCCcHHH
Confidence 2233 5678999999987544
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=110.87 Aligned_cols=245 Identities=20% Similarity=0.225 Sum_probs=148.0
Q ss_pred cccCccc--ccccCcccHHHHHHHHHhhhh-hccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 364 VTVDGFL--SRVLKPHQRQGVSFLYERVCD-LASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 364 ~~~p~~l--~~~LrpyQ~~gv~~l~~~~~~-~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
..+|..+ ...|=.-|.++|-+..++... +......|.+|+|.+|.||-.|+.++|......+.. +.+-|-+.
T Consensus 26 ~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-----r~vwvS~s 100 (303)
T PF13872_consen 26 LHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-----RAVWVSVS 100 (303)
T ss_pred cCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-----ceEEEECC
Confidence 3455532 356788999999999887432 223356789999999999999999999887777641 23444455
Q ss_pred cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH-------hhhc------cCc-eEEE
Q psy12466 441 SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-------TIVD------TEF-DLLI 506 (680)
Q Consensus 441 ~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~-------~l~~------~~~-~~vI 506 (680)
..|...-.+++...-.. .+.+.....-..... ..-...|+++||..+..... .+.+ ..| .+||
T Consensus 101 ~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgviv 177 (303)
T PF13872_consen 101 NDLKYDAERDLRDIGAD-NIPVHPLNKFKYGDI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIV 177 (303)
T ss_pred hhhhhHHHHHHHHhCCC-cccceechhhccCcC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEE
Confidence 67777777777764322 222222221111111 11246799999999976532 1111 123 4899
Q ss_pred EcCcccccCccc------HHHHHHHhc----ccceEEEEeCCCCCCCHHHHHHHHhh--hCCC-CCCCHHHHHHHhhhhh
Q psy12466 507 CDEGHRLKNGKS------KLYELMTGL----NIRKRILLSGTPLQNDLQEFFYLNDF--ANPG-VLGSLREFRKNFEEPI 573 (680)
Q Consensus 507 lDEaH~~kn~~s------~~~~~l~~l----~~~~rllLTgTP~~n~~~el~sll~f--l~p~-~l~~~~~F~~~f~~~i 573 (680)
+||||+.+|..+ +...++..| ...+.+..|||... .+.+|-.+-++ -.++ .|.+..+|......
T Consensus 178 fDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas-ep~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~-- 254 (303)
T PF13872_consen 178 FDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS-EPRNMAYMSRLGLWGPGTPFPDFDDFLEAMEK-- 254 (303)
T ss_pred eccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC-CCceeeeeeeccccCCCCCCCCHHHHHHHHHh--
Confidence 999999999755 455565544 45578999999984 34444322221 1221 35566666555443
Q ss_pred hccCCCCChHHHHHhhhhHHHHHHHH--hccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHH
Q psy12466 574 LESRSPNSTEAQKSLGELRSSQLAKR--TAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLR 638 (680)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~L~~~--l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~ 638 (680)
++. ...+.+..- -+...++|.-+ +-.-+..++.++|+++|.++|+.
T Consensus 255 --gGv------------~amE~vA~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 255 --GGV------------GAMEMVAMDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred --cCc------------hHHHHHHHHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 211 111111111 23445555442 44456788999999999999975
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-10 Score=130.74 Aligned_cols=157 Identities=19% Similarity=0.243 Sum_probs=109.3
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-+|.++|.+++.-+..- .........+|..++|+|||+.++..+......+ ..+||++|+ .|..|..+
T Consensus 259 ~f~lt~~Q~~ai~~I~~d---~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-------~q~lilaPT~~LA~Q~~~ 328 (681)
T PRK10917 259 PFELTGAQKRVVAEILAD---LASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-------YQAALMAPTEILAEQHYE 328 (681)
T ss_pred CCCCCHHHHHHHHHHHHh---hhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEeccHHHHHHHHH
Confidence 346899999999988763 2223345689999999999999876654444443 259999998 67799999
Q ss_pred HHHHHhCC--CCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH
Q psy12466 450 EFKKWLGL--TRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL 523 (680)
Q Consensus 450 E~~~~~~~--~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~ 523 (680)
.+.++++. .++.++++....... .....+..+|+|+|+..+.... .-.+.++||+||+|++. ......
T Consensus 329 ~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg---~~qr~~ 402 (681)
T PRK10917 329 NLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFG---VEQRLA 402 (681)
T ss_pred HHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc---hhcccceEEEechhhhh---HHHHHH
Confidence 99999875 566667776553222 1223456899999998875422 12357899999999973 222233
Q ss_pred HHhc-ccceEEEEeCCCCCCC
Q psy12466 524 MTGL-NIRKRILLSGTPLQND 543 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~~n~ 543 (680)
+... ...+.++|||||+...
T Consensus 403 l~~~~~~~~iL~~SATp~prt 423 (681)
T PRK10917 403 LREKGENPHVLVMTATPIPRT 423 (681)
T ss_pred HHhcCCCCCEEEEeCCCCHHH
Confidence 3333 3567899999997654
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=121.42 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=106.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHH-HHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI-WTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali-~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+.++|.+++..+++ +...++...+|.|||...+..+ ..+.. .+.......++||++|. .|..|+.+.
T Consensus 23 ~p~~iQ~~ai~~~~~---------g~d~l~~apTGsGKT~~~~lp~l~~l~~-~~~~~~~~~~~lil~Pt~eLa~Q~~~~ 92 (434)
T PRK11192 23 RPTAIQAEAIPPALD---------GRDVLGSAPTGTGKTAAFLLPALQHLLD-FPRRKSGPPRILILTPTRELAMQVADQ 92 (434)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHhh-ccccCCCCceEEEECCcHHHHHHHHHH
Confidence 467899999988753 3678999999999999865443 33332 11111123479999997 677999988
Q ss_pred HHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
+..+... .++..+.+...............+|+|+|.+.+...+.. +.-..+++||+||||++-... ......+
T Consensus 93 ~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~ 172 (434)
T PRK11192 93 ARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIA 172 (434)
T ss_pred HHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHH
Confidence 8887654 345555554433333223345678999999988765432 223457889999999985432 2222222
Q ss_pred Hhcc-cceEEEEeCCCCCCCHHHHHH
Q psy12466 525 TGLN-IRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~~n~~~el~s 549 (680)
..+. ....+++|||+-...+.++..
T Consensus 173 ~~~~~~~q~~~~SAT~~~~~~~~~~~ 198 (434)
T PRK11192 173 AETRWRKQTLLFSATLEGDAVQDFAE 198 (434)
T ss_pred HhCccccEEEEEEeecCHHHHHHHHH
Confidence 2232 234599999986554555443
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-10 Score=132.66 Aligned_cols=100 Identities=15% Similarity=0.346 Sum_probs=73.3
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHH----------HHhhhc
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA----------YQTIVD 259 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~----------~~~l~~ 259 (680)
+++|||||.++ +.||.+||.+|+. ...+..+.++.+.. .....+|+|+||.++... .+.+..
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~ 373 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN 373 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhcc
Confidence 58999999886 8899999999974 23444554433221 123478999999998532 344556
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 260 TEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 260 ~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
..|++||+||+|++.++ ...+.+..+.+.+|+.|||+.
T Consensus 374 ~~~gLII~DEvH~lpA~--~fr~il~~l~a~~RLGLTATP 411 (732)
T TIGR00603 374 REWGLILLDEVHVVPAA--MFRRVLTIVQAHCKLGLTATL 411 (732)
T ss_pred ccCCEEEEEccccccHH--HHHHHHHhcCcCcEEEEeecC
Confidence 78999999999999643 344466778899999999764
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-10 Score=126.47 Aligned_cols=159 Identities=26% Similarity=0.325 Sum_probs=101.3
Q ss_pred cCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH
Q psy12466 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT 444 (680)
Q Consensus 366 ~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll 444 (680)
+|..-..++||||.+|+....+.+ ..+.+|=|-..+|+|||++++-+...+... ++|.++|+ +|+
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F-----~~n~RGkLIMAcGTGKTfTsLkisEala~~---------~iL~LvPSIsLL 219 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGF-----SDNDRGKLIMACGTGKTFTSLKISEALAAA---------RILFLVPSISLL 219 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhc-----ccccCCcEEEecCCCccchHHHHHHHHhhh---------heEeecchHHHH
Confidence 444445789999999999888753 235667778889999999999999888774 48999998 788
Q ss_pred HHHHHHHHHHhCCCCeeEeecCCcc--------------------hhhh-------hhhcCCCCEEEEeHHHHHHHHHh-
Q psy12466 445 SNWNDEFKKWLGLTRMCPYHVNQKN--------------------KAED-------YVYSRVSPVLIISYEMLIRAYQT- 496 (680)
Q Consensus 445 ~qW~~E~~~~~~~~~v~~~~~~~~~--------------------~~~~-------~~~~~~~~vvI~ty~~l~~~~~~- 496 (680)
.|-.+|...-. .+.+......+.. +... ......--||++||+.+-.....
T Consensus 220 sQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ 298 (1518)
T COG4889 220 SQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ 298 (1518)
T ss_pred HHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH
Confidence 77655543211 1111111111110 0000 11112234999999998764433
Q ss_pred -hhccCceEEEEcCcccccCc------ccHHHHH--HHhcccceEEEEeCCC
Q psy12466 497 -IVDTEFDLLICDEGHRLKNG------KSKLYEL--MTGLNIRKRILLSGTP 539 (680)
Q Consensus 497 -l~~~~~~~vIlDEaH~~kn~------~s~~~~~--l~~l~~~~rllLTgTP 539 (680)
..-..||+|||||||+-.+. .+..++. -..+++..|+.|||||
T Consensus 299 e~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 299 EAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred HcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 33457999999999986432 1222221 1234777899999999
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=121.29 Aligned_cols=164 Identities=16% Similarity=0.131 Sum_probs=108.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..+||+|.+++..+++ ++.+++...+|.|||+..+.-+ +... +.+|||+|. .|+.++.+.
T Consensus 10 ~~~r~~Q~~ai~~~l~---------g~dvlv~apTGsGKTl~y~lp~--l~~~--------~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL---------GRDCFVVMPTGGGKSLCYQLPA--LCSD--------GITLVISPLISLMEDQVLQ 70 (470)
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEcCCCCcHhHHHHHHH--HHcC--------CcEEEEecHHHHHHHHHHH
Confidence 3589999999988754 3579999999999998653322 2221 248999997 788999888
Q ss_pred HHHHhCCCCeeEeecCCcchh----hhhhhcCCCCEEEEeHHHHHHH---HHhh-hccCceEEEEcCcccccCccc---H
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRA---YQTI-VDTEFDLLICDEGHRLKNGKS---K 519 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~---~~~l-~~~~~~~vIlDEaH~~kn~~s---~ 519 (680)
+... ...+..+.+...... ......+..+++++|.+.+... ...+ ...++.+||+||||.+..... .
T Consensus 71 l~~~--gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 71 LKAS--GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred HHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 8764 234444444433221 1122345678999999987542 2333 445789999999999854321 1
Q ss_pred HHHHH----HhcccceEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy12466 520 LYELM----TGLNIRKRILLSGTPLQNDLQEFFYLNDFANP 556 (680)
Q Consensus 520 ~~~~l----~~l~~~~rllLTgTP~~n~~~el~sll~fl~p 556 (680)
.+..+ ..+.....++|||||-.....++...+.+-.|
T Consensus 149 ~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~ 189 (470)
T TIGR00614 149 DYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNP 189 (470)
T ss_pred HHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCC
Confidence 22222 23345668999999988777777776655443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=119.58 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=104.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+.|+|.+++..+++ +...|+..++|+|||...+. ++..+.. ... ...+||+||+ .|..||.++
T Consensus 26 ~~t~iQ~~ai~~~l~---------g~dvi~~a~TGsGKT~a~~lpil~~l~~-~~~----~~~~lil~PtreLa~Q~~~~ 91 (460)
T PRK11776 26 EMTPIQAQSLPAILA---------GKDVIAQAKTGSGKTAAFGLGLLQKLDV-KRF----RVQALVLCPTRELADQVAKE 91 (460)
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEECCCCCcHHHHHHHHHHHHhhh-ccC----CceEEEEeCCHHHHHHHHHH
Confidence 477999999988753 46799999999999987543 4443322 211 2258999997 788999999
Q ss_pred HHHHh---CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 451 FKKWL---GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 451 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
+.++. +..++..+.|...............+|+|+|.+.+...... +.-..+++||+||||++-+.. ......
T Consensus 92 ~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i 171 (460)
T PRK11776 92 IRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAI 171 (460)
T ss_pred HHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHH
Confidence 98875 34566666665444333333345679999999998765542 222357899999999875432 223333
Q ss_pred HHhcc-cceEEEEeCCCC
Q psy12466 524 MTGLN-IRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP~ 540 (680)
+..+. ....+++|||+-
T Consensus 172 ~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 172 IRQAPARRQTLLFSATYP 189 (460)
T ss_pred HHhCCcccEEEEEEecCc
Confidence 44443 345699999984
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-09 Score=117.01 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=103.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC-CCCccceEEEEecc-chHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY-GMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~-~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.+.|+|.+++..+++ +...|+...+|+|||+..+. ++..+...... ......++|||||. .|..||.+
T Consensus 23 ~pt~iQ~~ai~~il~---------g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 93 (456)
T PRK10590 23 EPTPIQQQAIPAVLE---------GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93 (456)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHH
Confidence 477999999988753 46799999999999998654 34444332111 00111358999997 78899999
Q ss_pred HHHHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 450 EFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 450 E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
++..+..... +....+...............+|+|+|.+.+...... +.-...++||+||||++-... ......
T Consensus 94 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~i 173 (456)
T PRK10590 94 NVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRV 173 (456)
T ss_pred HHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHH
Confidence 9999876543 3333333332222223345679999999998664432 222468899999999985433 222333
Q ss_pred HHhccc-ceEEEEeCCCC
Q psy12466 524 MTGLNI-RKRILLSGTPL 540 (680)
Q Consensus 524 l~~l~~-~~rllLTgTP~ 540 (680)
+..+.. ...+++|||+-
T Consensus 174 l~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 174 LAKLPAKRQNLLFSATFS 191 (456)
T ss_pred HHhCCccCeEEEEeCCCc
Confidence 444433 34799999974
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-09 Score=128.69 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=105.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
-.+.+.|.+++.-+..- +....+...+++.++|.|||.+++-.+......+ .++||+||+ .|..|..+.
T Consensus 599 ~~~T~~Q~~aI~~il~d---~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g-------~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 599 FETTPDQAQAINAVLSD---MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENH-------KQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred CCCCHHHHHHHHHHHHH---hhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcC-------CeEEEEeCcHHHHHHHHHH
Confidence 35788999999887653 2233456789999999999998764443333332 359999998 566999999
Q ss_pred HHHHhCCC--CeeEeecCCcchhhhh----hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 451 FKKWLGLT--RMCPYHVNQKNKAEDY----VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~~--~v~~~~~~~~~~~~~~----~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
|.+++... ++..+.+......... ...+..+|+|+|++.+... +.-.+++++|+||+|++.. .....+
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~l 742 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERI 742 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHH
Confidence 98876543 4444444433222211 1234678999999876432 2224688999999999832 233445
Q ss_pred Hhc-ccceEEEEeCCCCCCCH
Q psy12466 525 TGL-NIRKRILLSGTPLQNDL 544 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~~n~~ 544 (680)
..+ .....+++||||+...+
T Consensus 743 k~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 743 KAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred HhcCCCCcEEEEcCCCCHHHH
Confidence 555 34578999999987654
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.2e-09 Score=122.50 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=105.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
+|+|+|.+++..++. .+.+++++..+|.|||+.+.. ++..+. .+ +++|+|+|. +|+.|+.++
T Consensus 23 ~l~p~Q~~ai~~~~~--------~g~nvlv~APTGSGKTlia~lail~~l~-~~-------~kal~i~P~raLa~q~~~~ 86 (737)
T PRK02362 23 ELYPPQAEAVEAGLL--------DGKNLLAAIPTASGKTLIAELAMLKAIA-RG-------GKALYIVPLRALASEKFEE 86 (737)
T ss_pred cCCHHHHHHHHHHHh--------CCCcEEEECCCcchHHHHHHHHHHHHHh-cC-------CcEEEEeChHHHHHHHHHH
Confidence 588999999976432 357899999999999999854 444443 22 359999996 888999999
Q ss_pred HHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcc-cHHHH-HHH
Q psy12466 451 FKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGK-SKLYE-LMT 525 (680)
Q Consensus 451 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~-s~~~~-~l~ 525 (680)
+.++.+ +.++..+.|....... .....+|+|+|++.+......-. -...++||+||+|.+.+.. ..... .+.
T Consensus 87 ~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~ 163 (737)
T PRK02362 87 FERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLA 163 (737)
T ss_pred HHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHH
Confidence 998754 3556666665432221 22457899999998865443211 1257999999999986532 12222 222
Q ss_pred hc----ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 526 GL----NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 526 ~l----~~~~rllLTgTP~~n~~~el~sll 551 (680)
++ ...+.++||||.- +..++...+
T Consensus 164 rl~~~~~~~qii~lSATl~--n~~~la~wl 191 (737)
T PRK02362 164 KLRRLNPDLQVVALSATIG--NADELADWL 191 (737)
T ss_pred HHHhcCCCCcEEEEcccCC--CHHHHHHHh
Confidence 22 3446799999974 356655433
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.7e-09 Score=124.74 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=105.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+.|.|..++..+.+- +....+...++..++|.|||..++..+......+ ..++|+||+ .|..|..+.|
T Consensus 451 ~~T~~Q~~aI~~I~~d---~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-------~qvlvLvPT~~LA~Q~~~~f 520 (926)
T TIGR00580 451 EETPDQLKAIEEIKAD---MESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-------KQVAVLVPTTLLAQQHFETF 520 (926)
T ss_pred CCCHHHHHHHHHHHhh---hcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-------CeEEEEeCcHHHHHHHHHHH
Confidence 4789999999988763 2223345789999999999998765544433333 259999998 6669999999
Q ss_pred HHHhCCCC--eeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 452 KKWLGLTR--MCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~~--v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
.++++... +..+.+....... .....+..+|+|+|+..+.+. +.-.+..+||+||+|++.- .....+.
T Consensus 521 ~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfgv---~~~~~L~ 594 (926)
T TIGR00580 521 KERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFGV---KQKEKLK 594 (926)
T ss_pred HHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccch---hHHHHHH
Confidence 99886544 3444443332211 112234678999999765422 2223578999999999732 3334455
Q ss_pred hc-ccceEEEEeCCCCCCCHH
Q psy12466 526 GL-NIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n~~~ 545 (680)
.+ .....++|||||+...+.
T Consensus 595 ~~~~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 595 ELRTSVDVLTLSATPIPRTLH 615 (926)
T ss_pred hcCCCCCEEEEecCCCHHHHH
Confidence 55 345789999999875443
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=119.67 Aligned_cols=160 Identities=19% Similarity=0.286 Sum_probs=117.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E 450 (680)
-+|-..|+.+++-+.. ++.....-.-+|--|+|+|||+.|+..+......|. -+.+.+|+.++ .|-.+.
T Consensus 261 F~LT~aQ~~vi~EI~~---Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~-------Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 261 FKLTNAQKRVIKEILA---DLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY-------QAALMAPTEILAEQHYES 330 (677)
T ss_pred CCccHHHHHHHHHHHh---hhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC-------eeEEeccHHHHHHHHHHH
Confidence 4577889999987754 344455566788889999999998777766666654 27899999766 899999
Q ss_pred HHHHhCC--CCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
+.+|++. .+|.+..|+-+...+ .....+..+++|-|+..+..... -.+..+||+||=|++. ..++.+..
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFG--V~QR~~L~ 405 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFG--VHQRLALR 405 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee---ecceeEEEEecccccc--HHHHHHHH
Confidence 9999974 555666665544332 23445778999999998865443 3467899999999983 33433333
Q ss_pred Hhcc-cceEEEEeCCCCCCCHHH
Q psy12466 525 TGLN-IRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~~n~~~e 546 (680)
.+-. .++.+.|||||+..++.=
T Consensus 406 ~KG~~~Ph~LvMTATPIPRTLAl 428 (677)
T COG1200 406 EKGEQNPHVLVMTATPIPRTLAL 428 (677)
T ss_pred HhCCCCCcEEEEeCCCchHHHHH
Confidence 3334 589999999999987753
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=121.23 Aligned_cols=160 Identities=22% Similarity=0.216 Sum_probs=107.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..|+|+|.+++.-.+ ..+.+.+++..+|.|||..+ ++++..+...+ +++|+|+|. .|+.|+.+
T Consensus 22 ~~l~~~Q~~ai~~~~--------~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~-------~~~l~l~P~~aLa~q~~~ 86 (720)
T PRK00254 22 EELYPPQAEALKSGV--------LEGKNLVLAIPTASGKTLVAEIVMVNKLLREG-------GKAVYLVPLKALAEEKYR 86 (720)
T ss_pred CCCCHHHHHHHHHHH--------hCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC-------CeEEEEeChHHHHHHHHH
Confidence 358899999996432 13578999999999999998 44555444322 369999997 78899999
Q ss_pred HHHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCc--ccHHHHHH
Q psy12466 450 EFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNG--KSKLYELM 524 (680)
Q Consensus 450 E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~--~s~~~~~l 524 (680)
++.+|.. +.++..++|...... ......+|+|+|++.+......- .-.+.++||+||+|.+... .......+
T Consensus 87 ~~~~~~~~g~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il 163 (720)
T PRK00254 87 EFKDWEKLGLRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMIL 163 (720)
T ss_pred HHHHHhhcCCEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHH
Confidence 9988643 345555665543322 12245789999999886543311 0135789999999998543 33333344
Q ss_pred Hhc-ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 525 TGL-NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~~n~~~el~sll 551 (680)
..+ ...+.++||||.- +..++...+
T Consensus 164 ~~l~~~~qiI~lSATl~--n~~~la~wl 189 (720)
T PRK00254 164 THMLGRAQILGLSATVG--NAEELAEWL 189 (720)
T ss_pred HhcCcCCcEEEEEccCC--CHHHHHHHh
Confidence 444 3456799999984 356665433
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.1e-09 Score=113.47 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=100.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+.|+|.+++..+++ +...++..++|+|||+.++..+........ ...++|||+|. .|..|+.+.+
T Consensus 50 ~~~~~Q~~ai~~i~~---------~~d~ii~apTGsGKT~~~~l~~l~~~~~~~----~~~~~lil~Pt~~L~~Q~~~~~ 116 (401)
T PTZ00424 50 KPSAIQQRGIKPILD---------GYDTIGQAQSGTGKTATFVIAALQLIDYDL----NACQALILAPTRELAQQIQKVV 116 (401)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHhcCCC----CCceEEEECCCHHHHHHHHHHH
Confidence 578999999988754 367899999999999886544333332211 12469999997 6778888888
Q ss_pred HHHhCCCCeeE--eecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHHH
Q psy12466 452 KKWLGLTRMCP--YHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~ 525 (680)
..+.....+.. ..+...............+|+|+|.+.+...... +.-.++++||+||||++... .......+.
T Consensus 117 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~ 196 (401)
T PTZ00424 117 LALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFK 196 (401)
T ss_pred HHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHh
Confidence 88765443332 2222222221112223468999999988654432 22346899999999987542 233444555
Q ss_pred hcc-cceEEEEeCCCC
Q psy12466 526 GLN-IRKRILLSGTPL 540 (680)
Q Consensus 526 ~l~-~~~rllLTgTP~ 540 (680)
.+. ....+++|||+-
T Consensus 197 ~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 197 KLPPDVQVALFSATMP 212 (401)
T ss_pred hCCCCcEEEEEEecCC
Confidence 553 346799999974
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.5e-09 Score=117.55 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=101.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHH-HHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI-ALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~ai-ali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+.|+|.+++..++. ++..|+..++|+|||++.+ .++..+.............+|||||+ .|..|+.++
T Consensus 152 ~pt~iQ~~aip~~l~---------G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~ 222 (545)
T PTZ00110 152 EPTPIQVQGWPIALS---------GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQ 222 (545)
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHH
Confidence 477899999877643 4788999999999999864 33334333211111112358999997 788999999
Q ss_pred HHHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 451 FKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 451 ~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
+.+|.... ++....+...............+|+|+|.+.+...+.. ..-.+.++||+||||++-... ....+.+
T Consensus 223 ~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il 302 (545)
T PTZ00110 223 CNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 302 (545)
T ss_pred HHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHH
Confidence 99987643 33333333333322233344679999999988765432 112357899999999986532 2233344
Q ss_pred Hhcc-cceEEEEeCCC
Q psy12466 525 TGLN-IRKRILLSGTP 539 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP 539 (680)
..+. ....+++|||.
T Consensus 303 ~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 303 SQIRPDRQTLMWSATW 318 (545)
T ss_pred HhCCCCCeEEEEEeCC
Confidence 4443 34568999996
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=120.01 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=101.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+|+|+|.+++..+. .+.+.+++.++|.|||+++...+......+ +++++|+|. +|..|+.+++
T Consensus 22 ~l~~~Q~~ai~~l~---------~~~nvlv~apTGSGKTl~a~lail~~l~~~-------~k~v~i~P~raLa~q~~~~~ 85 (674)
T PRK01172 22 ELYDHQRMAIEQLR---------KGENVIVSVPTAAGKTLIAYSAIYETFLAG-------LKSIYIVPLRSLAMEKYEEL 85 (674)
T ss_pred CCCHHHHHHHHHHh---------cCCcEEEECCCCchHHHHHHHHHHHHHHhC-------CcEEEEechHHHHHHHHHHH
Confidence 48999999998763 246899999999999998765544433332 258999996 7889999999
Q ss_pred HHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcc-cHHHHH-HH-
Q psy12466 452 KKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGK-SKLYEL-MT- 525 (680)
Q Consensus 452 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~-s~~~~~-l~- 525 (680)
.++.. +.++....|....... .....+++|+|++.+......-. -.++++||+||+|.+.+.. ...... +.
T Consensus 86 ~~l~~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~ 162 (674)
T PRK01172 86 SRLRSLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSS 162 (674)
T ss_pred HHHhhcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHH
Confidence 88653 2344444443322211 12457999999998765433211 1357899999999986432 222222 22
Q ss_pred --hc-ccceEEEEeCCCCCCCHHHHHH
Q psy12466 526 --GL-NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 526 --~l-~~~~rllLTgTP~~n~~~el~s 549 (680)
.+ ...+.++||||+- +..++..
T Consensus 163 ~~~~~~~~riI~lSATl~--n~~~la~ 187 (674)
T PRK01172 163 ARYVNPDARILALSATVS--NANELAQ 187 (674)
T ss_pred HHhcCcCCcEEEEeCccC--CHHHHHH
Confidence 22 2345799999973 3555543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=117.46 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=103.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+.|+|.+++..++. +...|+...+|+|||.+. +.++..+..... ...+||+||. .|..||.++
T Consensus 28 ~ptpiQ~~ai~~ll~---------g~dvl~~ApTGsGKT~af~lpll~~l~~~~~-----~~~~LIL~PTreLa~Qv~~~ 93 (629)
T PRK11634 28 KPSPIQAECIPHLLN---------GRDVLGMAQTGSGKTAAFSLPLLHNLDPELK-----APQILVLAPTRELAVQVAEA 93 (629)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEcCCCCcHHHHHHHHHHHHhhhccC-----CCeEEEEeCcHHHHHHHHHH
Confidence 477899999988754 367899999999999985 344444433211 2358999997 788999999
Q ss_pred HHHHh---CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 451 FKKWL---GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 451 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
+.+|. +...+..+++...............+|+|+|.+.+...+.. +.-....+|||||||.+-+.. ......
T Consensus 94 l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~I 173 (629)
T PRK11634 94 MTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173 (629)
T ss_pred HHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHH
Confidence 88875 34556656555443332223345678999999998765432 222357889999999874432 233444
Q ss_pred HHhcc-cceEEEEeCCC
Q psy12466 524 MTGLN-IRKRILLSGTP 539 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP 539 (680)
+..+. ....+++|||.
T Consensus 174 l~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 174 MAQIPEGHQTALFSATM 190 (629)
T ss_pred HHhCCCCCeEEEEEccC
Confidence 55554 34569999996
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=117.35 Aligned_cols=162 Identities=18% Similarity=0.184 Sum_probs=110.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||.|.+++..++. ++..+++..+|.|||+.....+ +... +.++||+|. +|+.++.+.+
T Consensus 13 ~fr~~Q~~~i~~il~---------g~dvlv~~PTG~GKTl~y~lpa--l~~~--------g~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 13 DFRPGQEEIISHVLD---------GRDVLVVMPTGGGKSLCYQVPA--LLLK--------GLTVVISPLISLMKDQVDQL 73 (591)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEcCCCccHhHHHHHHH--HHcC--------CcEEEEcCCHHHHHHHHHHH
Confidence 589999999988754 3679999999999999865333 2222 248999997 7889999988
Q ss_pred HHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHH--HHHhhhccCceEEEEcCcccccCcc---cHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLLICDEGHRLKNGK---SKLYE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~--~~~~l~~~~~~~vIlDEaH~~kn~~---s~~~~ 522 (680)
... +..+..+++....... .....+..+++++|.+.+.. ....+.....++||+||||.+...+ ...+.
T Consensus 74 ~~~--gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 74 RAA--GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred HHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 875 3445555544332221 12234567899999998853 2344556689999999999985322 12222
Q ss_pred HH----HhcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 523 LM----TGLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 523 ~l----~~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
.+ ..+.....+++|||+-.....++...+.+-.
T Consensus 152 ~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~ 188 (591)
T TIGR01389 152 RLGSLAERFPQVPRIALTATADAETRQDIRELLRLAD 188 (591)
T ss_pred HHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 22 3334455899999998887777777665433
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-08 Score=120.77 Aligned_cols=166 Identities=23% Similarity=0.239 Sum_probs=104.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCC-CCccceEEEEecc-chHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYG-MPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~-~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.|+|+|.+++..+.+ +.++++...+|.|||..++. ++..+......+ .+....+|+|+|. .|..|+.+
T Consensus 32 ~~tpiQ~~Ai~~il~---------g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~ 102 (876)
T PRK13767 32 TFTPPQRYAIPLIHE---------GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHR 102 (876)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHH
Confidence 489999999987642 46899999999999998754 444444322111 1123468999997 67777765
Q ss_pred HHH-------HHh-------CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh----hccCceEEEEcCcc
Q psy12466 450 EFK-------KWL-------GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLICDEGH 511 (680)
Q Consensus 450 E~~-------~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l----~~~~~~~vIlDEaH 511 (680)
.+. +++ +..++.+.+|...............+|+|+|.+.+......- .-.+.++||+||+|
T Consensus 103 ~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H 182 (876)
T PRK13767 103 NLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIH 182 (876)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechh
Confidence 433 333 244666677766544443333446789999999986433210 01257899999999
Q ss_pred cccCcc--cHHHHHHHhc-----ccceEEEEeCCCCCCCHHHHHH
Q psy12466 512 RLKNGK--SKLYELMTGL-----NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 512 ~~kn~~--s~~~~~l~~l-----~~~~rllLTgTP~~n~~~el~s 549 (680)
.+.+.. ......+.++ ....++++|||.- ++.++..
T Consensus 183 ~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~va~ 225 (876)
T PRK13767 183 SLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEVAK 225 (876)
T ss_pred hhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHHHH
Confidence 986432 2222223222 2356799999973 3445443
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=114.55 Aligned_cols=160 Identities=15% Similarity=0.122 Sum_probs=103.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCC--CCCCccceEEEEecc-chHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGP--YGMPVIRKVLIVTPS-SLTSNW 447 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~--~~~~~~~~~LIV~P~-sll~qW 447 (680)
..+.|+|.+++..++. ++..|+..++|.|||+..+. ++..+..... ........+|||+|. .|..|+
T Consensus 142 ~~ptpiQ~~aip~il~---------g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi 212 (518)
T PLN00206 142 EFPTPIQMQAIPAALS---------GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQV 212 (518)
T ss_pred CCCCHHHHHHHHHHhc---------CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHH
Confidence 4578999999987753 47899999999999998654 3333332110 001112469999997 677999
Q ss_pred HHHHHHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHH
Q psy12466 448 NDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLY 521 (680)
Q Consensus 448 ~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~ 521 (680)
.+++..+..... +....+...............+|+|+|.+.+...... +.-.+..+||+||||++-.. .....
T Consensus 213 ~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~ 292 (518)
T PLN00206 213 EDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM 292 (518)
T ss_pred HHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH
Confidence 999888865433 2223332222222122234578999999988665432 22235789999999998543 23344
Q ss_pred HHHHhcccceEEEEeCCCC
Q psy12466 522 ELMTGLNIRKRILLSGTPL 540 (680)
Q Consensus 522 ~~l~~l~~~~rllLTgTP~ 540 (680)
+.+..+.....+++|||.-
T Consensus 293 ~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 293 QIFQALSQPQVLLFSATVS 311 (518)
T ss_pred HHHHhCCCCcEEEEEeeCC
Confidence 4555566678899999974
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=117.19 Aligned_cols=162 Identities=18% Similarity=0.158 Sum_probs=107.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|+|.+++..++. ++.+++...+|.|||+.....+ +... +.+|||+|. +|+.++.+.+
T Consensus 25 ~~r~~Q~~ai~~il~---------g~dvlv~apTGsGKTl~y~lpa--l~~~--------g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 25 QFRPGQQEIIDAVLS---------GRDCLVVMPTGGGKSLCYQIPA--LVLD--------GLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEcCCCchHHHHHHHHH--HHcC--------CCEEEEecHHHHHHHHHHHH
Confidence 589999999987753 4678999999999998754322 2222 248999997 7888998888
Q ss_pred HHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHH--HHHhhhccCceEEEEcCcccccCcc---cHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLLICDEGHRLKNGK---SKLYE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~--~~~~l~~~~~~~vIlDEaH~~kn~~---s~~~~ 522 (680)
... ...+....+....... .....+..+++++|.+.+.. ....+...++++||+||||.+...+ ...++
T Consensus 86 ~~~--gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~ 163 (607)
T PRK11057 86 LAN--GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYA 163 (607)
T ss_pred HHc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHH
Confidence 864 2333334333222211 11233557899999888763 3344556678999999999985422 22233
Q ss_pred HHHhc----ccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 523 LMTGL----NIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 523 ~l~~l----~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
.+..+ .....++||||+-.....++...+.+-.
T Consensus 164 ~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~ 200 (607)
T PRK11057 164 ALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND 200 (607)
T ss_pred HHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCC
Confidence 33333 3556799999998877777777665443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=112.00 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=101.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHH-HHHHhcCCC--CCCccceEEEEecc-chHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI-WTLLRQGPY--GMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali-~~~~~~~~~--~~~~~~~~LIV~P~-sll~qW~ 448 (680)
.+.|.|.+++..++. +...++..++|+|||+..+..+ ..+...... .......+|||||. .|..|+.
T Consensus 30 ~pt~iQ~~aip~il~---------g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~ 100 (423)
T PRK04837 30 NCTPIQALALPLTLA---------GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIH 100 (423)
T ss_pred CCCHHHHHHHHHHhC---------CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHH
Confidence 356899999987653 4679999999999999865433 333322110 01112469999997 7889999
Q ss_pred HHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHH
Q psy12466 449 DEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYE 522 (680)
Q Consensus 449 ~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~ 522 (680)
+++..+... .++..+.+...............+|+|+|.+.+...... +.-..+.++|+||||++-... .....
T Consensus 101 ~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~ 180 (423)
T PRK04837 101 ADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRW 180 (423)
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHH
Confidence 998887653 445555554433322222334578999999998765432 223468899999999985432 22222
Q ss_pred HHHhcc---cceEEEEeCCCC
Q psy12466 523 LMTGLN---IRKRILLSGTPL 540 (680)
Q Consensus 523 ~l~~l~---~~~rllLTgTP~ 540 (680)
.+..+. ....+++|||.-
T Consensus 181 i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 181 LFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred HHHhCCCccceeEEEEeccCC
Confidence 333332 233589999974
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=114.37 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=103.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHH-HHHHHhcCC--CCCCccceEEEEecc-chHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL-IWTLLRQGP--YGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aial-i~~~~~~~~--~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
.+.|.|.+++..+++ ++..|+...+|+|||+..+.. +..+..... ...+...++|||||. .|..|+.
T Consensus 31 ~ptpiQ~~~ip~~l~---------G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~ 101 (572)
T PRK04537 31 RCTPIQALTLPVALP---------GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIH 101 (572)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHH
Confidence 477899999988753 477999999999999986554 443432211 011112469999997 7889999
Q ss_pred HHHHHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCcc--cHHH
Q psy12466 449 DEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNGK--SKLY 521 (680)
Q Consensus 449 ~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~~--s~~~ 521 (680)
+++.+|..... +..+++...............+|+|+|.+.+...+.. +.-...++|||||||.+-... ....
T Consensus 102 ~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~ 181 (572)
T PRK04537 102 KDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIR 181 (572)
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHH
Confidence 99999876543 4444554433322222334578999999998765432 222356889999999875422 2222
Q ss_pred HHHHhcc---cceEEEEeCCCCC
Q psy12466 522 ELMTGLN---IRKRILLSGTPLQ 541 (680)
Q Consensus 522 ~~l~~l~---~~~rllLTgTP~~ 541 (680)
..+..+. ....+++|||.-.
T Consensus 182 ~il~~lp~~~~~q~ll~SATl~~ 204 (572)
T PRK04537 182 FLLRRMPERGTRQTLLFSATLSH 204 (572)
T ss_pred HHHHhcccccCceEEEEeCCccH
Confidence 3333343 3457999999643
|
|
| >KOG0298|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-10 Score=131.85 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=90.0
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCC-CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh-------------
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLT-RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT------------- 256 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~------------- 256 (680)
..+.+|||||.+++.||-.||.++++.. ++..|.|-.+.....-.....|+|++|||+.++.....
T Consensus 419 ~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~q 498 (1394)
T KOG0298|consen 419 ETGATLIICPNAILMQWFEEIHKHISSLLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQ 498 (1394)
T ss_pred ecCceEEECcHHHHHHHHHHHHHhccccceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcc
Confidence 3678999999999999999999999766 77777776655443334456799999999999975321
Q ss_pred ---------hhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCC
Q psy12466 257 ---------IVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGI 298 (680)
Q Consensus 257 ---------l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~ 298 (680)
|..+.|=+|++|||+-+..-.|..++.+..|.+.+||+.||+
T Consensus 499 sr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGT 549 (1394)
T KOG0298|consen 499 SRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGT 549 (1394)
T ss_pred cCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCC
Confidence 444558899999999999999999999999999999999996
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-08 Score=111.40 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=102.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCC--CCccceEEEEecc-chHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYG--MPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~--~~~~~~~LIV~P~-sll~qW~ 448 (680)
.+.|||.+++..+++ +...|++..+|+|||+..+. ++..+....... .....++|||+|. .|..|+.
T Consensus 109 ~~~~iQ~~ai~~~~~---------G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~ 179 (475)
T PRK01297 109 YCTPIQAQVLGYTLA---------GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIA 179 (475)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHH
Confidence 478999999987753 46789999999999987543 344443322110 0012468999997 7889999
Q ss_pred HHHHHHhCCC--CeeEeecCCcchh-hhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCccc--HHH
Q psy12466 449 DEFKKWLGLT--RMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKS--KLY 521 (680)
Q Consensus 449 ~E~~~~~~~~--~v~~~~~~~~~~~-~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s--~~~ 521 (680)
+++..+.... .+..+.+...... .........+|+|+|.+++...... +.-.+.++||+||||.+.+... ...
T Consensus 180 ~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~ 259 (475)
T PRK01297 180 KDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVR 259 (475)
T ss_pred HHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHH
Confidence 9998886543 4444555433222 1222234578999999998654332 1123578999999999865432 223
Q ss_pred HHHHhcc---cceEEEEeCCCC
Q psy12466 522 ELMTGLN---IRKRILLSGTPL 540 (680)
Q Consensus 522 ~~l~~l~---~~~rllLTgTP~ 540 (680)
+.+..+. ....+++|||.-
T Consensus 260 ~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 260 QIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred HHHHhCCCCCCceEEEEEeecC
Confidence 3333332 345799999964
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-08 Score=119.87 Aligned_cols=128 Identities=17% Similarity=0.213 Sum_probs=90.7
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...+.++|+.++..++. +...++...+|+|||..++..+..+...+ .++|||||+ .|+.|+.+
T Consensus 78 G~~pt~iQ~~~i~~il~---------g~dv~i~ApTGsGKT~f~l~~~~~l~~~g-------~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL---------GESFAIIAPTGVGKTTFGLVMSLYLAKKG-------KKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred CCCCcHHHHHHHHHHHC---------CCcEEEEcCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeccHHHHHHHHH
Confidence 34588999998877643 46788999999999975544443333322 369999997 78899999
Q ss_pred HHHHHhCCCCe--eEeecCCc----chhh--hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 450 EFKKWLGLTRM--CPYHVNQK----NKAE--DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 450 E~~~~~~~~~v--~~~~~~~~----~~~~--~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.++++.....+ ....+... .+.. .....+.++|+|+|.+.+.+....+....++++|+||||++-
T Consensus 142 ~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 142 KLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhh
Confidence 99999865433 23333221 1111 112234689999999999988776666679999999999874
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=116.56 Aligned_cols=159 Identities=23% Similarity=0.183 Sum_probs=110.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|.|+.+|...+. .+.+.+++..+|.|||+.|...+..-...+. .+++.|||. +|..+=.++|
T Consensus 31 el~~~qq~av~~~~~--------~~~N~li~aPTgsGKTlIA~lai~~~l~~~~------~k~vYivPlkALa~Ek~~~~ 96 (766)
T COG1204 31 ELFNPQQEAVEKGLL--------SDENVLISAPTGSGKTLIALLAILSTLLEGG------GKVVYIVPLKALAEEKYEEF 96 (766)
T ss_pred HhhHHHHHHhhcccc--------CCCcEEEEcCCCCchHHHHHHHHHHHHHhcC------CcEEEEeChHHHHHHHHHHh
Confidence 789999999965432 2789999999999999999776665555431 359999996 8889999999
Q ss_pred HHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCc-ccHHHHH----
Q psy12466 452 KKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNG-KSKLYEL---- 523 (680)
Q Consensus 452 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~-~s~~~~~---- 523 (680)
.+|-. +.+|..+.++..... .....++|+|+||+.+........ -...++||+||+|.+... .......
T Consensus 97 ~~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r 173 (766)
T COG1204 97 SRLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVAR 173 (766)
T ss_pred hhHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHH
Confidence 95543 357777777665433 233578999999999865433322 236789999999999665 2222211
Q ss_pred HHhccc-ceEEEEeCCCCCCCHHHHHHH
Q psy12466 524 MTGLNI-RKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 524 l~~l~~-~~rllLTgTP~~n~~~el~sl 550 (680)
+..... -+.++||||- .|..|+...
T Consensus 174 ~~~~~~~~rivgLSATl--pN~~evA~w 199 (766)
T COG1204 174 MRRLNELIRIVGLSATL--PNAEEVADW 199 (766)
T ss_pred HHhhCcceEEEEEeeec--CCHHHHHHH
Confidence 122222 4679999995 345555443
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=111.66 Aligned_cols=153 Identities=22% Similarity=0.306 Sum_probs=104.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|.++|.+++..+.+. ......+|...+|.|||...+.++......+ +.+||++|. .+..|+.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~------~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-------~~vLvLvPt~~L~~Q~~~~ 209 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAA------AGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-------KQALVLVPEIALTPQMLAR 209 (679)
T ss_pred CCCCHHHHHHHHHHHhc------cCCCcEEEECCCCChHHHHHHHHHHHHHHcC-------CeEEEEeCcHHHHHHHHHH
Confidence 36999999999888652 1345689999999999999887776665554 359999997 788999999
Q ss_pred HHHHhCCCCeeEeecCCcchh--hhh--hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc--CcccHHH--H
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKA--EDY--VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK--NGKSKLY--E 522 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~--~~~--~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k--n~~s~~~--~ 522 (680)
+.+.++. .+.++++...... ..+ ...+..+|+|.|.+.+. +.-.++++||+||+|... ......+ +
T Consensus 210 l~~~fg~-~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 210 FRARFGA-PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred HHHHhCC-CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 9998764 6777776544322 222 22346789999987653 222468899999999753 2222211 1
Q ss_pred H---H-HhcccceEEEEeCCCCCCC
Q psy12466 523 L---M-TGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 523 ~---l-~~l~~~~rllLTgTP~~n~ 543 (680)
. + ........+++||||....
T Consensus 284 ~va~~ra~~~~~~~il~SATps~~s 308 (679)
T PRK05580 284 DLAVVRAKLENIPVVLGSATPSLES 308 (679)
T ss_pred HHHHHHhhccCCCEEEEcCCCCHHH
Confidence 1 1 1224456789999996433
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.9e-08 Score=113.09 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=104.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
+|++||.+++..+++ +.+.++...+|+|||+..+. ++..+... + ..++|||+|. .|..|-.++
T Consensus 36 ~p~~~Q~~ai~~il~---------G~nvvv~apTGSGKTla~~LPiL~~l~~~-~-----~~~aL~l~PtraLa~q~~~~ 100 (742)
T TIGR03817 36 RPWQHQARAAELAHA---------GRHVVVATGTASGKSLAYQLPVLSALADD-P-----RATALYLAPTKALAADQLRA 100 (742)
T ss_pred cCCHHHHHHHHHHHC---------CCCEEEECCCCCcHHHHHHHHHHHHHhhC-C-----CcEEEEEcChHHHHHHHHHH
Confidence 588999999988743 57899999999999998644 44444432 2 2368999997 777888888
Q ss_pred HHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh------hhccCceEEEEcCcccccCc-ccHHHH
Q psy12466 451 FKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT------IVDTEFDLLICDEGHRLKNG-KSKLYE 522 (680)
Q Consensus 451 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~------l~~~~~~~vIlDEaH~~kn~-~s~~~~ 522 (680)
+.++.. ..++..++|.......... ....+|+|+|.+++....-. ..-.+..+||+||||.+.+. .+....
T Consensus 101 l~~l~~~~i~v~~~~Gdt~~~~r~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~ 179 (742)
T TIGR03817 101 VRELTLRGVRPATYDGDTPTEERRWA-REHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVAL 179 (742)
T ss_pred HHHhccCCeEEEEEeCCCCHHHHHHH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHH
Confidence 888752 4566777776554333222 23478999999988642110 00125789999999998652 233333
Q ss_pred HHHhc--------ccceEEEEeCCCCCCCHHHH
Q psy12466 523 LMTGL--------NIRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 523 ~l~~l--------~~~~rllLTgTP~~n~~~el 547 (680)
.+.++ .....+++|||.- ++.++
T Consensus 180 il~rL~ri~~~~g~~~q~i~~SATi~--n~~~~ 210 (742)
T TIGR03817 180 VLRRLRRLCARYGASPVFVLASATTA--DPAAA 210 (742)
T ss_pred HHHHHHHHHHhcCCCCEEEEEecCCC--CHHHH
Confidence 33333 1245799999953 34454
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.2e-08 Score=114.14 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=110.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..|+.||.+|++.+.+ +++.++.-.+|+|||..-+. ++..+..... .+.|+|-|. .|...-.+
T Consensus 69 ~~lY~HQ~~A~~~~~~---------G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 69 ERLYSHQVDALRLIRE---------GRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALANDQAE 133 (851)
T ss_pred ccccHHHHHHHHHHHC---------CCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhHhhHHH
Confidence 3499999999998853 58899999999999998654 4445444432 368999996 67788888
Q ss_pred HHHHHhCC----CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH------hhhccCceEEEEcCcccccCc-cc
Q psy12466 450 EFKKWLGL----TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ------TIVDTEFDLLICDEGHRLKNG-KS 518 (680)
Q Consensus 450 E~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~------~l~~~~~~~vIlDEaH~~kn~-~s 518 (680)
.|.+|..+ ..+..|+|...............+|++|+|+|+.-..- .....++.+||+||+|.+++. .|
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS 213 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGS 213 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchh
Confidence 88888743 34666777766555555566788999999999965221 112234899999999998764 56
Q ss_pred HHHHHHHhcc--------cceEEEEeCCC
Q psy12466 519 KLYELMTGLN--------IRKRILLSGTP 539 (680)
Q Consensus 519 ~~~~~l~~l~--------~~~rllLTgTP 539 (680)
...-.+++|. ....++.|||-
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~ 242 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATL 242 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccc
Confidence 6665666652 23458888885
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.7e-08 Score=116.01 Aligned_cols=162 Identities=22% Similarity=0.302 Sum_probs=108.1
Q ss_pred ccHHHHHHHHHhhhhhcc-CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLAS-LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~-~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
+|..+++..+++...... ..+.||++.|-.|+|||++++-++..+.... ....+++|+.. -|-.|-.++|..+
T Consensus 252 ~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~-----~~~~v~fvvDR~dLd~Q~~~~f~~~ 326 (962)
T COG0610 252 AQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELP-----KNPKVLFVVDRKDLDDQTSDEFQSF 326 (962)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhcc-----CCCeEEEEechHHHHHHHHHHHHHH
Confidence 444555533333322222 4567899999999999999998888887762 23468899986 5669999999998
Q ss_pred hCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh----hhccCceEEEEcCcccccCcccHHHHHHH-hccc
Q psy12466 455 LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT----IVDTEFDLLICDEGHRLKNGKSKLYELMT-GLNI 529 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~----l~~~~~~~vIlDEaH~~kn~~s~~~~~l~-~l~~ 529 (680)
........ ...+..............|+|||-+.|...... ....+.-+||+||||+.-.+ ...+.+. .++.
T Consensus 327 ~~~~~~~~-~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G--~~~~~~~~~~~~ 403 (962)
T COG0610 327 GKVAFNDP-KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG--ELAKLLKKALKK 403 (962)
T ss_pred HHhhhhcc-cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc--HHHHHHHHHhcc
Confidence 76543333 333333333444444668999999999876643 23456678999999986433 2233333 3355
Q ss_pred ceEEEEeCCCCCCCHHH
Q psy12466 530 RKRILLSGTPLQNDLQE 546 (680)
Q Consensus 530 ~~rllLTgTP~~n~~~e 546 (680)
..-++.||||+...-.+
T Consensus 404 a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 404 AIFIGFTGTPIFKEDKD 420 (962)
T ss_pred ceEEEeeCCcccccccc
Confidence 67799999999765444
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=100.30 Aligned_cols=148 Identities=18% Similarity=0.254 Sum_probs=91.0
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL 455 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~ 455 (680)
||.++++.+.+. +....+++..+|.|||..++..+.. .. .++++++|. +++.+|.+.+.+++
T Consensus 1 hQ~~~~~~~~~~-------~~~~~~i~apTGsGKT~~~~~~~l~--~~--------~~~~~~~P~~aL~~~~~~~~~~~~ 63 (357)
T TIGR03158 1 HQVATFEALQSK-------DADIIFNTAPTGAGKTLAWLTPLLH--GE--------NDTIALYPTNALIEDQTEAIKEFV 63 (357)
T ss_pred CHHHHHHHHHcC-------CCCEEEEECCCCCCHHHHHHHHHHH--cC--------CCEEEEeChHHHHHHHHHHHHHHH
Confidence 799999888642 2345788999999999987654432 11 247999996 78899988888887
Q ss_pred C------CCCeeEeecCCcchhhhh--------------------hhcCCCCEEEEeHHHHHHHHHhhh----------c
Q psy12466 456 G------LTRMCPYHVNQKNKAEDY--------------------VYSRVSPVLIISYEMLIRAYQTIV----------D 499 (680)
Q Consensus 456 ~------~~~v~~~~~~~~~~~~~~--------------------~~~~~~~vvI~ty~~l~~~~~~l~----------~ 499 (680)
. ...+..+.+........+ .......+++|+++++........ .
T Consensus 64 ~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~ 143 (357)
T TIGR03158 64 DVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFY 143 (357)
T ss_pred HhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhh
Confidence 2 222333333211110000 012346789999999865332210 1
Q ss_pred cCceEEEEcCcccccCccc-------HHHHHHHhc-ccceEEEEeCCCCC
Q psy12466 500 TEFDLLICDEGHRLKNGKS-------KLYELMTGL-NIRKRILLSGTPLQ 541 (680)
Q Consensus 500 ~~~~~vIlDEaH~~kn~~s-------~~~~~l~~l-~~~~rllLTgTP~~ 541 (680)
..+++||+||+|.+..... .....+... ...+.++|||||-.
T Consensus 144 ~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 144 TKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred cCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH
Confidence 3578999999999864221 111222211 23578999999853
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0383|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-08 Score=114.37 Aligned_cols=106 Identities=26% Similarity=0.299 Sum_probs=92.2
Q ss_pred eEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh---------h-------------cccCCCCEEEEehhHHH
Q psy12466 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED---------Y-------------VYSRVSPVLIISYEMLI 251 (680)
Q Consensus 194 ~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~---------~-------------~~~~~~~V~itsYe~l~ 251 (680)
+.|+++|.|++.||.+||..|+|...+..|+|+.+.+... . .......|.++||++..
T Consensus 347 P~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~ 426 (696)
T KOG0383|consen 347 PPLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIE 426 (696)
T ss_pred CceeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcc
Confidence 6799999999999999999999999999999987643221 0 01233569999999999
Q ss_pred HHHHhhhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 252 RAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 252 ~~~~~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
.....+..+.|.++|.||||||||..++..+.+..-...+|++|||+.
T Consensus 427 ~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtP 474 (696)
T KOG0383|consen 427 IDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTP 474 (696)
T ss_pred cCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCc
Confidence 999999999999999999999999999999999999999999999843
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.2e-07 Score=107.66 Aligned_cols=228 Identities=17% Similarity=0.210 Sum_probs=141.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~ 451 (680)
.--|-|..|++-..+= +.....---++|-|+|.|||-.|+-.+-..-..|. -+.|+||++++ .|-.+.|
T Consensus 594 eET~DQl~AI~eVk~D---M~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK-------QVAvLVPTTlLA~QHy~tF 663 (1139)
T COG1197 594 EETPDQLKAIEEVKRD---MESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK-------QVAVLVPTTLLAQQHYETF 663 (1139)
T ss_pred cCCHHHHHHHHHHHHH---hccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC-------eEEEEcccHHhHHHHHHHH
Confidence 3456799999887663 44555666799999999999998765544444443 49999999877 6667777
Q ss_pred HHHhCCCCeeEeecCCcc--h----hhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKN--K----AEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~--~----~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
.+-+.+..|.+-..+.-. + .......+.-||+|-|+..+.+++. -.+.+++|+||=|++. =+....++
T Consensus 664 keRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~---FkdLGLlIIDEEqRFG---Vk~KEkLK 737 (1139)
T COG1197 664 KERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK---FKDLGLLIIDEEQRFG---VKHKEKLK 737 (1139)
T ss_pred HHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcE---EecCCeEEEechhhcC---ccHHHHHH
Confidence 766666555554333221 1 1223456788999999998876543 2357899999999984 34445677
Q ss_pred hcccc-eEEEEeCCCCCCCHHHHHHHH---hhhCCCCCCC--HHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHH
Q psy12466 526 GLNIR-KRILLSGTPLQNDLQEFFYLN---DFANPGVLGS--LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKR 599 (680)
Q Consensus 526 ~l~~~-~rllLTgTP~~n~~~el~sll---~fl~p~~l~~--~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~ 599 (680)
.++++ ..+-|||||++..+.=-.+=+ ..+.-.+.+. -.+|...|.. .--+...++++
T Consensus 738 ~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~-----------------~~ireAI~REl 800 (1139)
T COG1197 738 ELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDD-----------------LLIREAILREL 800 (1139)
T ss_pred HHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCCh-----------------HHHHHHHHHHH
Confidence 77544 789999999998664221111 1121111111 1122222211 11223344555
Q ss_pred hcc---cee-eec------hhHHhhcCCCcEEEEEEecCCHHHH
Q psy12466 600 TAG---FIL-RRT------SDVQASLLNSKRETLLVCRATPLQQ 633 (680)
Q Consensus 600 l~~---f~l-Rrt------k~~v~~~LP~k~e~~v~v~ms~~Q~ 633 (680)
.+. |.+ -|. .+.+...+|+-.--+..=.|++.+-
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eL 844 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMREREL 844 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHH
Confidence 532 333 332 2345566899998899999998874
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.8e-07 Score=107.80 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=102.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..+||+|++++..++. ++.+++...+|.|||+....-+. ... +.+|||+|. +|+.++...
T Consensus 459 ~sFRp~Q~eaI~aiL~---------GrDVLVimPTGSGKSLcYQLPAL--~~~--------GiTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 459 HSFRPNQREIINATMS---------GYDVFVLMPTGGGKSLTYQLPAL--ICP--------GITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEcCCCccHHHHHHHHHH--HcC--------CcEEEEeCHHHHHHHHHHH
Confidence 5699999999987753 46799999999999987543322 111 248999997 777655555
Q ss_pred HHHHhCCCCeeEeecCCcchhh-hh---h--hcCCCCEEEEeHHHHHHH---HHhh---h-ccCceEEEEcCcccccCcc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAE-DY---V--YSRVSPVLIISYEMLIRA---YQTI---V-DTEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~-~~---~--~~~~~~vvI~ty~~l~~~---~~~l---~-~~~~~~vIlDEaH~~kn~~ 517 (680)
+... ...+..+.+....... .. . ..+..+++++|.+.+... ...+ . .....+|||||||.+-..+
T Consensus 520 L~~~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWG 597 (1195)
T PLN03137 520 LLQA--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWG 597 (1195)
T ss_pred HHhC--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcc
Confidence 5542 3344444433322111 11 1 125678999999987531 2222 2 2347899999999975422
Q ss_pred ---cHHHHHH----HhcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 518 ---SKLYELM----TGLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 518 ---s~~~~~l----~~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
..-++.+ ..+.....++||||.-.....|+...+.+..
T Consensus 598 hDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~ 642 (1195)
T PLN03137 598 HDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVN 642 (1195)
T ss_pred cchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCC
Confidence 1222322 2334556799999998887778877665543
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.7e-07 Score=97.72 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=85.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchh-------
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA------- 471 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~------- 471 (680)
.++...+|.|||.+++..+......+. ..++++++|. +++.|+.+.+..+++. .+..+++......
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~-----~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQK-----ADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCC-----CCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCc
Confidence 478899999999998887765544332 2469999996 8889999999998775 3333333221100
Q ss_pred ----hhh-------hhcCCCCEEEEeHHHHHHHHHh--------hhccCceEEEEcCcccccCcccH-HHHHHHhcc--c
Q psy12466 472 ----EDY-------VYSRVSPVLIISYEMLIRAYQT--------IVDTEFDLLICDEGHRLKNGKSK-LYELMTGLN--I 529 (680)
Q Consensus 472 ----~~~-------~~~~~~~vvI~ty~~l~~~~~~--------l~~~~~~~vIlDEaH~~kn~~s~-~~~~l~~l~--~ 529 (680)
... ......+++++|.+.+...... +......+||+||+|.+...... ....+..+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~ 155 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDND 155 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 000 0112467999999987654332 11223478999999998643221 222233332 3
Q ss_pred ceEEEEeCCCC
Q psy12466 530 RKRILLSGTPL 540 (680)
Q Consensus 530 ~~rllLTgTP~ 540 (680)
...+++|||+-
T Consensus 156 ~~~i~~SATlp 166 (358)
T TIGR01587 156 VPILLMSATLP 166 (358)
T ss_pred CCEEEEecCch
Confidence 45699999974
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-07 Score=101.38 Aligned_cols=127 Identities=24% Similarity=0.270 Sum_probs=87.0
Q ss_pred EEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchh--hhh--hh
Q psy12466 402 LADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--EDY--VY 476 (680)
Q Consensus 402 LaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~--~~~--~~ 476 (680)
|.-.+|.|||...+.++......+. .+||++|. +|..|+.+.|++.++. .+.++++...... ..+ ..
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g~-------~vLvlvP~i~L~~Q~~~~l~~~f~~-~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALGK-------SVLVLVPEIALTPQMIQRFKYRFGS-QVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCC-------eEEEEeCcHHHHHHHHHHHHHHhCC-cEEEEECCCCHHHHHHHHHHHH
Confidence 4558999999999888777666542 59999997 7889999999988764 5666766543322 222 12
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc--CcccHHH------HHHHhcccceEEEEeCCCCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK--NGKSKLY------ELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k--n~~s~~~------~~l~~l~~~~rllLTgTP~~ 541 (680)
.+..+|+|+|.+.+. ..-.++++||+||+|... ......+ ...........+++||||..
T Consensus 74 ~g~~~IVVGTrsalf-----~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 74 NGEILVVIGTRSALF-----LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred cCCCCEEECChHHHc-----CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 356789999998763 223467999999999863 2222221 11223345668999999963
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=101.00 Aligned_cols=172 Identities=21% Similarity=0.185 Sum_probs=115.6
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|+|+.++..+. .|.+.++...+|.|||..|+. .+..+...++......=.+|.|.|. .|...-..
T Consensus 21 ~~~t~~Q~~a~~~i~---------~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~ 91 (814)
T COG1201 21 TSLTPPQRYAIPEIH---------SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRR 91 (814)
T ss_pred CCCCHHHHHHHHHHh---------CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHH
Confidence 458899999997763 578999999999999999855 5555665531111111248999996 55555555
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhc--cCceEEEEcCcccccCc--ccHHH
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVD--TEFDLLICDEGHRLKNG--KSKLY 521 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~--~~~~~vIlDEaH~~kn~--~s~~~ 521 (680)
.+..|.. +..+.+.||......+........+|+|||.+++.-.... +.. .+..+||+||.|.+.+. +.+++
T Consensus 92 rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 92 RLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhh
Confidence 5555542 3456677777766666666667789999999999643321 111 24678999999999754 45555
Q ss_pred HHHHhc---c-cceEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy12466 522 ELMTGL---N-IRKRILLSGTPLQNDLQEFFYLNDFANPG 557 (680)
Q Consensus 522 ~~l~~l---~-~~~rllLTgTP~~n~~~el~sll~fl~p~ 557 (680)
-.+.+| . .-.|++||||=- ++.++ .+||.+.
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~ 206 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGF 206 (814)
T ss_pred hhHHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCC
Confidence 555555 2 356899999964 44444 5566554
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-06 Score=79.31 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
+.--+|-.-+|.|||..++- ++......+ .++||+.|+-++ .+|+.+...+..+....... .. .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~-------~rvLvL~PTRvv---a~em~~aL~~~~~~~~t~~~-~~----~ 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRR-------LRVLVLAPTRVV---AEEMYEALKGLPVRFHTNAR-MR----T 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT---------EEEEESSHHH---HHHHHHHTTTSSEEEESTTS-S------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHcc-------CeEEEecccHHH---HHHHHHHHhcCCcccCceee-ec----c
Confidence 34467788899999998765 344344433 369999998655 24455555554433322111 11 1
Q ss_pred hcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHHHHH-Hhc---ccceEEEEeCCCCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLYELM-TGL---NIRKRILLSGTPLQN 542 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~~~l-~~l---~~~~rllLTgTP~~n 542 (680)
..+...|-+++|.++...... ....+|++||+||||.. ++.+-..+.. ..+ .....++|||||-..
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred ccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 234567899999998765432 23357999999999974 3444433332 222 223579999999543
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=107.92 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=90.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+.+.|+.++..++. +...++...+|+|||..++.++..+...+ .++|||+|+ .|..|+.+++
T Consensus 78 ~p~~iQ~~~i~~il~---------G~d~vi~ApTGsGKT~f~l~~~~~l~~~g-------~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLR---------GDSFAIIAPTGVGKTTFGLAMSLFLAKKG-------KRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred CCcHHHHHHHHHHhC---------CCeEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeCHHHHHHHHHHHH
Confidence 478899999877643 46788899999999986665555444332 369999997 7779999999
Q ss_pred HHHhCCCC--e---eEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 452 KKWLGLTR--M---CPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 452 ~~~~~~~~--v---~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
..++.... . ..+++....... .....+.++|+|+|.+.+.+....+.. .++++|+||||++-.
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 99886432 2 234554333221 112234589999999999887776655 899999999999854
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=102.74 Aligned_cols=161 Identities=22% Similarity=0.304 Sum_probs=103.9
Q ss_pred CcccHHHHHHHHHhhhhhcc-----------------------------CCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 375 KPHQRQGVSFLYERVCDLAS-----------------------------LDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~-----------------------------~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.|||.+||..++..+.+... ....+..+.+++|+|||.+++..+..+....
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 58999999988876543221 1124678889999999999999998887775
Q ss_pred CCCCCccceEEEEeccchH-HHHH---------HHHHHHhCCCCe--eEeecCC---------cchhhhhhhcC-----C
Q psy12466 426 PYGMPVIRKVLIVTPSSLT-SNWN---------DEFKKWLGLTRM--CPYHVNQ---------KNKAEDYVYSR-----V 479 (680)
Q Consensus 426 ~~~~~~~~~~LIV~P~sll-~qW~---------~E~~~~~~~~~v--~~~~~~~---------~~~~~~~~~~~-----~ 479 (680)
+ ..++|||||...+ .... +.|...++..++ .+|.... ......+.... .
T Consensus 88 ~-----~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~ 162 (986)
T PRK15483 88 G-----LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNT 162 (986)
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCc
Confidence 4 3569999998433 3332 223333343333 3343322 11122232222 3
Q ss_pred CCEEEEeHHHHHHHH------Hhh--hc--cCc-------eEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCC
Q psy12466 480 SPVLIISYEMLIRAY------QTI--VD--TEF-------DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~------~~l--~~--~~~-------~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~ 541 (680)
-.|.+++-+++.+.. +.+ .. ..| -+||+||+|++.. ..+..+++..++.-+.+..|||--.
T Consensus 163 I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 163 IHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred eEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecCC
Confidence 579999999886531 111 11 122 3799999999965 3456788999999999999999754
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.1e-07 Score=83.18 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=73.3
Q ss_pred CCeEEEEECcccHHHH-HHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh--hcCCCcEEEE
Q psy12466 192 ILRVLIVTPSSLTSNW-NDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLIC 267 (680)
Q Consensus 192 ~~~~LIV~P~sl~~nW-~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l--~~~~~~~vI~ 267 (680)
.+++||+||...+.+| .+++.+|.. ...+..++................+|++++|+.+....... ....++++|+
T Consensus 30 ~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iii 109 (144)
T cd00046 30 GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLIL 109 (144)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEE
Confidence 5689999998887655 566677664 34455555444333333333466889999999887765532 3457999999
Q ss_pred cCCCCCCCCCCCCC---ccccCCCCCCceeccCC
Q psy12466 268 DEKSLLKPPSGNSP---GNDSGIPSLPRKSDSGI 298 (680)
Q Consensus 268 DEaH~lKN~~s~~~---~a~~~l~~~~r~~LTG~ 298 (680)
||+|.+++...... .........+.+.+||+
T Consensus 110 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 143 (144)
T cd00046 110 DEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred eCHHHHhhcchHHHHHHHHhhCCccceEEEEecc
Confidence 99999998875543 33444566678888875
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=93.86 Aligned_cols=157 Identities=19% Similarity=0.178 Sum_probs=109.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHh-cCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLR-QGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~-~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
+.|-|..+.-.++ .++.++....+|.|||+.- |-++..+.. .+....+....+||++|+ -|..|-.++
T Consensus 114 PtpIQaq~wp~~l---------~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~ 184 (519)
T KOG0331|consen 114 PTPIQAQGWPIAL---------SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAE 184 (519)
T ss_pred Cchhhhcccceec---------cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHH
Confidence 3455665554443 3578899999999999973 445555554 333334444569999998 778999999
Q ss_pred HHHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCccccc--CcccHHHHHH
Q psy12466 451 FKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLK--NGKSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~k--n~~s~~~~~l 524 (680)
+.+|..... ..++.|...............+|+|+|...+...++. +.-.+..++|+|||.++- ....+.-+.+
T Consensus 185 ~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il 264 (519)
T KOG0331|consen 185 AREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKIL 264 (519)
T ss_pred HHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHH
Confidence 999987655 4555555555544445556789999999999876654 233468899999999984 4567778888
Q ss_pred Hhc-ccce-EEEEeCCC
Q psy12466 525 TGL-NIRK-RILLSGTP 539 (680)
Q Consensus 525 ~~l-~~~~-rllLTgTP 539 (680)
.++ +..+ -++.|||=
T Consensus 265 ~~i~~~~rQtlm~saTw 281 (519)
T KOG0331|consen 265 SQIPRPDRQTLMFSATW 281 (519)
T ss_pred HhcCCCcccEEEEeeec
Confidence 888 4443 57777774
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.2e-06 Score=97.19 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=91.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+.+..+.- ..|+|....+|.|||++++..+......+ +.++||+|+ .|..+|.+++
T Consensus 68 glrpydVQlig~l~l---------~~G~Iaem~TGeGKTLta~Lpa~l~aL~g-------~~V~VVTpn~yLA~Rdae~m 131 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL---------HQGNIAEMKTGEGKTLTATMPLYLNALTG-------KGAMLVTTNDYLAKRDAEEM 131 (762)
T ss_pred CCCccHHHHHHHHHh---------cCCceeEecCCcchHHHHHHHHHHHhhcC-------CceEEeCCCHHHHHHHHHHH
Confidence 478888888876642 24679999999999999765543322222 248999998 6778888887
Q ss_pred HHHhCCC--CeeEeecC-Ccc--hhhhhhhcCCCCEEEEeHHHHHHHH--H-------hhhccCceEEEEcCcccccCcc
Q psy12466 452 KKWLGLT--RMCPYHVN-QKN--KAEDYVYSRVSPVLIISYEMLIRAY--Q-------TIVDTEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 452 ~~~~~~~--~v~~~~~~-~~~--~~~~~~~~~~~~vvI~ty~~l~~~~--~-------~l~~~~~~~vIlDEaH~~kn~~ 517 (680)
..++..+ .+.+..+. ... ..........++|+++|.+.+..++ + .....++.++|+||||.+--..
T Consensus 132 ~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe 211 (762)
T TIGR03714 132 GPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS 211 (762)
T ss_pred HHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc
Confidence 6665332 33332222 111 1111112235899999999984321 1 1223468899999999863221
Q ss_pred cHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 518 SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 518 s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
++..+++||.|-.. .++|..+
T Consensus 212 -----------artpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 212 -----------AQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred -----------CcCCeeeeCCCccc--hHHHHHH
Confidence 33457788866433 3455554
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-05 Score=81.53 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=106.0
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+|-|+|+.+-+-+++.+ ....--|+..-+|.|||-+....+....++|. ++.|..|. .++-.-..
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i-----~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~-------~vciASPRvDVclEl~~ 162 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYI-----KQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG-------RVCIASPRVDVCLELYP 162 (441)
T ss_pred ccccChhHHHHHHHHHHHH-----HhcCcEEEEEecCCCchhhhHHHHHHHHhcCC-------eEEEecCcccchHHHHH
Confidence 4679999999998888764 33456788889999999999999988888874 58888896 66677777
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc-cHHHHHHHhc-
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK-SKLYELMTGL- 527 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~-s~~~~~l~~l- 527 (680)
.+++-++...+...++.+..... .+++|+|-..+.+.. ..||++|+||+..+--.. -.+.-++.+-
T Consensus 163 Rlk~aF~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-----~aFD~liIDEVDAFP~~~d~~L~~Av~~ar 230 (441)
T COG4098 163 RLKQAFSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-----QAFDLLIIDEVDAFPFSDDQSLQYAVKKAR 230 (441)
T ss_pred HHHHhhccCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-----hhccEEEEeccccccccCCHHHHHHHHHhh
Confidence 88888888888888887654432 345554444443332 359999999999873332 2233344433
Q ss_pred -ccceEEEEeCCCCCC
Q psy12466 528 -NIRKRILLSGTPLQN 542 (680)
Q Consensus 528 -~~~~rllLTgTP~~n 542 (680)
....++.|||||-..
T Consensus 231 k~~g~~IylTATp~k~ 246 (441)
T COG4098 231 KKEGATIYLTATPTKK 246 (441)
T ss_pred cccCceEEEecCChHH
Confidence 345679999999643
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.1e-06 Score=103.88 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=88.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+++.|..++..+++ ++..++...+|+|||...+.++..+...+ ..+|||+|+ .|+.|..+.+
T Consensus 79 ~pt~iQ~~~i~~il~---------G~d~li~APTGsGKTl~~~~~al~~~~~g-------~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 79 EFWSIQKTWAKRILR---------GKSFSIVAPTGMGKSTFGAFIALFLALKG-------KKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEEcCCCCHHHHHHHHHHHHHhcC-------CeEEEEECHHHHHHHHHHHH
Confidence 478899999988754 46788999999999984333332222222 358999997 7889999999
Q ss_pred HHHhCC----CCeeEeecCCcchhhh----hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 452 KKWLGL----TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 452 ~~~~~~----~~v~~~~~~~~~~~~~----~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
..++.. .++..+++........ ....+..+|+|+|.+.+......+....++++|+||||.+-
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecc
Confidence 988753 3445555554433221 12235689999999988776665555679999999999873
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=95.51 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=98.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
...+|+|..+.... .+++-.||-..||.|||-.++.++..+...+. .+++++..|. .+..+-.+.
T Consensus 285 ~~p~p~Q~~~~~~~---------~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-----~~gi~~aLPT~Atan~m~~R 350 (878)
T PRK09694 285 YQPRQLQTLVDALP---------LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-----ADSIIFALPTQATANAMLSR 350 (878)
T ss_pred CCChHHHHHHHhhc---------cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CCeEEEECcHHHHHHHHHHH
Confidence 35788998663211 23455788999999999999998887766543 3468999997 455666666
Q ss_pred HHH----HhCCCCeeEeecCCcchh----------------------hhhhh-c----CCCCEEEEeHHHHHHHHHh---
Q psy12466 451 FKK----WLGLTRMCPYHVNQKNKA----------------------EDYVY-S----RVSPVLIISYEMLIRAYQT--- 496 (680)
Q Consensus 451 ~~~----~~~~~~v~~~~~~~~~~~----------------------~~~~~-~----~~~~vvI~ty~~l~~~~~~--- 496 (680)
+.+ .++...+.+.|+...-.. ..+.. . -..+++|+|.+.+....-.
T Consensus 351 l~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh 430 (878)
T PRK09694 351 LEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH 430 (878)
T ss_pred HHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch
Confidence 654 344556666666443110 00111 0 1258999999887632211
Q ss_pred --h--hccCceEEEEcCcccccCcccHHHH-HHHhc--ccceEEEEeCCCCCCCHHHHH
Q psy12466 497 --I--VDTEFDLLICDEGHRLKNGKSKLYE-LMTGL--NIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 497 --l--~~~~~~~vIlDEaH~~kn~~s~~~~-~l~~l--~~~~rllLTgTP~~n~~~el~ 548 (680)
+ ....-.+||+||+|.+-........ .+..+ .....++||||+-..--.+|.
T Consensus 431 ~~lR~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 431 RFIRGFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred HHHHHHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Confidence 1 1223458999999998443333222 23322 234579999998554434443
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.7e-06 Score=96.05 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=91.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
++|||.+++..++. +....++...+|+|||....+++..+... .....+++++||. .|..|=.+++.
T Consensus 16 PtpiQ~~~i~~il~--------G~~~v~~~apTGSGKTaa~aafll~~~~~----~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 16 PFPWQLSLAERFVA--------GQPPESCSTPTGLGKTSIIAAWLLAVEIG----AKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred CCHHHHHHHHHHHc--------CCCcceEecCCCCcccHHHHHhhcccccc----ccccceEEEeCchHHHHHHHHHHHH
Confidence 78999999987643 11246667899999997654444333211 1123445557797 77788888888
Q ss_pred HHhCC-------------------------CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--------h--
Q psy12466 453 KWLGL-------------------------TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--------I-- 497 (680)
Q Consensus 453 ~~~~~-------------------------~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--------l-- 497 (680)
++... .++..+.|...............+|+|.|.+++.+..-. .
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRP 163 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccccccccc
Confidence 87642 233434444333333333334568999998777542210 0
Q ss_pred -h---ccCceEEEEcCcccccCcccHHHHHHHhc--cc----ceEEEEeCCCCC
Q psy12466 498 -V---DTEFDLLICDEGHRLKNGKSKLYELMTGL--NI----RKRILLSGTPLQ 541 (680)
Q Consensus 498 -~---~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--~~----~~rllLTgTP~~ 541 (680)
. -.+..++|+||||..........+.+..+ .. ...+++|||+-.
T Consensus 164 i~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ 217 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRT 217 (844)
T ss_pred chhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCc
Confidence 0 12467999999993333233333333322 11 357999999843
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=99.05 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=89.4
Q ss_pred EcCCCCChHHHHHH-HHHHHHhcCCC-----CCCccceEEEEecc-chHHHHHHHHHH----H----------hCCCCee
Q psy12466 403 ADEMGLGKTLQCIA-LIWTLLRQGPY-----GMPVIRKVLIVTPS-SLTSNWNDEFKK----W----------LGLTRMC 461 (680)
Q Consensus 403 aDemGlGKT~~aia-li~~~~~~~~~-----~~~~~~~~LIV~P~-sll~qW~~E~~~----~----------~~~~~v~ 461 (680)
+..+|+|||+.+.. ++..+...... ..+...++|+|+|. .|..+=.++++. + ....++.
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 46799999999865 55555543210 11123479999997 555554454432 1 1245667
Q ss_pred EeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCc--ccHHHHHHHhc-----ccce
Q psy12466 462 PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNG--KSKLYELMTGL-----NIRK 531 (680)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~~l-----~~~~ 531 (680)
+.+|...............+|+|||.+.+...+.. ..-.+.++||+||+|.+.+. .+.....+.+| ....
T Consensus 82 vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~Q 161 (1490)
T PRK09751 82 IRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQ 161 (1490)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCe
Confidence 77777655544434445679999999998654321 11134789999999999754 23333333333 2346
Q ss_pred EEEEeCCCCCCCHHHHHH
Q psy12466 532 RILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 532 rllLTgTP~~n~~~el~s 549 (680)
+|+||||-- ++.++..
T Consensus 162 rIgLSATI~--n~eevA~ 177 (1490)
T PRK09751 162 RIGLSATVR--SASDVAA 177 (1490)
T ss_pred EEEEEeeCC--CHHHHHH
Confidence 899999973 3666654
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=93.41 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=92.0
Q ss_pred ccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHH----------HHhcCCCCCCccceEEEE
Q psy12466 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT----------LLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 369 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~----------~~~~~~~~~~~~~~~LIV 438 (680)
.....|++.|.+.=+.++..+ ..++..|+..++|.|||.|.=.++.. +..-.+ ....++++|+
T Consensus 156 ~~~~~l~~~~~~iQ~qil~~i-----~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~--~~~~~~ilvt 228 (675)
T PHA02653 156 FSKIPLASLQPDVQLKIFEAW-----ISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP--NFIERPIVLS 228 (675)
T ss_pred cccccCCchhHHHHHHHHHHH-----HhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc--ccCCcEEEEE
Confidence 445568887766655555542 24578999999999999885333221 111000 1112479999
Q ss_pred ecc-chHHHHHHHHHHHhCC-----CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccc
Q psy12466 439 TPS-SLTSNWNDEFKKWLGL-----TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHR 512 (680)
Q Consensus 439 ~P~-sll~qW~~E~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~ 512 (680)
+|. .++.|...++.+..+. ..+.+..+....... .......++++.|...... .-.++++||+||||.
T Consensus 229 ~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~-~t~~k~~~Ilv~T~~L~l~-----~L~~v~~VVIDEaHE 302 (675)
T PHA02653 229 LPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELI-NTNPKPYGLVFSTHKLTLN-----KLFDYGTVIIDEVHE 302 (675)
T ss_pred CcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHh-hcccCCCCEEEEeCccccc-----ccccCCEEEcccccc
Confidence 997 6668888888775543 233444443332111 1112245788887543111 123588999999999
Q ss_pred ccCcccHHHHHHHhcc--cceEEEEeCCCC
Q psy12466 513 LKNGKSKLYELMTGLN--IRKRILLSGTPL 540 (680)
Q Consensus 513 ~kn~~s~~~~~l~~l~--~~~rllLTgTP~ 540 (680)
...........++.+. .+..++||||.-
T Consensus 303 r~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 303 HDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred CccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 7544433333343332 235799999984
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.2e-06 Score=88.54 Aligned_cols=143 Identities=20% Similarity=0.238 Sum_probs=97.3
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
-..++|-|...+-|+++-.........+-.+++..+|.|||+. +|-++..+... +-. +=+.+||+|. .|..|-.
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-~v~---~LRavVivPtr~L~~QV~ 232 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-PVK---RLRAVVIVPTRELALQVY 232 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC-Ccc---ceEEEEEeeHHHHHHHHH
Confidence 3568999999999998764333334456688999999999998 45555555443 211 3468999997 6679999
Q ss_pred HHHHHHhCCCCeeEeecCCcchh--hhhhhc-----CCCCEEEEeHHHHHHHHHhhhc---cCceEEEEcCcccccCcc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKA--EDYVYS-----RVSPVLIISYEMLIRAYQTIVD---TEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~vvI~ty~~l~~~~~~l~~---~~~~~vIlDEaH~~kn~~ 517 (680)
++|.+|++...+.+....+.... +..... ...||+|+|...+...+..-.. ....++|+|||.++.+..
T Consensus 233 ~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 233 DTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred HHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHH
Confidence 99999998755544433333322 222111 2348999999999876653222 245689999999996643
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=93.41 Aligned_cols=172 Identities=16% Similarity=0.193 Sum_probs=103.5
Q ss_pred hhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC--CCCccceEEEEecc-chHHHHHHHHHHHhC--CCCeeEee
Q psy12466 391 DLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY--GMPVIRKVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYH 464 (680)
Q Consensus 391 ~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~--~~~~~~~~LIV~P~-sll~qW~~E~~~~~~--~~~v~~~~ 464 (680)
...+....++|++..+|.|||..+.. ++..+...... ..-..-+++.|+|. +|...-.+.+.+-+. +..+.-+.
T Consensus 120 p~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELT 199 (1230)
T KOG0952|consen 120 PVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELT 199 (1230)
T ss_pred hhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEec
Confidence 34456788999999999999999855 44444431110 01112468999995 666555555555444 34555555
Q ss_pred cCCcchhhhhhhcCCCCEEEEeHHHHHH----HH--HhhhccCceEEEEcCcccccCcccHHHHH-----HHhc----cc
Q psy12466 465 VNQKNKAEDYVYSRVSPVLIISYEMLIR----AY--QTIVDTEFDLLICDEGHRLKNGKSKLYEL-----MTGL----NI 529 (680)
Q Consensus 465 ~~~~~~~~~~~~~~~~~vvI~ty~~l~~----~~--~~l~~~~~~~vIlDEaH~~kn~~s~~~~~-----l~~l----~~ 529 (680)
|+....... ....+|++||.+.+.- .. ..| .....+||+||.|.+.........+ ++.. ..
T Consensus 200 GD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l-~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~ 275 (1230)
T KOG0952|consen 200 GDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSAL-FSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSM 275 (1230)
T ss_pred CcchhhHHH---HHhcCEEEecccceeeeeeeeccchhh-hhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhh
Confidence 543322222 3568999999988731 11 111 1246799999999998765544333 2221 33
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhh
Q psy12466 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEE 571 (680)
Q Consensus 530 ~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~ 571 (680)
-+.++||||-- +..| +..||..++....-.|...|.-
T Consensus 276 IRivgLSATlP--N~eD---vA~fL~vn~~~glfsFd~~yRP 312 (1230)
T KOG0952|consen 276 IRIVGLSATLP--NYED---VARFLRVNPYAGLFSFDQRYRP 312 (1230)
T ss_pred eEEEEeeccCC--CHHH---HHHHhcCCCccceeeecccccc
Confidence 46699999953 3444 4567776655555556555553
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.3e-06 Score=87.51 Aligned_cols=98 Identities=17% Similarity=0.354 Sum_probs=68.9
Q ss_pred CCeEEEEECccc-HHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHH----------HHHhhh
Q psy12466 192 ILRVLIVTPSSL-TSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIR----------AYQTIV 258 (680)
Q Consensus 192 ~~~~LIV~P~sl-~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~----------~~~~l~ 258 (680)
-+++||+|-+++ +.||+..|..|.. ...+..|..+.+. ......+|+|++|.|+.. ..+.|.
T Consensus 345 kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~ 419 (776)
T KOG1123|consen 345 KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLR 419 (776)
T ss_pred cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHh
Confidence 358899999888 8999999999973 3455555554433 223557899999999964 345677
Q ss_pred cCCCcEEEEcCCCCCCCCCCCCCccc-cCCCCCCceeccC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGNSPGND-SGIPSLPRKSDSG 297 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~~~~a~-~~l~~~~r~~LTG 297 (680)
...|+++|+||.|.+- ++.++-+ --+.+.+++.||.
T Consensus 420 ~~EWGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTA 456 (776)
T KOG1123|consen 420 GREWGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTA 456 (776)
T ss_pred cCeeeeEEeehhccch---HHHHHHHHHHHHHHhhcccee
Confidence 8889999999999984 3333322 2334445677765
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=83.54 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=108.2
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+-+-|.+|+=..+ +++.+|-+.++|.|||.. +|-++..+..... .-..||++|. -|..|-.+.|
T Consensus 84 PT~IQ~~aiP~~L---------~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~lVLtPtRELA~QI~e~f 149 (476)
T KOG0330|consen 84 PTKIQSEAIPVAL---------GGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFALVLTPTRELAQQIAEQF 149 (476)
T ss_pred Cchhhhhhcchhh---------CCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEEEecCcHHHHHHHHHHH
Confidence 4456888876553 467899999999999987 5667777776432 2358999998 5667777778
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
+.+... +++.++-|.-.............+|+|+|...+.+.... +.-....++|+|||.++-+.+ -...+.+
T Consensus 150 e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~IL 229 (476)
T KOG0330|consen 150 EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYIL 229 (476)
T ss_pred HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHH
Confidence 877544 455555555555544455566788999999999876653 222346789999999997753 4556667
Q ss_pred HhcccceE-EEEeCCCCC
Q psy12466 525 TGLNIRKR-ILLSGTPLQ 541 (680)
Q Consensus 525 ~~l~~~~r-llLTgTP~~ 541 (680)
..+...++ ++.|||.-.
T Consensus 230 k~ip~erqt~LfsATMt~ 247 (476)
T KOG0330|consen 230 KVIPRERQTFLFSATMTK 247 (476)
T ss_pred HhcCccceEEEEEeecch
Confidence 77765554 888888643
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.1e-06 Score=92.78 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=68.3
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCC-CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHH--HHhhhcCCCcEEEEc
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLT-RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA--YQTIVDTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~--~~~l~~~~~~~vI~D 268 (680)
.++|||||... +.||.+.+.++++.. .+..+.++.++.. ...|.++||.++.+. ...+....|++||+|
T Consensus 81 ~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~i~vat~qtl~~~~~l~~~~~~~~~liI~D 153 (442)
T COG1061 81 RSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELE-------PAKVTVATVQTLARRQLLDEFLGNEFGLIIFD 153 (442)
T ss_pred CCEEEEECcHHHHHHHHHHHHHhcCCccccceecCceeccC-------CCcEEEEEhHHHhhhhhhhhhcccccCEEEEE
Confidence 35899999765 689999999998643 3334433332211 147999999999885 455666689999999
Q ss_pred CCCCCCCCCCCCCccccCCCCCC-ceeccCCC
Q psy12466 269 EKSLLKPPSGNSPGNDSGIPSLP-RKSDSGIG 299 (680)
Q Consensus 269 EaH~lKN~~s~~~~a~~~l~~~~-r~~LTG~~ 299 (680)
|+|++-.+..+. .+..+...+ |+.||++.
T Consensus 154 E~Hh~~a~~~~~--~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 154 EVHHLPAPSYRR--ILELLSAAYPRLGLTATP 183 (442)
T ss_pred ccccCCcHHHHH--HHHhhhcccceeeeccCc
Confidence 999998665442 334455555 88888654
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-06 Score=81.87 Aligned_cols=108 Identities=20% Similarity=0.174 Sum_probs=70.0
Q ss_pred CCeEEEEEC-cccHHHHHHHHHHHhCCCC-eeEEeecCCcchh--hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTP-SSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAE--DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P-~sl~~nW~~E~~k~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
.+++||+|| .++..+|.+++.++++... ......++..... ........+|++++|+.+...... ....+++++
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~i 133 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLV 133 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEE
Confidence 467999999 6778999999999986433 2222222222111 112223349999999999887765 445678999
Q ss_pred EEcCCCCCCC-CCCCCCccc-cCC-CCCCceeccCCC
Q psy12466 266 ICDEKSLLKP-PSGNSPGND-SGI-PSLPRKSDSGIG 299 (680)
Q Consensus 266 I~DEaH~lKN-~~s~~~~a~-~~l-~~~~r~~LTG~~ 299 (680)
|+||+|.+.+ ........+ ..+ ...+.+++||+.
T Consensus 134 IiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 134 ILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred EEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 9999999997 333333223 333 355577777654
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=98.01 E-value=5e-06 Score=80.58 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=68.5
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecC------------C-cchhhhcccCCCCEEEEehhHHHHHHHh---
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQ------------K-NKAEDYVYSRVSPVLIISYEMLIRAYQT--- 256 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~V~itsYe~l~~~~~~--- 256 (680)
++|||||. +|+.+|.++|..+.+........... . .............+++++|..+......
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 131 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKK 131 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccc
Confidence 89999997 88899999998887633222111110 0 0011122345577999999999876542
Q ss_pred ----------hhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 257 ----------IVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 257 ----------l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
.....+++||+||||+..+... ++.+........+.|||+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp 182 (184)
T PF04851_consen 132 IDESARRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATP 182 (184)
T ss_dssp ------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-
T ss_pred cccchhhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCc
Confidence 2335689999999999986543 5555557777789998764
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.6e-05 Score=84.48 Aligned_cols=178 Identities=22% Similarity=0.181 Sum_probs=118.4
Q ss_pred CCccccccCcccc--------cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCC
Q psy12466 359 KPLVDVTVDGFLS--------RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGM 429 (680)
Q Consensus 359 ~~~~~~~~p~~l~--------~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~ 429 (680)
.++....+|+.+. ..|.|-|.-+|..-+ ..+.+-++...+++|||+.+ +|-+..+...+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GL--------LeG~nllVVSaTasGKTLIgElAGi~~~l~~g---- 261 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGL--------LEGENLLVVSATASGKTLIGELAGIPRLLSGG---- 261 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhcc--------ccCCceEEEeccCCCcchHHHhhCcHHHHhCC----
Confidence 3455667777764 568899998885432 34677889999999999987 67777766654
Q ss_pred CccceEEEEecc-chHHHHHHHHHHHhCCCCee--EeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhh-hccC
Q psy12466 430 PVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMC--PYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTI-VDTE 501 (680)
Q Consensus 430 ~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~--~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l-~~~~ 501 (680)
+++|.++|. .|..|=.++|.+-+..+... +--|.++-+.. ........||++-||+-+.-....- .-.+
T Consensus 262 ---~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgd 338 (830)
T COG1202 262 ---KKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGD 338 (830)
T ss_pred ---CeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccc
Confidence 369999997 66688888887766543332 33333332222 1233457899999999875433321 1235
Q ss_pred ceEEEEcCcccccCc--ccHHHHHHHhc----ccceEEEEeCCCCCCCHHHHHHHHhh
Q psy12466 502 FDLLICDEGHRLKNG--KSKLYELMTGL----NIRKRILLSGTPLQNDLQEFFYLNDF 553 (680)
Q Consensus 502 ~~~vIlDEaH~~kn~--~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~sll~f 553 (680)
.+.||+||.|.+... ...+--.+.+| .....+.||||- .|+.|+...+..
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a 394 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGA 394 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCC
Confidence 789999999999662 23332233333 446779999995 567888776653
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.2e-05 Score=83.78 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=95.5
Q ss_pred eEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 400 AILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 400 ~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.|=+..+|+|||..- +-++..+... |.. ..+.|+||+||+- |- ++-...+.+|+. +.+++.-|.-.-+....
T Consensus 221 Ica~A~TGsGKTAAF~lPiLERLlYr-Pk~-~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~-I~~~L~vGGL~lk~QE~ 297 (691)
T KOG0338|consen 221 ICACAATGSGKTAAFALPILERLLYR-PKK-VAATRVLVLVPTRELAIQVHSVTKQLAQFTD-ITVGLAVGGLDLKAQEA 297 (691)
T ss_pred hhheecccCCchhhhHHHHHHHHhcC-ccc-CcceeEEEEeccHHHHHHHHHHHHHHHhhcc-ceeeeeecCccHHHHHH
Confidence 444678999999753 3344444433 322 3478999999973 32 556667777766 56666666666666666
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhcc---CceEEEEcCcccccCcc-cHHHHHHHhcccceE--EEEeCCCCCCCHHHHH
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDT---EFDLLICDEGHRLKNGK-SKLYELMTGLNIRKR--ILLSGTPLQNDLQEFF 548 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~---~~~~vIlDEaH~~kn~~-s~~~~~l~~l~~~~r--llLTgTP~~n~~~el~ 548 (680)
......||||.|...+...+..-.++ ...++|+|||.++-... ......+.++.+.+| ++.|||. ...+.||.
T Consensus 298 ~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~ 376 (691)
T KOG0338|consen 298 VLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLA 376 (691)
T ss_pred HHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHH
Confidence 66668899999999997766543333 45689999999985432 122333445544444 9999995 44566665
Q ss_pred HH
Q psy12466 549 YL 550 (680)
Q Consensus 549 sl 550 (680)
++
T Consensus 377 sl 378 (691)
T KOG0338|consen 377 SL 378 (691)
T ss_pred Hh
Confidence 53
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=91.81 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=65.1
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
++||+||+ .|+.||.++|.+|... ..+....++... ....+|+|+||+.+.+....+. ..|++||+||+
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~-------~~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEa 231 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAK-------DTDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDEC 231 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhccccccceeEEecCccc-------CCCCCEEEeeHHHHhhchhhhc-cccCEEEEEch
Confidence 79999996 7789999999998742 222222222211 1346899999999866443222 36899999999
Q ss_pred CCCCCCCCCCCccccCC-CCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGI-PSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l-~~~~r~~LTG~~ 299 (680)
|++... .....+..+ ++.+++.||++.
T Consensus 232 H~~~~~--~~~~il~~~~~~~~~lGLTATp 259 (501)
T PHA02558 232 HLFTGK--SLTSIITKLDNCKFKFGLTGSL 259 (501)
T ss_pred hcccch--hHHHHHHhhhccceEEEEeccC
Confidence 999753 233444555 466788888764
|
|
| >KOG1513|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=81.96 Aligned_cols=257 Identities=18% Similarity=0.264 Sum_probs=140.9
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhcc-CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe-c
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLAS-LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT-P 440 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~-~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~-P 440 (680)
...+|..-...|-.-|+++|-|.++.-..... ...-|.+|.|-.|.||-.++..+|..-.-+|. ++.|.+- .
T Consensus 254 qlalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR------KrAlW~SVS 327 (1300)
T KOG1513|consen 254 QLALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR------KRALWFSVS 327 (1300)
T ss_pred EEecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc------ceeEEEEec
Confidence 34556544567888899999998875322222 23457788899999997776555544333332 3456554 4
Q ss_pred cchHHHHHHHHHHHhCCCCeeEeecCCc--chhh-hhhhcCCCCEEEEeHHHHHHH-----------HHhhhc---cCc-
Q psy12466 441 SSLTSNWNDEFKKWLGLTRMCPYHVNQK--NKAE-DYVYSRVSPVLIISYEMLIRA-----------YQTIVD---TEF- 502 (680)
Q Consensus 441 ~sll~qW~~E~~~~~~~~~v~~~~~~~~--~~~~-~~~~~~~~~vvI~ty~~l~~~-----------~~~l~~---~~~- 502 (680)
+-|...-.+++...-. -.+.++...+- ..+. ..+..-...|+++||..+.-. +..|.+ ..|
T Consensus 328 sDLKfDAERDL~DigA-~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe 406 (1300)
T KOG1513|consen 328 SDLKFDAERDLRDIGA-TGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE 406 (1300)
T ss_pred cccccchhhchhhcCC-CCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc
Confidence 5666777777776532 12322222211 1111 111222456999999988532 111111 123
Q ss_pred eEEEEcCcccccC-------cccHHHHHHHhc----ccceEEEEeCCCCCCCHHHHHHHHhhh--CCC-CCCCHHHHHHH
Q psy12466 503 DLLICDEGHRLKN-------GKSKLYELMTGL----NIRKRILLSGTPLQNDLQEFFYLNDFA--NPG-VLGSLREFRKN 568 (680)
Q Consensus 503 ~~vIlDEaH~~kn-------~~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~sll~fl--~p~-~l~~~~~F~~~ 568 (680)
.+||+||||+.|| ..+++.+.+..| ...+.+..|||--.. +.++..|.++- .++ .|+++.+|...
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE-PrNMaYM~RLGlWGegtaf~eF~eFi~A 485 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE-PRNMAYMVRLGLWGEGTAFPEFEEFIHA 485 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC-cchhhhhhhhccccCCCcCccHHHHHHH
Confidence 5899999999998 345566665444 566778899996442 33333332221 122 35555555554
Q ss_pred hhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcc-ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh
Q psy12466 569 FEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG-FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA 647 (680)
Q Consensus 569 f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~ 647 (680)
.+. .+. ++-+ ....-..++. |+-|. + .+..-...+-.|+||++=+.+|+.-.+.+...+
T Consensus 486 vEk----RGv-GAME---------IVAMDMK~rGmYiARQ----L--SFkgVsFrieEv~ls~eF~k~Yn~a~~LW~ea~ 545 (1300)
T KOG1513|consen 486 VEK----RGV-GAME---------IVAMDMKLRGMYIARQ----L--SFKGVSFRIEEVPLSKEFRKVYNRAAELWAEAL 545 (1300)
T ss_pred HHh----cCC-ceee---------eeehhhhhhhhhhhhh----c--cccCceEEEEecccCHHHHHHHHHHHHHHHHHH
Confidence 433 111 1100 0001111111 22221 1 255567788889999999999998766554443
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.1e-05 Score=96.60 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI 266 (680)
..++|||||+ .|..||.++|+++++.. ++..+.+.......... ...++|+++|++.+..+.. .+.-..|++||
T Consensus 58 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~-~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liV 136 (773)
T PRK13766 58 GGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAEL-WEKAKVIVATPQVIENDLIAGRISLEDVSLLI 136 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 4689999998 78899999999998532 55566655433222222 2357899999999976542 23335699999
Q ss_pred EcCCCCCCCCCCCCCccccCCC---CCCceeccCCC
Q psy12466 267 CDEKSLLKPPSGNSPGNDSGIP---SLPRKSDSGIG 299 (680)
Q Consensus 267 ~DEaH~lKN~~s~~~~a~~~l~---~~~r~~LTG~~ 299 (680)
+||||++.+..+..+.+-.... ..+.++||++.
T Consensus 137 vDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP 172 (773)
T PRK13766 137 FDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASP 172 (773)
T ss_pred EECCccccccccHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 9999999876544332222222 23367777653
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00023 Score=81.15 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=107.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.-|.|..++-.++. ++..+....+|+|||.. .|-++..+....... ..+.||++|+ -|..|-.+++
T Consensus 52 pt~IQ~~~IP~~l~---------g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~---~~~aLil~PTRELA~Qi~~~~ 119 (513)
T COG0513 52 PTPIQLAAIPLILA---------GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERK---YVSALILAPTRELAVQIAEEL 119 (513)
T ss_pred CCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHhcccccC---CCceEEECCCHHHHHHHHHHH
Confidence 45789888876643 47788889999999987 455555544321111 1118999998 6778988888
Q ss_pred HHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHH
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELM 524 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l 524 (680)
.++.. ..++..+.|...............+|+|.|...+...+.. +.-....++|+|||.++-+. .......+
T Consensus 120 ~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~ 199 (513)
T COG0513 120 RKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKIL 199 (513)
T ss_pred HHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHH
Confidence 88875 3455555555443333233333589999999998765543 33446789999999998664 33344455
Q ss_pred Hhccc-ceEEEEeCCCCCCCHHHHH
Q psy12466 525 TGLNI-RKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 525 ~~l~~-~~rllLTgTP~~n~~~el~ 548 (680)
..+.. ...++.|||.-. ...++.
T Consensus 200 ~~~p~~~qtllfSAT~~~-~i~~l~ 223 (513)
T COG0513 200 KALPPDRQTLLFSATMPD-DIRELA 223 (513)
T ss_pred HhCCcccEEEEEecCCCH-HHHHHH
Confidence 55543 566999999877 455553
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.6e-05 Score=83.58 Aligned_cols=165 Identities=21% Similarity=0.211 Sum_probs=113.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||=|.+++..++. +..++.-..+|-||++.-- +-.+...| .+|||-|. +|+..-.+.+
T Consensus 17 ~FR~gQ~evI~~~l~---------g~d~lvvmPTGgGKSlCyQ--iPAll~~G--------~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 17 SFRPGQQEIIDALLS---------GKDTLVVMPTGGGKSLCYQ--IPALLLEG--------LTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred ccCCCHHHHHHHHHc---------CCcEEEEccCCCCcchHhh--hHHHhcCC--------CEEEECchHHHHHHHHHHH
Confidence 478899999988864 3789999999999998532 22222233 49999997 8888888888
Q ss_pred HHHhCCCCeeEeecCCcchh----hhhhhcCCCCEEEEeHHHHHHH--HHhhhccCceEEEEcCcccccCc-------cc
Q psy12466 452 KKWLGLTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRA--YQTIVDTEFDLLICDEGHRLKNG-------KS 518 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~--~~~l~~~~~~~vIlDEaH~~kn~-------~s 518 (680)
...- ..+...+..-.... ......+..+++..+.+.+... .+.+...+..+++|||||.+..- -.
T Consensus 78 ~~~G--i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 78 EAAG--IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred HHcC--ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 8742 34444433322211 1223345678999999988653 45567888999999999998432 22
Q ss_pred HHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 519 KLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 519 ~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
........+...-+++||||--..--.|+...|..-.+..
T Consensus 156 ~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~ 195 (590)
T COG0514 156 RLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANI 195 (590)
T ss_pred HHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcce
Confidence 3333344445557899999998888888888877766543
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00021 Score=83.56 Aligned_cols=125 Identities=20% Similarity=0.291 Sum_probs=92.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+...|+-=...+. .+...-+...+|+|||.-.+.....+..++ ++++||+|+ .|+.|-.+.+
T Consensus 82 ~~ws~QR~WakR~~---------rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-------kr~yii~PT~~Lv~Q~~~kl 145 (1187)
T COG1110 82 RPWSAQRVWAKRLV---------RGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-------KRVYIIVPTTTLVRQVYERL 145 (1187)
T ss_pred CchHHHHHHHHHHH---------cCCceEEEcCCCCchhHHHHHHHHHHHhcC-------CeEEEEecCHHHHHHHHHHH
Confidence 45566764443332 234555667899999998887777777766 369999998 5669999999
Q ss_pred HHHhCCCC---eeE-eecCCcchh----hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 452 KKWLGLTR---MCP-YHVNQKNKA----EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 452 ~~~~~~~~---v~~-~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
+++..... +.+ ||+.-..+. ......++++|+|||-+.+.++.+.+...+||+|++|.+..+
T Consensus 146 ~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 146 KKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 99884322 222 776643332 233456789999999999999999999999999999999875
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00032 Score=83.67 Aligned_cols=158 Identities=19% Similarity=0.232 Sum_probs=106.5
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
+.-.|-++|++++.-+- .+.+.+++..+|.|||+.+-.++......+. ++....|- +|..|=.
T Consensus 116 ~~F~LD~fQ~~a~~~Le---------r~esVlV~ApTssGKTvVaeyAi~~al~~~q-------rviYTsPIKALsNQKy 179 (1041)
T COG4581 116 YPFELDPFQQEAIAILE---------RGESVLVCAPTSSGKTVVAEYAIALALRDGQ-------RVIYTSPIKALSNQKY 179 (1041)
T ss_pred CCCCcCHHHHHHHHHHh---------CCCcEEEEccCCCCcchHHHHHHHHHHHcCC-------ceEeccchhhhhhhHH
Confidence 44568899999997763 3588999999999999999877776666553 48999995 7778888
Q ss_pred HHHHHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCccc-HHHH-
Q psy12466 449 DEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNGKS-KLYE- 522 (680)
Q Consensus 449 ~E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~~s-~~~~- 522 (680)
.+|..-+++. .+.++.|+..- ....+++++|-+.++...-.- .-.....||+||.|.+....- ..+.
T Consensus 180 rdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 180 RDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred HHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHH
Confidence 8887776632 33444444321 235678888888887643221 123567899999999976432 2333
Q ss_pred HHHhccc-ceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 523 LMTGLNI-RKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 523 ~l~~l~~-~~rllLTgTP~~n~~~el~sll~ 552 (680)
.+..+.. -..++||||- .+..|+-.-+.
T Consensus 253 ~Ii~lP~~v~~v~LSATv--~N~~EF~~Wi~ 281 (1041)
T COG4581 253 VIILLPDHVRFVFLSATV--PNAEEFAEWIQ 281 (1041)
T ss_pred HHHhcCCCCcEEEEeCCC--CCHHHHHHHHH
Confidence 3333333 3679999995 24455544444
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00026 Score=71.17 Aligned_cols=72 Identities=26% Similarity=0.358 Sum_probs=45.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhcC-CCCCCccceEEEEecc-chHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQG-PYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~~-~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
+|.+.|++|+..++. ..+ +++.-.+|+|||.+..+++..+.... .......+++||++|+ ..+.+-.+
T Consensus 1 ~ln~~Q~~Ai~~~~~---------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~ 71 (236)
T PF13086_consen 1 KLNESQREAIQSALS---------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILE 71 (236)
T ss_dssp ---HHHHHHHHHHCT---------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHH
Confidence 477899999977643 245 88899999999988888887773210 0000113569999997 56677666
Q ss_pred HHHH
Q psy12466 450 EFKK 453 (680)
Q Consensus 450 E~~~ 453 (680)
.+.+
T Consensus 72 ~l~~ 75 (236)
T PF13086_consen 72 RLKK 75 (236)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 6666
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00033 Score=82.44 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=75.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~ 448 (680)
.++||+.+.+..+.- ..|.|....+|.|||++++..+......|. .++||+|+..+ ..|.
T Consensus 76 g~~p~~vQl~~~~~l---------~~G~Iaem~TGeGKTL~a~lp~~l~al~G~-------~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 76 GMRPYDVQLIGALVL---------HEGNIAEMQTGEGKTLTATMPLYLNALEGK-------GVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred CCCCchHHHHhHHHH---------cCCceeeecCCCcchHHHHHHHHHHHHcCC-------CeEEEeCCHHHHHHHHHHH
Confidence 467777666655532 145588899999999987654443333332 48999998544 4566
Q ss_pred HHHHHHhCCCCeeEeecCCc-chhhhhhhcCCCCEEEEeHHHH-----HHHHH----hhhccCceEEEEcCcccc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQK-NKAEDYVYSRVSPVLIISYEML-----IRAYQ----TIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~vvI~ty~~l-----~~~~~----~l~~~~~~~vIlDEaH~~ 513 (680)
..+.++++ +++.++.+... ...... ....+|+++|...+ +.... ......+.++|+|||+.+
T Consensus 140 ~~l~~~lG-l~v~~i~g~~~~~~~r~~--~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsi 211 (790)
T PRK09200 140 GQVYEFLG-LTVGLNFSDIDDASEKKA--IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSI 211 (790)
T ss_pred HHHHhhcC-CeEEEEeCCCCcHHHHHH--hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccc
Confidence 66666654 44555544433 222222 23478999996555 33221 123356889999999987
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00055 Score=75.14 Aligned_cols=159 Identities=23% Similarity=0.285 Sum_probs=103.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCC-----CCCccceEEEEecc-chH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPY-----GMPVIRKVLIVTPS-SLT 444 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~-----~~~~~~~~LIV~P~-sll 444 (680)
....|+|+-++.-+ ..+++.+.+..+|.|||..= +-++..+...++. +.+...+.||++|+ .|.
T Consensus 95 ~~ptpvQk~sip~i---------~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~ 165 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII---------SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELV 165 (482)
T ss_pred cCCCcceeecccee---------ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHh
Confidence 45678999888544 35677888899999999874 3355555554331 11123468999997 788
Q ss_pred HHHHHHHHHHhCCCCe--eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccC---cc
Q psy12466 445 SNWNDEFKKWLGLTRM--CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKN---GK 517 (680)
Q Consensus 445 ~qW~~E~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn---~~ 517 (680)
.|=.+|..+|.....+ +...+..............++++++|...+...++. +.-....++|||||.++-. ..
T Consensus 166 ~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~ 245 (482)
T KOG0335|consen 166 DQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFE 245 (482)
T ss_pred hHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcccc
Confidence 9999999999865433 333333333333334456799999999998765543 2222355999999998744 22
Q ss_pred cHHHHHHHhc-----ccceEEEEeCCC
Q psy12466 518 SKLYELMTGL-----NIRKRILLSGTP 539 (680)
Q Consensus 518 s~~~~~l~~l-----~~~~rllLTgTP 539 (680)
....+.+... ....-++.|||-
T Consensus 246 p~Ir~iv~~~~~~~~~~~qt~mFSAtf 272 (482)
T KOG0335|consen 246 PQIRKIVEQLGMPPKNNRQTLLFSATF 272 (482)
T ss_pred ccHHHHhcccCCCCccceeEEEEeccC
Confidence 3333333333 234458888885
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00031 Score=81.60 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=72.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHH---HH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSN---WN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~q---W~ 448 (680)
.++||+.+.+..+.- ..|.|.-..+|.|||+.+...+......+. .++||+|+. |..| |.
T Consensus 54 g~~p~~vQlig~~~l---------~~G~Iaem~TGeGKTLva~lpa~l~aL~G~-------~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 54 GMRPFDVQLIGGIAL---------HKGKIAEMKTGEGKTLTATLPAYLNALTGK-------GVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred CCCccchHHhhhhhh---------cCCceeeecCCCccHHHHHHHHHHHHHhCC-------CEEEEcCCHHHHHHHHHHH
Confidence 366776666555531 145577799999999976543322222221 389999985 4444 44
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH---------HhhhccCceEEEEcCccccc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY---------QTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~---------~~l~~~~~~~vIlDEaH~~k 514 (680)
..+.++++ +++.+..+........... ..+|++.|...+.-++ +.+....+.++|+||+|++.
T Consensus 118 ~~l~~~LG-Lsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 118 GQVYRFLG-LSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred HHHhccCC-CeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 44444444 4555554443332222222 3689999988762211 12334568999999999873
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0008 Score=81.43 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=47.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
-+.||+|.+.+..+.+.+. .+..+++-..+|+|||+..+.-+......+ ++++|.+|+ .|..||..
T Consensus 244 ~~~r~~Q~~~~~~i~~~~~-----~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~-------~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 244 LEYRPEQLKLAELVLDQLT-----HSEKSLIEAPTGTGKTLGYLLPALYYAITE-------KPVVISTNTKVLQSQLLE 310 (850)
T ss_pred CccCHHHHHHHHHHHHHhc-----cCCcEEEECCCCCchhHHHHHHHHHHhcCC-------CeEEEEeCcHHHHHHHHH
Confidence 3589999998887777542 345677778999999998766554433321 369999997 56788855
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=70.20 Aligned_cols=75 Identities=25% Similarity=0.207 Sum_probs=47.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
.||.|.+-...+++.+ ..++.+++-..+|+|||+..+..+.......+... ...++++++++ ++..+=..+++
T Consensus 9 ~r~~Q~~~m~~v~~~~-----~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 9 PYPIQYEFMEELKRVL-----DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCHHHHHHHHHHHHHH-----HcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHH
Confidence 4899999888877753 24567899999999999998776644333222100 01246777775 34455455555
Q ss_pred HH
Q psy12466 453 KW 454 (680)
Q Consensus 453 ~~ 454 (680)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 43
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=70.20 Aligned_cols=75 Identities=25% Similarity=0.207 Sum_probs=47.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
.||.|.+-...+++.+ ..++.+++-..+|+|||+..+..+.......+... ...++++++++ ++..+=..+++
T Consensus 9 ~r~~Q~~~m~~v~~~~-----~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 9 PYPIQYEFMEELKRVL-----DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCHHHHHHHHHHHHHH-----HcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHH
Confidence 4899999888877753 24567899999999999998776644333222100 01246777775 34455455555
Q ss_pred HH
Q psy12466 453 KW 454 (680)
Q Consensus 453 ~~ 454 (680)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 43
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00091 Score=79.82 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=79.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHHhCC---CCeeEeecCCcchh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKWLGL---TRMCPYHVNQKNKA 471 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~~~~---~~v~~~~~~~~~~~ 471 (680)
.+...|+..++|.|||.+....+...... .++++|+.|.-++ .|-.+.+.+..+. ..+. |......
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG-y~vr~~~-- 85 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPGI-------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG-YRVRGEN-- 85 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhcc-------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE-EEEcccc--
Confidence 35789999999999999986655433211 1369999998544 6666666544432 1111 1111111
Q ss_pred hhhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCccc-ccCcccH--HHHHH-Hhcc-cceEEEEeCCCCCCCH
Q psy12466 472 EDYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHR-LKNGKSK--LYELM-TGLN-IRKRILLSGTPLQNDL 544 (680)
Q Consensus 472 ~~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~-~kn~~s~--~~~~l-~~l~-~~~rllLTgTP~~n~~ 544 (680)
.......|+++|...+.+.+.. ..-.++++||+||+|. .-+.+-. ..+.+ ..++ ....++||||.-...+
T Consensus 86 ---~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l 161 (819)
T TIGR01970 86 ---KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERL 161 (819)
T ss_pred ---ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHH
Confidence 1122467999999988765442 1123689999999994 4333221 11222 2233 3356999999865443
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00081 Score=80.34 Aligned_cols=135 Identities=20% Similarity=0.212 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHHhCC---CCeeEeecCCcchhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKWLGL---TRMCPYHVNQKNKAE 472 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~~~~---~~v~~~~~~~~~~~~ 472 (680)
+...|+..++|.|||.+....+... ... .++++|++|.-++ .|-.+.+.+..+. ..+.... .....
T Consensus 20 ~~~vvv~A~TGSGKTt~~pl~lL~~--~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v-r~~~~-- 89 (812)
T PRK11664 20 APQVLLKAPTGAGKSTWLPLQLLQH--GGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM-RAESK-- 89 (812)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHc--CCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe-cCccc--
Confidence 4678999999999999876444321 111 1369999998544 6666666554432 1121111 11111
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccc-cCcccHH---HHHHHhcc-cceEEEEeCCCCCCCH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRL-KNGKSKL---YELMTGLN-IRKRILLSGTPLQNDL 544 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~-kn~~s~~---~~~l~~l~-~~~rllLTgTP~~n~~ 544 (680)
......|+++|...+.+.... ..-..+++||+||+|.. -+.+-.. .+.+..++ ....++||||.-...+
T Consensus 90 ---~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l 164 (812)
T PRK11664 90 ---VGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRL 164 (812)
T ss_pred ---cCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHH
Confidence 112346999999988765432 11246899999999962 2222111 11222333 3356999999865433
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00047 Score=79.93 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=92.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
-.|-.||++|+.-|. .+...++|.-+-.|||+.|=..++.....+ .|++.-.|- .|-.|=.++
T Consensus 296 FelD~FQk~Ai~~le---------rg~SVFVAAHTSAGKTvVAEYAialaq~h~-------TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLE---------RGDSVFVAAHTSAGKTVVAEYAIALAQKHM-------TRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred CCccHHHHHHHHHHH---------cCCeEEEEecCCCCcchHHHHHHHHHHhhc-------cceEecchhhhhccchHHH
Confidence 457789999997663 357799999999999999744443332222 357888885 555777888
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhc--cCceEEEEcCcccccCcc-cHHHHHHHhc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICDEGHRLKNGK-SKLYELMTGL 527 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~--~~~~~vIlDEaH~~kn~~-s~~~~~l~~l 527 (680)
|+.-+++.. ++.|+..- ......+|+|-+.++...-.-.. ...+.||+||+|++.+.. .-.+..+.-+
T Consensus 360 Fk~tF~Dvg--LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIM 430 (1248)
T KOG0947|consen 360 FKETFGDVG--LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIM 430 (1248)
T ss_pred HHHhccccc--eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeee
Confidence 988887754 44544322 23578999999999874322111 237789999999996532 2222222222
Q ss_pred ccc--eEEEEeCCC
Q psy12466 528 NIR--KRILLSGTP 539 (680)
Q Consensus 528 ~~~--~rllLTgTP 539 (680)
-.+ ..++||||-
T Consensus 431 lP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 431 LPRHVNFILLSATV 444 (1248)
T ss_pred ccccceEEEEeccC
Confidence 222 237777773
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.001 Score=72.23 Aligned_cols=151 Identities=20% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCCceEEEcCCCCChHHHHHHH-HHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHH---HhCCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIAL-IWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKK---WLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aial-i~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~---~~~~~~v~~~~~~~~~~ 470 (680)
.+...+-+.-+|+|||+.-+-- +..+....+..+ ..-.+|||||+ -|..|-..|.++ +.+...+.+.-|.....
T Consensus 118 ~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~ 196 (543)
T KOG0342|consen 118 EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS 196 (543)
T ss_pred CCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch
Confidence 3457888899999999874332 233332222111 12348999998 565777666554 44455555555544444
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHHhhhc---cCceEEEEcCcccccCc--ccHHHHHHHhcc-cceEEEEeCCCCCCCH
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQTIVD---TEFDLLICDEGHRLKNG--KSKLYELMTGLN-IRKRILLSGTPLQNDL 544 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~~l~~---~~~~~vIlDEaH~~kn~--~s~~~~~l~~l~-~~~rllLTgTP~~n~~ 544 (680)
.+........+++|+|...+...++.-.. ..-+++|+|||.++-.. .-..-+.+..+. .+..++.|||- ...+
T Consensus 197 ~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~-~~kV 275 (543)
T KOG0342|consen 197 VEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQ-PSKV 275 (543)
T ss_pred HHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCC-cHHH
Confidence 33333334889999999999776553222 23468999999998543 233344444443 34459999995 2334
Q ss_pred HHHH
Q psy12466 545 QEFF 548 (680)
Q Consensus 545 ~el~ 548 (680)
.++.
T Consensus 276 ~~l~ 279 (543)
T KOG0342|consen 276 KDLA 279 (543)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0018 Score=74.78 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=46.1
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL 455 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~ 455 (680)
|.+-..++.+.+ ..+...++-..+|+|||+..+.-+........ .+++||++|+ .|..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al-----~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-----~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSL-----RQKRIGMLEASTGVGKTLAMIMAALTMLKERP-----DQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHH-----hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-----CceEEEECCcHHHHHHHHHHHHHHH
Confidence 666666666653 23456677789999999987665433332211 1469999997 67799988877655
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=75.30 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=72.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHH---HHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTS---NWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~---qW~ 448 (680)
..+|-|..|+--++ .|.|.-..+|.|||+++...+......+ ..++||+|+. |.. +|.
T Consensus 103 ~p~~VQ~~~~~~ll-----------~G~Iae~~TGeGKTla~~lp~~~~al~G-------~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 103 RHFDVQLMGGLALL-----------SGRLAEMQTGEGKTLTATLPAGTAALAG-------LPVHVITVNDYLAERDAELM 164 (656)
T ss_pred CCChHHHHHHHHHh-----------CCCeeeeeCCCCcHHHHHHHHHHHhhcC-------CeEEEEcCcHHHHHHHHHHH
Confidence 34556777775553 2347789999999999765554443333 2599999984 444 455
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH-----H-----------------------hhhcc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY-----Q-----------------------TIVDT 500 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~-----~-----------------------~l~~~ 500 (680)
..+-++++ +++.+..+........ .....+|++.|-..|.-++ . .....
T Consensus 165 ~~l~~~lG-lsv~~i~gg~~~~~r~--~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 165 RPLYEALG-LTVGCVVEDQSPDERR--AAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHhhcC-CEEEEEeCCCCHHHHH--HHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 55555555 3444444433322222 2235688888866553221 1 12234
Q ss_pred CceEEEEcCcccc
Q psy12466 501 EFDLLICDEGHRL 513 (680)
Q Consensus 501 ~~~~vIlDEaH~~ 513 (680)
.++++|+||+..+
T Consensus 242 ~~~~aIvDEvDSi 254 (656)
T PRK12898 242 GLHFAIVDEADSV 254 (656)
T ss_pred ccceeEeecccce
Confidence 6889999999865
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00084 Score=79.26 Aligned_cols=139 Identities=20% Similarity=0.268 Sum_probs=85.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~~ 449 (680)
|+|||.+.+--+.. +.|.|.-..+|.|||+.++.-+......+ ++++||+|+. |. .+|..
T Consensus 93 ~tp~qvQ~I~~i~l---------~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------~~v~IVTpTrELA~Qdae~m~ 156 (970)
T PRK12899 93 MVPYDVQILGAIAM---------HKGFITEMQTGEGKTLTAVMPLYLNALTG-------KPVHLVTVNDYLAQRDCEWVG 156 (970)
T ss_pred CChHHHHHhhhhhc---------CCCeEEEeCCCCChHHHHHHHHHHHHhhc-------CCeEEEeCCHHHHHHHHHHHH
Confidence 78999988876643 35677779999999998754333222222 1378999974 44 56777
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHH-HHHHHh---------hhccCceEEEEcCcccccCcccH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-IRAYQT---------IVDTEFDLLICDEGHRLKNGKSK 519 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l-~~~~~~---------l~~~~~~~vIlDEaH~~kn~~s~ 519 (680)
.+.++++ +++....+........... ..+|+++|...+ ...... .....+.++|+|||..+--
T Consensus 157 ~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi---- 229 (970)
T PRK12899 157 SVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI---- 229 (970)
T ss_pred HHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh----
Confidence 7777765 4554444433322222122 478999998887 332221 1123578999999987521
Q ss_pred HHHHHHhcccceEEEEeCCCCCC
Q psy12466 520 LYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 520 ~~~~l~~l~~~~rllLTgTP~~n 542 (680)
-.++.-+++||.+-..
T Consensus 230 -------DEArTPLIISg~~~~~ 245 (970)
T PRK12899 230 -------DEARTPLIISGPGEKH 245 (970)
T ss_pred -------hccCCceeeeCCCccc
Confidence 1334447788776433
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0021 Score=69.51 Aligned_cols=135 Identities=18% Similarity=0.249 Sum_probs=85.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHH-hcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~-~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+-|-|..++-.++. +.-...-..+|+|||+.-+.=+..+. .......|.-=-.|||.|+ -|..|-.+
T Consensus 27 ~~mTpVQa~tIPlll~---------~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~ 97 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK---------NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE 97 (567)
T ss_pred cccCHHHHhhhHHHhc---------CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH
Confidence 3477889988877764 35677778999999998655443333 3222222211136999997 44444443
Q ss_pred ---HHHHHhCCCCeeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh----hhccCceEEEEcCcccccC
Q psy12466 450 ---EFKKWLGLTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT----IVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 450 ---E~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~----l~~~~~~~vIlDEaH~~kn 515 (680)
.|..+++.+....+-|......+ ........+|+|.|...+...+.. +.-....++|+|||.++-.
T Consensus 98 V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 98 VAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 44445566666666555433322 222334678999999988766554 4445688999999999844
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00067 Score=67.45 Aligned_cols=145 Identities=23% Similarity=0.343 Sum_probs=70.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
+-..|..+++.|.+. .-.++.-..|+|||+.|++.+..+...+. .++++|+-|..-...+ + -
T Consensus 5 ~~~~Q~~~~~al~~~---------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-----~~kiii~Rp~v~~~~~---l-G 66 (205)
T PF02562_consen 5 KNEEQKFALDALLNN---------DLVIVNGPAGTGKTFLALAAALELVKEGE-----YDKIIITRPPVEAGED---L-G 66 (205)
T ss_dssp -SHHHHHHHHHHHH----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS------SEEEEEE-S--TT--------
T ss_pred CCHHHHHHHHHHHhC---------CeEEEECCCCCcHHHHHHHHHHHHHHhCC-----CcEEEEEecCCCCccc---c-c
Confidence 446899999888742 56788889999999999999988777765 3567777775422222 1 1
Q ss_pred HhCCC---CeeEee-----c----CCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHH
Q psy12466 454 WLGLT---RMCPYH-----V----NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLY 521 (680)
Q Consensus 454 ~~~~~---~v~~~~-----~----~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~ 521 (680)
|.|+. +...+. . ......... .....|-+.+...++- ......+||+||||++. .....
T Consensus 67 flpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~--~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t--~~~~k 137 (205)
T PF02562_consen 67 FLPGDLEEKMEPYLRPIYDALEELFGKEKLEEL--IQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLT--PEELK 137 (205)
T ss_dssp SS---------TTTHHHHHHHTTTS-TTCHHHH--HHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG----HHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHH--hhcCeEEEEehhhhcC-----ccccceEEEEecccCCC--HHHHH
Confidence 11110 000000 0 000011111 1133455555443321 12345899999999873 34555
Q ss_pred HHHHhcccceEEEEeCCCCCCCHH
Q psy12466 522 ELMTGLNIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 522 ~~l~~l~~~~rllLTgTP~~n~~~ 545 (680)
..+.++....+++++|-|.|.+..
T Consensus 138 ~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 138 MILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp HHHTTB-TT-EEEEEE--------
T ss_pred HHHcccCCCcEEEEecCceeecCC
Confidence 567778888999999999876543
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0025 Score=66.90 Aligned_cols=184 Identities=18% Similarity=0.122 Sum_probs=113.2
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
.-.+.||-|+++++..+. +...+|...+|-||++.-- +-.+...|- .|||||. +|+..-.
T Consensus 91 ~lekfrplq~~ain~~ma---------~ed~~lil~tgggkslcyq--lpal~adg~--------alvi~plislmedqi 151 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATMA---------GEDAFLILPTGGGKSLCYQ--LPALCADGF--------ALVICPLISLMEDQI 151 (695)
T ss_pred hHHhcChhHHHHhhhhhc---------cCceEEEEeCCCccchhhh--hhHHhcCCc--------eEeechhHHHHHHHH
Confidence 346789999999987643 4668899999999997531 112223332 7999997 7776655
Q ss_pred HHHHHHhCCCCeeEeecCCc-chhhh-----hhhcCCCCEEEEeHHHHHHHHH-------hhhccCceEEEEcCcccccC
Q psy12466 449 DEFKKWLGLTRMCPYHVNQK-NKAED-----YVYSRVSPVLIISYEMLIRAYQ-------TIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~-~~~~~-----~~~~~~~~vvI~ty~~l~~~~~-------~l~~~~~~~vIlDEaH~~kn 515 (680)
-.++...-+ ...+..... ..... .+....+.++.+|.+.+.+... .+....|.++-+||+|.+..
T Consensus 152 l~lkqlgi~--as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsq 229 (695)
T KOG0353|consen 152 LQLKQLGID--ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQ 229 (695)
T ss_pred HHHHHhCcc--hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhh
Confidence 556554221 112222222 22111 1123456688888888765432 24446789999999998732
Q ss_pred ------cccHH-HHHHHhcccceEEEEeCCCCCCCHHHHHHHHhh----------hCCCC-------CCCHHHHHHHhhh
Q psy12466 516 ------GKSKL-YELMTGLNIRKRILLSGTPLQNDLQEFFYLNDF----------ANPGV-------LGSLREFRKNFEE 571 (680)
Q Consensus 516 ------~~s~~-~~~l~~l~~~~rllLTgTP~~n~~~el~sll~f----------l~p~~-------l~~~~~F~~~f~~ 571 (680)
++.+. .-.-++++....++||||.-.+-+.|.-.++.. -+|+. -++.++|.+....
T Consensus 230 wghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k 309 (695)
T KOG0353|consen 230 WGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAK 309 (695)
T ss_pred hCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHH
Confidence 12222 222245577778999999999988887766543 23333 2456677777766
Q ss_pred hhh
Q psy12466 572 PIL 574 (680)
Q Consensus 572 ~i~ 574 (680)
.|.
T Consensus 310 ~i~ 312 (695)
T KOG0353|consen 310 LIK 312 (695)
T ss_pred Hhc
Confidence 554
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0013 Score=72.16 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=96.0
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC-CCCccceEEEEecc-chHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY-GMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~-~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
.-|..++--++ .++-.++-..+|.|||+.-+. ++..+....+. .+...-=.|||+|+ -|..|-.+-++
T Consensus 162 sVQkq~IP~lL---------~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~q 232 (708)
T KOG0348|consen 162 SVQKQAIPVLL---------EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQ 232 (708)
T ss_pred hHhhcchhhhh---------cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHH
Confidence 35666665553 257789999999999998544 55555544321 01011126999997 67788888888
Q ss_pred HHhCCCCeeE---eecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccC-----cccHHH
Q psy12466 453 KWLGLTRMCP---YHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKN-----GKSKLY 521 (680)
Q Consensus 453 ~~~~~~~v~~---~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn-----~~s~~~ 521 (680)
+.......++ +-|..+.+.+........+|+|.|...+...+.. +...+...||+|||.++.. .-++..
T Consensus 233 KLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 233 KLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred HHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 8764433322 2233333333333445688999999999776543 3333567899999999843 234444
Q ss_pred HHHHhc---c--------cceEEEEeCCCC
Q psy12466 522 ELMTGL---N--------IRKRILLSGTPL 540 (680)
Q Consensus 522 ~~l~~l---~--------~~~rllLTgTP~ 540 (680)
+++..+ . ..-.++||||--
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATLt 342 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATLT 342 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhhH
Confidence 555332 1 123589999963
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00098 Score=79.21 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=99.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCC-ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLE-GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~-g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...+++|..+++...+. .... -.+|..++|.|||..++.++......+. ....+++.|.|- +++.+-.+
T Consensus 194 ~~~~~~~~~~~~~~~~~------~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---~~~~r~i~vlP~~t~ie~~~~ 264 (733)
T COG1203 194 HEGYELQEKALELILRL------EKRSLLVVLEAPTGYGKTEASLILALALLDEKI---KLKSRVIYVLPFRTIIEDMYR 264 (733)
T ss_pred chhhHHHHHHHHHHHhc------ccccccEEEEeCCCCChHHHHHHHHHHHhhccc---cccceEEEEccHHHHHHHHHH
Confidence 34588999999888663 2233 7899999999999999998887776631 123578888886 67788888
Q ss_pred HHHHHhCCCCeeEe--ecCCcchhhhhhhc---------------CCCCEEEEeHHHHHHH-----HHhhhccCceEEEE
Q psy12466 450 EFKKWLGLTRMCPY--HVNQKNKAEDYVYS---------------RVSPVLIISYEMLIRA-----YQTIVDTEFDLLIC 507 (680)
Q Consensus 450 E~~~~~~~~~v~~~--~~~~~~~~~~~~~~---------------~~~~vvI~ty~~l~~~-----~~~l~~~~~~~vIl 507 (680)
.+..+++...+... ++............ ....+++++.+.+... ...+....-.++|+
T Consensus 265 r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIl 344 (733)
T COG1203 265 RAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVIL 344 (733)
T ss_pred HHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhh
Confidence 88888776555444 44443322111100 0011222222222210 01122234568999
Q ss_pred cCcccccCc-ccHHHHH-HHhc--ccceEEEEeCCCCCCCHHHH
Q psy12466 508 DEGHRLKNG-KSKLYEL-MTGL--NIRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 508 DEaH~~kn~-~s~~~~~-l~~l--~~~~rllLTgTP~~n~~~el 547 (680)
||+|.+-.. .....-+ +..+ .....++||||+-.---..|
T Consensus 345 DE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l 388 (733)
T COG1203 345 DEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKL 388 (733)
T ss_pred ccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHH
Confidence 999998665 2222222 2222 36678999999855433333
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=72.97 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=95.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+..-|++.+-..++ |+-.+=|.-+|+|||+.- +-++..+....- +....=-+|||.|+ -|..|--+-+
T Consensus 92 ~teiQ~~~Ip~aL~---------G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW-s~~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 92 MTEIQRDTIPMALQ---------GHDVLGAAKTGSGKTLAFLVPVLEALYRLKW-SPTDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred HHHHHHhhcchhcc---------CcccccccccCCCceeeehHHHHHHHHHcCC-CCCCCceeEEecchHHHHHHHHHHH
Confidence 45567777755432 455566788999999874 334555444321 11111137999997 5556665555
Q ss_pred HHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 452 KKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 452 ~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
.+... ++...++-|..... .........+|+|||...+...++.- .-....++|+|||.++-.-+ ..+...+
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k-~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii 240 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVK-FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAII 240 (758)
T ss_pred HHHhhccccccceeecCchhH-HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHH
Confidence 54321 22333333333222 22233456789999999998877653 33467899999999985432 2223333
Q ss_pred Hhc-ccceEEEEeCCCCCCCHHHHH
Q psy12466 525 TGL-NIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~~n~~~el~ 548 (680)
..| ..+.-++.|||+-. ++.||.
T Consensus 241 ~~lP~~RQTLLFSATqt~-svkdLa 264 (758)
T KOG0343|consen 241 ENLPKKRQTLLFSATQTK-SVKDLA 264 (758)
T ss_pred HhCChhheeeeeecccch-hHHHHH
Confidence 444 33445999999844 345543
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0047 Score=61.32 Aligned_cols=133 Identities=21% Similarity=0.223 Sum_probs=71.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~ 451 (680)
+|-+-|++++..++. .+.+-.+|.-..|+|||.....+...+...+ .++++++|+.-. ..-.+.
T Consensus 1 ~L~~~Q~~a~~~~l~-------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-------~~v~~~apT~~Aa~~L~~~- 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILT-------SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-------KRVIGLAPTNKAAKELREK- 65 (196)
T ss_dssp -S-HHHHHHHHHHHH-------CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---------EEEEESSHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHh-------cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-------CeEEEECCcHHHHHHHHHh-
Confidence 367889999998864 2345678888999999988777776666654 258999998544 332222
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcc-cc
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN-IR 530 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~-~~ 530 (680)
.+ .....++..-....... ...... ....+++|||||..+. .......+..+. ..
T Consensus 66 ---~~-~~a~Ti~~~l~~~~~~~-~~~~~~-----------------~~~~~vliVDEasmv~--~~~~~~ll~~~~~~~ 121 (196)
T PF13604_consen 66 ---TG-IEAQTIHSFLYRIPNGD-DEGRPE-----------------LPKKDVLIVDEASMVD--SRQLARLLRLAKKSG 121 (196)
T ss_dssp ---HT-S-EEEHHHHTTEECCEE-CCSSCC------------------TSTSEEEESSGGG-B--HHHHHHHHHHS-T-T
T ss_pred ---hC-cchhhHHHHHhcCCccc-cccccc-----------------CCcccEEEEecccccC--HHHHHHHHHHHHhcC
Confidence 11 11111110000000000 000000 2346799999999883 334444444443 36
Q ss_pred eEEEEeCCCCCCCH
Q psy12466 531 KRILLSGTPLQNDL 544 (680)
Q Consensus 531 ~rllLTgTP~~n~~ 544 (680)
.++++.|-|.|-.+
T Consensus 122 ~klilvGD~~QL~p 135 (196)
T PF13604_consen 122 AKLILVGDPNQLPP 135 (196)
T ss_dssp -EEEEEE-TTSHHH
T ss_pred CEEEEECCcchhcC
Confidence 79999999987433
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0032 Score=73.45 Aligned_cols=151 Identities=23% Similarity=0.285 Sum_probs=108.6
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|-+-|..++..+...+ ......+|.-.+|.|||-.-+.++.....+|. .+||++|. ++..|-.+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~-----~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-------qvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 197 LALNQEQQAAVEAILSSL-----GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-------QVLVLVPEIALTPQLLAR 264 (730)
T ss_pred cccCHHHHHHHHHHHHhc-----ccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-------EEEEEeccccchHHHHHH
Confidence 357889999999887641 33567899999999999999999999998874 49999997 888999999
Q ss_pred HHHHhCCCCeeEeecCCcchh--hhhh--hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccc--ccCcccHHHHH-
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKA--EDYV--YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHR--LKNGKSKLYEL- 523 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~--~~~~--~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~--~kn~~s~~~~~- 523 (680)
|+..++ .++.++|..-.... ..|. ..+...|||-+-+.+..= -.+..+||+||=|. +|..+...+.+
T Consensus 265 f~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P-----f~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 265 FKARFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP-----FKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred HHHHhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc-----hhhccEEEEeccccccccCCcCCCcCHH
Confidence 998888 56777766544333 3332 346778999998776332 23468999999996 45544433322
Q ss_pred -HH----hcccceEEEEeCCCC
Q psy12466 524 -MT----GLNIRKRILLSGTPL 540 (680)
Q Consensus 524 -l~----~l~~~~rllLTgTP~ 540 (680)
+. .....-.++-||||-
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCC
Confidence 11 123345688899994
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00047 Score=84.70 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=51.4
Q ss_pred CCCeEEEEEC-cccHHHHHHHHHHHhCCCC--e-eEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh-------hhc
Q psy12466 191 YILRVLIVTP-SSLTSNWNDEFKKWLGLTR--M-CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-------IVD 259 (680)
Q Consensus 191 ~~~~~LIV~P-~sl~~nW~~E~~k~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~-------l~~ 259 (680)
..+++|+++| ..|+.||.++|..+..... + .++... ............|+|+||.++.+.... +.-
T Consensus 462 ~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~---~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~ 538 (1123)
T PRK11448 462 RFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIK---GLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPV 538 (1123)
T ss_pred ccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchh---hhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCC
Confidence 3579999999 5578999999999743111 1 112111 111112234578999999988654321 223
Q ss_pred CCCcEEEEcCCCCC
Q psy12466 260 TEFDLLICDEKSLL 273 (680)
Q Consensus 260 ~~~~~vI~DEaH~l 273 (680)
..||+||+|||||-
T Consensus 539 ~~fdlIIiDEaHRs 552 (1123)
T PRK11448 539 DQYDCIIVDEAHRG 552 (1123)
T ss_pred CcccEEEEECCCCC
Confidence 56999999999995
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.002 Score=74.35 Aligned_cols=137 Identities=22% Similarity=0.235 Sum_probs=88.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH--HH--H----HHHH-HHHhCCCCeeEeecC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT--SN--W----NDEF-KKWLGLTRMCPYHVN 466 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll--~q--W----~~E~-~~~~~~~~v~~~~~~ 466 (680)
+..++=+-+|+|+|||.+-+-.+..+-.... ..+++||||+-.+ ++ - .++| +.++...+.-.+...
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG-----~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~ 147 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYG-----LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD 147 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhC-----ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec
Confidence 3445667789999999999988888777654 3569999998444 21 1 2233 333333332222222
Q ss_pred CcchhhhhhhcCCCCEEEEeHHHHHHH---HHh---------------------hhccCceEEEEcCcccccCcccHHHH
Q psy12466 467 QKNKAEDYVYSRVSPVLIISYEMLIRA---YQT---------------------IVDTEFDLLICDEGHRLKNGKSKLYE 522 (680)
Q Consensus 467 ~~~~~~~~~~~~~~~vvI~ty~~l~~~---~~~---------------------l~~~~~~~vIlDEaH~~kn~~s~~~~ 522 (680)
...............|++.+.+.+.+. ... +... --+||+||-|++... .+.+.
T Consensus 148 ~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~-~k~~~ 225 (985)
T COG3587 148 EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD-DKTYG 225 (985)
T ss_pred hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc-hHHHH
Confidence 222223333445567888888887665 211 1111 237999999999765 88999
Q ss_pred HHHhcccceEEEEeCCC
Q psy12466 523 LMTGLNIRKRILLSGTP 539 (680)
Q Consensus 523 ~l~~l~~~~rllLTgTP 539 (680)
++.+++.-..+=.+||-
T Consensus 226 ~i~~l~pl~ilRfgATf 242 (985)
T COG3587 226 AIKQLNPLLILRFGATF 242 (985)
T ss_pred HHHhhCceEEEEecccc
Confidence 99999999888888885
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0045 Score=64.12 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=72.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNW 447 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW 447 (680)
..+++-|..|+-.|. .|-|.-..+|=|||+++...+....-.| +++-||+.+.-+ .+|
T Consensus 76 ~~p~~vQll~~l~L~-----------~G~laEm~TGEGKTli~~l~a~~~AL~G-------~~V~vvT~NdyLA~RD~~~ 137 (266)
T PF07517_consen 76 LRPYDVQLLGALALH-----------KGRLAEMKTGEGKTLIAALPAALNALQG-------KGVHVVTSNDYLAKRDAEE 137 (266)
T ss_dssp ----HHHHHHHHHHH-----------TTSEEEESTTSHHHHHHHHHHHHHHTTS-------S-EEEEESSHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcc-----------cceeEEecCCCCcHHHHHHHHHHHHHhc-------CCcEEEeccHHHhhccHHH
Confidence 345566777775442 4668889999999999865555444444 358888888554 678
Q ss_pred HHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---------hhccCceEEEEcCcccc
Q psy12466 448 NDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---------IVDTEFDLLICDEGHRL 513 (680)
Q Consensus 448 ~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---------l~~~~~~~vIlDEaH~~ 513 (680)
...|-++++-. +...............+ .++|+-+|-..+..++-. .....++++|+||+..+
T Consensus 138 ~~~~y~~LGls-v~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 138 MRPFYEFLGLS-VGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHHHHHTT---EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHHHHHHhhhc-cccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 88888887753 33333322222222222 356888887777654311 12357899999999865
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00073 Score=61.84 Aligned_cols=119 Identities=22% Similarity=0.252 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+.+++.-+.|.|||..+-.++..+........ ...-+.+-||... ...+..++...+...... .
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~------- 69 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------R------- 69 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS------T-------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc------c-------
Confidence 355788899999999999998887764310000 1123456666544 466666666554321111 0
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc--ccceEEEEeCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL--NIRKRILLSGTP 539 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--~~~~rllLTgTP 539 (680)
....+.+....+.+....-.+|||||+|++. .......+..+ .....++++|||
T Consensus 70 --------~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 --------QTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp --------S-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred --------CCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 0111222223344444445799999999984 25555555555 667789999999
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0016 Score=66.74 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=82.1
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
.-..|...+.++.+ ..-.++.-+.|+|||+.+++++......+. ..+++|.=|.--. .|...
T Consensus 60 ~n~~Q~~~l~al~~---------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----~~kIiI~RP~v~~----ge~LG 121 (262)
T PRK10536 60 RNEAQAHYLKAIES---------KQLIFATGEAGCGKTWISAAKAAEALIHKD-----VDRIIVTRPVLQA----DEDLG 121 (262)
T ss_pred CCHHHHHHHHHHhc---------CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----eeEEEEeCCCCCc----hhhhC
Confidence 44577777776643 246788899999999999998885443332 2344544443211 23333
Q ss_pred HhCCCC---eeEe-----ec----CCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHH
Q psy12466 454 WLGLTR---MCPY-----HV----NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLY 521 (680)
Q Consensus 454 ~~~~~~---v~~~-----~~----~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~ 521 (680)
|+|+.. +..| .. .+..............|-|.+...++. ....-++||+||||++.. ....
T Consensus 122 fLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaqn~~~--~~~k 194 (262)
T PRK10536 122 FLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQNVTA--AQMK 194 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcC-----CcccCCEEEEechhcCCH--HHHH
Confidence 333210 0000 00 000000101111234456665544432 123447999999999843 5666
Q ss_pred HHHHhcccceEEEEeCCCCCCCH
Q psy12466 522 ELMTGLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 522 ~~l~~l~~~~rllLTgTP~~n~~ 544 (680)
..+.++....+++++|-|-|.++
T Consensus 195 ~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 195 MFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HHHhhcCCCCEEEEeCChhhccC
Confidence 67788888999999999976543
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0034 Score=68.47 Aligned_cols=136 Identities=20% Similarity=0.199 Sum_probs=78.4
Q ss_pred EcCCCCChHHHHHHHHHHHHhcCCCCCCccce-EEEEecc-chHHHHHHHHHHHhCC--CC-eeEeecCCcchhhhhhhc
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRK-VLIVTPS-SLTSNWNDEFKKWLGL--TR-MCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~~~~~~~~~~-~LIV~P~-sll~qW~~E~~~~~~~--~~-v~~~~~~~~~~~~~~~~~ 477 (680)
-.-+|.|||-.-+-=+.......+.-.|.-+| .||+||+ .+..|-..|.++|... ++ +.+|.|.+...... ...
T Consensus 266 IAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k-~Lk 344 (731)
T KOG0339|consen 266 IAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSK-ELK 344 (731)
T ss_pred eeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHH-hhh
Confidence 34578888864332221111111111222334 4778887 7889999999999632 34 44444444433333 333
Q ss_pred CCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHHHhccc-ceEEEEeCCC
Q psy12466 478 RVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELMTGLNI-RKRILLSGTP 539 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~~l~~-~~rllLTgTP 539 (680)
....+|++|.+.+...... ..-.+..++|+|||.++-.- ..+.......++. +..|+.|+|-
T Consensus 345 ~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf 411 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF 411 (731)
T ss_pred cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc
Confidence 6788999999998765432 22346789999999998442 2222222333333 3348888885
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=77.32 Aligned_cols=170 Identities=18% Similarity=0.133 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCC----CCCccceEEEEec-cchHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPY----GMPVIRKVLIVTP-SSLTSNWNDEF 451 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~----~~~~~~~~LIV~P-~sll~qW~~E~ 451 (680)
.|.+.++....++++.......+.+|+..+|.|||-.|+.-+..-...+.. -+...-++..|+| .+|+..|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 445557777777776666677889999999999999886544333222211 0011235778888 58999999999
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH----HHhhhccCceEEEEcCcccccCcccHH-----HH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA----YQTIVDTEFDLLICDEGHRLKNGKSKL-----YE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~----~~~l~~~~~~~vIlDEaH~~kn~~s~~-----~~ 522 (680)
.++.....+.+..-.+..... .......+|+++|.+...-. .+.-...-+.++|+||.|.+....... .+
T Consensus 385 SkRla~~GI~V~ElTgD~~l~-~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaR 463 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLG-KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVAR 463 (1674)
T ss_pred HhhccccCcEEEEecccccch-hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHH
Confidence 999887777665544433221 12234577999988876211 111111236789999999994332222 22
Q ss_pred HHHhc----ccceEEEEeCCCCCCCHHHHHH
Q psy12466 523 LMTGL----NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 523 ~l~~l----~~~~rllLTgTP~~n~~~el~s 549 (680)
..++. ...+.++||||-- |..|.-+
T Consensus 464 t~r~ses~~e~~RlVGLSATLP--Ny~DV~~ 492 (1674)
T KOG0951|consen 464 TFRRSESTEEGSRLVGLSATLP--NYEDVAS 492 (1674)
T ss_pred HHHHhhhcccCceeeeecccCC--chhhhHH
Confidence 33322 2446699999963 3444444
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0015 Score=66.40 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
-|..|+--++ .++..|--...|+|||.+ +|+++..+.-... ---+||+.|+ -|..|-.+-+...
T Consensus 53 IQqrAi~~Il---------kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-----~tQ~lilsPTRELa~Qi~~vi~al 118 (400)
T KOG0328|consen 53 IQQRAIPQIL---------KGRDVIAQAQSGTGKTATFSISVLQSLDISVR-----ETQALILSPTRELAVQIQKVILAL 118 (400)
T ss_pred HHhhhhhhhh---------cccceEEEecCCCCceEEEEeeeeeecccccc-----eeeEEEecChHHHHHHHHHHHHHh
Confidence 4667765554 357788889999999987 4665554433221 1237999997 5667777777777
Q ss_pred hCCCCeeEeecCCcchh--hhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccC--cccHHHHHHHhcc
Q psy12466 455 LGLTRMCPYHVNQKNKA--EDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKN--GKSKLYELMTGLN 528 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn--~~s~~~~~l~~l~ 528 (680)
...+.+.++...+.+.. .-........++.-|...+.+.+. .|......++|+|||..+-| ...+.+...+.+.
T Consensus 119 g~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp 198 (400)
T KOG0328|consen 119 GDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP 198 (400)
T ss_pred cccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC
Confidence 66677766544432221 111122345677778777765443 35566789999999998754 4677888888885
Q ss_pred -cceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 529 -IRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 529 -~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
....+++|||- +.|+..+.++.++++
T Consensus 199 ~~~Qvv~~SATl----p~eilemt~kfmtdp 225 (400)
T KOG0328|consen 199 PGAQVVLVSATL----PHEILEMTEKFMTDP 225 (400)
T ss_pred CCceEEEEeccC----cHHHHHHHHHhcCCc
Confidence 67789999997 567777777776665
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0027 Score=75.37 Aligned_cols=72 Identities=26% Similarity=0.357 Sum_probs=51.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||.|++....+++.+ ..++.+++-..+|+|||+.+++.+.......+ ...++++.+.+ +-+.|-.+|+
T Consensus 10 ~~y~~Q~~~m~~v~~~l-----~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSL-----DRGDEAILEMPSGTGKTISLLSLILAYQQEKP----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCHHHHHHHHHHHHHh-----ccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----ccccEEEEcccchHHHHHHHHH
Confidence 36899999999888764 34678999999999999988776655443221 12245555555 5668888888
Q ss_pred HH
Q psy12466 452 KK 453 (680)
Q Consensus 452 ~~ 453 (680)
++
T Consensus 81 k~ 82 (705)
T TIGR00604 81 RK 82 (705)
T ss_pred Hh
Confidence 77
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0021 Score=74.95 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=86.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchh--hhhh--hcCCC
Q psy12466 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--EDYV--YSRVS 480 (680)
Q Consensus 406 mGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~--~~~~--~~~~~ 480 (680)
.|.|||-.-+.++......|. .+||++|. ++..|+.+.|+..++...+.++|..-.... ..|. ..+..
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-------~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-------GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-------eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 499999999999998888764 49999997 788999999999998667888887655443 2332 34566
Q ss_pred CEEEEeHHHHHHHHHhhhccCceEEEEcCccc--ccCcccHHHHH--HH----hcccceEEEEeCCCC
Q psy12466 481 PVLIISYEMLIRAYQTIVDTEFDLLICDEGHR--LKNGKSKLYEL--MT----GLNIRKRILLSGTPL 540 (680)
Q Consensus 481 ~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~--~kn~~s~~~~~--l~----~l~~~~rllLTgTP~ 540 (680)
.|+|-|.+.+. ..-.+.++||+||=|. +|...+..+.+ +. ....-..++-|+||-
T Consensus 242 ~IViGtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 242 RVVVGTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred cEEEEcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 79999987652 2223578999999885 45443332211 11 123445577799994
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0026 Score=71.04 Aligned_cols=68 Identities=28% Similarity=0.441 Sum_probs=52.9
Q ss_pred cccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHH
Q psy12466 368 GFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSN 446 (680)
Q Consensus 368 ~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~q 446 (680)
..+...|-+-|++|+.+.... ..-.++--.+|+|||.+...++..+..++. ++||.+|+.+ +.|
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~--------k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k-------~VLVcaPSn~AVdN 244 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINN--------KDLLIIHGPPGTGKTRTLVEIISQLVKQKK-------RVLVCAPSNVAVDN 244 (649)
T ss_pred ccCCccccHHHHHHHHHHhcc--------CCceEeeCCCCCCceeeHHHHHHHHHHcCC-------eEEEEcCchHHHHH
Confidence 346677889999999998652 134566779999999999999998888763 6999999854 466
Q ss_pred HHHH
Q psy12466 447 WNDE 450 (680)
Q Consensus 447 W~~E 450 (680)
-.+.
T Consensus 245 iver 248 (649)
T KOG1803|consen 245 IVER 248 (649)
T ss_pred HHHH
Confidence 6663
|
|
| >PF10382 DUF2439: Protein of unknown function (DUF2439); InterPro: IPR018838 This domain is found at the N-terminal of proteins implicated in telomere maintenance in Saccharomyces cerevisiae (Baker's yeast) [] and in meiotic chromosome segregation in Schizosaccharomyces pombe (Fission yeast) [] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00092 Score=56.60 Aligned_cols=44 Identities=30% Similarity=0.544 Sum_probs=38.7
Q ss_pred EEEEEeeCCCCCCCCCcccceEEEEe--CceeEEecccccccccccc
Q psy12466 60 IFNVVYGKPSAKKHKSWEQDGVLEIS--GTMAILKDTLGKVIDSKVK 104 (680)
Q Consensus 60 ~~~~~w~k~~~~k~k~w~~~~~~~~~--~~~~~l~~~~gk~~~~~~~ 104 (680)
.|.|||-+..+||+|+|. ||+|.+. +..+.|.|+.|..+++...
T Consensus 3 ey~~lYT~q~~kK~K~W~-DG~l~~~~~~~kv~Lyde~~~~i~~~~~ 48 (83)
T PF10382_consen 3 EYECLYTHQKTKKRKKWH-DGFLKYHSFNKKVMLYDEDGNLIGSDFL 48 (83)
T ss_pred EEEEEEEccccccceeeE-CCEEEEEeCCCEEEEEcCCCCEEeEEEE
Confidence 499999999999999996 9999997 8889999998888776443
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.003 Score=68.60 Aligned_cols=88 Identities=23% Similarity=0.341 Sum_probs=53.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHH--HhcCCCCCCccceEEEEeccchHHHH-HHHHHHHh-CCCCeeEeecCCcchhhhhh
Q psy12466 400 AILADEMGLGKTLQCIALIWTL--LRQGPYGMPVIRKVLIVTPSSLTSNW-NDEFKKWL-GLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~--~~~~~~~~~~~~~~LIV~P~sll~qW-~~E~~~~~-~~~~v~~~~~~~~~~~~~~~ 475 (680)
.++--.+|+|||+.++.++..+ ...+ ...+++|++..+.+. .+.+.+-. +.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~-------~~~~~l~~n~~l~~~l~~~l~~~~~~~------------------ 58 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEG-------KKVLYLCGNHPLRNKLREQLAKKYNPK------------------ 58 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccC-------CceEEEEecchHHHHHHHHHhhhcccc------------------
Confidence 4566789999999999999988 3322 247889998666554 44454422 00
Q ss_pred hcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn 515 (680)
.....+.....+..... ......+|+|||||||++..
T Consensus 59 ---~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 ---LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 11122222333322222 22345799999999999976
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.011 Score=73.20 Aligned_cols=76 Identities=8% Similarity=0.080 Sum_probs=51.9
Q ss_pred eEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEc
Q psy12466 434 KVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICD 508 (680)
Q Consensus 434 ~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlD 508 (680)
.++|+|+. .-+....+.+.+.+|..++.++||.-..... .....+..+|+|+| +.+.+-+ .-.+.++||++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-dIierGI---DIP~v~~VIi~ 886 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-TIIETGI---DIPTANTIIIE 886 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-chhhccc---ccccCCEEEEe
Confidence 48999986 4456677778888888899999987544322 22345678999998 3333322 22357789999
Q ss_pred Ccccc
Q psy12466 509 EGHRL 513 (680)
Q Consensus 509 EaH~~ 513 (680)
.|+++
T Consensus 887 ~ad~f 891 (1147)
T PRK10689 887 RADHF 891 (1147)
T ss_pred cCCCC
Confidence 88765
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0024 Score=72.51 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=93.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
-+|-|||..++.-+ .++...++..-+-.|||+.| .|++..++... |++.--|- +|-.|=.+
T Consensus 128 F~LDpFQ~~aI~Ci---------dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ--------RVIYTSPIKALSNQKYR 190 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI---------DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ--------RVIYTSPIKALSNQKYR 190 (1041)
T ss_pred cccCchHhhhhhhh---------cCCceEEEEeecCCCcchHHHHHHHHHHHhcC--------eEEeeChhhhhcchhHH
Confidence 45888999999554 34577889899999999998 55555666554 58888884 66678888
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcccH-HH-HHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGKSK-LY-ELMT 525 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~s~-~~-~~l~ 525 (680)
|+..=+++ |.+..|+..- ......+|+|-+.++...-.-. -.....||+||.|+++..... .+ ..+.
T Consensus 191 El~~EF~D--VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETII 261 (1041)
T KOG0948|consen 191 ELLEEFKD--VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETII 261 (1041)
T ss_pred HHHHHhcc--cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEE
Confidence 88776655 3444443322 1346688999999876432211 124677999999999874322 11 1222
Q ss_pred hc-ccceEEEEeCCC
Q psy12466 526 GL-NIRKRILLSGTP 539 (680)
Q Consensus 526 ~l-~~~~rllLTgTP 539 (680)
-+ ..-+-++||||-
T Consensus 262 llP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 262 LLPDNVRFVFLSATI 276 (1041)
T ss_pred eccccceEEEEeccC
Confidence 33 333558899994
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0025 Score=70.18 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=85.5
Q ss_pred eEEEcCCCCChHHH-HHHHHHHHHhcCCC---------CCCccceEEEEecc-chHHHHHHHHHHHhCC--CCeeEeecC
Q psy12466 400 AILADEMGLGKTLQ-CIALIWTLLRQGPY---------GMPVIRKVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVN 466 (680)
Q Consensus 400 ~iLaDemGlGKT~~-aiali~~~~~~~~~---------~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~--~~v~~~~~~ 466 (680)
.+=|.|+|.|||+. +|-++..+...+.. ..+ -.-.|||+|+ -|..|-.+.|...++. .++..+.|.
T Consensus 222 IlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~-k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GG 300 (731)
T KOG0347|consen 222 ILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYV-KPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGG 300 (731)
T ss_pred cccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccC-cceeEEecChHHHHHHHHHHHHHhccccCeEEEEeech
Confidence 44468999999986 45555533322211 000 0126999997 6778888888877654 444444444
Q ss_pred CcchhhhhhhcCCCCEEEEeHHHHHHHHHh----hhc-cCceEEEEcCcccc--cCcccHHHHHHHhcc------cceEE
Q psy12466 467 QKNKAEDYVYSRVSPVLIISYEMLIRAYQT----IVD-TEFDLLICDEGHRL--KNGKSKLYELMTGLN------IRKRI 533 (680)
Q Consensus 467 ~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~----l~~-~~~~~vIlDEaH~~--kn~~s~~~~~l~~l~------~~~rl 533 (680)
-.............+|||+|...|...+.. +.+ ....++|+|||.++ ++.-..+.+.+..|. .+--+
T Consensus 301 LavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTl 380 (731)
T KOG0347|consen 301 LAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTL 380 (731)
T ss_pred hHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceE
Confidence 333333333334789999999988665432 222 24679999999998 444445555555553 22348
Q ss_pred EEeCCC
Q psy12466 534 LLSGTP 539 (680)
Q Consensus 534 lLTgTP 539 (680)
+.|||-
T Consensus 381 VFSATl 386 (731)
T KOG0347|consen 381 VFSATL 386 (731)
T ss_pred EEEEEe
Confidence 999996
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0061 Score=75.12 Aligned_cols=130 Identities=26% Similarity=0.243 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-----chHHHHHHHHHHHhCCCCeeEeecCCcchh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-----SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA 471 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-----sll~qW~~E~~~~~~~~~v~~~~~~~~~~~ 471 (680)
+.-.|++-++|+|||.|.=.++.... .+. .+.+.+.-|. ++..+-.+|+..-.+.. + -|.. +.
T Consensus 89 ~~VviI~GeTGSGKTTqlPq~lle~g-~g~-----~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~-V-GY~v----rf 156 (1294)
T PRK11131 89 HQVVIVAGETGSGKTTQLPKICLELG-RGV-----KGLIGHTQPRRLAARTVANRIAEELETELGGC-V-GYKV----RF 156 (1294)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC-CCC-----CCceeeCCCcHHHHHHHHHHHHHHHhhhhcce-e-ceee----cC
Confidence 45688999999999997544443321 111 1122223353 44466666666433321 1 1111 11
Q ss_pred hhhhhcCCCCEEEEeHHHHHHHHHhh-hccCceEEEEcCcc-cccCcccHHHHHHHhc----ccceEEEEeCCCC
Q psy12466 472 EDYVYSRVSPVLIISYEMLIRAYQTI-VDTEFDLLICDEGH-RLKNGKSKLYELMTGL----NIRKRILLSGTPL 540 (680)
Q Consensus 472 ~~~~~~~~~~vvI~ty~~l~~~~~~l-~~~~~~~vIlDEaH-~~kn~~s~~~~~l~~l----~~~~rllLTgTP~ 540 (680)
.+. ......|+++|...+.+.+..- .-..+++||||||| +.-|.+-... .++.+ .....+++|||.-
T Consensus 157 ~~~-~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpdlKvILmSATid 229 (1294)
T PRK11131 157 NDQ-VSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPDLKVIITSATID 229 (1294)
T ss_pred ccc-cCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHH-HHHHhhhcCCCceEEEeeCCCC
Confidence 111 1235689999999998765421 12468999999999 4555443322 23333 2346799999984
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0016 Score=76.58 Aligned_cols=106 Identities=11% Similarity=0.084 Sum_probs=65.8
Q ss_pred CCCeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH-hhhcC---CCc-E
Q psy12466 191 YILRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-TIVDT---EFD-L 264 (680)
Q Consensus 191 ~~~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-~l~~~---~~~-~ 264 (680)
...++|||||. .|..||.++|.++.+. .+....+.............+|+|+++.++..... .+... ..+ +
T Consensus 292 ~~~~vl~lvdR~~L~~Q~~~~f~~~~~~---~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 292 KNPKVFFVVDRRELDYQLMKEFQSLQKD---CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhhCCC---CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 35689999995 5788999999998752 11111111222222333457899999999976322 22222 223 8
Q ss_pred EEEcCCCCCCCCCCCCCccc-cCCCCCCceeccCCCCC
Q psy12466 265 LICDEKSLLKPPSGNSPGND-SGIPSLPRKSDSGIGSL 301 (680)
Q Consensus 265 vI~DEaH~lKN~~s~~~~a~-~~l~~~~r~~LTG~~~~ 301 (680)
||+|||||.--. ...+.+ ..++...++.|||+...
T Consensus 369 vIvDEaHrs~~~--~~~~~l~~~~p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 369 VIFDEAHRSQYG--ELAKNLKKALKNASFFGFTGTPIF 404 (667)
T ss_pred EEEEcCccccch--HHHHHHHhhCCCCcEEEEeCCCcc
Confidence 999999986422 223334 34666789999987643
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0045 Score=73.27 Aligned_cols=106 Identities=25% Similarity=0.290 Sum_probs=65.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.|-|--..+|.|||+++..-+......+ +.++||+|+ .|. .+|...+.++++ +++.++.+........
T Consensus 96 ~G~Iaem~TGeGKTL~a~Lpa~~~al~G-------~~V~VvTpn~yLA~qd~e~m~~l~~~lG-Ltv~~i~gg~~~~~r~ 167 (896)
T PRK13104 96 EGNIAEMRTGEGKTLVATLPAYLNAISG-------RGVHIVTVNDYLAKRDSQWMKPIYEFLG-LTVGVIYPDMSHKEKQ 167 (896)
T ss_pred cCccccccCCCCchHHHHHHHHHHHhcC-------CCEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCHHHHH
Confidence 4667778999999998654443323233 238999998 444 446666666655 4555554443322222
Q ss_pred hhhcCCCCEEEEeHHHHH-HHHHh--------hhccCceEEEEcCcccc
Q psy12466 474 YVYSRVSPVLIISYEMLI-RAYQT--------IVDTEFDLLICDEGHRL 513 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~-~~~~~--------l~~~~~~~vIlDEaH~~ 513 (680)
..+ ..+|++.|...+. ..+.. .....+.++|+|||+.+
T Consensus 168 ~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 168 EAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred HHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 222 5789999998872 22111 11247899999999986
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0037 Score=61.91 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=55.8
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
-.++|||||.. ++.++.++++++.... ++..++++..............+|+|+|.+.+...... +.-..++++|
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lI 148 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLV 148 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEE
Confidence 35799999965 6788999999997533 33444444332222222224678999998887664432 1113578999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||+|.+-+.
T Consensus 149 vDE~h~~~~~ 158 (203)
T cd00268 149 LDEADRMLDM 158 (203)
T ss_pred EeChHHhhcc
Confidence 9999998754
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=65.17 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL 455 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~ 455 (680)
-|-+|+.-|.+.+ ..+.+.-.|--.+|+|||+++.-++.... +|+||++|+ .|..|-..||+.|+
T Consensus 16 DQP~AI~~Lv~gi----~~g~~~QtLLGvTGSGKTfT~AnVI~~~~----------rPtLV~AhNKTLAaQLy~Efk~fF 81 (663)
T COG0556 16 DQPEAIAELVEGI----ENGLKHQTLLGVTGSGKTFTMANVIAKVQ----------RPTLVLAHNKTLAAQLYSEFKEFF 81 (663)
T ss_pred CcHHHHHHHHHHH----hcCceeeEEeeeccCCchhHHHHHHHHhC----------CCeEEEecchhHHHHHHHHHHHhC
Confidence 5889999888753 33445566777899999999988886542 369999997 66799999999999
Q ss_pred CCCCeeE
Q psy12466 456 GLTRMCP 462 (680)
Q Consensus 456 ~~~~v~~ 462 (680)
|...|-.
T Consensus 82 P~NaVEY 88 (663)
T COG0556 82 PENAVEY 88 (663)
T ss_pred cCcceEE
Confidence 9876544
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=72.61 Aligned_cols=136 Identities=23% Similarity=0.146 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
+.-.||+-++|.|||.|.=.++.... .+. .+.+++.-|.-+. ......+.+-.+. .+...-|.. .+....
T Consensus 82 ~~vvii~g~TGSGKTTqlPq~lle~~-~~~-----~~~I~~tQPRRlAA~svA~RvA~elg~-~lG~~VGY~-vR~~~~- 152 (1283)
T TIGR01967 82 NQVVIIAGETGSGKTTQLPKICLELG-RGS-----HGLIGHTQPRRLAARTVAQRIAEELGT-PLGEKVGYK-VRFHDQ- 152 (1283)
T ss_pred CceEEEeCCCCCCcHHHHHHHHHHcC-CCC-----CceEecCCccHHHHHHHHHHHHHHhCC-CcceEEeeE-EcCCcc-
Confidence 46789999999999998755543321 111 1234444454332 3333334333322 111111110 011111
Q ss_pred hcCCCCEEEEeHHHHHHHHHhh-hccCceEEEEcCcc-cccCcccHHH--HHHH-hcccceEEEEeCCCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTI-VDTEFDLLICDEGH-RLKNGKSKLY--ELMT-GLNIRKRILLSGTPLQ 541 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l-~~~~~~~vIlDEaH-~~kn~~s~~~--~~l~-~l~~~~rllLTgTP~~ 541 (680)
......|.++|...+.+.+..- .-..+++||+|||| +.-+.+-... +.+. ....-..++||||.-.
T Consensus 153 ~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~ 223 (1283)
T TIGR01967 153 VSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDP 223 (1283)
T ss_pred cCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCH
Confidence 1234679999999987654321 12368999999999 4555443322 2221 1133457999999843
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0044 Score=59.13 Aligned_cols=83 Identities=24% Similarity=0.362 Sum_probs=58.2
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhc-ccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYV-YSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
++||+||. +++.+=.+++.+++... ++..++++......... .....+|+|+|++.+...... +.-...++||+
T Consensus 46 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 46 RVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred eEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhccccccccccccceeecc
Confidence 89999994 57888999999998653 44444444332212211 235689999999999877664 11234899999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||+|.+-..
T Consensus 126 DE~h~l~~~ 134 (169)
T PF00270_consen 126 DEAHHLSDE 134 (169)
T ss_dssp ETHHHHHHT
T ss_pred Ccccccccc
Confidence 999998774
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0051 Score=68.75 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=55.3
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~ 267 (680)
.++||++|+. |..++.+.+..|.... ++..++|+..............+|+|+|.+.+..... .+.-..+++||+
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 4799999976 5678888888887433 4444444433222222233456899999998866543 223345788999
Q ss_pred cCCCCCCC
Q psy12466 268 DEKSLLKP 275 (680)
Q Consensus 268 DEaH~lKN 275 (680)
||||++-.
T Consensus 154 DEah~~l~ 161 (434)
T PRK11192 154 DEADRMLD 161 (434)
T ss_pred ECHHHHhC
Confidence 99999864
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.009 Score=70.70 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=66.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.|.|--..+|-|||++|...+......|. .+-||+|+..+ .+|...+-+|++ +++.++.+........
T Consensus 96 ~G~iaEM~TGEGKTLvA~l~a~l~al~G~-------~VhvvT~ndyLA~RD~e~m~~l~~~lG-l~v~~i~~~~~~~err 167 (913)
T PRK13103 96 EGKIAEMRTGEGKTLVGTLAVYLNALSGK-------GVHVVTVNDYLARRDANWMRPLYEFLG-LSVGIVTPFQPPEEKR 167 (913)
T ss_pred cCccccccCCCCChHHHHHHHHHHHHcCC-------CEEEEeCCHHHHHHHHHHHHHHhcccC-CEEEEECCCCCHHHHH
Confidence 56677789999999976544433333332 38999998555 445555555554 4555554443333322
Q ss_pred hhhcCCCCEEEEeHHHH-----HHHHH----hhhccCceEEEEcCcccc
Q psy12466 474 YVYSRVSPVLIISYEML-----IRAYQ----TIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l-----~~~~~----~l~~~~~~~vIlDEaH~~ 513 (680)
..+ .++|++.|...| +..+. ......+.++|+||+|.+
T Consensus 168 ~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 168 AAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred HHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 222 388999998886 32221 223467899999999987
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.023 Score=56.06 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=26.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
.++.-+||.|||..++.++..+...+. +++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~-------~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGM-------KVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCC-------eEEEEec
Confidence 466779999999999999988876653 5777755
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.019 Score=61.99 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=87.0
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCC-CCCccceEEEEecc-chHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPY-GMPVIRKVLIVTPS-SLTSNWNDEFKK 453 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~-~~~~~~~~LIV~P~-sll~qW~~E~~~ 453 (680)
-|..++-.+++ +...+--.-+|.|||..- |-++..+...... .....-..+|++|+ -|..|-+..+.+
T Consensus 45 IQs~aIplaLE---------gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viek 115 (569)
T KOG0346|consen 45 IQSSAIPLALE---------GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEK 115 (569)
T ss_pred hhhcccchhhc---------CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHH
Confidence 35566655544 234444478999999873 4456555543322 11222347999997 677777777655
Q ss_pred H---hC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCccc--HHHHHH
Q psy12466 454 W---LG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNGKS--KLYELM 524 (680)
Q Consensus 454 ~---~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~~s--~~~~~l 524 (680)
. |+ +.++.-+..+..............+|+++|...+.+.... .......++|+|||.-+-..+. ...+..
T Consensus 116 L~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~ 195 (569)
T KOG0346|consen 116 LVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLR 195 (569)
T ss_pred HHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHH
Confidence 4 44 3333333322222233344456789999999988765432 1123467999999998754322 122222
Q ss_pred Hhccc-ceEEEEeCCC
Q psy12466 525 TGLNI-RKRILLSGTP 539 (680)
Q Consensus 525 ~~l~~-~~rllLTgTP 539 (680)
..|.. ---++||||-
T Consensus 196 ~~LPr~~Q~~LmSATl 211 (569)
T KOG0346|consen 196 SHLPRIYQCFLMSATL 211 (569)
T ss_pred HhCCchhhheeehhhh
Confidence 22321 1237777775
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.014 Score=69.00 Aligned_cols=119 Identities=20% Similarity=0.192 Sum_probs=70.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHH---HHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSN---WND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~q---W~~ 449 (680)
.++-|.-|.--| ..|.|.-..+|.|||+++...+......+. .+-||+|+. |..+ |..
T Consensus 82 ~~dvQlig~l~L-----------~~G~Iaem~TGeGKTLva~lpa~l~aL~G~-------~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 82 HFDVQLIGGMVL-----------HEGKIAEMKTGEGKTLVATLPAYLNALTGK-------GVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred CCccHHHhhHHh-----------cCCchhhhhcCCCcHHHHHHHHHHHHHcCC-------CEEEEecCHHHHHHHHHHHH
Confidence 445577666443 146677899999999986544432222332 277999985 4444 555
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH-HH--------hhhccCceEEEEcCcccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA-YQ--------TIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~-~~--------~l~~~~~~~vIlDEaH~~ 513 (680)
.+-++++ +++.+..+..........+ ..+|++.|...+.-+ .. .+....+.++|+|||..+
T Consensus 144 ~l~~~LG-lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 144 PLYEFLG-LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred HHHhhcC-CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 5555544 3444444433333222222 378999998888322 11 122456889999999876
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0058 Score=68.79 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=55.8
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCCee--EEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTRMC--PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~ 267 (680)
.++|||||+. |..+|.+++.++.....+. .+.++..............+|+|+|.+.+..... .+.-...++||+
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lVi 155 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVL 155 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEe
Confidence 3789999965 5679999999997544443 3333332222222233567899999998865443 122245889999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-..
T Consensus 156 DEah~ll~~ 164 (456)
T PRK10590 156 DEADRMLDM 164 (456)
T ss_pred ecHHHHhcc
Confidence 999998653
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=68.01 Aligned_cols=67 Identities=27% Similarity=0.403 Sum_probs=52.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~E 450 (680)
..|-+.|+.+|.+.+. .....++--.+|+|||.++++++..+...+. ++||++|+. .+.+-.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~--------~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-------~VLv~a~sn~Avd~l~e~ 220 (637)
T TIGR00376 156 PNLNESQKEAVSFALS--------SKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-------RVLVTAPSNIAVDNLLER 220 (637)
T ss_pred CCCCHHHHHHHHHHhc--------CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-------CEEEEcCcHHHHHHHHHH
Confidence 4688999999988753 2245778889999999999999888776653 599999974 55777777
Q ss_pred HHH
Q psy12466 451 FKK 453 (680)
Q Consensus 451 ~~~ 453 (680)
+..
T Consensus 221 l~~ 223 (637)
T TIGR00376 221 LAL 223 (637)
T ss_pred HHh
Confidence 765
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0056 Score=68.98 Aligned_cols=83 Identities=8% Similarity=0.105 Sum_probs=56.5
Q ss_pred eEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 194 RVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 194 ~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
++||+||+- |..||.++++++.. ..++..++|+..............+|+|+|.+.+...... +.-..+++||+
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVL 153 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEE
Confidence 689999965 56799999998862 3455556555433222222235678999999998765542 22235789999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 154 DEad~~l~~ 162 (460)
T PRK11776 154 DEADRMLDM 162 (460)
T ss_pred ECHHHHhCc
Confidence 999988653
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0099 Score=66.91 Aligned_cols=68 Identities=24% Similarity=0.383 Sum_probs=55.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~E 450 (680)
.+|..-|..||...+++ .=.||--.+|+|||+++.+++..+...+ .+|+||++|+. .+.|-.+.
T Consensus 409 pkLN~SQ~~AV~~VL~r---------plsLIQGPPGTGKTvtsa~IVyhl~~~~------~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQR---------PLSLIQGPPGTGKTVTSATIVYHLARQH------AGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhhchHHHHHHHHHHcC---------CceeeecCCCCCceehhHHHHHHHHHhc------CCceEEEcccchhHHHHHHH
Confidence 46888999999998765 4468889999999999999988887774 35799999975 55888887
Q ss_pred HHHH
Q psy12466 451 FKKW 454 (680)
Q Consensus 451 ~~~~ 454 (680)
|.+-
T Consensus 474 Ih~t 477 (935)
T KOG1802|consen 474 IHKT 477 (935)
T ss_pred HHhc
Confidence 7763
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0079 Score=67.01 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=56.2
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~ 267 (680)
.++||+||+. |..+|.+++.++... .++..++++..............+|+|+|.+.+..... .+.-..+.++|+
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 4789999965 467899998888743 44555555443222222223456899999998866543 223345889999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 164 DEad~l~~~ 172 (423)
T PRK04837 164 DEADRMFDL 172 (423)
T ss_pred ecHHHHhhc
Confidence 999998653
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=68.10 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=78.2
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.|-|.-..+|-|||+++...+......+. .+.||+|+. |. ..|...+.+|++. ++.+..+........
T Consensus 96 ~G~IaEm~TGEGKTL~a~lp~~l~al~g~-------~VhIvT~ndyLA~RD~e~m~~l~~~lGl-sv~~i~~~~~~~~r~ 167 (908)
T PRK13107 96 SNRIAEMRTGEGKTLTATLPAYLNALTGK-------GVHVITVNDYLARRDAENNRPLFEFLGL-TVGINVAGLGQQEKK 167 (908)
T ss_pred CCccccccCCCCchHHHHHHHHHHHhcCC-------CEEEEeCCHHHHHHHHHHHHHHHHhcCC-eEEEecCCCCHHHHH
Confidence 46677789999999986544433333332 389999984 43 6788888888764 444333322221111
Q ss_pred hhhcCCCCEEEEeHHHHHHHH---------HhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAY---------QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~---------~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~ 544 (680)
..-.++|+..|-..+.-++ +......+.++|+||+..+--. .++.-+++||.+ ...
T Consensus 168 --~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD-----------EArtPLIISg~~-~~~- 232 (908)
T PRK13107 168 --AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID-----------EARTPLIISGAA-EDS- 232 (908)
T ss_pred --hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc-----------cCCCceeecCCC-ccc-
Confidence 1124688888876662211 1223367889999999876332 233457888854 333
Q ss_pred HHHHHHHh
Q psy12466 545 QEFFYLND 552 (680)
Q Consensus 545 ~el~sll~ 552 (680)
.++|..+.
T Consensus 233 ~~~y~~~~ 240 (908)
T PRK13107 233 SELYIKIN 240 (908)
T ss_pred hHHHHHHH
Confidence 45555443
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.042 Score=66.16 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=43.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHH-HHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNW-NDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW-~~E 450 (680)
+.|+-|.+-...+.+.+ ..+...++-..+|+|||+.-+.-+.... . ..+++|.||+..+ .|- .++
T Consensus 245 e~R~~Q~~ma~~V~~~l-----~~~~~~~~eA~tGtGKT~ayllp~l~~~-~-------~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 245 EERPKQESFAKLVGEDF-----HDGPASFIEAQTGIGKTYGYLLPLLAQS-D-------QRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred ccCHHHHHHHHHHHHHH-----hCCCcEEEECCCCCcHHHHHHHHHHHhc-C-------CCcEEEEeCcHHHHHHHHHHH
Confidence 57888988777776653 2335566778999999987554322211 1 1369999998544 554 344
Q ss_pred HHH
Q psy12466 451 FKK 453 (680)
Q Consensus 451 ~~~ 453 (680)
+..
T Consensus 312 i~~ 314 (820)
T PRK07246 312 VKA 314 (820)
T ss_pred HHH
Confidence 443
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.027 Score=65.25 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=80.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~~ 449 (680)
.++-|.-|...|+ .|.|.-..+|-|||++|...+......|. .+.||+|+..+ .+|..
T Consensus 79 ~ydvQlig~l~Ll-----------~G~VaEM~TGEGKTLvA~l~a~l~AL~G~-------~VhvvT~NdyLA~RDae~m~ 140 (764)
T PRK12326 79 PFDVQLLGALRLL-----------AGDVIEMATGEGKTLAGAIAAAGYALQGR-------RVHVITVNDYLARRDAEWMG 140 (764)
T ss_pred cchHHHHHHHHHh-----------CCCcccccCCCCHHHHHHHHHHHHHHcCC-------CeEEEcCCHHHHHHHHHHHH
Confidence 4456877776653 35677788899999998766655555443 48999998655 55666
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHH-----HHHH----HhhhccCceEEEEcCcccccCcccHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRAY----QTIVDTEFDLLICDEGHRLKNGKSKL 520 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l-----~~~~----~~l~~~~~~~vIlDEaH~~kn~~s~~ 520 (680)
.+-+|++ +++.+..+..........+ .++|+-+|-..+ +..+ +......++++|+||+..+--.
T Consensus 141 ~ly~~LG-Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID---- 213 (764)
T PRK12326 141 PLYEALG-LTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD---- 213 (764)
T ss_pred HHHHhcC-CEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec----
Confidence 6666655 3455444433333222222 356665554433 2221 2233457899999999865211
Q ss_pred HHHHHhcccceEEEEeCCC
Q psy12466 521 YELMTGLNIRKRILLSGTP 539 (680)
Q Consensus 521 ~~~l~~l~~~~rllLTgTP 539 (680)
.++.-+.+||.+
T Consensus 214 -------eArtPLiISg~~ 225 (764)
T PRK12326 214 -------EALVPLVLAGST 225 (764)
T ss_pred -------cccCceeeeCCC
Confidence 234457777755
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.013 Score=70.58 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=61.9
Q ss_pred CeEEEEECcccHHH-HHHHHHHHh---C-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH-------HhhhcC
Q psy12466 193 LRVLIVTPSSLTSN-WNDEFKKWL---G-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY-------QTIVDT 260 (680)
Q Consensus 193 ~~~LIV~P~sl~~n-W~~E~~k~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~-------~~l~~~ 260 (680)
.++|+|=|+..+.| =.++|++|. | ...+..|.|+..............+|++|||+|+-... ..+. .
T Consensus 116 a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~-~ 194 (851)
T COG1205 116 ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLL-R 194 (851)
T ss_pred ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHH-h
Confidence 48899999877655 556788886 3 23455666655444443344567889999999995521 1222 2
Q ss_pred CCcEEEEcCCCCCCCCC-CCCCccccCCCCC
Q psy12466 261 EFDLLICDEKSLLKPPS-GNSPGNDSGIPSL 290 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN~~-s~~~~a~~~l~~~ 290 (680)
.+.+||+||+|.-+-.- |..+-.+++|.-.
T Consensus 195 ~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~ 225 (851)
T COG1205 195 NLKYLVVDELHTYRGVQGSEVALLLRRLLRR 225 (851)
T ss_pred cCcEEEEecceeccccchhHHHHHHHHHHHH
Confidence 38899999999877543 2334444444433
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.043 Score=55.28 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=75.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
-.+||-|.+-+..|.+ ...+.+.++-.-||-|||...+=+++.....+. +=+-+|||++++.|-.+-+
T Consensus 22 iliR~~Q~~ia~~mi~------~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~------~LvrviVpk~Ll~q~~~~L 89 (229)
T PF12340_consen 22 ILIRPVQVEIAREMIS------PPSGKNSVMQLNMGEGKTSVIVPMLALALADGS------RLVRVIVPKALLEQMRQML 89 (229)
T ss_pred ceeeHHHHHHHHHHhC------CCCCCCeEeeecccCCccchHHHHHHHHHcCCC------cEEEEEcCHHHHHHHHHHH
Confidence 3589999999988864 245678899999999999988888887777664 2378999999999998888
Q ss_pred HHHhCCC---CeeEeecCCcchhh-----hh-----hhcCCCCEEEEeHHHHHH
Q psy12466 452 KKWLGLT---RMCPYHVNQKNKAE-----DY-----VYSRVSPVLIISYEMLIR 492 (680)
Q Consensus 452 ~~~~~~~---~v~~~~~~~~~~~~-----~~-----~~~~~~~vvI~ty~~l~~ 492 (680)
..-++.. ++..+..+...... .+ .-.....|++++.+.+..
T Consensus 90 ~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 90 RSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred HHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 7766431 23333332222111 11 112356799999887643
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.023 Score=59.76 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=92.4
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
-|-|...+-.+++ |+.||=+.-+|.|||.. ++-.+..+ ...|++. =.||+.|+ -+..|-.+.|.
T Consensus 31 TpiQ~~cIpkILe---------Grdcig~AkTGsGKT~AFaLPil~rL-sedP~gi----FalvlTPTrELA~QiaEQF~ 96 (442)
T KOG0340|consen 31 TPIQQACIPKILE---------GRDCIGCAKTGSGKTAAFALPILNRL-SEDPYGI----FALVLTPTRELALQIAEQFI 96 (442)
T ss_pred CchHhhhhHHHhc---------ccccccccccCCCcchhhhHHHHHhh-ccCCCcc----eEEEecchHHHHHHHHHHHH
Confidence 3567777766653 57788899999999975 33333333 3334443 26999998 45566666655
Q ss_pred HHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh------hhccCceEEEEcCcccccCcccH-HHH-
Q psy12466 453 KWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT------IVDTEFDLLICDEGHRLKNGKSK-LYE- 522 (680)
Q Consensus 453 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~------l~~~~~~~vIlDEaH~~kn~~s~-~~~- 522 (680)
-.-. ..++.++.|....-..........++++++.+.+...... ..-.+..++|+|||.++-+..-. ...
T Consensus 97 alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~ 176 (442)
T KOG0340|consen 97 ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEG 176 (442)
T ss_pred HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhh
Confidence 4322 2455556555444444455556778999999888654322 12235678999999998664321 112
Q ss_pred HHHhcccc-eEEEEeCCC
Q psy12466 523 LMTGLNIR-KRILLSGTP 539 (680)
Q Consensus 523 ~l~~l~~~-~rllLTgTP 539 (680)
....+..+ --+++|||-
T Consensus 177 i~e~lP~~RQtLlfSATi 194 (442)
T KOG0340|consen 177 IEECLPKPRQTLLFSATI 194 (442)
T ss_pred hhccCCCccceEEEEeeh
Confidence 22233333 459999984
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.01 Score=69.35 Aligned_cols=84 Identities=10% Similarity=0.124 Sum_probs=55.7
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
.++||+||+. |..||.+++.+|.. ..++..++++..............+|+|+|-+.+..+... +.-....+||
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 4789999965 56899999998863 3455555555432222222234578999999988665432 2223577899
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||.+-+.
T Consensus 155 lDEAd~ml~~ 164 (629)
T PRK11634 155 LDEADEMLRM 164 (629)
T ss_pred eccHHHHhhc
Confidence 9999987544
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.063 Score=65.70 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=40.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SN 446 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~q 446 (680)
..||-|.+-.+.+.+.+. .+..+++-..+|+|||+.-+.-+....... .++++|-+++..+ .|
T Consensus 257 e~R~~Q~~m~~~v~~~l~-----~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~------~~~vvIsT~T~~LQ~Q 320 (928)
T PRK08074 257 EKREGQQEMMKEVYTALR-----DSEHALIEAGTGTGKSLAYLLPAAYFAKKK------EEPVVISTYTIQLQQQ 320 (928)
T ss_pred cCCHHHHHHHHHHHHHHh-----cCCCEEEECCCCCchhHHHHHHHHHHhhcc------CCeEEEEcCCHHHHHH
Confidence 678889887777766532 335566778999999997654443333221 1357777776443 45
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.034 Score=64.29 Aligned_cols=145 Identities=16% Similarity=0.220 Sum_probs=84.1
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~ 454 (680)
+.|+.++...+. ..-.+|.-.+|+|||.++..++..+....+... ..++++++|+.-. ....+-+...
T Consensus 148 ~~Qk~A~~~al~---------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~--~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALK---------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQG--KLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhh---------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccC--CCcEEEECCcHHHHHHHHHHHHhh
Confidence 689999877754 367899999999999999888887766543111 1258999998544 4444434332
Q ss_pred hCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHH--------HHHhhhccCceEEEEcCcccccCcccHHHHHHHh
Q psy12466 455 LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIR--------AYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG 526 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~--------~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~ 526 (680)
...+... . .... ...+-..|...+.. ....-....+|+||||||-.+- .....+.+..
T Consensus 217 ~~~l~~~-----~-~~~~------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~a 282 (586)
T TIGR01447 217 VKNLAAA-----E-ALIA------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLKA 282 (586)
T ss_pred hcccccc-----h-hhhh------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHHh
Confidence 2111000 0 0000 00000111111100 0011112368999999999883 3455666777
Q ss_pred cccceEEEEeCCCCCCCHH
Q psy12466 527 LNIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 527 l~~~~rllLTgTP~~n~~~ 545 (680)
+....|++|.|=|.|--+.
T Consensus 283 l~~~~rlIlvGD~~QLpsV 301 (586)
T TIGR01447 283 LPPNTKLILLGDKNQLPSV 301 (586)
T ss_pred cCCCCEEEEECChhhCCCC
Confidence 7888899999998765433
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.11 Score=47.22 Aligned_cols=108 Identities=19% Similarity=0.141 Sum_probs=58.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+...++.-++|.|||..+-.++..+...+ .+++++........+.........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~------------------- 71 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPG-------APFLYLNASDLLEGLVVAELFGHF------------------- 71 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCC-------CCeEEEehhhhhhhhHHHHHhhhh-------------------
Confidence 456788899999999988877776665322 124444443333333222111100
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc-ccHHHHHHHhcc------cceEEEEeCCCCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG-KSKLYELMTGLN------IRKRILLSGTPLQN 542 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~-~s~~~~~l~~l~------~~~rllLTgTP~~n 542 (680)
. ..............++|+||++.+... .......+..+. ...++++++++...
T Consensus 72 -----------~--~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 72 -----------L--VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred -----------h--HhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 0 001111122345789999999987222 223334444442 45678888887664
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.016 Score=71.97 Aligned_cols=83 Identities=13% Similarity=0.219 Sum_probs=58.7
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCe--eEEeecCCc--c-hhh---hcccCCCCEEEEehhHHHHHHHhhhcCCCc
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRM--CPYHVNQKN--K-AED---YVYSRVSPVLIISYEMLIRAYQTIVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~--~~~~~~~~~--~-~~~---~~~~~~~~V~itsYe~l~~~~~~l~~~~~~ 263 (680)
.++|||||+.. +.||.++|+++.....+ ....+++.. . ... ......++|+|+|.+.+....+.+....++
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~ 203 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFD 203 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccC
Confidence 57999999655 67999999999854333 333333321 1 111 112345799999999998887777667799
Q ss_pred EEEEcCCCCCCC
Q psy12466 264 LLICDEKSLLKP 275 (680)
Q Consensus 264 ~vI~DEaH~lKN 275 (680)
++|+||||++-.
T Consensus 204 ~lVvDEaD~~L~ 215 (1176)
T PRK09401 204 FVFVDDVDAVLK 215 (1176)
T ss_pred EEEEEChHHhhh
Confidence 999999998753
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.018 Score=69.18 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=105.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
...||-|.++|.-.+ .+.-+++-..+|-||++.-- +-.+... +-+|||-|. +|+.--...
T Consensus 263 ~~FR~~Q~eaI~~~l---------~Gkd~fvlmpTG~GKSLCYQ--lPA~l~~--------gitvVISPL~SLm~DQv~~ 323 (941)
T KOG0351|consen 263 KGFRPNQLEAINATL---------SGKDCFVLMPTGGGKSLCYQ--LPALLLG--------GVTVVISPLISLMQDQVTH 323 (941)
T ss_pred ccCChhHHHHHHHHH---------cCCceEEEeecCCceeeEee--ccccccC--------CceEEeccHHHHHHHHHHh
Confidence 558999999998442 35778999999999997531 0001111 238999996 888655555
Q ss_pred HHHHhCCCCeeEeecCCcchhh----hhhhcC--CCCEEEEeHHHHHHHHHh---hhc----cCceEEEEcCcccccCc-
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAE----DYVYSR--VSPVLIISYEMLIRAYQT---IVD----TEFDLLICDEGHRLKNG- 516 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~----~~~~~~--~~~vvI~ty~~l~~~~~~---l~~----~~~~~vIlDEaH~~kn~- 516 (680)
+.. ..+....+++....... .....+ ...++-+|.+++...... +.. ....++|+||||....-
T Consensus 324 L~~--~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 324 LSK--KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred hhh--cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 522 23444455555444221 122223 567888999988653322 111 22689999999987432
Q ss_pred --ccHHHHHHHhc----ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCC
Q psy12466 517 --KSKLYELMTGL----NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLG 560 (680)
Q Consensus 517 --~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~ 560 (680)
-..-|+.+..+ ...-.++||||--..--.|+...|++-+|..+.
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK 451 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec
Confidence 22334444333 344679999999888888898888887777643
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.013 Score=67.44 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=55.5
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
..+|||||+. |..++.+++.++..... ....+++..............+|+|+|-+.+...... +.-...++||+
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 4689999965 56799999999975433 3444444332222222234578999999988655432 11234789999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 284 DEAd~mld~ 292 (545)
T PTZ00110 284 DEADRMLDM 292 (545)
T ss_pred ehHHhhhhc
Confidence 999998764
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.079 Score=62.96 Aligned_cols=135 Identities=22% Similarity=0.195 Sum_probs=82.9
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDE 450 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E 450 (680)
...|.+-|++++..+.. .+-.+|.-..|+|||..+-+++..+...++ ..++++++|+........|
T Consensus 321 ~~~l~~~Q~~Ai~~~~~---------~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-----~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ---------HKVVILTGGPGTGKTTITRAIIELAEELGG-----LLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHHHh---------CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----CceEEEEeCchHHHHHHHH
Confidence 34588999999987643 356899999999999988888777766542 1358889998766554443
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIR 530 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~ 530 (680)
. ++. ................ ... ..-.....++||+|||+.+. .....+.+..+...
T Consensus 387 ~---~g~---------~a~Tih~lL~~~~~~~-------~~~--~~~~~~~~~llIvDEaSMvd--~~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 387 V---TGL---------TASTIHRLLGYGPDTF-------RHN--HLEDPIDCDLLIVDESSMMD--TWLALSLLAALPDH 443 (720)
T ss_pred h---cCC---------ccccHHHHhhccCCcc-------chh--hhhccccCCEEEEeccccCC--HHHHHHHHHhCCCC
Confidence 2 111 0000000000000000 000 00012457899999999983 33455566667778
Q ss_pred eEEEEeCCCCCC
Q psy12466 531 KRILLSGTPLQN 542 (680)
Q Consensus 531 ~rllLTgTP~~n 542 (680)
.+++|-|=|-|-
T Consensus 444 ~rlilvGD~~QL 455 (720)
T TIGR01448 444 ARLLLVGDTDQL 455 (720)
T ss_pred CEEEEECccccc
Confidence 899999988665
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.016 Score=67.08 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=55.0
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~vI 266 (680)
.++|||||+- |..++.+++.+|..... +..++++..............+|+|+|-+.+...... +.-...++||
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lV 164 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICV 164 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeE
Confidence 4799999965 56799999999975443 4444444332222222234568999999988665432 2223467899
Q ss_pred EcCCCCCCC
Q psy12466 267 CDEKSLLKP 275 (680)
Q Consensus 267 ~DEaH~lKN 275 (680)
+||||++-+
T Consensus 165 iDEAh~lld 173 (572)
T PRK04537 165 LDEADRMFD 173 (572)
T ss_pred ecCHHHHhh
Confidence 999998854
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.026 Score=67.50 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=55.5
Q ss_pred CeEEEEEC-cccHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc--CCCcEEEEc
Q psy12466 193 LRVLIVTP-SSLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P-~sl~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~--~~~~~vI~D 268 (680)
.++|+|+| .+|..++.++|.++.+ ..++..+.|+..... .+....+|+|+|+|.+......-.. ...++||+|
T Consensus 68 ~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 68 GKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred CcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 47899999 5577899999998753 345666666543222 1224578999999988654432111 247999999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.|-++
T Consensus 145 E~H~l~d~ 152 (737)
T PRK02362 145 EVHLIDSA 152 (737)
T ss_pred CccccCCC
Confidence 99999764
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.049 Score=50.85 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=43.9
Q ss_pred CeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH-hhhcCCCcEEEEcCCC
Q psy12466 193 LRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEKS 271 (680)
Q Consensus 193 ~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-~l~~~~~~~vI~DEaH 271 (680)
.|+||+.|+-++. +|+.+-+.... +.+....... .......|-+++|.++-.... -....+|++|||||+|
T Consensus 34 ~rvLvL~PTRvva---~em~~aL~~~~--~~~~t~~~~~---~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH 105 (148)
T PF07652_consen 34 LRVLVLAPTRVVA---EEMYEALKGLP--VRFHTNARMR---THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECH 105 (148)
T ss_dssp --EEEEESSHHHH---HHHHHHTTTSS--EEEESTTSS-------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT
T ss_pred CeEEEecccHHHH---HHHHHHHhcCC--cccCceeeec---cccCCCcccccccHHHHHHhcCcccccCccEEEEeccc
Confidence 4899999998874 68888875443 2222221111 223456688999998865433 2333679999999999
Q ss_pred CC
Q psy12466 272 LL 273 (680)
Q Consensus 272 ~l 273 (680)
..
T Consensus 106 ~~ 107 (148)
T PF07652_consen 106 FT 107 (148)
T ss_dssp --
T ss_pred cC
Confidence 84
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.056 Score=48.71 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=63.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH-HhCCCCeeEeecCCcchhhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK-WLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~-~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
...+|.-.+|+|||..+..++..+.... ..++++.+......+...... ...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 55 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVG-------------------- 55 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhh--------------------
Confidence 5678889999999999998887766553 126777776555444333220 000
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH---------HHhcccceEEEEeCCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL---------MTGLNIRKRILLSGTP 539 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~---------l~~l~~~~rllLTgTP 539 (680)
...........+............+++|+||++.+.......... .........++++..+
T Consensus 56 --~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 56 --GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred --ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 000111122222333333334447999999999986655443322 1222445556666664
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.027 Score=63.78 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=55.0
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCC--CCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGL--TRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
.++|||+|+. |..++.++++.+... .++..++++...... ........+|+|+|.+++...... +.-...++||
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 4789999965 567899988887643 344555554332221 222234578999999998654331 1123468899
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||+|++.+.
T Consensus 243 iDEah~l~~~ 252 (475)
T PRK01297 243 LDEADRMLDM 252 (475)
T ss_pred echHHHHHhc
Confidence 9999998653
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.039 Score=65.43 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=94.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.+.+|-|.+|+=.+ ..++-+|--..+|.|||+.-+. .+.+...+.+......--.||+||+ .+..|-.+
T Consensus 386 ~k~~~IQ~qAiP~I---------msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r 456 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAI---------MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHR 456 (997)
T ss_pred CCCcchhhhhcchh---------ccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHH
Confidence 45667787776444 3467788889999999987533 3334333332211111126999997 66666666
Q ss_pred HHHHHh---CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh----hhc-cCceEEEEcCccccc--CcccH
Q psy12466 450 EFKKWL---GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT----IVD-TEFDLLICDEGHRLK--NGKSK 519 (680)
Q Consensus 450 E~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~----l~~-~~~~~vIlDEaH~~k--n~~s~ 519 (680)
++.+|+ +..-+++|.+............+ ..|+|+|...+...... +.+ .+..+||+|||.++- ...-+
T Consensus 457 ~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq 535 (997)
T KOG0334|consen 457 EVRKFLKLLGIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQ 535 (997)
T ss_pred HHHHHHhhcCceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcc
Confidence 666655 33344555555544443333333 88999998876543322 212 356799999999973 33455
Q ss_pred HHHHHHhcccce-EEEEeCCCC
Q psy12466 520 LYELMTGLNIRK-RILLSGTPL 540 (680)
Q Consensus 520 ~~~~l~~l~~~~-rllLTgTP~ 540 (680)
.++.+..+...+ -++.|||-.
T Consensus 536 ~~~Ii~nlrpdrQtvlfSatfp 557 (997)
T KOG0334|consen 536 ITRILQNLRPDRQTVLFSATFP 557 (997)
T ss_pred cchHHhhcchhhhhhhhhhhhh
Confidence 555666664433 356666643
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.069 Score=57.14 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=90.4
Q ss_pred CCCceEEEcCCCCChHHHHHH--HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh--CCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIA--LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL--GLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aia--li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~--~~~~v~~~~~~~~~~ 470 (680)
.+.-+|-...+|.|||+.-+. +++........+.-..-.+||+.|. -|..|-.-|..++- +...+++|.+..+..
T Consensus 256 QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e 335 (629)
T KOG0336|consen 256 QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE 335 (629)
T ss_pred cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh
Confidence 345678888999999986543 2221111111111112248999997 55577777776654 445667776665543
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccC--cccHHHHHHHhcccceEEEEeCCCCCCCHHH
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKN--GKSKLYELMTGLNIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn--~~s~~~~~l~~l~~~~rllLTgTP~~n~~~e 546 (680)
.- ....+..+++|++...|.+..- .+.-....++|+|||.++-. ..-+..+.+..++..+-.+||..-....+..
T Consensus 336 qi-e~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~Vrr 414 (629)
T KOG0336|consen 336 QI-EDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRR 414 (629)
T ss_pred HH-HHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHH
Confidence 32 2334578899999988865421 12223578999999999844 4566677777777666655554444443333
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.29 Score=57.51 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLG 456 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~ 456 (680)
.|...++.|.+.+.. ..-.+..||.-..|+|||..+..|+..+..........| -.|.. ..++.. ..
T Consensus 20 GQe~Vv~~L~~aL~~--gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC----G~C~s------Cr~I~~-G~ 86 (830)
T PRK07003 20 GQEHVVRALTHALDG--GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC----GVCRA------CREIDE-GR 86 (830)
T ss_pred CcHHHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC----cccHH------HHHHhc-CC
Confidence 466666665543211 111234478899999999999999988764322111001 12222 111111 00
Q ss_pred CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh----hccCceEEEEcCcccccCcc-cHHHHHHHhcccce
Q psy12466 457 LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLICDEGHRLKNGK-SKLYELMTGLNIRK 531 (680)
Q Consensus 457 ~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l----~~~~~~~vIlDEaH~~kn~~-s~~~~~l~~l~~~~ 531 (680)
...++.+...... +.+.++..++.. ...+|.++||||+|.+.+.. +.+.+.|..-....
T Consensus 87 h~DviEIDAas~r----------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 87 FVDYVEMDAASNR----------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred CceEEEecccccc----------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 1112222211110 112222222221 23468999999999995432 22334444445567
Q ss_pred EEEEeCCCCCCCHHHHHHHH
Q psy12466 532 RILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 532 rllLTgTP~~n~~~el~sll 551 (680)
+++|+.|-.+.=+.-+.|-+
T Consensus 151 ~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred EEEEEECChhhccchhhhhe
Confidence 78888886555444444443
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.11 Score=55.86 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=93.7
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
+-|..|+.-...+ .....++..+|.||++.--. -.+...+ -++||-|. .|+..-.+.+.+.
T Consensus 23 ~LQE~A~~c~VK~--------k~DVyVsMPTGaGKSLCyQL--PaL~~~g--------ITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 23 RLQEQAINCIVKR--------KCDVYVSMPTGAGKSLCYQL--PALVHGG--------ITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred hHHHHHHHHHHhc--------cCcEEEeccCCCchhhhhhc--hHHHhCC--------eEEEehHHHHHHHHHHHHHHhc
Confidence 3588999877653 46689999999999974211 1112222 27888886 6666666666553
Q ss_pred hCCCCeeEeecCCcc----hhh---hhh-hcCCCCEEEEeHHHHHH-----HHHhhhc-cCceEEEEcCcccccC-----
Q psy12466 455 LGLTRMCPYHVNQKN----KAE---DYV-YSRVSPVLIISYEMLIR-----AYQTIVD-TEFDLLICDEGHRLKN----- 515 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~----~~~---~~~-~~~~~~vvI~ty~~l~~-----~~~~l~~-~~~~~vIlDEaH~~kn----- 515 (680)
+|.+-...++- +.+ +.. ......++-+|.++... ....|.+ ....++++||||....
T Consensus 85 ----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDF 160 (641)
T KOG0352|consen 85 ----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDF 160 (641)
T ss_pred ----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhcccc
Confidence 33332222221 111 111 11233455555555432 2223332 3578999999998732
Q ss_pred -cccHHHHHHHhc-ccceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 516 -GKSKLYELMTGL-NIRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 516 -~~s~~~~~l~~l-~~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
++....-+++.. ..-.-++||||--..--+|+|..|.+-.|-.
T Consensus 161 RPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVA 205 (641)
T KOG0352|consen 161 RPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVA 205 (641)
T ss_pred CcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHH
Confidence 233333334332 3334589999998888889999988876653
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.081 Score=62.73 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=27.5
Q ss_pred CCCEEEEeHHHHHHHHHh-----hhccCceEEEEcCccccc
Q psy12466 479 VSPVLIISYEMLIRAYQT-----IVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~-----l~~~~~~~vIlDEaH~~k 514 (680)
..+|+||++..+..+... +.....+++||||||++-
T Consensus 219 ~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~ 259 (697)
T PRK11747 219 EADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLP 259 (697)
T ss_pred hCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchH
Confidence 457999999999877642 222347889999999994
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.028 Score=63.51 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=52.9
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHHH---HHhh-hcCCCcE
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRA---YQTI-VDTEFDL 264 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~~---~~~l-~~~~~~~ 264 (680)
.+|||+|+ +|+.++.+.+.... .....+.+....... ........+|+++|.|.+... ...+ ....+++
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~g--i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKASG--IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 58999996 45677888887643 344444433322211 122345578999999987542 2334 4567999
Q ss_pred EEEcCCCCCCCCC
Q psy12466 265 LICDEKSLLKPPS 277 (680)
Q Consensus 265 vI~DEaH~lKN~~ 277 (680)
||+||||++-.+.
T Consensus 131 iViDEaH~i~~~g 143 (470)
T TIGR00614 131 IAVDEAHCISQWG 143 (470)
T ss_pred EEEeCCcccCccc
Confidence 9999999997543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.056 Score=59.63 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=82.6
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCC----CCCccceEEEEecc-chHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPY----GMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~----~~~~~~~~LIV~P~-sll~qW~ 448 (680)
-|-|+.++--+++ .+..|...|+|.|||.. .|-++..+....+. ........+|++|+ -|..|-.
T Consensus 269 tpIqR~aipl~lQ---------~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIe 339 (673)
T KOG0333|consen 269 TPIQRQAIPLGLQ---------NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIE 339 (673)
T ss_pred chHHHhhccchhc---------cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHH
Confidence 3567777765544 47788899999999953 33333333322211 11112347999998 5667888
Q ss_pred HHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccc
Q psy12466 449 DEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 449 ~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~ 513 (680)
+|-.+|.-. .+++.+-|..+.....+.....+.++|.|...+..... .|...+..+||+|||.++
T Consensus 340 eEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrm 408 (673)
T KOG0333|consen 340 EETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRM 408 (673)
T ss_pred HHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhh
Confidence 888887633 33333333333344445556678999999998866443 344457899999999987
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.083 Score=61.35 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=82.4
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKK 453 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~ 453 (680)
-+.|+.|+.-.+. .+-++|.-.+|+|||.++..++..+....... ..++++++|+.-. ..-.+.+..
T Consensus 154 ~d~Qk~Av~~a~~---------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~---~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVALT---------RRISVISGGPGTGKTTTVAKLLAALIQLADGE---RCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHhc---------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCC---CcEEEEECCcHHHHHHHHHHHHh
Confidence 3689999976543 36789999999999999988888776532110 1358889998544 333333322
Q ss_pred HhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHH--------HHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 454 WLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIR--------AYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 454 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~--------~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
-....... . .... ....-..|...+.. ..+.-....+|+||+|||..+ ......+.+.
T Consensus 222 ~~~~~~~~-----~--~~~~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv--d~~lm~~ll~ 287 (615)
T PRK10875 222 ALRQLPLT-----D--EQKK-----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV--DLPMMARLID 287 (615)
T ss_pred hhhccccc-----h--hhhh-----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc--cHHHHHHHHH
Confidence 11111000 0 0000 00000011111100 001112235799999999988 3455666777
Q ss_pred hcccceEEEEeCCCCCCCH
Q psy12466 526 GLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 526 ~l~~~~rllLTgTP~~n~~ 544 (680)
.+....|++|-|=|-|--.
T Consensus 288 al~~~~rlIlvGD~~QL~s 306 (615)
T PRK10875 288 ALPPHARVIFLGDRDQLAS 306 (615)
T ss_pred hcccCCEEEEecchhhcCC
Confidence 8888899999999877533
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.14 Score=60.36 Aligned_cols=147 Identities=22% Similarity=0.176 Sum_probs=85.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|..-|++|+...+.. ... .++--=+|+|||.+..+++..+...+. ++|+.+=+ +.+.|-.-.
T Consensus 668 ~~LN~dQr~A~~k~L~a-------edy-~LI~GMPGTGKTTtI~~LIkiL~~~gk-------kVLLtsyThsAVDNILiK 732 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA-------EDY-ALILGMPGTGKTTTISLLIKILVALGK-------KVLLTSYTHSAVDNILIK 732 (1100)
T ss_pred hhcCHHHHHHHHHHHhc-------cch-heeecCCCCCchhhHHHHHHHHHHcCC-------eEEEEehhhHHHHHHHHH
Confidence 37889999999877653 122 344445899999999999999888774 68888876 556776655
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcC-CCCEEEEeHHHHHHHHHh---------------hhccCceEEEEcCccccc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSR-VSPVLIISYEMLIRAYQT---------------IVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~vvI~ty~~l~~~~~~---------------l~~~~~~~vIlDEaH~~k 514 (680)
+..+-- .+...|....-........ ...--+.+|+.+.+.++. +....||++|+|||-.+-
T Consensus 733 L~~~~i---~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 733 LKGFGI---YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred HhccCc---ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEccccccc
Confidence 555421 1222222221111110000 111223334444333221 345579999999997764
Q ss_pred CcccHHHHHHHhcccceEEEEeCCCCC
Q psy12466 515 NGKSKLYELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 515 n~~s~~~~~l~~l~~~~rllLTgTP~~ 541 (680)
-+- ++.-+.-..+++|-|-+.|
T Consensus 810 lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 810 LPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred cch-----hhhhhhhcceEEEeccccc
Confidence 332 3444556667888887654
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.056 Score=63.78 Aligned_cols=120 Identities=20% Similarity=0.165 Sum_probs=71.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~ 448 (680)
..++-|.-|.--|. .|.|.-..+|-|||++|...+......|. .+-||+|+..+ ..|.
T Consensus 80 ~~~dvQlig~l~l~-----------~G~iaEm~TGEGKTLvA~l~a~l~al~G~-------~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 80 RPFDVQIIGGIVLH-----------EGNIAEMKTGEGKTLTATLPVYLNALTGK-------GVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred CCchhHHHHHHHHh-----------cCCcccccCCCCCcHHHHHHHHHHHHcCC-------CeEEEeccHHHHHhhHHHH
Confidence 34556776664441 46677799999999998765555555543 38999998655 4566
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-----HH----HHhhhccCceEEEEcCcccc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-----RA----YQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-----~~----~~~l~~~~~~~vIlDEaH~~ 513 (680)
..+-++++ +++.+..+.......... -.++|+-+|-..+. .. .+......++++|+||+..+
T Consensus 142 ~~~~~~LG-l~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 142 GELYRWLG-LTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred HHHHHhcC-CeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhe
Confidence 66666655 445544443333222222 24566665544443 21 12233457889999999876
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.042 Score=62.93 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=53.9
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.++|||+|+. |..++.++++.+..... ...+.++..............+|+|+|.+.+...... +.-....+||+
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lVi 276 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVL 276 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEe
Confidence 4799999976 56789999998874333 3333333322222112224578999999988654432 22244778999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-..
T Consensus 277 DEad~ml~~ 285 (518)
T PLN00206 277 DEVDCMLER 285 (518)
T ss_pred ecHHHHhhc
Confidence 999998654
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.36 Score=52.94 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=97.8
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc--hHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS--LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s--ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.-.++.-.+|.|||.++.-++..+...... ...++.+|+-.. .-..|+ ++.|...+.+.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~---~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD---KSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc---CCCeEEEEeccCccHHHHHH--HHHHhhcCCcce-------------
Confidence 346677899999999998888776543210 012455555542 112222 444443322221
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccH---HHHHHHhcc--cceEEEEeCCCCCCCHHHHHHH
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK---LYELMTGLN--IRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~---~~~~l~~l~--~~~rllLTgTP~~n~~~el~sl 550 (680)
.+..+++.+......+ ..+++||+|++.+....... ..+.+.... ....++|+||-=++.+.+.+.-
T Consensus 237 ------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 237 ------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 1222455555544444 46899999999987533222 222222222 2466999999999999988887
Q ss_pred HhhhCCCC-----------CCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeee
Q psy12466 551 NDFANPGV-----------LGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR 607 (680)
Q Consensus 551 l~fl~p~~-----------l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRr 607 (680)
+..+.+.. +|..=.+......|+..-.... .....+..-....|.+.+-.|-++-
T Consensus 309 ~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq--~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 309 FSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQ--IVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred hcCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCC--CChhhhhhCCHHHHHHHhcCCCccc
Confidence 76665443 2223344444455554433211 1111222333455555665565543
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.056 Score=64.02 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=53.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEc
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~D 268 (680)
.++++|+|. +|..++.+++.++.. +.++....|+..... .. ....+|+|+|+|.+......-. -..+++||+|
T Consensus 66 ~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~-~~--~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViD 142 (674)
T PRK01172 66 LKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPP-DF--IKRYDVVILTSEKADSLIHHDPYIINDVGLIVAD 142 (674)
T ss_pred CcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCh-hh--hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEe
Confidence 478999995 567889999998753 244555555432211 11 2456999999998755433111 1347899999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.+.+.
T Consensus 143 EaH~l~d~ 150 (674)
T PRK01172 143 EIHIIGDE 150 (674)
T ss_pred cchhccCC
Confidence 99999764
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.058 Score=64.33 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=54.5
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~D 268 (680)
.++|+|+|.. |+.++.++|.+|.. ..++..++|+..... .+....+|+|+|+|.+......-. -...++||+|
T Consensus 69 ~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 69 GKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred CeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 4799999955 56789999988753 245555655543221 123457899999998865443110 1357899999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.+-+.
T Consensus 146 E~H~l~~~ 153 (720)
T PRK00254 146 EIHLIGSY 153 (720)
T ss_pred CcCccCCc
Confidence 99999654
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.031 Score=65.55 Aligned_cols=77 Identities=13% Similarity=0.231 Sum_probs=54.0
Q ss_pred eEEEEECcccH-HHHHHHHHHHhCC--CCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCcEEE
Q psy12466 194 RVLIVTPSSLT-SNWNDEFKKWLGL--TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P~sl~-~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI 266 (680)
++||++|+..+ .||.++|++|++. .++..++++....... .......+|+|.|...+..... + .+.++||
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~-~--~~l~lvV 362 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE-F--KRLALVI 362 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc-c--cccceEE
Confidence 78999997665 7999999999963 5566666654432221 2233457899999988753221 2 3578999
Q ss_pred EcCCCCC
Q psy12466 267 CDEKSLL 273 (680)
Q Consensus 267 ~DEaH~l 273 (680)
+||+|++
T Consensus 363 IDEaH~f 369 (630)
T TIGR00643 363 IDEQHRF 369 (630)
T ss_pred Eechhhc
Confidence 9999986
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.12 Score=60.79 Aligned_cols=149 Identities=19% Similarity=0.139 Sum_probs=96.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh--CCCCeeEeecCCcchhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL--GLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~--~~~~v~~~~~~~~~~~~ 472 (680)
.+...++...+-.|||..+.-++....+... .+-++.|+|. +++.|=..++..-+ +.....+..-..-.+..
T Consensus 525 r~eSavIVAPTSaGKTfisfY~iEKVLResD-----~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEY 599 (1330)
T KOG0949|consen 525 RNESAVIVAPTSAGKTFISFYAIEKVLRESD-----SDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEY 599 (1330)
T ss_pred cccceEEEeeccCCceeccHHHHHHHHhhcC-----CCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHh
Confidence 4567889999999999999888888777654 2458889996 78888887775443 22111111111111111
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhh-hc----cCceEEEEcCcccccCcc-cHHHHHHHhcccceEEEEeCCCCCCCHHH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTI-VD----TEFDLLICDEGHRLKNGK-SKLYELMTGLNIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l-~~----~~~~~vIlDEaH~~kn~~-s~~~~~l~~l~~~~rllLTgTP~~n~~~e 546 (680)
.. ....++|.||-.+-+....-.- .. .+..+||+||+|.+.+.. ......+-.+-..-.++||||- +++..
T Consensus 600 si-np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~LSATi--gN~~l 676 (1330)
T KOG0949|consen 600 SI-NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVLSATI--GNPNL 676 (1330)
T ss_pred cC-CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCeeEEeccc--CCHHH
Confidence 11 1346889999999887644321 01 246799999999998864 4455555555666779999994 55555
Q ss_pred HHHHHh
Q psy12466 547 FFYLND 552 (680)
Q Consensus 547 l~sll~ 552 (680)
++-.++
T Consensus 677 ~qkWln 682 (1330)
T KOG0949|consen 677 FQKWLN 682 (1330)
T ss_pred HHHHHH
Confidence 554444
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.042 Score=68.40 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=58.0
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCC--e---eEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTR--M---CPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEF 262 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~--~---~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~ 262 (680)
.++|||+|+.- ..|+.++|++++.... . ..++++....... .......+|+|+|...+......+.. .+
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~ 200 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KF 200 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CC
Confidence 47999999665 5789999999985322 2 2344543322211 12234578999999999887776665 89
Q ss_pred cEEEEcCCCCCCC
Q psy12466 263 DLLICDEKSLLKP 275 (680)
Q Consensus 263 ~~vI~DEaH~lKN 275 (680)
+++|+||||++-.
T Consensus 201 ~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 201 DFIFVDDVDALLK 213 (1171)
T ss_pred CEEEEeChHhhhh
Confidence 9999999999865
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.061 Score=60.67 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=90.3
Q ss_pred CceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhC---CCCeeEeecCCcchhh
Q psy12466 398 EGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAE 472 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~---~~~v~~~~~~~~~~~~ 472 (680)
-.-|+-.-.|+|||+.- ++.+..+-.... . --.+||+|+ -+.-|-++-|.+.++ +++..+|-|.......
T Consensus 63 mDliVQaKSGTGKTlVfsv~av~sl~~~~~--~---~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d 137 (980)
T KOG4284|consen 63 MDLIVQAKSGTGKTLVFSVLAVESLDSRSS--H---IQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLD 137 (980)
T ss_pred cceEEEecCCCCceEEEEeeeehhcCcccC--c---ceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhh
Confidence 34688889999999873 333333322221 1 127999998 455777777887776 3455556555443322
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcccH---HHHHHHhc-ccceEEEEeCCCCCCCHHH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKSK---LYELMTGL-NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s~---~~~~l~~l-~~~~rllLTgTP~~n~~~e 546 (680)
........|+|.|...+...++. +.-...+++|+|||..+-...+- ....+..+ ..+-.++.|||=-+| +.+
T Consensus 138 -~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ldn 215 (980)
T KOG4284|consen 138 -LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-LDN 215 (980)
T ss_pred -hhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-HHH
Confidence 22334567999999998776542 33346789999999998664433 33445555 455678999996544 444
Q ss_pred H
Q psy12466 547 F 547 (680)
Q Consensus 547 l 547 (680)
+
T Consensus 216 ~ 216 (980)
T KOG4284|consen 216 L 216 (980)
T ss_pred H
Confidence 3
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.21 Score=49.51 Aligned_cols=135 Identities=20% Similarity=0.255 Sum_probs=78.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
.+|.-..|.|||.++.-+++.+...+ +++.+||--.---.=.++++.|...+.+.++........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~-------~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~-------- 68 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG-------KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDP-------- 68 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---------EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCH--------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc-------ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhh--------
Confidence 35677899999999999998888773 246666654333333355555554444544443221111
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHh----c-ccceEEEEeCCCCCCCHHHHHHHHhhh
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG----L-NIRKRILLSGTPLQNDLQEFFYLNDFA 554 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~----l-~~~~rllLTgTP~~n~~~el~sll~fl 554 (680)
-+.+.+..+.+...++|+|++|-+-+..+... ....+.. + ....-++|++|--+..+.++......+
T Consensus 69 -------~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~-~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 69 -------AEIAREALEKFRKKGYDLVLIDTAGRSPRDEE-LLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp -------HHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHH-HHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHHHHhhcCCCEEEEecCCcchhhHH-HHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 11233334455566799999999876543322 2222222 2 445679999998777777666665655
Q ss_pred CCC
Q psy12466 555 NPG 557 (680)
Q Consensus 555 ~p~ 557 (680)
.+.
T Consensus 141 ~~~ 143 (196)
T PF00448_consen 141 GID 143 (196)
T ss_dssp STC
T ss_pred cCc
Confidence 444
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.68 Score=49.52 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=35.9
Q ss_pred CceEEEEcCcccccCccc-HHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCC
Q psy12466 501 EFDLLICDEGHRLKNGKS-KLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVL 559 (680)
Q Consensus 501 ~~~~vIlDEaH~~kn~~s-~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l 559 (680)
.+.++|+||+|.+..... ...+.+.......+++++++....-+..+-+-+..+.-..+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 588999999999843222 12223333345567888888766655666665544443333
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.26 Score=58.28 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=86.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHH-HHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCC--eeEeecCCcchh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIW-TLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTR--MCPYHVNQKNKA 471 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~-~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~--v~~~~~~~~~~~ 471 (680)
.+.++|.+..++-|||+.+=-++. .....+ +.+|.+.|- +.+..=..++..|.-+.- +-.|.|....
T Consensus 239 e~~nliys~Pts~gktlvaeilml~~~l~~r-------r~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p-- 309 (1008)
T KOG0950|consen 239 ERKNLIYSLPTSAGKTLVAEILMLREVLCRR-------RNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPP-- 309 (1008)
T ss_pred cccceEEeCCCccchHHHHHHHHHHHHHHHh-------hceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCC--
Confidence 568899999999999998744333 222222 237888885 555555566666654332 2233322111
Q ss_pred hhhhhcCCCCEEEEeHHHHHHHHHhhhcc----CceEEEEcCcccccCc--ccHHHHHHHhc----ccc--eEEEEeCCC
Q psy12466 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDT----EFDLLICDEGHRLKNG--KSKLYELMTGL----NIR--KRILLSGTP 539 (680)
Q Consensus 472 ~~~~~~~~~~vvI~ty~~l~~~~~~l~~~----~~~~vIlDEaH~~kn~--~s~~~~~l~~l----~~~--~rllLTgTP 539 (680)
......-.+.|+|-++....++.+... ..++||+||-|.+... +.-.-..+.++ ... ..++||||-
T Consensus 310 --~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi 387 (1008)
T KOG0950|consen 310 --EKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATI 387 (1008)
T ss_pred --CCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeeccc
Confidence 112234579999999988877766543 4679999999998443 22222222222 122 369999998
Q ss_pred CCCCHHHHH
Q psy12466 540 LQNDLQEFF 548 (680)
Q Consensus 540 ~~n~~~el~ 548 (680)
-+|.+-.-|
T Consensus 388 ~N~~lL~~~ 396 (1008)
T KOG0950|consen 388 PNNSLLQDW 396 (1008)
T ss_pred CChHHHHHH
Confidence 777655443
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.033 Score=59.06 Aligned_cols=141 Identities=19% Similarity=0.142 Sum_probs=70.9
Q ss_pred ceEEEcCCCCChHHH----HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh--------CCCCeeEeec
Q psy12466 399 GAILADEMGLGKTLQ----CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL--------GLTRMCPYHV 465 (680)
Q Consensus 399 g~iLaDemGlGKT~~----aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~--------~~~~v~~~~~ 465 (680)
..|=-.-+|.|||++ +|.|+..-...-|.......--|||||+ -|..|-.+-+..|+ |.++..+--|
T Consensus 209 DmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciG 288 (610)
T KOG0341|consen 209 DMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIG 288 (610)
T ss_pred ceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Confidence 333335589999986 3444433222111110000114999998 55566666666665 3333332222
Q ss_pred CCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-h-hccCceEEEEcCcccccCcc--cHHHHHHHhccc-ceEEEEeCCC
Q psy12466 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-I-VDTEFDLLICDEGHRLKNGK--SKLYELMTGLNI-RKRILLSGTP 539 (680)
Q Consensus 466 ~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-l-~~~~~~~vIlDEaH~~kn~~--s~~~~~l~~l~~-~~rllLTgTP 539 (680)
....+..-..-.....++++|...+...... . .-.-..++.+|||.++-.-. ........-+++ +..++.|||.
T Consensus 289 G~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM 367 (610)
T KOG0341|consen 289 GVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM 367 (610)
T ss_pred CccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc
Confidence 2222221112223456888888877654322 1 11235689999999974422 222222222333 3358999995
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.52 Score=49.53 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=72.1
Q ss_pred HHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceE-EEEecc-chHHHHHHHHHHHhCC
Q psy12466 380 QGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKV-LIVTPS-SLTSNWNDEFKKWLGL 457 (680)
Q Consensus 380 ~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~-LIV~P~-sll~qW~~E~~~~~~~ 457 (680)
++++.|-+-+..-....-.+-+|.-+.|.|||..+=.|..........+.. ..|+ +|-+|. .-.......+-..++-
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~-~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAE-RIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCc-cccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 445544433222222334678888999999999776666544322211111 1244 445554 4556666666554321
Q ss_pred CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc-cCcccHHHHH---HHhcccce--
Q psy12466 458 TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL-KNGKSKLYEL---MTGLNIRK-- 531 (680)
Q Consensus 458 ~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~-kn~~s~~~~~---l~~l~~~~-- 531 (680)
. +....+ ....-......+...+..++||||.|++ .+...+.-.. ++.|....
T Consensus 123 P----~~~~~~-----------------~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 123 P----YRPRDR-----------------VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred c----cCCCCC-----------------HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 0 111000 0111122345677889999999999996 4443443333 33443332
Q ss_pred EEEEeCCC
Q psy12466 532 RILLSGTP 539 (680)
Q Consensus 532 rllLTgTP 539 (680)
-+++.||+
T Consensus 182 piV~vGt~ 189 (302)
T PF05621_consen 182 PIVGVGTR 189 (302)
T ss_pred CeEEeccH
Confidence 26777887
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.16 Score=52.61 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=23.1
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..+.+|.-++|+|||..|-+++..+...+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 34578999999999999988887765543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.055 Score=59.62 Aligned_cols=84 Identities=8% Similarity=0.033 Sum_probs=51.2
Q ss_pred CCeEEEEECccc-HHHHHHHHHHHhCCCCee--EEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEE
Q psy12466 192 ILRVLIVTPSSL-TSNWNDEFKKWLGLTRMC--PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI 266 (680)
..++||++|..- ..++.+.+........+. ...++..............+|+|+|.+.+..... .+.-..+++||
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvV 175 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFI 175 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEE
Confidence 347999999654 567777777766433332 2333322211111122346899999998765433 22234589999
Q ss_pred EcCCCCCCC
Q psy12466 267 CDEKSLLKP 275 (680)
Q Consensus 267 ~DEaH~lKN 275 (680)
+||+|++-.
T Consensus 176 iDEah~~~~ 184 (401)
T PTZ00424 176 LDEADEMLS 184 (401)
T ss_pred EecHHHHHh
Confidence 999999865
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.13 Score=60.26 Aligned_cols=128 Identities=25% Similarity=0.294 Sum_probs=75.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
-++=..||+|||...+-++....... ..++|+|.-. +++.+-...|+...-. ....|........ ...
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~~------~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i----~~~ 120 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKNP------DKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYII----DGR 120 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccCC------CCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccc----ccc
Confidence 35668999999998888776654321 1357888764 7878877777653211 1222322221111 112
Q ss_pred CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc-cc-------HHHHHHHhc--ccceEEEEeCCC
Q psy12466 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG-KS-------KLYELMTGL--NIRKRILLSGTP 539 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~-~s-------~~~~~l~~l--~~~~rllLTgTP 539 (680)
.++-+++..+.+.+....+. .+||+|||||+-.+-+. .| .....+..+ +++..++|-||-
T Consensus 121 ~~~rLivqIdSL~R~~~~~l-~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDGSLL-DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred ccCeEEEEehhhhhcccccc-cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 46788888888876544322 24999999997543221 11 112222222 677888888875
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.55 Score=54.50 Aligned_cols=44 Identities=18% Similarity=0.041 Sum_probs=29.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|...++.|.+.+.. ..-.+..|+.-..|+|||..|.+++..+..
T Consensus 20 Qe~vv~~L~~aI~~--grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALER--GRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 55555555443221 112345589999999999999999888754
|
|
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.19 Score=58.86 Aligned_cols=84 Identities=17% Similarity=0.102 Sum_probs=51.3
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHH----HHHHHHHhcC----------------CC--
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI----ALIWTLLRQG----------------PY-- 427 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~ai----ali~~~~~~~----------------~~-- 427 (680)
+-.+.+|-|+.-...++.++. ...+|+|-+.+|+|||+.-| |+...+.... +.
T Consensus 18 fP~qpY~~Q~a~M~rvl~~L~-----~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~ 92 (945)
T KOG1132|consen 18 FPFQPYPTQLAFMTRVLSCLD-----RKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDS 92 (945)
T ss_pred ccCCcchHHHHHHHHHHHHHH-----HhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccC
Confidence 444567778777666666542 34669999999999999743 3333333110 00
Q ss_pred --------CCC----ccceEEEEecc--chHHHHHHHHHHHhCCC
Q psy12466 428 --------GMP----VIRKVLIVTPS--SLTSNWNDEFKKWLGLT 458 (680)
Q Consensus 428 --------~~~----~~~~~LIV~P~--sll~qW~~E~~~~~~~~ 458 (680)
+.| ...|.++.+.. +-+.|=.+|+.+..-..
T Consensus 93 ~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~v 137 (945)
T KOG1132|consen 93 GGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRV 137 (945)
T ss_pred CCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCC
Confidence 011 12356777775 34788889998875433
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.081 Score=56.33 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=29.2
Q ss_pred cCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCC
Q psy12466 500 TEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 500 ~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~ 541 (680)
..-.+||+||||++. .....-.+.+.-..-++.+||-|-|
T Consensus 350 l~~~FiIIDEaQNLT--pheikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 350 LPDSFIIIDEAQNLT--PHELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred cccceEEEehhhccC--HHHHHHHHHhccCCCEEEEcCCHHH
Confidence 345689999999983 3344445566677789999998855
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.18 Score=59.83 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=65.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.|.|--..+|=|||+++...+....-.| +.+-||+++. |. ..|...+-+|++. .+.+...........
T Consensus 99 ~G~IAEM~TGEGKTL~atlpaylnAL~G-------kgVhVVTvNdYLA~RDae~m~~vy~~LGL-tvg~i~~~~~~~err 170 (939)
T PRK12902 99 EGQIAEMKTGEGKTLVATLPSYLNALTG-------KGVHVVTVNDYLARRDAEWMGQVHRFLGL-SVGLIQQDMSPEERK 170 (939)
T ss_pred CCceeeecCCCChhHHHHHHHHHHhhcC-------CCeEEEeCCHHHHHhHHHHHHHHHHHhCC-eEEEECCCCChHHHH
Confidence 5777789999999998654333222232 2388898884 44 7899999999875 444433222222222
Q ss_pred hhhcCCCCEEEEeHHHH-----HHHHHh----hhccCceEEEEcCcccc
Q psy12466 474 YVYSRVSPVLIISYEML-----IRAYQT----IVDTEFDLLICDEGHRL 513 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l-----~~~~~~----l~~~~~~~vIlDEaH~~ 513 (680)
..-.++|+.+|-..+ +..+.. .....++++|+||+..+
T Consensus 171 --~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 171 --KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred --HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 122567777765555 333322 23457889999999876
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.083 Score=60.19 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=53.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hc--ccCCCCEEEEehhHHHHHHHhhhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YV--YSRVSPVLIISYEMLIRAYQTIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~ 267 (680)
+++||++|. +|..++.+.|++.++ .++.++++.-...... +. .....+|+|.|...+.. .-.++++||+
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf~-----p~~~l~lIIV 99 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALFL-----PFKNLGLIIV 99 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHcC-----cccCCCEEEE
Confidence 479999995 577899999999886 5677777654332221 11 23456899999886631 1235799999
Q ss_pred cCCCCCC
Q psy12466 268 DEKSLLK 274 (680)
Q Consensus 268 DEaH~lK 274 (680)
||.|..-
T Consensus 100 DEeh~~s 106 (505)
T TIGR00595 100 DEEHDSS 106 (505)
T ss_pred ECCCccc
Confidence 9999753
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.08 Score=62.99 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=58.7
Q ss_pred CeEEEEEC-cccHHHHHHHHHHHh-CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc--CCCcEEEEc
Q psy12466 193 LRVLIVTP-SSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P-~sl~~nW~~E~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~--~~~~~vI~D 268 (680)
.+++-||| .+|...=.+||.+|- -+.++..+.|+..... .+...++|+|||||.+-...+.-.. ...++||+|
T Consensus 77 ~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViD 153 (766)
T COG1204 77 GKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVID 153 (766)
T ss_pred CcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEe
Confidence 47899999 567778888999553 2367777777764332 2236789999999998654443222 458999999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.|...
T Consensus 154 EiH~l~d~ 161 (766)
T COG1204 154 EIHLLGDR 161 (766)
T ss_pred eeeecCCc
Confidence 99999887
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.77 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.1
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.-|+.-..|+|||..+..++..+...
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34788999999999999999888753
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.3 Score=50.58 Aligned_cols=45 Identities=22% Similarity=0.102 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..+.+.+. ...-.. -++.-..|+|||..|..++..+...
T Consensus 20 Gq~~v~~~L~~~~~---~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 20 GQAPVVRALSNALD---QQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCHHHHHHHHHHHH---hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 46666666655432 122233 4788999999999999999887654
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.5 Score=45.83 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
+.|.+|.-++|+|||..+.+++..+...+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45688999999999999999999988764
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.078 Score=58.00 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc----hH---HHHHHHHHHHhCCC---CeeEeec
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS----LT---SNWNDEFKKWLGLT---RMCPYHV 465 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s----ll---~qW~~E~~~~~~~~---~v~~~~~ 465 (680)
++.-.++.-|+|.|||.|.=-++........ ..|.|... .+ ..-.+|+.--.+.. .+..-.-
T Consensus 61 ~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--------~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC 132 (699)
T KOG0925|consen 61 NNQIIVLVGETGSGKTTQIPQFVLEYELSHL--------TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDC 132 (699)
T ss_pred cCceEEEEecCCCCccccCcHHHHHHHHhhc--------cceeecCchHHHHHHHHHHHHHHhccccchhcccccccccc
Confidence 4567889999999999998777665544332 36666531 11 12222222111110 0000000
Q ss_pred CCcchhhhhhhcCCCCEEEEeHHHHHHH-HHhhhccCceEEEEcCcccccCcccHHHHHHHhc--------ccceEEEEe
Q psy12466 466 NQKNKAEDYVYSRVSPVLIISYEMLIRA-YQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL--------NIRKRILLS 536 (680)
Q Consensus 466 ~~~~~~~~~~~~~~~~vvI~ty~~l~~~-~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--------~~~~rllLT 536 (680)
.+......+ +|-.++.+. +..-.-.+|.++|+||||. .+..+..+..+ ..-..++||
T Consensus 133 ~~~~T~Lky----------~tDgmLlrEams~p~l~~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmS 198 (699)
T KOG0925|consen 133 TSPNTLLKY----------CTDGMLLREAMSDPLLGRYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMS 198 (699)
T ss_pred CChhHHHHH----------hcchHHHHHHhhCcccccccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEee
Confidence 011111111 222222221 1212224799999999994 34444444433 222459999
Q ss_pred CCCCCCCHHHHHHHHhhh
Q psy12466 537 GTPLQNDLQEFFYLNDFA 554 (680)
Q Consensus 537 gTP~~n~~~el~sll~fl 554 (680)
+|-.-..+..+|.=.-++
T Consensus 199 atl~a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 199 ATLDAEKFQRYFGNAPLL 216 (699)
T ss_pred cccchHHHHHHhCCCCee
Confidence 999888887777644444
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.12 Score=60.09 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=25.4
Q ss_pred EEEEehhHHHHHHH--hhhcCCCcEEEEcCCCCC
Q psy12466 242 VLIISYEMLIRAYQ--TIVDTEFDLLICDEKSLL 273 (680)
Q Consensus 242 V~itsYe~l~~~~~--~l~~~~~~~vI~DEaH~l 273 (680)
|+..+|..+-+... ...-..||+||||||||-
T Consensus 283 vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRT 316 (1518)
T COG4889 283 VVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRT 316 (1518)
T ss_pred EEEEcccchHHHHHHHHcCCCCccEEEecchhcc
Confidence 88899998866443 444477999999999985
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.42 Score=48.04 Aligned_cols=44 Identities=18% Similarity=-0.024 Sum_probs=30.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
+..++..|.+.. ........+|.-+.|+|||..+.+++......
T Consensus 22 ~~~~~~~l~~~~---~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 22 NAELLAALRQLA---AGKGDRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred cHHHHHHHHHHH---hcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 445555554421 12345678888999999999999888776654
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.16 Score=57.75 Aligned_cols=145 Identities=22% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-----hHHHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-----LTSNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-----ll~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
.+.-.|+.-|+|.|||.|.=-++... |... .+.+-+.=|.- +..-=.+|..--.+..-...+.
T Consensus 65 ~nqvlIviGeTGsGKSTQipQyL~ea---G~~~---~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR------ 132 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQIPQYLAEA---GFAS---SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR------ 132 (674)
T ss_pred HCCEEEEEcCCCCCccccHhHHHHhc---cccc---CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE------
Confidence 45789999999999999987766432 2111 12233334432 2233334443322321111111
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHHHHHHhc---ccc-eEEEEeCCCCCCCHH
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLYELMTGL---NIR-KRILLSGTPLQNDLQ 545 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l---~~~-~rllLTgTP~~n~~~ 545 (680)
.++ .......|..+|-.++.+.+-. -.-.++++||+||||.=.-.+--+.-.++++ +.. +.+++|||---..+.
T Consensus 133 Fed-~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS 211 (674)
T KOG0922|consen 133 FED-STSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFS 211 (674)
T ss_pred ecc-cCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHH
Confidence 111 0112455888888888765432 1124699999999995211222222233333 333 569999999877777
Q ss_pred HHHHHHhh
Q psy12466 546 EFFYLNDF 553 (680)
Q Consensus 546 el~sll~f 553 (680)
++|+-...
T Consensus 212 ~yF~~a~i 219 (674)
T KOG0922|consen 212 EYFNNAPI 219 (674)
T ss_pred HHhcCCce
Confidence 77765443
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.14 Score=51.64 Aligned_cols=133 Identities=11% Similarity=0.191 Sum_probs=80.3
Q ss_pred EEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH---HHHhCCCCeeEeecCCcchhhhhh
Q psy12466 401 ILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF---KKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 401 iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~---~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
+--.-.|+|||.. +++.+..+.... .--.+||+|.+ .|..|-.+|. .++.|+.++.++.|.-..+.....
T Consensus 83 lcqaksgmgktavfvl~tlqqiepv~-----g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~ 157 (387)
T KOG0329|consen 83 LCQAKSGMGKTAVFVLATLQQIEPVD-----GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEEL 157 (387)
T ss_pred heecccCCCceeeeehhhhhhcCCCC-----CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHH
Confidence 3345679999975 444444333221 12358999997 5667776665 555689888888776554443333
Q ss_pred hcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccCcccHHHHHHHhc-----ccceEEEEeCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----NIRKRILLSGTP 539 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----~~~~rllLTgTP 539 (680)
......|++.|...+..... .+.-......|+||+..+-. .-...+-+..+ ..+....+|||-
T Consensus 158 lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle-~lDMrRDvQEifr~tp~~KQvmmfsatl 227 (387)
T KOG0329|consen 158 LKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE-QLDMRRDVQEIFRMTPHEKQVMMFSATL 227 (387)
T ss_pred HhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH-HHHHHHHHHHHhhcCcccceeeeeeeec
Confidence 33456788999888755432 23333567899999986532 22223333333 334457888885
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.25 Score=57.25 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc--hH---HHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS--LT---SNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s--ll---~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
.+.-.|+|-++|.|||.|.=-|+....-..+... ..+=+=|-=|.- .+ .--..|+..+-......+.. .+
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~-~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf-d~--- 344 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSS-SPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF-DG--- 344 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCC-CCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe-cc---
Confidence 4567999999999999998877754322221110 001123333432 22 22233444311111111111 11
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHH-hhhccCceEEEEcCcccccCcccHHH-HHHH--------------hcccceEEE
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEGHRLKNGKSKLY-ELMT--------------GLNIRKRIL 534 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~-~l~~~~~~~vIlDEaH~~kn~~s~~~-~~l~--------------~l~~~~rll 534 (680)
.......|-++|-..+.+.+. .+.-.++.+||+||||.= +-++... -.+. +++.-.-++
T Consensus 345 ----ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLII 419 (1172)
T KOG0926|consen 345 ----TIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLII 419 (1172)
T ss_pred ----ccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEE
Confidence 011245688898888876553 344457999999999952 2222211 1111 112334599
Q ss_pred EeCCCCCCCHHH
Q psy12466 535 LSGTPLQNDLQE 546 (680)
Q Consensus 535 LTgTP~~n~~~e 546 (680)
||||---.++.|
T Consensus 420 MSATLRVsDFte 431 (1172)
T KOG0926|consen 420 MSATLRVSDFTE 431 (1172)
T ss_pred EeeeEEeccccc
Confidence 999985555544
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.9 Score=48.93 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=64.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc----chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS----SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~----sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.-.++.-..|.|||.++..++..+...+. +++++... ....||.....+. .+.++........
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~-------~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~dp-- 207 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGF-------SVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGADP-- 207 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------eEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCCH--
Confidence 34667789999999998888887766542 36666543 3446665444432 1222211110000
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----ccceEEEEeCCCCCCCH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----NIRKRILLSGTPLQNDL 544 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----~~~~rllLTgTP~~n~~ 544 (680)
...+............|+||+|.|++..+.... ...+..+ .....+++++|.-++.+
T Consensus 208 -------------~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~l-m~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 208 -------------AAVAYDAIEHAKARGIDVVLIDTAGRMHTDANL-MDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred -------------HHHHHHHHHHHHhCCCCEEEEECCCccCCcHHH-HHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 011122222333456899999999988644333 2233332 23345788887644333
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.62 Score=47.55 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+..++..+.+.. ........+|.-..|+|||..+.+++......+
T Consensus 28 ~n~~a~~~l~~~~---~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~ 73 (235)
T PRK08084 28 DNDSLLAALQNAL---RQEHSGYIYLWSREGAGRSHLLHAACAELSQRG 73 (235)
T ss_pred ccHHHHHHHHHHH---hCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 3455555554321 122345788999999999999988887766543
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.091 Score=58.83 Aligned_cols=133 Identities=19% Similarity=0.231 Sum_probs=82.0
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
.|-|+.++-.++. ++.++-+..+|.|||+.-+. ++..+...........-+.+|+.|. .|..|-..|+.
T Consensus 160 t~iq~~aipvfl~---------~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~ 230 (593)
T KOG0344|consen 160 TPIQKQAIPVFLE---------KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMR 230 (593)
T ss_pred Ccccchhhhhhhc---------ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHH
Confidence 3568888877755 36788889999999876433 3334433321111223468999996 78899999999
Q ss_pred HHh--CCCCeeEeecCCc--ch-hhhhhhcCCCCEEEEeHHHHHHHHHh----hhccCceEEEEcCcccccCc
Q psy12466 453 KWL--GLTRMCPYHVNQK--NK-AEDYVYSRVSPVLIISYEMLIRAYQT----IVDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 453 ~~~--~~~~v~~~~~~~~--~~-~~~~~~~~~~~vvI~ty~~l~~~~~~----l~~~~~~~vIlDEaH~~kn~ 516 (680)
++. +............ .. .........++++|.|...+...+.. +.-.....+|+|||..+..+
T Consensus 231 k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 231 KYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred hcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 987 3322222111111 11 11122233567888888887665543 22235678999999999877
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.084 Score=64.26 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=51.5
Q ss_pred CeEEEEECccc-HHHHHH-------HHHHHh-------CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--
Q psy12466 193 LRVLIVTPSSL-TSNWND-------EFKKWL-------GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-- 255 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~-------E~~k~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-- 255 (680)
-++|+|+|+-- ..++.+ ++.+|+ +..++.+.+|+..............+|+|||.|++.....
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~ 164 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP 164 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh
Confidence 36899999654 445544 454554 2345566666654333322223457899999999864332
Q ss_pred ----hhhcCCCcEEEEcCCCCCCCC
Q psy12466 256 ----TIVDTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 256 ----~l~~~~~~~vI~DEaH~lKN~ 276 (680)
.+ .+.++||+||+|.+-+.
T Consensus 165 ~~~~~l--~~l~~VVIDE~H~l~~~ 187 (876)
T PRK13767 165 KFREKL--RTVKWVIVDEIHSLAEN 187 (876)
T ss_pred hHHHHH--hcCCEEEEechhhhccC
Confidence 12 24688999999999754
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.6 Score=51.03 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
+.-.+|.-++|.|||..++.++..+...+ .++|+|.-.....|......++--..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g-------~~VlYvs~EEs~~qi~~Ra~rlg~~~------------------ 136 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRADRLGIST------------------ 136 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcC-------CeEEEEECCcCHHHHHHHHHHcCCCc------------------
Confidence 44567889999999999999988776653 25888876655555554444431000
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.++.+.....+......+...+.++||||+.+.+.
T Consensus 137 ---~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 ---ENLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ---ccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 11222222223333444556789999999999874
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.93 E-value=1 Score=52.64 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=29.8
Q ss_pred cHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..|.+.+. ...-.. .|+.-+.|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~~l~---~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALD---LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 5555555554432 112233 4788999999999999999887664
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.18 Score=59.82 Aligned_cols=119 Identities=22% Similarity=0.274 Sum_probs=69.5
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~~ 449 (680)
.++-|.-|.--| ..|.|.-..+|-|||+++...+....-.| +.+-||+++.-+ .+|..
T Consensus 77 ~ydvQlig~l~L-----------~~G~IaEm~TGEGKTL~a~l~ayl~aL~G-------~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 77 HFDVQLIGGLVL-----------NDGKIAEMKTGEGKTLVATLPAYLNALTG-------KGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred CCchHhhhhHhh-----------cCCccccccCCCCchHHHHHHHHHHHhcC-------CceEEEeCCHHHHHHHHHHHH
Confidence 445577665333 25677778999999997654443222233 248999998444 77999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHH-----HHHH----HhhhccCceEEEEcCcccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRAY----QTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l-----~~~~----~~l~~~~~~~vIlDEaH~~ 513 (680)
.+-+|++. .+.+.............+ .++|+-+|-..+ +..+ .......+.++|+||+..+
T Consensus 139 pvy~~LGL-svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 139 QIYRFLGL-TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHHHHcCC-ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 99999884 444433322222222222 345555544332 2221 1223456899999999875
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.097 Score=60.99 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCCCCeEEEEEC-cccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh-------hhcC
Q psy12466 189 RSYILRVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-------IVDT 260 (680)
Q Consensus 189 ~~~~~~~LIV~P-~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~-------l~~~ 260 (680)
...+||+|-.+= .+|+.|=..+|+.+.|......+..+... ...+.|.|.+|-++...... +...
T Consensus 212 ~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g 284 (875)
T COG4096 212 SGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPG 284 (875)
T ss_pred cchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCC
Confidence 346788998886 77788888899999996555544433221 12578999999999764432 3335
Q ss_pred CCcEEEEcCCCCCCCCCCCCCccccCCCCCCceecc
Q psy12466 261 EFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDS 296 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LT 296 (680)
.||+||+|||||=- .+.++++..--+..+++||
T Consensus 285 ~FDlIvIDEaHRgi---~~~~~~I~dYFdA~~~gLT 317 (875)
T COG4096 285 FFDLIVIDEAHRGI---YSEWSSILDYFDAATQGLT 317 (875)
T ss_pred ceeEEEechhhhhH---HhhhHHHHHHHHHHHHhhc
Confidence 59999999999721 2223344444444566775
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.76 Score=47.20 Aligned_cols=66 Identities=23% Similarity=0.243 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
+.|..++..+.+.... ......+.+|.-.+|+|||..+.+++..+...+. +++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~-~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~-------~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEE-FDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK-------SVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHh-hccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC-------eEEEE----EHHHHHHHHHH
Confidence 3466676665543211 1222357889999999999999999998877653 35555 24566665554
|
|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.11 Score=54.93 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=35.6
Q ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHh--------ch------------hhHHHHHHHHHHhccCccccCCCCCcc
Q psy12466 620 RETLLVCRATPLQQSLYLRCVEYWDARA--------SR------------DSHLSVTHALRKICNHPGLVQQPDMME 676 (680)
Q Consensus 620 ~e~~v~v~ms~~Q~~lY~~l~~~~~~~~--------~~------------~~~l~~l~~LRqicnHP~L~~~~~~~~ 676 (680)
.++.+.++|+..|+++|+.++......+ .. ..+-..+.+|+.+|+||+|+-+-.|++
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk 80 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPK 80 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcc
Confidence 3678999999999999999987554333 00 223446678999999999976665543
|
The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.1 Score=49.02 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=74.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cc---hHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SS---LTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~s---ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
+...|.-..|.|||.++..++..+...+. ++++|.- .. .+.||..-.. ...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-------kVglI~aDt~RiaAvEQLk~yae----~lg-------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-------TVGFITTDHSRIGTVQQLQDYVK----TIG-------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC-------cEEEEecCCcchHHHHHHHHHhh----hcC--------------
Confidence 34567788999999999998887765542 3555554 32 4466653222 111
Q ss_pred hhhcCCCCEE-EEeHHHHHHHHHhhhc-cCceEEEEcCcccccCcccHHHHH---HHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 474 YVYSRVSPVL-IISYEMLIRAYQTIVD-TEFDLLICDEGHRLKNGKSKLYEL---MTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 474 ~~~~~~~~vv-I~ty~~l~~~~~~l~~-~~~~~vIlDEaH~~kn~~s~~~~~---l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
.+++ ..+...+.+.+..+.. .++|+||+|-+=+..+........ +.... ....+.|+||--.+.+.++
T Consensus 297 ------ipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i 370 (436)
T PRK11889 297 ------FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 370 (436)
T ss_pred ------CcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHH
Confidence 1122 2234445555555543 368999999987654332222222 21112 2234778888777777777
Q ss_pred HHHHhhhCCC
Q psy12466 548 FYLNDFANPG 557 (680)
Q Consensus 548 ~sll~fl~p~ 557 (680)
...++.+..+
T Consensus 371 ~~~F~~~~id 380 (436)
T PRK11889 371 ITNFKDIHID 380 (436)
T ss_pred HHHhcCCCCC
Confidence 7776665444
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.5 Score=52.67 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=22.3
Q ss_pred Cce-EEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 398 EGA-ILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 398 ~g~-iLaDemGlGKT~~aiali~~~~~~ 424 (680)
... |+.-+.|+|||..+-.|+..+...
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 445 789999999999999999877643
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.14 Score=59.64 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=53.6
Q ss_pred eEEEEEC-cccHHHHHHHHHHHhCCCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHH--HHHhhhcCCCcEEE
Q psy12466 194 RVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P-~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~--~~~~l~~~~~~~vI 266 (680)
.+|||+| .+|+.++.+.++.. + ..+..++++...... ........++++++.|.+.. ....+.....++||
T Consensus 55 ~~lVisPl~sL~~dq~~~l~~~-g-i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 55 LTVVISPLISLMKDQVDQLRAA-G-VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred cEEEEcCCHHHHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 5799999 45667888888874 2 344444444322211 12233567899999998853 33456667899999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||.+-.+
T Consensus 133 iDEaH~i~~~ 142 (591)
T TIGR01389 133 VDEAHCVSQW 142 (591)
T ss_pred EeCCcccccc
Confidence 9999999653
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.2 Score=59.77 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=52.4
Q ss_pred CeEEEEECcccH-HHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH--------HhhhcCCC
Q psy12466 193 LRVLIVTPSSLT-SNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY--------QTIVDTEF 262 (680)
Q Consensus 193 ~~~LIV~P~sl~-~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~--------~~l~~~~~ 262 (680)
-++||+||+--+ .+=.++++++.. ..++.++.|+.....+... ....+|+|+|-+++.... ..+. +.
T Consensus 82 ~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l 158 (742)
T TIGR03817 82 ATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA-REHARYVLTNPDMLHRGILPSHARWARFLR--RL 158 (742)
T ss_pred cEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH-hcCCCEEEEChHHHHHhhccchhHHHHHHh--cC
Confidence 479999996554 566777887752 3456666666543322222 234689999999885321 1122 46
Q ss_pred cEEEEcCCCCCCC
Q psy12466 263 DLLICDEKSLLKP 275 (680)
Q Consensus 263 ~~vI~DEaH~lKN 275 (680)
++||+||+|++..
T Consensus 159 ~~vViDEah~~~g 171 (742)
T TIGR03817 159 RYVVIDECHSYRG 171 (742)
T ss_pred CEEEEeChhhccC
Confidence 8899999999865
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.3 Score=49.89 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.|...+..|.+.+.. ..-+...++.-+.|.|||..|..++..+...
T Consensus 22 GQe~iv~~L~~~i~~--~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 22 HQDLAIGALQNALKS--GKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred ChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 466666555443211 1112235899999999999999998877654
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.083 Score=62.53 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=53.0
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCC--CCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCcEEE
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGL--TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI 266 (680)
++||++|+.. ..|..+.|++|++. .++..++|+....... .......+|+|.|.+.+.... .+ .+.++||
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v-~~--~~l~lvV 388 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV-EF--HNLGLVI 388 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc-hh--cccceEE
Confidence 7899999766 56899999999864 4555666654322211 223345789999988774321 12 3578999
Q ss_pred EcCCCCC
Q psy12466 267 CDEKSLL 273 (680)
Q Consensus 267 ~DEaH~l 273 (680)
+||+|++
T Consensus 389 IDE~Hrf 395 (681)
T PRK10917 389 IDEQHRF 395 (681)
T ss_pred Eechhhh
Confidence 9999997
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.47 Score=49.10 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=25.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+.+|.-.+|+|||..+.++...+...+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 357789999999999999999988777655
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.14 Score=59.73 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=51.6
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHH--HHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~--~~~~l~~~~~~~v 265 (680)
..+|||+|. +|+.+|.+.+... + .....+.+....... .........+++++-|.+.. ....+...+++++
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~-g-i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~i 143 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN-G-VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALL 143 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc-C-CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEE
Confidence 368999995 5566787887764 2 333333333221111 11223456788899888753 3445666789999
Q ss_pred EEcCCCCCCCC
Q psy12466 266 ICDEKSLLKPP 276 (680)
Q Consensus 266 I~DEaH~lKN~ 276 (680)
|+||||.+-.+
T Consensus 144 VIDEaH~i~~~ 154 (607)
T PRK11057 144 AVDEAHCISQW 154 (607)
T ss_pred EEeCccccccc
Confidence 99999998754
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.32 Score=51.21 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
+.+.+|.-++|+|||..|.+++..+...+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34678889999999999988888877654
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.3 Score=49.35 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=72.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHH-hcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~-~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
+-.++.-..|.|||.+++.++..+. ..+. .++.+|.-..--..=.+++..|.....+.++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g------~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~------------ 283 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGK------KKVALITLDTYRIGAVEQLKTYAKIMGIPVEV------------ 283 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCC------CeEEEEECCccHHHHHHHHHHHHHHhCCceEc------------
Confidence 3456667899999999998888776 3321 23555554321000012333332211111111
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc------ccceEEEEeCCCCCCCHHHHHHH
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL------NIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l------~~~~rllLTgTP~~n~~~el~sl 550 (680)
..+...+...+..+. .+|+||||-+-+...... ....+..+ .....++|++|.-.+.+.+++..
T Consensus 284 -------~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~-~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 284 -------VYDPKELAKALEQLR--DCDVILIDTAGRSQRDKR-LIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred -------cCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHH-HHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 112222333333333 589999999876533222 22222222 23457999999988888888888
Q ss_pred HhhhCCC
Q psy12466 551 NDFANPG 557 (680)
Q Consensus 551 l~fl~p~ 557 (680)
+..+.+.
T Consensus 354 f~~~~~~ 360 (424)
T PRK05703 354 FSRLPLD 360 (424)
T ss_pred hCCCCCC
Confidence 8877653
|
|
| >KOG1131|consensus | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.72 Score=51.20 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=43.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch--HHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL--TSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl--l~qW~~E~ 451 (680)
.+|-|.. +|.+-- ..-..++.|+|-...|+|||+.-++++..+....|.. -+-||-|...+ +..-..|+
T Consensus 17 iYPEQ~~---YM~elK--rsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~----~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 17 IYPEQYE---YMRELK--RSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE----HRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCHHHHH---HHHHHH--HhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc----cceEEEecCcchHHHHHHHHH
Confidence 5666654 444321 1224567899999999999999999887776655431 12477787543 34444444
Q ss_pred H
Q psy12466 452 K 452 (680)
Q Consensus 452 ~ 452 (680)
+
T Consensus 88 ~ 88 (755)
T KOG1131|consen 88 K 88 (755)
T ss_pred H
Confidence 3
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.17 Score=54.59 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=78.5
Q ss_pred cCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHH---HHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 404 DEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNW---NDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 404 DemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW---~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
.-+|.|||..-+. .+..++... . ..-+.||+.|+ -|..|- ..++.+++..-..+.+++.+..... .....
T Consensus 65 artgsgktaaf~ipm~e~Lk~~s-~---~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf-~~l~~ 139 (529)
T KOG0337|consen 65 ARTGSGKTAAFLIPMIEKLKSHS-Q---TGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQF-ILLNE 139 (529)
T ss_pred eecCCcchhhHHHHHHHHHhhcc-c---cccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHH-HHhcc
Confidence 4589999976433 333343332 1 12368999997 454544 4455555554445555655433322 22334
Q ss_pred CCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccC--cccHHHHHHHhccc-ceEEEEeCCC
Q psy12466 479 VSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKN--GKSKLYELMTGLNI-RKRILLSGTP 539 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn--~~s~~~~~l~~l~~-~~rllLTgTP 539 (680)
..|++|+|...+...... +.-....+||+|||.++-. ..-+..+.+.++.. .-.+++|||-
T Consensus 140 npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 140 NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred CCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 678999888766422111 2223477999999999833 45667777778743 4579999995
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.25 Score=56.25 Aligned_cols=148 Identities=23% Similarity=0.311 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-------chHHHHHHHHHHHhCCCCeeEeecCCc
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-------SLTSNWNDEFKKWLGLTRMCPYHVNQK 468 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-------sll~qW~~E~~~~~~~~~v~~~~~~~~ 468 (680)
.+.-.|+.-|+|.|||.|.--++. ..|- +.. -+|.|.. ++...-.+|+.--.+.. |. |.
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~---edGY-~~~----GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~-VG-Ys---- 435 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLY---EDGY-ADN----GMIGCTQPRRVAAISVAKRVAEEMGVTLGDT-VG-YS---- 435 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHH---hccc-ccC----CeeeecCchHHHHHHHHHHHHHHhCCccccc-cc-eE----
Confidence 456788999999999999765553 3321 111 2666642 22234444443222221 10 00
Q ss_pred chhhhhhhcCCCCEEEEeHHHHHHH-HHhhhccCceEEEEcCcccccCcccHHHHHHHhcccce----EEEEeCCCCCCC
Q psy12466 469 NKAEDYVYSRVSPVLIISYEMLIRA-YQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK----RILLSGTPLQND 543 (680)
Q Consensus 469 ~~~~~~~~~~~~~vvI~ty~~l~~~-~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~----rllLTgTP~~n~ 543 (680)
.+.++.- .....|=.+|-..+.+. +..-.-.++.+||+||||.=.-..-...-.++...+++ .++.|||.--..
T Consensus 436 IRFEdvT-~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~k 514 (1042)
T KOG0924|consen 436 IRFEDVT-SEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQK 514 (1042)
T ss_pred EEeeecC-CCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHH
Confidence 0000000 01122334444444332 11111236889999999963222222333333333333 378889987777
Q ss_pred HHHHHH-HHhhhCCCC
Q psy12466 544 LQEFFY-LNDFANPGV 558 (680)
Q Consensus 544 ~~el~s-ll~fl~p~~ 558 (680)
+.++|. .=.|--|+.
T Consensus 515 f~nfFgn~p~f~IpGR 530 (1042)
T KOG0924|consen 515 FSNFFGNCPQFTIPGR 530 (1042)
T ss_pred HHHHhCCCceeeecCC
Confidence 777776 334555554
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.35 Score=52.63 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=51.4
Q ss_pred eEEEEECc-ccHHHHHHHHHHHh----CCCCeeEEeecCCcchh--hh--------------------cccCCCCEEEEe
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWL----GLTRMCPYHVNQKNKAE--DY--------------------VYSRVSPVLIIS 246 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~----~~~~~~~~~~~~~~~~~--~~--------------------~~~~~~~V~its 246 (680)
++++++|. +|..+|.+.+++++ +...+.+.+.++..... .. .......+++|+
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 57999995 46788888888887 22344444444431110 00 011245689999
Q ss_pred hhHHHHHHHhh---h-------cCCCcEEEEcCCCCCCCC
Q psy12466 247 YEMLIRAYQTI---V-------DTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 247 Ye~l~~~~~~l---~-------~~~~~~vI~DEaH~lKN~ 276 (680)
++++....... . -...++||+||+|.+...
T Consensus 121 p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~ 160 (357)
T TIGR03158 121 PDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAK 160 (357)
T ss_pred HHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcc
Confidence 99986533211 0 135799999999999753
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.2 Score=64.23 Aligned_cols=83 Identities=17% Similarity=0.367 Sum_probs=57.0
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCC----CCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGL----TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~ 263 (680)
.++|||+|+. |+.|..+.|++++.. .++..++++.....+. ......++|+|+|=+.+......+....++
T Consensus 123 ~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~ 202 (1638)
T PRK14701 123 KKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFD 202 (1638)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCC
Confidence 4799999965 467899999998742 2334444443322221 122345789999999887666555557799
Q ss_pred EEEEcCCCCCCC
Q psy12466 264 LLICDEKSLLKP 275 (680)
Q Consensus 264 ~vI~DEaH~lKN 275 (680)
++|+||||++-.
T Consensus 203 ~iVVDEAD~ml~ 214 (1638)
T PRK14701 203 FIFVDDVDAFLK 214 (1638)
T ss_pred EEEEECceeccc
Confidence 999999998853
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.24 Score=51.58 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=78.3
Q ss_pred ceEEE-cCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 399 GAILA-DEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 399 g~iLa-DemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
.-||| .--|+|||-.- |-.+..+..... .=-.+|++|. .+. +|-..++.++++ ..+.+..|...-+.+
T Consensus 123 rdiLaRaKNGTGKT~a~~IP~Lekid~~~~-----~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDD 196 (459)
T KOG0326|consen 123 RDILARAKNGTGKTAAYCIPVLEKIDPKKN-----VIQAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDD 196 (459)
T ss_pred hhhhhhccCCCCCccceechhhhhcCcccc-----ceeEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccc
Confidence 34555 56799999653 223322222111 1126899996 332 677788888777 455555554443333
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcccH--HHHHHHhc-ccceEEEEeCCC
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGKSK--LYELMTGL-NIRKRILLSGTP 539 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~s~--~~~~l~~l-~~~~rllLTgTP 539 (680)
-........++|.|...+....+.-. -....++|+|||..+-....+ ..+.+.-+ +.+..++.|||-
T Consensus 197 I~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATF 268 (459)
T KOG0326|consen 197 IMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATF 268 (459)
T ss_pred eeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEeccc
Confidence 22233456688999888765543311 124678999999998654332 33344444 455668888884
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.22 Score=58.90 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=53.3
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hc--ccCCCCEEEEehhHHHHHHHhhhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YV--YSRVSPVLIISYEMLIRAYQTIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~ 267 (680)
+++||+||.. |..+|.+.|+++++ .++.++++........ +. .....+|+|.|.+.+. +.-.++++||+
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVv 264 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARFG-APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIV 264 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhC-CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEE
Confidence 5799999965 67899999999887 5777777764432222 11 2245689999987652 11235899999
Q ss_pred cCCCCCC
Q psy12466 268 DEKSLLK 274 (680)
Q Consensus 268 DEaH~lK 274 (680)
||+|...
T Consensus 265 DEeh~~s 271 (679)
T PRK05580 265 DEEHDSS 271 (679)
T ss_pred ECCCccc
Confidence 9999653
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.37 Score=50.32 Aligned_cols=44 Identities=23% Similarity=0.149 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
+|...|.-|.+.+.. .....-++--.+|+|||-++.+|+..+..
T Consensus 40 gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 798889888776432 45566788889999999999999988765
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.74 Score=52.75 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=76.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~ 451 (680)
.|+|+|++-+..|.. ++-.++.-.=..|||..+.+++....-..+ ...+++++|..-. ..=-+.+
T Consensus 59 ~L~p~Q~~i~~~~~~---------~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----~~~v~i~A~~~~QA~~vF~~i 124 (534)
T PHA02533 59 QMRDYQKDMLKIMHK---------NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----DKNVGILAHKASMAAEVLDRT 124 (534)
T ss_pred CCcHHHHHHHHHHhc---------CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHH
Confidence 488999998877632 233466677789999988766544433222 1258888885211 1111333
Q ss_pred HHHh---CCC-CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHh-
Q psy12466 452 KKWL---GLT-RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG- 526 (680)
Q Consensus 452 ~~~~---~~~-~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~- 526 (680)
+... |.. ...+.. ... ..........|.+.+-+ .+.......+++|+||+|.+++.. ....++..
T Consensus 125 k~~ie~~P~l~~~~i~~-~~~---~~I~l~NGS~I~~lss~-----~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~ 194 (534)
T PHA02533 125 KQAIELLPDFLQPGIVE-WNK---GSIELENGSKIGAYASS-----PDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPV 194 (534)
T ss_pred HHHHHhCHHHhhcceee-cCc---cEEEeCCCCEEEEEeCC-----CCccCCCCCceEEEeccccCCCHH-HHHHHHHHH
Confidence 3222 221 100000 000 00101112222222211 233456678899999999987643 23333322
Q ss_pred cc--cceEEEEeCCCC-CCCHHHHHH
Q psy12466 527 LN--IRKRILLSGTPL-QNDLQEFFY 549 (680)
Q Consensus 527 l~--~~~rllLTgTP~-~n~~~el~s 549 (680)
+. ...++.+..||- .|+.-++|.
T Consensus 195 lasg~~~r~iiiSTp~G~n~fye~~~ 220 (534)
T PHA02533 195 ISSGRSSKIIITSTPNGLNHFYDIWT 220 (534)
T ss_pred HHcCCCceEEEEECCCchhhHHHHHH
Confidence 22 224688888884 244444443
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.083 Score=58.32 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=73.7
Q ss_pred eEEEEEC-cccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEEc
Q psy12466 194 RVLIVTP-SSLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICD 268 (680)
Q Consensus 194 ~~LIV~P-~sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~D 268 (680)
++|+++| .-|+.|=..-|.+.++ ...+..+.|.-....+...| ....|++.|=.++.++.. .+.-..+.++|+|
T Consensus 60 kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifD 138 (542)
T COG1111 60 KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFD 138 (542)
T ss_pred eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEec
Confidence 6788888 4667777778888874 35566666665554444443 356899999999988764 4555679999999
Q ss_pred CCCCCCCCCCCCCccccCCCCCCceeccCCCCCCCCC
Q psy12466 269 EKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKR 305 (680)
Q Consensus 269 EaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~~~~~~~ 305 (680)
||||----.+-..-|-.-++......+.|+.+.|-..
T Consensus 139 EAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~ 175 (542)
T COG1111 139 EAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSD 175 (542)
T ss_pred hhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCC
Confidence 9999754444443333344555555566666666544
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.3 Score=45.15 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=21.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
...+|.-+.|+|||.-+-+++..+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 567899999999999988877666544
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.49 Score=49.88 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.1
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+|.-.+|+|||..|-+++..+...+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3468899999999999999988776554
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.85 Score=54.58 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=74.6
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHH-HHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTS-NWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~-qW~~E 450 (680)
..|-+-|++++..+.. ..+-.+|....|+|||..+-+++..+...+. ++++++|+.... ...+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~--------s~~~~il~G~aGTGKTtll~~i~~~~~~~g~-------~V~~~ApTg~Aa~~L~~~ 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG--------SGDIAVVVGRAGTGKSTMLKAAREAWEAAGY-------RVIGAALSGKAAEGLQAE 415 (744)
T ss_pred CCCCHHHHHHHHHHhc--------CCCEEEEEecCCCCHHHHHHHHHHHHHhCCC-------eEEEEeCcHHHHHHHHhc
Confidence 3578899999987743 1346789999999999888877766665542 588899986553 23221
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccCcccHHHHHHHhc-
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNGKSKLYELMTGL- 527 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l- 527 (680)
.+. ... |-..+..... ...-...++||+|||..+.. ....+.+...
T Consensus 416 ----~g~---------~a~----------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~--~~~~~Ll~~~~ 464 (744)
T TIGR02768 416 ----SGI---------ESR----------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS--RQMARVLKEAE 464 (744)
T ss_pred ----cCC---------cee----------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH--HHHHHHHHHHH
Confidence 110 000 0000100000 00123678999999998843 3333444322
Q ss_pred ccceEEEEeCCCCCC
Q psy12466 528 NIRKRILLSGTPLQN 542 (680)
Q Consensus 528 ~~~~rllLTgTP~~n 542 (680)
....+++|-|=|-|-
T Consensus 465 ~~~~kliLVGD~~QL 479 (744)
T TIGR02768 465 EAGAKVVLVGDPEQL 479 (744)
T ss_pred hcCCEEEEECChHHc
Confidence 466789999966544
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=92.75 E-value=1 Score=48.34 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=34.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.++..++..+..-+... ...+.+.+|.-++|+|||..+.|++..+...+
T Consensus 161 ~~~~~~~~~~~~~~f~~~f-~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENF-DKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred HHHHHHHHHHHHHHHHHHH-hccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 4445556665444322212 23457888999999999999999999888765
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=3.5 Score=46.71 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=29.7
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...++.+.+.+.. ..-.+.-++.-..|+|||..|..++..+...
T Consensus 18 Qe~vv~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 18 QDVLVRILRNAFTL--NKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred cHHHHHHHHHHHHc--CCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 55555555443211 2234568889999999999998888766543
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.32 Score=47.17 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=37.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHH
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 454 (680)
.++.-++|+|||..++.++......+. +++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~-------~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE-------PGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC-------cEEEEECCCCHHHHHHHHHHc
Confidence 367889999999999999888776553 489998877777766666554
|
A related protein is found in archaea. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.78 Score=47.47 Aligned_cols=50 Identities=34% Similarity=0.419 Sum_probs=39.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.+.+.+|.-.+|.|||..++|+...+...+. +++++.-+.++.+++..+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~-------sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI-------SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC-------eEEEEEHHHHHHHHHHHHh
Confidence 6788999999999999999999999985543 4777766667766666554
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.65 Score=55.14 Aligned_cols=119 Identities=20% Similarity=0.215 Sum_probs=69.1
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~ 449 (680)
.++-|.-|.--|. .|.|--..+|=|||++|..-+....-.| +.+-||+.+ .|. ..|..
T Consensus 79 ~ydVQliGglvLh-----------~G~IAEMkTGEGKTLvAtLpayLnAL~G-------kgVhVVTvNdYLA~RDae~mg 140 (925)
T PRK12903 79 PYDVQIIGGIILD-----------LGSVAEMKTGEGKTITSIAPVYLNALTG-------KGVIVSTVNEYLAERDAEEMG 140 (925)
T ss_pred cCchHHHHHHHHh-----------cCCeeeecCCCCccHHHHHHHHHHHhcC-------CceEEEecchhhhhhhHHHHH
Confidence 4455776664442 4667778999999998654332222222 237777776 444 78999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH---------HhhhccCceEEEEcCcccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY---------QTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~---------~~l~~~~~~~vIlDEaH~~ 513 (680)
.+-+|++.. +.+.............+ .++|+-+|-..|.-++ +......++++|+||+..+
T Consensus 141 ~vy~fLGLs-vG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 141 KVFNFLGLS-VGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHHHHhCCc-eeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 999998853 33332221111111112 3677766655543321 2233457888999998876
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.88 Score=49.39 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=31.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|.+++..+...+.. ....+.-++.-+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~--grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYRE--GKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHc--CCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 45556666554321 1223357788999999999999999888763
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.25 Score=53.60 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=52.9
Q ss_pred CCeEEEEEC-cccHHHHHHHHHHHhCCCCeeEEeecCCcch-----------hhh---cc----cCCCCEEEEehhHHHH
Q psy12466 192 ILRVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA-----------EDY---VY----SRVSPVLIISYEMLIR 252 (680)
Q Consensus 192 ~~~~LIV~P-~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~-----------~~~---~~----~~~~~V~itsYe~l~~ 252 (680)
..++++|+| .+|+.++.+.+..+++. .+..+++...... ... .. ....+|+++|.+.+..
T Consensus 29 ~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~ 107 (358)
T TIGR01587 29 ADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLK 107 (358)
T ss_pred CCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHH
Confidence 458999999 56788999999998863 4444444321000 000 00 1235799999998765
Q ss_pred HHHh--------hhcCCCcEEEEcCCCCCCC
Q psy12466 253 AYQT--------IVDTEFDLLICDEKSLLKP 275 (680)
Q Consensus 253 ~~~~--------l~~~~~~~vI~DEaH~lKN 275 (680)
.... +......+||+||+|.+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~ 138 (358)
T TIGR01587 108 SVFGEFGHYEFTLASIANSLLIFDEVHFYDE 138 (358)
T ss_pred HHhcccchHHHHHHHhcCCEEEEeCCCCCCH
Confidence 4332 2233457899999999875
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.57 Score=48.42 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~ 422 (680)
.+.+++..+...+ ....+-.+|.-+.|+|||..+-.++..+.
T Consensus 27 ~~~~~~~~l~~~~----~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 27 GHKRAMAYLEYGL----SQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHHH----hcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4455666554321 12233477899999999988877765543
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.62 Score=56.06 Aligned_cols=141 Identities=20% Similarity=0.210 Sum_probs=78.1
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWNDE 450 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~E 450 (680)
++-|.-|---|. .|-|-=..+|=|||++|..-+....-.|. .+-||+.+ .|. ..|...
T Consensus 140 ydVQLiGgivLh-----------~G~IAEM~TGEGKTLvatlp~yLnAL~G~-------gVHvVTvNDYLA~RDaewm~p 201 (1025)
T PRK12900 140 YDVQLIGGIVLH-----------SGKISEMATGEGKTLVSTLPTFLNALTGR-------GVHVVTVNDYLAQRDKEWMNP 201 (1025)
T ss_pred cchHHhhhHHhh-----------cCCccccCCCCCcchHhHHHHHHHHHcCC-------CcEEEeechHhhhhhHHHHHH
Confidence 345776664442 45666689999999987533322222221 25666665 555 889999
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHH-----HHH----HHhhhccCceEEEEcCcccccCcccHHH
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRA----YQTIVDTEFDLLICDEGHRLKNGKSKLY 521 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l-----~~~----~~~l~~~~~~~vIlDEaH~~kn~~s~~~ 521 (680)
+-+|++.. |.+.........+.. .-.+||+-+|-..| +.+ .+.+....+.+.|+||+..+-=
T Consensus 202 ~y~flGLt-Vg~i~~~~~~~~Rr~--aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLI------ 272 (1025)
T PRK12900 202 VFEFHGLS-VGVILNTMRPEERRE--QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLI------ 272 (1025)
T ss_pred HHHHhCCe-eeeeCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhh------
Confidence 99998854 333322211111111 12355555543333 222 2234456899999999985411
Q ss_pred HHHHhcccceEEEEeCCCCCCCHHHHH
Q psy12466 522 ELMTGLNIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 522 ~~l~~l~~~~rllLTgTP~~n~~~el~ 548 (680)
. .++.-+++||. +.+...++|
T Consensus 273 ---D--eARTPLIISgp-~~~~~~~~y 293 (1025)
T PRK12900 273 ---D--EARTPLIISGP-VPNADNSKF 293 (1025)
T ss_pred ---c--cccCceEEeCC-CCCcchHHH
Confidence 1 34455889984 334334333
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.37 E-value=2.1 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.6
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.-||.-..|+|||..+..|+..+.-
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3578899999999999999988764
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.43 Score=54.31 Aligned_cols=98 Identities=20% Similarity=0.212 Sum_probs=65.6
Q ss_pred ccCcccHHHHHHHHHhhhhh---ccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDL---ASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWND 449 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~---~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~ 449 (680)
..+...++++.|.+.+.... ......|.+|+-.+|+|||+.|-+++..... +++-|-...++..|.-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~----------~fi~v~~~~l~sk~vG 318 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS----------RFISVKGSELLSKWVG 318 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC----------eEEEeeCHHHhccccc
Confidence 35567778888877763211 1245668999999999999999888863221 2444444488899988
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
|..+-. +.....-......+|++||...+..
T Consensus 319 esek~i-----------------------------------r~~F~~A~~~~p~iiFiDEiDs~~~ 349 (494)
T COG0464 319 ESEKNI-----------------------------------RELFEKARKLAPSIIFIDEIDSLAS 349 (494)
T ss_pred hHHHHH-----------------------------------HHHHHHHHcCCCcEEEEEchhhhhc
Confidence 877631 1222223356788999999998844
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.5 Score=56.55 Aligned_cols=141 Identities=21% Similarity=0.246 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-----HHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-----SNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-----~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
.+.-.||.-++|.|||.|.=.++....-.+ .+.+.+.=|.-+. .-=.+|+..-.+. .|. |.. +
T Consensus 64 ~~~vvii~getGsGKTTqlP~~lle~g~~~------~g~I~~tQPRRlAArsvA~RvAeel~~~~G~-~VG-Y~i----R 131 (845)
T COG1643 64 QNQVVIIVGETGSGKTTQLPQFLLEEGLGI------AGKIGCTQPRRLAARSVAERVAEELGEKLGE-TVG-YSI----R 131 (845)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHHhhhccc------CCeEEecCchHHHHHHHHHHHHHHhCCCcCc-eee-EEE----E
Confidence 357899999999999999877665443211 1223444443222 2233333322221 111 111 1
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHH-hhhccCceEEEEcCcccccCcccHHHH-HHHh----ccc-ceEEEEeCCCCCCC
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEGHRLKNGKSKLYE-LMTG----LNI-RKRILLSGTPLQND 543 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~-~l~~~~~~~vIlDEaH~~kn~~s~~~~-~l~~----l~~-~~rllLTgTP~~n~ 543 (680)
.++.. .....+-++|=..|.+.+. ...-..+++||+||+|.= +-++...- .+.. .+. -+.++||||-=...
T Consensus 132 fe~~~-s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-Sl~tDilLgllk~~~~~rr~DLKiIimSATld~~r 209 (845)
T COG1643 132 FESKV-SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-SLNTDILLGLLKDLLARRRDDLKLIIMSATLDAER 209 (845)
T ss_pred eeccC-CCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhh-hHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHH
Confidence 11110 1234577788888776543 222346999999999951 11222211 1222 232 34599999986666
Q ss_pred HHHHHHH
Q psy12466 544 LQEFFYL 550 (680)
Q Consensus 544 ~~el~sl 550 (680)
+..++.-
T Consensus 210 fs~~f~~ 216 (845)
T COG1643 210 FSAYFGN 216 (845)
T ss_pred HHHHcCC
Confidence 6666553
|
|
| >KOG0991|consensus | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.2 Score=50.20 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.+-.+-|++-.+|.|||..+.++++.+....- ++.+.+. .. +..
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~---------------------ke~vLEL---------NA-Sde----- 89 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDSY---------------------KEAVLEL---------NA-SDE----- 89 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChhh---------------------hhHhhhc---------cC-ccc-----
Confidence 45678999999999999999999988765321 1111111 11 111
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-ccceEEEEeCCCCCCCHHHHHHHHhh
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGTPLQNDLQEFFYLNDF 553 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~~~rllLTgTP~~n~~~el~sll~f 553 (680)
+.-|||=..-.+|....-.+...+...||+|||..+.....+..+..+.+ ....|++|----...-.+-+.|-+..
T Consensus 90 ---RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAi 166 (333)
T KOG0991|consen 90 ---RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAI 166 (333)
T ss_pred ---cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHh
Confidence 11122222233333333345556789999999998866555555544444 33444444332222222224444445
Q ss_pred hCCCCCCC
Q psy12466 554 ANPGVLGS 561 (680)
Q Consensus 554 l~p~~l~~ 561 (680)
|+-..+.+
T Consensus 167 LRysklsd 174 (333)
T KOG0991|consen 167 LRYSKLSD 174 (333)
T ss_pred hhhcccCH
Confidence 54444443
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=92.16 E-value=1.5 Score=52.81 Aligned_cols=163 Identities=21% Similarity=0.204 Sum_probs=87.6
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc--chH--HHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS--SLT--SNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~--sll--~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
..-.++.-|+|.|||.|+-.++........ ...++++-=|. +.+ .++...=. ..+....+-|...-..+.
T Consensus 188 ~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----~~~~IicTQPRRIsAIsvAeRVa~ER-~~~~g~~VGYqvrl~~~~- 261 (924)
T KOG0920|consen 188 NQVVVISGETGCGKTTQVPQFILDEAIESG----AACNIICTQPRRISAISVAERVAKER-GESLGEEVGYQVRLESKR- 261 (924)
T ss_pred CceEEEeCCCCCCchhhhhHHHHHHHHhcC----CCCeEEecCCchHHHHHHHHHHHHHh-ccccCCeeeEEEeeeccc-
Confidence 477899999999999999998876654332 12333444443 233 44432211 111112222222111111
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhhh-ccCceEEEEcCcccccCcccH-HHHHHHhc----ccceEEEEeCCCCCCCHHH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTIV-DTEFDLLICDEGHRLKNGKSK-LYELMTGL----NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l~-~~~~~~vIlDEaH~~kn~~s~-~~~~l~~l----~~~~rllLTgTP~~n~~~e 546 (680)
.....+..+|+..+.+...... -.....||+||+|.= +-++. +.-.++.+ ..-+.++||||---..+.+
T Consensus 262 ----s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER-~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~ 336 (924)
T KOG0920|consen 262 ----SRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHER-SINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSD 336 (924)
T ss_pred ----CCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEc-cCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHH
Confidence 1125688899998876553311 135789999999962 22333 22333333 3335699999997656666
Q ss_pred HHHHHhhh-CCCC-CCCHHHHHHHhh
Q psy12466 547 FFYLNDFA-NPGV-LGSLREFRKNFE 570 (680)
Q Consensus 547 l~sll~fl-~p~~-l~~~~~F~~~f~ 570 (680)
.|.....+ -|++ |+-...|.+.+.
T Consensus 337 YF~~~pvi~i~grtfpV~~~fLEDil 362 (924)
T KOG0920|consen 337 YFGGCPVITIPGRTFPVKEYFLEDIL 362 (924)
T ss_pred HhCCCceEeecCCCcchHHHHHHHHH
Confidence 65533333 2343 333445544443
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.4 Score=49.47 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=59.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
...+|.-..|+|||..+-+++..+....+. .+++.+....+...+...+..-
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~-----~~v~yi~~~~~~~~~~~~~~~~----------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPN-----AKVVYVTSEKFTNDFVNALRNN----------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCC-----CeEEEEEHHHHHHHHHHHHHcC-----------------------
Confidence 457899999999999999999888765431 2355554444444443333210
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCccc---HHHHHHHhc-ccceEEEEeCCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKS---KLYELMTGL-NIRKRILLSGTP 539 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s---~~~~~l~~l-~~~~rllLTgTP 539 (680)
+.+.+.. .+. ..+++||||.|.+.+... ..+..+..+ .....+++|++-
T Consensus 201 --------~~~~~~~---~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 201 --------TMEEFKE---KYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred --------cHHHHHH---HHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 1122222 222 488999999999865432 223333333 233457777764
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=92.08 E-value=3 Score=45.24 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|..|.+.+...+.... .....++.++.-+.|+|||..+-+++..+...
T Consensus 20 Re~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 20 RDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred cHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5566666654444321 12344678889999999999998888877543
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.8 Score=47.18 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
-|...+..+.+.+.. ..-.+..++.-+.|+|||..|-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~--~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSL--GRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHc--CCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 466666665554321 112233489999999999999999887753
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.27 Score=54.23 Aligned_cols=85 Identities=21% Similarity=0.277 Sum_probs=58.7
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhh---hcccCC----CCEEEEehhHHHHHHHhhhc---CC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAED---YVYSRV----SPVLIISYEMLIRAYQTIVD---TE 261 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~V~itsYe~l~~~~~~l~~---~~ 261 (680)
=|+|||+|+-. +.|-.++|.+|++..-+.+-...+..+..+ .+.... .+|+|++=+.+..+...... .+
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 48899999765 568999999999765555554444443332 222222 38999999999887764222 23
Q ss_pred CcEEEEcCCCCCCCCC
Q psy12466 262 FDLLICDEKSLLKPPS 277 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~~ 277 (680)
-.++|+|||.||-+-.
T Consensus 296 LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 296 LRFLVIDEADRLLDQS 311 (620)
T ss_pred ceEEEechHHHHHHHH
Confidence 5569999999997643
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.6 Score=45.50 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=32.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
+...|..++..+... ...+.+.+|.-.+|+|||..+.+++..+...+
T Consensus 88 ~~~~~~~~L~~~~~~-----~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 88 VSKAQVMAIAAGDSW-----LAKGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred CCHHHHHHHHHHHHH-----HhcCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 444566666443211 12457799999999999999999988777665
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.74 E-value=4.9 Score=47.21 Aligned_cols=46 Identities=22% Similarity=0.132 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..|.+.+.. ..-.+.-|+.-..|+|||..+.+++..+...
T Consensus 20 GQe~vv~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 20 GQEHVVKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CcHHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 355555555443211 1123445889999999999999998876544
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.39 Score=55.44 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=102.4
Q ss_pred cccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHH
Q psy12466 368 GFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSN 446 (680)
Q Consensus 368 ~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~q 446 (680)
........|||++-.+.|-. ..-....+.-..-+|||..++.++.+.....| .++|++.|+ .....
T Consensus 11 G~w~~~~~Py~~eimd~~~~-------~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P------~~~l~v~Pt~~~a~~ 77 (557)
T PF05876_consen 11 GPWRTDRTPYLREIMDALSD-------PSVREVVVMKSAQVGKTELLLNWIGYSIDQDP------GPMLYVQPTDDAAKD 77 (557)
T ss_pred CCCCCCCChhHHHHHHhcCC-------cCccEEEEEEcchhhHhHHHHhhceEEEEeCC------CCEEEEEEcHHHHHH
Confidence 33455678999988877632 33567888888999999988888877776665 469999998 56677
Q ss_pred HHHH-HHHHh---CCCCeeEeecCCcchhhh--hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc----cCc
Q psy12466 447 WNDE-FKKWL---GLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL----KNG 516 (680)
Q Consensus 447 W~~E-~~~~~---~~~~v~~~~~~~~~~~~~--~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~----kn~ 516 (680)
|.++ |.-.+ |.++-.+.....+..... ........+.+.....- ..|.....+++++||...+ ++.
T Consensus 78 ~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~----~~l~s~~~r~~~~DEvD~~p~~~~~e 153 (557)
T PF05876_consen 78 FSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP----SNLRSRPARYLLLDEVDRYPDDVGGE 153 (557)
T ss_pred HHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC----cccccCCcCEEEEechhhccccCccC
Confidence 7654 33332 322211111111111111 11112334555555432 3466778999999999987 334
Q ss_pred ccHHHHHHHhc---ccceEEEEeCCCCCCCHHHHHHH
Q psy12466 517 KSKLYELMTGL---NIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 517 ~s~~~~~l~~l---~~~~rllLTgTP~~n~~~el~sl 550 (680)
......+..+. ....++++..||-......+..+
T Consensus 154 Gdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 154 GDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred CCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 45555544443 46788999999987754444443
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=3.4 Score=48.22 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=30.9
Q ss_pred cHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 378 QRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
|...+..|.+.+. ...... -|+.-..|+|||..+..++..+...+
T Consensus 21 Qe~vv~~L~~~l~---~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~ 66 (618)
T PRK14951 21 QEHVVQALTNALT---QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQG 66 (618)
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 6666666555432 122233 47889999999999999998887543
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.8 Score=47.86 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=23.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+|.-..|+|||..+-+++..+....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~ 164 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENN 164 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 4568999999999999999988877653
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.43 E-value=1.4 Score=47.40 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=36.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
++|.|....+-+.++ ..-.+.-++.-..|+|||..|.+++..+.-..+
T Consensus 4 ~yPWl~~~~~~~~~~-----~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~ 51 (328)
T PRK05707 4 IYPWQQSLWQQLAGR-----GRHPHAYLLHGPAGIGKRALAERLAAALLCEAP 51 (328)
T ss_pred CCCCcHHHHHHHHHC-----CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 578888888877653 222345567889999999999999998876543
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=91.41 E-value=3.3 Score=39.61 Aligned_cols=138 Identities=13% Similarity=0.153 Sum_probs=67.4
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCC
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGL 457 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~ 457 (680)
|.+.+..+.+.+.. ..-...-|+.-+.|.||+..|.+++..+........ .|-.- .....+.. ..+
T Consensus 2 q~~~~~~L~~~~~~--~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~--------~c~~c---~~c~~~~~-~~~ 67 (162)
T PF13177_consen 2 QEEIIELLKNLIKS--GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED--------PCGEC---RSCRRIEE-GNH 67 (162)
T ss_dssp -HHHHHHHHHHHHC--TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT----------SSS---HHHHHHHT-T-C
T ss_pred cHHHHHHHHHHHHc--CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCC---HHHHHHHh-ccC
Confidence 55666666554321 122334577888999999999999998877654211 11110 01112221 111
Q ss_pred CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh----ccCceEEEEcCcccccCc-ccHHHHHHHhcccceE
Q psy12466 458 TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV----DTEFDLLICDEGHRLKNG-KSKLYELMTGLNIRKR 532 (680)
Q Consensus 458 ~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~----~~~~~~vIlDEaH~~kn~-~s~~~~~l~~l~~~~r 532 (680)
..+..+......+ ...-+.++.....+. ...+.++|+||||.+... .+.+.+.+..-...-+
T Consensus 68 ~d~~~~~~~~~~~-------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~ 134 (162)
T PF13177_consen 68 PDFIIIKPDKKKK-------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTY 134 (162)
T ss_dssp TTEEEEETTTSSS-------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEE
T ss_pred cceEEEecccccc-------------hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEE
Confidence 2233332222111 011233333333322 235889999999998432 2334444444466777
Q ss_pred EEEeCCCCCC
Q psy12466 533 ILLSGTPLQN 542 (680)
Q Consensus 533 llLTgTP~~n 542 (680)
++|+.+-..+
T Consensus 135 fiL~t~~~~~ 144 (162)
T PF13177_consen 135 FILITNNPSK 144 (162)
T ss_dssp EEEEES-GGG
T ss_pred EEEEECChHH
Confidence 7777765443
|
... |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.98 Score=44.04 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..+.|.+|.-.+|+|||..|.+++..+...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g 75 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG 75 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC
Confidence 3567889999999999999999998888765
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.2 Score=45.35 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=23.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+|.-..|+|||..+.+++......+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4588999999999999999888776654
|
|
| >KOG0780|consensus | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.89 Score=48.93 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=61.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
.+++-=.|.|||.++.-++.++.+++. ++.+||-..--.---++++.+.-..++.+|........-
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~-------K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv------- 169 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGY-------KVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPV------- 169 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCC-------ceeEEeecccccchHHHHHHHhHhhCCeeEecccccchH-------
Confidence 455667899999999999999888874 355666544333333444554444555555532222211
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccH
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK 519 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~ 519 (680)
.....-.+.+.+.+||+||+|=+-+.+-..+.
T Consensus 170 --------~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL 201 (483)
T KOG0780|consen 170 --------KIASEGVDRFKKENFDVIIVDTSGRHKQEASL 201 (483)
T ss_pred --------HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH
Confidence 12234466778889999999999887655443
|
|
| >KOG0734|consensus | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.7 Score=48.68 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=73.6
Q ss_pred HHHHHHHHh--hhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCC
Q psy12466 380 QGVSFLYER--VCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGL 457 (680)
Q Consensus 380 ~gv~~l~~~--~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~ 457 (680)
+-|.||.+= +..+...-..|.+|.-.+|+|||+.|=|++ |.
T Consensus 318 EiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvA------GE------------------------------- 360 (752)
T KOG0734|consen 318 EIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVA------GE------------------------------- 360 (752)
T ss_pred HHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhh------cc-------------------------------
Confidence 455555321 222333456789999999999999876655 11
Q ss_pred CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC---cccHH--HHHHHhc-----
Q psy12466 458 TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN---GKSKL--YELMTGL----- 527 (680)
Q Consensus 458 ~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn---~~s~~--~~~l~~l----- 527 (680)
..|..++.++..-.+.+.. ..-..++.....-....+.+|+|||...+.. +.... .+.+.+|
T Consensus 361 A~VPFF~~sGSEFdEm~VG--------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD 432 (752)
T KOG0734|consen 361 AGVPFFYASGSEFDEMFVG--------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD 432 (752)
T ss_pred cCCCeEeccccchhhhhhc--------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc
Confidence 1222333332221111110 1112233333444556799999999988733 33321 2233333
Q ss_pred ---ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCC
Q psy12466 528 ---NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLG 560 (680)
Q Consensus 528 ---~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~ 560 (680)
+..-.+++-||-+...+..- +++|+.|+
T Consensus 433 GF~qNeGiIvigATNfpe~LD~A-----L~RPGRFD 463 (752)
T KOG0734|consen 433 GFKQNEGIIVIGATNFPEALDKA-----LTRPGRFD 463 (752)
T ss_pred CcCcCCceEEEeccCChhhhhHH-----hcCCCccc
Confidence 55678999999877766553 67888765
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=2.1 Score=48.05 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
+.-.+|.-++|.|||..++.++......+ .++|.|.-.....|......++--+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g-------~~vlYvs~Ees~~qi~~ra~rlg~~~~----------------- 135 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAG-------GKVLYVSGEESASQIKLRAERLGLPSD----------------- 135 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEccccHHHHHHHHHHcCCChh-----------------
Confidence 44467899999999999999988776543 258888876666666555554321110
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
++.+..-..+......+...+.++||+|+.+.+..
T Consensus 136 ----~l~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 ----NLYLLAETNLEAILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred ----cEEEeCCCCHHHHHHHHHhhCCCEEEEechhhhcc
Confidence 01121111123333445566899999999997643
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=91.15 E-value=6.5 Score=48.03 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=43.8
Q ss_pred CCCEEEEeHHHHHHHHHhh---------hccCceEEEEcCcccccCcccHHHHHHHh---cccceEEEEeCCCCCCCHHH
Q psy12466 479 VSPVLIISYEMLIRAYQTI---------VDTEFDLLICDEGHRLKNGKSKLYELMTG---LNIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l---------~~~~~~~vIlDEaH~~kn~~s~~~~~l~~---l~~~~rllLTgTP~~n~~~e 546 (680)
..+|+|+|-+.+......+ ....-..|||||+|.+-.........+.. .-....++||||--..-...
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 3568888888776544222 22335689999999874433332222222 24567899999987665555
Q ss_pred HHH
Q psy12466 547 FFY 549 (680)
Q Consensus 547 l~s 549 (680)
|+.
T Consensus 642 L~~ 644 (1110)
T TIGR02562 642 LFR 644 (1110)
T ss_pred HHH
Confidence 543
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.21 Score=48.46 Aligned_cols=38 Identities=24% Similarity=0.521 Sum_probs=25.9
Q ss_pred CCCCEEEEeHHHHHHHHH--hh--hccCceEEEEcCcccccC
Q psy12466 478 RVSPVLIISYEMLIRAYQ--TI--VDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~--~l--~~~~~~~vIlDEaH~~kn 515 (680)
...+|+|++|..+..... .+ ....-.+||+||||++-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 357899999999865322 12 234567999999999843
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=4.1 Score=43.25 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=30.2
Q ss_pred CceEEEEcCcccccCcc--cHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 501 EFDLLICDEGHRLKNGK--SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 501 ~~~~vIlDEaH~~kn~~--s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
..++||+||+|.+.... ......+.......++++|++....-...+.+-+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 46799999999883322 1122223444566678888876554444454443
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=91.09 E-value=6.7 Score=37.57 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.++.-..|.|||..+..++..+...+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 35678899999999999998887764
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=2.4 Score=47.69 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=58.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
..+.+|.-++|+|||..+-+++..+....+ ..+++.+....++......+..- .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-----~~~v~yv~~~~f~~~~~~~l~~~--~------------------- 194 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFS-----DLKVSYMSGDEFARKAVDILQKT--H------------------- 194 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCC-----CCeEEEEEHHHHHHHHHHHHHHh--h-------------------
Confidence 356789999999999998888877665432 12355555544444444333210 0
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCccc---HHHHHHHhc-ccceEEEEeCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKS---KLYELMTGL-NIRKRILLSGT 538 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s---~~~~~l~~l-~~~~rllLTgT 538 (680)
..++.+. ..+ ...+++|+||+|.+.+... ..+..+..+ .....+++|+.
T Consensus 195 --------~~~~~~~---~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 --------KEIEQFK---NEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred --------hHHHHHH---HHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 0011111 222 2578999999999865332 233333333 23335788843
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.51 Score=59.83 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=51.0
Q ss_pred CeEEEEECcccHHHHH-HHHHH----H------h----CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--
Q psy12466 193 LRVLIVTPSSLTSNWN-DEFKK----W------L----GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-- 255 (680)
Q Consensus 193 ~~~LIV~P~sl~~nW~-~E~~k----~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-- 255 (680)
-++|+|+|.--+.+-. +++++ + + ...++.+.+|+.....+........+|+|||.|.+.....
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk 117 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR 117 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh
Confidence 3799999976654432 22321 1 1 2345666666654433332333567999999999865422
Q ss_pred ---hhhcCCCcEEEEcCCCCCCCC
Q psy12466 256 ---TIVDTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 256 ---~l~~~~~~~vI~DEaH~lKN~ 276 (680)
.+ .+.++||+||+|.|-+.
T Consensus 118 ~r~~L--~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 118 ARETL--RGVETVIIDEVHAVAGS 139 (1490)
T ss_pred hhhhh--ccCCEEEEecHHHhccc
Confidence 12 34678999999999864
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=91.01 E-value=1 Score=54.42 Aligned_cols=132 Identities=19% Similarity=0.234 Sum_probs=73.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHHHHHHHhCCCCeeEeec-CCcchhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWNDEFKKWLGLTRMCPYHV-NQKNKAE 472 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~E~~~~~~~~~v~~~~~-~~~~~~~ 472 (680)
.|.|.=..+|=|||++|..-+....-.|. .+-||+.+ .|. ..|...+-+|++. .+.+... .......
T Consensus 183 ~G~IAEM~TGEGKTLvAtlp~yLnAL~Gk-------gVHvVTVNDYLA~RDaewmgply~fLGL-svg~i~~~~~~~~~r 254 (1112)
T PRK12901 183 QGKIAEMATGEGKTLVATLPVYLNALTGN-------GVHVVTVNDYLAKRDSEWMGPLYEFHGL-SVDCIDKHQPNSEAR 254 (1112)
T ss_pred CCceeeecCCCCchhHHHHHHHHHHHcCC-------CcEEEEechhhhhccHHHHHHHHHHhCC-ceeecCCCCCCHHHH
Confidence 57777799999999987543332222221 25666665 555 8899999999885 3433322 1111111
Q ss_pred hhhhcCCCCEEEEeHHHH-----HHH----HHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCC
Q psy12466 473 DYVYSRVSPVLIISYEML-----IRA----YQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l-----~~~----~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~ 543 (680)
... -.+||.-+|-..| +.+ .+.+....+.+.|+||+..+- +. .++.-+++||. ..+.
T Consensus 255 r~a--Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL---------ID--EARTPLIISGp-~~~~ 320 (1112)
T PRK12901 255 RKA--YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL---------ID--DARTPLIISGP-VPKG 320 (1112)
T ss_pred HHh--CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh---------hc--cccCcEEEeCC-CCCc
Confidence 111 1345555443333 222 223445679999999998541 11 34445888885 3344
Q ss_pred HHHHHHHH
Q psy12466 544 LQEFFYLN 551 (680)
Q Consensus 544 ~~el~sll 551 (680)
..++|..+
T Consensus 321 ~~~~y~~~ 328 (1112)
T PRK12901 321 DDQEFEEL 328 (1112)
T ss_pred cHHHHHHH
Confidence 44454433
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.79 Score=38.04 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=35.6
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEF 451 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~ 451 (680)
.+-.++--.+|+|||.+++..+..+...... + .+++||++|+... .+-.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~--~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARAD--P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcC--C-CCeEEEECCCHHHHHHHHHHH
Confidence 3446668999999999999988888754211 1 2469999998444 4433333
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=90.94 E-value=3.6 Score=38.19 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=25.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
++.-..|.|||..+..++......+ .+++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~-------~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKG-------GKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcC-------CEEEEEECC
Confidence 5667899999999999988776643 246666554
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.9 Score=42.43 Aligned_cols=28 Identities=14% Similarity=-0.105 Sum_probs=23.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+|.-..|+|||..+.+++..+...+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3458999999999999999988876654
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.85 E-value=3.6 Score=47.94 Aligned_cols=47 Identities=23% Similarity=0.155 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.|...++.+.+.+.. ..-.+.-||.-..|+|||..|..++..+....
T Consensus 28 Gq~~~v~~L~~~~~~--gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 28 GQEAMVRTLTNAFET--GRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred CcHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 466666666554321 12244578889999999999999998887554
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.44 Score=58.05 Aligned_cols=76 Identities=11% Similarity=0.120 Sum_probs=50.2
Q ss_pred eEEEEeccc-hHHHHHHHHHHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEc
Q psy12466 434 KVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICD 508 (680)
Q Consensus 434 ~~LIV~P~s-ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlD 508 (680)
.++|+||.. -+....+.+.+.+|..++..+||.-..... .....+..+|+|+|- .+..-+ .-.+.++||++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-iie~GI---DIp~v~~VIi~ 737 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-IIETGI---DIPNANTIIIE 737 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hhhccc---ccccCCEEEEe
Confidence 489999974 345556667777788899999987554332 223456788999983 333322 22346789998
Q ss_pred Ccccc
Q psy12466 509 EGHRL 513 (680)
Q Consensus 509 EaH~~ 513 (680)
.++++
T Consensus 738 ~a~~~ 742 (926)
T TIGR00580 738 RADKF 742 (926)
T ss_pred cCCCC
Confidence 88764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.2 Score=48.53 Aligned_cols=46 Identities=20% Similarity=0.093 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..+.+.+. ...-.+..+|.-+.|+|||..|-.++..+...
T Consensus 25 Gq~~vv~~L~~ai~--~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 25 GQEVLVKVLSYTIL--NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CcHHHHHHHHHHHH--cCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 46666665544321 12234578899999999999999999887654
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.83 Score=49.52 Aligned_cols=26 Identities=31% Similarity=0.179 Sum_probs=20.5
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
..-...||.-.+|+|||..|-.++..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHh
Confidence 45577999999999999877666543
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=8.7 Score=42.47 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..+...+.. ..-...-|+.-+.|+|||..|.+++..+.-.
T Consensus 20 Gq~~~~~~L~~~~~~--~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 20 AQEHITRTIQNSLRM--GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ChHHHHHHHHHHHHh--CCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 355555554443211 1123346688999999999999999888654
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=90.55 E-value=4.2 Score=45.46 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..-.+++-..|.|||.++..++..+...+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g 123 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKG 123 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 34567788999999999999998887654
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=2.2 Score=43.94 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=25.2
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..+.+|.-++|+|||..+.|++..+...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 46778999999999999999999888765
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.85 Score=53.62 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
..|-.++.-+.+.+. .+.+.-+|.--.|.|||+++..++.... +|+|||+|+ .+..||.+||+.|
T Consensus 12 ~~Q~~ai~~l~~~~~----~~~~~~~l~Gvtgs~kt~~~a~~~~~~~----------~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 12 GDQPKAIAKLVEGLT----DGEKHQTLLGVTGSGKTFTMANVIAQVN----------RPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred hHHHHHHHHHHHhhh----cCCCcEEEECCCCcHHHHHHHHHHHHhC----------CCEEEEECCHHHHHHHHHHHHHh
Confidence 378888888877532 2223446788899999999887775421 359999998 5668999999999
Q ss_pred hCCCCeeEe
Q psy12466 455 LGLTRMCPY 463 (680)
Q Consensus 455 ~~~~~v~~~ 463 (680)
+|...|..+
T Consensus 78 ~p~~~V~~f 86 (655)
T TIGR00631 78 FPENAVEYF 86 (655)
T ss_pred CCCCeEEEE
Confidence 998656554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=2.5 Score=47.82 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=21.8
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
..|+.-++|+|||..|-+++..+...
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc
Confidence 45899999999999999988876543
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.8 Score=52.68 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=31.8
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|..-++.+++.++ .....+.+|.-++|.|||..+-+++..+..
T Consensus 178 r~~ei~~~~~~l~---r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 178 RDEEIRRTIQVLS---RRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred cHHHHHHHHHHHh---cCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5556777776543 234577899999999999999888876644
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.69 Score=52.20 Aligned_cols=104 Identities=15% Similarity=0.246 Sum_probs=56.8
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhC----CCCeeEeecCCcchhh---hhh
Q psy12466 404 DEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLG----LTRMCPYHVNQKNKAE---DYV 475 (680)
Q Consensus 404 DemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~----~~~v~~~~~~~~~~~~---~~~ 475 (680)
+.+|.|||+++.++|..+..+|- +.+|..|-. +++..-...|..-.. ....+.+.+. ..... .+.
T Consensus 4 matgsgkt~~ma~lil~~y~kgy------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~-~i~ikkvn~fs 76 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKGY------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDE-NIEIKKVNNFS 76 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhch------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCc-eeeeeeecccC
Confidence 57899999999999999988874 347777764 666544433321100 0001111111 11111 110
Q ss_pred -hcCCCCEEEEeHHHHHHHHHhhhc---------cCceEEEEcCccccc
Q psy12466 476 -YSRVSPVLIISYEMLIRAYQTIVD---------TEFDLLICDEGHRLK 514 (680)
Q Consensus 476 -~~~~~~vvI~ty~~l~~~~~~l~~---------~~~~~vIlDEaH~~k 514 (680)
....-.|++||-+.+..+...-.. ..--+++-||||++.
T Consensus 77 ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 77 EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 112345889998888765433221 112356679999993
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=2.4 Score=50.79 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCce-EEEcCCCCChHHHHHHHHHHHHh
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGA-ILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~-iLaDemGlGKT~~aiali~~~~~ 423 (680)
|.-|.+.+...+.... ......++ ++.-.+|+|||.++-.++..+..
T Consensus 760 REeEIeeLasfL~paI--kgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 760 REKEIKEVHGFLESGI--KQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred hHHHHHHHHHHHHHHH--hcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556666654444321 12233345 48999999999999998877754
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=9.4 Score=44.40 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.|...+..+.+.+. ...-.. -|+.-+.|+|||..+.+++..+...
T Consensus 20 Gq~~v~~~L~~~i~---~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 20 GQEHVSRTLQNAID---TGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 35555555554322 122233 4788899999999999999887643
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=90.04 E-value=2.4 Score=51.46 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=31.9
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|..-++.+++.++ .....+.||.-++|.|||..+=.++..+..
T Consensus 192 r~~ei~~~i~~l~---r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILL---RRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHh---cCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 5556777776432 234568899999999999998888777654
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=3.5 Score=47.84 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.|...+..|...+. ...-.. -|+.-..|+|||..|.+++..+.-
T Consensus 17 Gq~~i~~~L~~~i~---~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 17 GQEHVTEPLSSALD---AGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46666666655432 122233 478899999999999999987764
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=89.94 E-value=1.1 Score=40.28 Aligned_cols=21 Identities=38% Similarity=0.335 Sum_probs=17.4
Q ss_pred EEEcCCCCChHHHHHHHHHHH
Q psy12466 401 ILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~ 421 (680)
+|--.+|+|||..+-.++..+
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 566789999999988888765
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.6 Score=53.43 Aligned_cols=129 Identities=17% Similarity=0.152 Sum_probs=74.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.|-+-|++++..+.. ...-++|.-..|+|||.+.-++.......+. .++.++|+.....=..+
T Consensus 346 ~Ls~eQr~Av~~il~--------s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~-------~V~~~ApTGkAA~~L~e-- 408 (988)
T PRK13889 346 VLSGEQADALAHVTD--------GRDLGVVVGYAGTGKSAMLGVAREAWEAAGY-------EVRGAALSGIAAENLEG-- 408 (988)
T ss_pred CCCHHHHHHHHHHhc--------CCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-------eEEEecCcHHHHHHHhh--
Confidence 478899999987753 1235788899999999875555444444442 48888997654322211
Q ss_pred HHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH--HhhhccCceEEEEcCcccccCcccHHHHHHHhc-cc
Q psy12466 453 KWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY--QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NI 529 (680)
Q Consensus 453 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~--~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~ 529 (680)
-.+ ...... ..+.... ....-...++||||||-.+. .....+.+... ..
T Consensus 409 -~tG---------i~a~TI----------------~sll~~~~~~~~~l~~~~vlIVDEASMv~--~~~m~~LL~~a~~~ 460 (988)
T PRK13889 409 -GSG---------IASRTI----------------ASLEHGWGQGRDLLTSRDVLVIDEAGMVG--TRQLERVLSHAADA 460 (988)
T ss_pred -ccC---------cchhhH----------------HHHHhhhcccccccccCcEEEEECcccCC--HHHHHHHHHhhhhC
Confidence 000 000000 0000000 00012346899999999883 23344444433 56
Q ss_pred ceEEEEeCCCCCCCHHH
Q psy12466 530 RKRILLSGTPLQNDLQE 546 (680)
Q Consensus 530 ~~rllLTgTP~~n~~~e 546 (680)
..+++|.|=|-|....+
T Consensus 461 garvVLVGD~~QLpsV~ 477 (988)
T PRK13889 461 GAKVVLVGDPQQLQAIE 477 (988)
T ss_pred CCEEEEECCHHHcCCCC
Confidence 78999999987765443
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.4 Score=47.53 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=23.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+|.-+.|+|||..+-+++..+...+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~ 169 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG 169 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4678899999999999999998877653
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.81 Score=53.43 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=44.3
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCC---CcEEEEcC
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTE---FDLLICDE 269 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~---~~~vI~DE 269 (680)
+++..+|..- +.|=..+|...+-...+....++..........-...+|++.+=..+.++........ |.++|+||
T Consensus 108 KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE 187 (746)
T KOG0354|consen 108 KVVFLAPTRPLVNQQIACFSIYLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDE 187 (746)
T ss_pred eEEEeeCCchHHHHHHHHHhhccCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcc
Confidence 4455555432 2333345555542233444444422222111122346789999888888766443333 99999999
Q ss_pred CCCCC
Q psy12466 270 KSLLK 274 (680)
Q Consensus 270 aH~lK 274 (680)
|||-.
T Consensus 188 ~Hra~ 192 (746)
T KOG0354|consen 188 CHRTS 192 (746)
T ss_pred ccccc
Confidence 99753
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=89.71 E-value=2 Score=45.84 Aligned_cols=44 Identities=30% Similarity=0.219 Sum_probs=29.6
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..+.+... .......++.-+.|+|||..+.+++..+...
T Consensus 20 ~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 20 QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4455555544321 1222368899999999999999998877643
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.69 E-value=10 Score=43.44 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCce-EEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGA-ILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~-iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.|...+..|.+.+. ...-... ++.-+.|.|||..+-+++..+...
T Consensus 18 Gqe~v~~~L~~~I~---~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 18 GQESVSKTLSLALD---NNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred CcHHHHHHHHHHHH---cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 35555555554332 1222333 788999999999999999887643
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.64 E-value=11 Score=43.73 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=28.4
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..+.+.+.. ...++.-|+.-+.|+|||..|-.++..+...
T Consensus 21 q~~v~~~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 21 QEHITKTLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred cHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44555544443221 1123345668999999999999988776544
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=11 Score=43.98 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...-|+.-+.|+|||..|..++..+..
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccc
Confidence 345667899999999999999988764
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=89.50 E-value=2.3 Score=51.63 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=30.1
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
..+-+..+.+.++ .....+.||.-++|.|||..+-+++..+..
T Consensus 184 r~~ei~~~~~~L~---r~~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 184 REKEIERVIQILG---RRTKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred cHHHHHHHHHHHc---ccccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3344455554432 234568899999999999999888877654
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.3 Score=47.33 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 395 LDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
.+.++-|--...|+|||..- ++.+...-..- -.| -.+.+||. -+..|-.+-+.+......+....+-...+..
T Consensus 127 ~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~~P---Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~ 201 (477)
T KOG0332|consen 127 EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--VVP---QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK 201 (477)
T ss_pred CCchhhhhhhcCCCchhHHHHHHHHHhcCccc--cCC---CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc
Confidence 34555555578899999652 22222221111 111 25777997 4555554444443222222222211111111
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhhhc---cCceEEEEcCcccccCcc---cHHHHHHHhcc-cceEEEEeCCCC
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTIVD---TEFDLLICDEGHRLKNGK---SKLYELMTGLN-IRKRILLSGTPL 540 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l~~---~~~~~vIlDEaH~~kn~~---s~~~~~l~~l~-~~~rllLTgTP~ 540 (680)
+. ..-..+|+|-|..++......+.- ....++++|||..+-+.. -+..+.++.+. ....++.|||-.
T Consensus 202 rG-~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~ 275 (477)
T KOG0332|consen 202 RG-NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV 275 (477)
T ss_pred cC-CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH
Confidence 11 111356999999998877665443 356799999999875433 23334444454 556688899863
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=89.44 E-value=2.4 Score=51.65 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.6
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|..-++.+++.++ .....+.+|.-++|.|||..+-+++..+..
T Consensus 183 r~~ei~~~i~iL~---r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 183 RDEEIRRTIQVLQ---RRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CHHHHHHHHHHHh---cCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4445777776433 235568999999999999999888877653
|
|
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.41 E-value=2.9 Score=45.65 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=71.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
.-.+++-|+|.||+..-+-+++.+...+ ++|.|+-.--..||+-...+.--
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--------~vLYVsGEES~~QiklRA~RL~~--------------------- 144 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--------KVLYVSGEESLQQIKLRADRLGL--------------------- 144 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC--------cEEEEeCCcCHHHHHHHHHHhCC---------------------
Confidence 3367789999999998888888887765 39999999999999888887521
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
...++++.....+......+.+.+++++|+|=.|.+-+
T Consensus 145 ~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 145 PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 12456777777777777888889999999999998744
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=3.6 Score=46.16 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.1
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
...+|.-+.|+|||..+-+++..+....+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~ 159 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP 159 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC
Confidence 45789999999999999999988776543
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=3 Score=43.49 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=25.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.+.+.+|.-++|+|||..+.|++..+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 45678899999999999999999888765
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=89.22 E-value=2.5 Score=51.69 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=72.3
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-----HHHHHHHHHHhCCCCeeEeecCCc
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-----SNWNDEFKKWLGLTRMCPYHVNQK 468 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-----~qW~~E~~~~~~~~~v~~~~~~~~ 468 (680)
+..+...+++...|+|||+.|=-.+.. + ....++..|+|...+ .-|...|..- .+..+.-..|...
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~l~-----~---~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s 1226 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELALLR-----P---DTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETS 1226 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHhcC-----C---ccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccc
Confidence 345678999999999999877322221 2 235678999998655 6687777765 3333443333322
Q ss_pred chhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc
Q psy12466 469 NKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 469 ~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~ 516 (680)
.+.......+|+|.|.+.+.... .-...++.|+||.|.+.+.
T Consensus 1227 ---~~lkl~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~ 1268 (1674)
T KOG0951|consen 1227 ---LDLKLLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGV 1268 (1674)
T ss_pred ---cchHHhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhccc
Confidence 22233346789999999886542 2345889999999999754
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=89.15 E-value=9.6 Score=39.79 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=74.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-c---chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-S---SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~---sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+.-..|.|||.....++..+...+. ++.+|.- . ..+.||...... ..+.++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~-------~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~--------- 135 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-------TVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA--------- 135 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCC-------eEEEEecCCCCHHHHHHHHHHhhh----cCceEEe---------
Confidence 45677788999999988777776654332 3555544 2 355677644332 1111111
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhc-cCceEEEEcCcccccCcccHHHHHHHhc----c-cceEEEEeCCCCCCCHHHH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVD-TEFDLLICDEGHRLKNGKSKLYELMTGL----N-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~-~~~~~vIlDEaH~~kn~~s~~~~~l~~l----~-~~~rllLTgTP~~n~~~el 547 (680)
..+.+.+...+..+.. .++|+||+|-+=+...... ....+..+ . ....++|+||--.+...+.
T Consensus 136 ----------~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~-~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 136 ----------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASE-TVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred ----------cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHH-HHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 0122334444444433 3689999999866533222 22222222 2 2345789999988888888
Q ss_pred HHHHhhhCCC
Q psy12466 548 FYLNDFANPG 557 (680)
Q Consensus 548 ~sll~fl~p~ 557 (680)
...++-+.++
T Consensus 205 ~~~f~~~~~~ 214 (270)
T PRK06731 205 ITNFKDIHID 214 (270)
T ss_pred HHHhCCCCCC
Confidence 7776665444
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.81 Score=51.54 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=65.1
Q ss_pred HHhhcCCCCCeEEEEECcc-cHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hh
Q psy12466 184 QEKNRRSYILRVLIVTPSS-LTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IV 258 (680)
Q Consensus 184 Q~~~~~~~~~~~LIV~P~s-l~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~ 258 (680)
|....++...++||+||+- |..|-++++.++....+ ...++|+....-+........+|+|.+=+.+..+.+. +.
T Consensus 157 ~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 157 QGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLN 236 (519)
T ss_pred cccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCcc
Confidence 4445556677899999976 45688999999985555 5555555544344333446678999999988665552 33
Q ss_pred cCCCcEEEEcCCCCCCCC
Q psy12466 259 DTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~ 276 (680)
-.+..++|+|||.|+-..
T Consensus 237 l~~v~ylVLDEADrMldm 254 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDM 254 (519)
T ss_pred ccceeEEEeccHHhhhcc
Confidence 346889999999999764
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=89.14 E-value=3.6 Score=37.49 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=26.8
Q ss_pred CceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCC
Q psy12466 501 EFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 501 ~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~ 543 (680)
+..+|++||+|++.+.... .+.+..-..+.++++||.-...-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~-lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDA-LKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred CCcEEEEehhhhhccHHHH-HHHHHHhccCceEEEEccchHHH
Confidence 5679999999999653222 22222223456899999865443
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.34 Score=46.92 Aligned_cols=39 Identities=21% Similarity=0.426 Sum_probs=26.1
Q ss_pred CCCCEEEEehhHHHHHH--Hhh--hcCCCcEEEEcCCCCCCCC
Q psy12466 238 RVSPVLIISYEMLIRAY--QTI--VDTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 238 ~~~~V~itsYe~l~~~~--~~l--~~~~~~~vI~DEaH~lKN~ 276 (680)
...+|+|++|..+-... ..+ ....-.+||+||||.|=+.
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 44789999999886532 122 2345578999999998543
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.88 Score=52.55 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=78.1
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH----HHHhCCCCeeEeecCCcchhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF----KKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~----~~~~~~~~v~~~~~~~~~~~~ 472 (680)
+-.+..-.=--|||..+..++..+....+ .-.+++++|. .+...--+|+ ++|++...+....+ ...
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~-----Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG---e~I- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFR-----GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG---ETI- 325 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCC-----CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC---cEE-
Confidence 33455555567999988777765554322 1258999995 4555555554 45655433322222 111
Q ss_pred hhhhc-CC-CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc--ccceEEEEeCCC---------
Q psy12466 473 DYVYS-RV-SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL--NIRKRILLSGTP--------- 539 (680)
Q Consensus 473 ~~~~~-~~-~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--~~~~rllLTgTP--------- 539 (680)
.+... +. ..+.+.|- ..-..++...++++|+||||.++.. .....+--+ .....|.+|.|-
T Consensus 326 ~i~f~nG~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL 399 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQTNCKIIFVSSTNTGKASTSFL 399 (738)
T ss_pred EEEecCCCccEEEEEec----cCCCCccCCcccEEEEechhhCCHH--HHHHHHHHHhccCccEEEEecCCCCccchHHH
Confidence 11111 11 12333211 1123466678999999999999652 222222112 455567787662
Q ss_pred --CCCCHHHHHHHHhhhCCCC
Q psy12466 540 --LQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 540 --~~n~~~el~sll~fl~p~~ 558 (680)
+.|...+|.+...|++++-
T Consensus 400 ~nLk~a~~~lLNVVsYvCdeH 420 (738)
T PHA03368 400 YNLKGAADELLNVVTYICDEH 420 (738)
T ss_pred HhhcCchhhheeeEEEEChhh
Confidence 4455566666666665543
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.90 E-value=11 Score=39.68 Aligned_cols=44 Identities=27% Similarity=0.236 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.|.+.+..+...+. .......+|.-+.|+|||..+-+++..+..
T Consensus 21 g~~~~~~~l~~~i~---~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 21 GQEEIVERLKSYVK---EKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred CcHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 35555655554321 122345799999999999999888877644
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=88.89 E-value=3.1 Score=41.89 Aligned_cols=30 Identities=23% Similarity=0.070 Sum_probs=24.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.....+|.-+.|+|||..+.++.......+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~ 70 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG 70 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 456789999999999999988887765543
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.76 E-value=2.1 Score=43.80 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH------HHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT------SNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll------~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
.+-+.+.-++|+|||+.+=+++..+.... .+.|+.|+.++ .-|..++.. -|.. .
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~--------~~~v~i~~~~~s~~~~~~ai~~~l~~-~p~~-----------~ 110 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQ--------VAVVVIDKPTLSDATLLEAIVADLES-QPKV-----------N 110 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCc--------eEEEEecCcchhHHHHHHHHHHHhcc-Cccc-----------h
Confidence 33566778999999998875555544322 24567776543 456665553 1110 0
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHHhhhcc-CceEEEEcCcccccCcccHHHHHHHhc----ccceEEEEeCCC
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQTIVDT-EFDLLICDEGHRLKNGKSKLYELMTGL----NIRKRILLSGTP 539 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~-~~~~vIlDEaH~~kn~~s~~~~~l~~l----~~~~rllLTgTP 539 (680)
+-......-+......... +.-++++||||.+....-...+.+..+ ....+++|-|-|
T Consensus 111 -----------~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 111 -----------VNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred -----------hHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc
Confidence 0000011111112222233 347999999999865444444444433 333457777777
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.4 Score=44.24 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=73.7
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCC---ccceEEEEeccchHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMP---VIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~---~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
-|.+++..+.+.+.. ..-.+.-++.-..|+||+..|.+|+..+.-..+.+.. .....|-+|+..-...|.. ..
T Consensus 23 Gq~~~~~~L~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~--~~ 98 (365)
T PRK07471 23 GHAAAEAALLDAYRS--GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA--AG 98 (365)
T ss_pred ChHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH--cc
Confidence 366666666554321 1223456788999999999999999999865532111 0123566666533333322 11
Q ss_pred HhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh----ccCceEEEEcCcccccCc-ccHHHHHHHhcc
Q psy12466 454 WLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV----DTEFDLLICDEGHRLKNG-KSKLYELMTGLN 528 (680)
Q Consensus 454 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~----~~~~~~vIlDEaH~~kn~-~s~~~~~l~~l~ 528 (680)
-.|+..++.-....+.. .. ... ++-+.++.....+. ...+.+|||||+|.+... .+...+.+....
T Consensus 99 ~HPDl~~i~~~~~~~~~--~~----~~~---I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 99 AHGGLLTLERSWNEKGK--RL----RTV---ITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred CCCCeEEEecccccccc--cc----ccc---ccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 12443222111001000 00 011 13444554444332 246889999999988321 122333333333
Q ss_pred cce-EEEEeCCC
Q psy12466 529 IRK-RILLSGTP 539 (680)
Q Consensus 529 ~~~-rllLTgTP 539 (680)
... .+++|-.|
T Consensus 170 ~~~~~IL~t~~~ 181 (365)
T PRK07471 170 ARSLFLLVSHAP 181 (365)
T ss_pred CCeEEEEEECCc
Confidence 333 34455544
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.55 E-value=3.4 Score=40.73 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH-HHHHHHH--hCCCCeeEeecCCcchhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW-NDEFKKW--LGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW-~~E~~~~--~~~~~v~~~~~~~~~~~~ 472 (680)
..+..++....|-|||..|++++......+. +++|| -.+...| ..|..-+ ++. +.+..........
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-------~V~iv--QFlKg~~~~GE~~~l~~l~~--v~~~~~g~~~~~~ 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-------KVGVV--QFIKGAWSTGERNLLEFGGG--VEFHVMGTGFTWE 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC-------eEEEE--EEecCCCccCHHHHHhcCCC--cEEEECCCCCccc
Confidence 3456778899999999999999988887763 35554 2233333 1222221 232 2222111100000
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc----ccHHHHHHHhcccceEEEEeCCCCCCCHHHHH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG----KSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~----~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~ 548 (680)
. .....-.-.--+.+......+....+|+||+||.-..-+. .......+..-...--++|||--....+.|+.
T Consensus 90 ~---~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~A 166 (191)
T PRK05986 90 T---QDRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAA 166 (191)
T ss_pred C---CCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 0 0000000000011222234456778999999998654332 23334444443444569999986666555555
Q ss_pred HHHhhh
Q psy12466 549 YLNDFA 554 (680)
Q Consensus 549 sll~fl 554 (680)
.++.-+
T Consensus 167 DlVTEm 172 (191)
T PRK05986 167 DLVTEM 172 (191)
T ss_pred chheec
Confidence 444433
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.1 Score=53.61 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=61.0
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhC---CCCeeE-EeecCCcch----hhhcccCCCCEEEEehhHHHHHHHhhhcCCCc
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLG---LTRMCP-YHVNQKNKA----EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~---~~~~~~-~~~~~~~~~----~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~ 263 (680)
++++||+|+++ +.|=.+-+.++.. ..++.+ ||+.-..+. ........++|+|||=..+.+..+.|.+.+||
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFd 205 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFD 205 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCC
Confidence 78999999776 5788899999972 123332 555532222 12345567999999999999999999999999
Q ss_pred EEEEcCCCCC
Q psy12466 264 LLICDEKSLL 273 (680)
Q Consensus 264 ~vI~DEaH~l 273 (680)
+|++|-+.-+
T Consensus 206 fifVDDVDA~ 215 (1187)
T COG1110 206 FIFVDDVDAI 215 (1187)
T ss_pred EEEEccHHHH
Confidence 9999998743
|
|
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.7 Score=46.97 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.-+|.++.-.+|+|||+.|=|++.... .+.+=+. +.+...|.-|-++..
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~-----------tTFFNVSsstltSKwRGeSEKlv------------------- 293 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECG-----------TTFFNVSSSTLTSKWRGESEKLV------------------- 293 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhc-----------CeEEEechhhhhhhhccchHHHH-------------------
Confidence 446889999999999999888775432 2455444 567799987766531
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc--------ccHHHH--HHHhc--------ccceEEEEe
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG--------KSKLYE--LMTGL--------NIRKRILLS 536 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~--------~s~~~~--~l~~l--------~~~~rllLT 536 (680)
+-..+.-..+.+..|+|||...+-+. .|+..+ .+.++ ..+..++|-
T Consensus 294 ----------------RlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 294 ----------------RLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred ----------------HHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 11112222345778999998877331 222222 12222 234578899
Q ss_pred CCCCCCCHHHH
Q psy12466 537 GTPLQNDLQEF 547 (680)
Q Consensus 537 gTP~~n~~~el 547 (680)
||-+.=.+.|-
T Consensus 358 ATN~PWdiDEA 368 (491)
T KOG0738|consen 358 ATNFPWDIDEA 368 (491)
T ss_pred ccCCCcchHHH
Confidence 99887777664
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=4.1 Score=46.78 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=29.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..+...+.. .......|+.-+.|+|||..|..++..+...
T Consensus 21 q~~~v~~L~~~i~~--~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 21 QQHALNSLVHALET--QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred cHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 55555555443211 1122345788999999999999999877643
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=3.3 Score=49.51 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=23.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999998888766544
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=87.88 E-value=7.8 Score=39.06 Aligned_cols=28 Identities=29% Similarity=0.204 Sum_probs=22.8
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+|.-+.|+|||.-.-|++..+....
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~ 62 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQH 62 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 4578999999999998888887776654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=6 Score=45.18 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHhhhhhccCCCCce-EEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGA-ILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~-iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
-|...+..+.+.+. ...-... ++.-+.|+|||..+.+++..+...+
T Consensus 18 Gq~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 18 GQEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred ChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 35555555544321 1222334 8889999999999999998876544
|
|
| >PHA03372 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=0.72 Score=52.59 Aligned_cols=139 Identities=20% Similarity=0.178 Sum_probs=75.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH----HHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCC
Q psy12466 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT----SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480 (680)
Q Consensus 406 mGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll----~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 480 (680)
=-=|||...+++|+.+...-.. =.+..++.- ++. ..-...+.+|+|...+.-. ....-..... ....
T Consensus 211 RRHGKTWf~VpiIsllL~s~~g-----I~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~--k~~tI~~s~p-g~Ks 282 (668)
T PHA03372 211 RRHGKTWFIIPIISFLLKNIIG-----ISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN--KDNVISIDHR-GAKS 282 (668)
T ss_pred ccCCceehHHHHHHHHHHhhcC-----ceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee--cCcEEEEecC-CCcc
Confidence 3459999999988877763321 136777773 333 4445557889987654211 1100000000 0111
Q ss_pred CEEEEe-HHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCC-----------CCCCHHHHH
Q psy12466 481 PVLIIS-YEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTP-----------LQNDLQEFF 548 (680)
Q Consensus 481 ~vvI~t-y~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP-----------~~n~~~el~ 548 (680)
.++.++ |+ .+.++...|+++++||||-++-..-...--+...+....+.+|.|- +.|...++.
T Consensus 283 t~~fasc~n-----~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~Nsg~~sTSfL~~Lk~~~~~~l 357 (668)
T PHA03372 283 TALFASCYN-----TNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISSTNTTNDATCFLTKLNNSPFDML 357 (668)
T ss_pred eeeehhhcc-----CccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCCCCCCccchHHHhccCchhhhe
Confidence 122222 32 2457778899999999999865432222222333555567777552 345555566
Q ss_pred HHHhhhCCC
Q psy12466 549 YLNDFANPG 557 (680)
Q Consensus 549 sll~fl~p~ 557 (680)
+...|++++
T Consensus 358 nVVsYvC~~ 366 (668)
T PHA03372 358 NVVSYVCEE 366 (668)
T ss_pred eeEEEEchh
Confidence 655565544
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=87.82 E-value=2 Score=51.50 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=46.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
...|.+|.-.+|+|||..+-+++..... +++.|-+..++..|..+-.+
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~----------~fi~v~~~~l~~~~vGese~---------------------- 533 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGA----------NFIAVRGPEILSKWVGESEK---------------------- 533 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC----------CEEEEehHHHhhcccCcHHH----------------------
Confidence 4567888999999999998888765321 25556555555555332221
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
.++..........+.++++||++.+
T Consensus 534 -------------~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 534 -------------AIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred -------------HHHHHHHHHHhcCCEEEEEEChhhh
Confidence 1222223334456789999999987
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=87.79 E-value=4.4 Score=45.58 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=56.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+.-.+|+-++|.|||..++.++..+...+ .++|.|.......|......++.-...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-------~kvlYvs~EEs~~qi~~ra~rlg~~~~---------------- 149 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ-------MKVLYVSGEESLQQIKMRAIRLGLPEP---------------- 149 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CcEEEEECcCCHHHHHHHHHHcCCChH----------------
Confidence 344468889999999999999988776553 248888887666676655554311000
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.+.+.....+......+...++++||+|..+.+.
T Consensus 150 -----~l~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 150 -----NLYVLSETNWEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred -----HeEEcCCCCHHHHHHHHHhcCCcEEEEecchhhc
Confidence 1111111112233344556689999999998764
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=11 Score=43.37 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.|...++.+.+.+.. ..-.+.-|+.-..|+|||..|-.++..+..
T Consensus 20 Gq~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 20 GQEHVVRALTNALEQ--QRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CcHHHHHHHHHHHHc--CCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455555555443211 112233478999999999999999887754
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=87.53 E-value=5.7 Score=46.10 Aligned_cols=101 Identities=24% Similarity=0.291 Sum_probs=58.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
...+|.-..|+|||..+.+++..+....+. .+++.+....++..+...+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g-----~~V~Yitaeef~~el~~al~~------------------------ 365 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPG-----TRVRYVSSEEFTNEFINSIRD------------------------ 365 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCC-----CeEEEeeHHHHHHHHHHHHHh------------------------
Confidence 347889999999999999988887653221 235555544444444333321
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccH---HHHHHHhccc-ceEEEEeCCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK---LYELMTGLNI-RKRILLSGTP 539 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~---~~~~l~~l~~-~~rllLTgTP 539 (680)
-.++.|.+. +. ..|+||||+.|.+.+.... ++..+..+.. ...+++|+.-
T Consensus 366 -------~~~~~f~~~---y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 366 -------GKGDSFRRR---YR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred -------ccHHHHHHH---hh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 012222222 22 3799999999999764432 3334444422 3446676654
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=87.43 E-value=4.1 Score=48.82 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=31.1
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|..-+..+++.++ .....+.||.-++|.|||..+-+++..+...
T Consensus 187 r~~ei~~~~~~L~---~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 187 REDELERTIQVLC---RRKKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred cHHHHHHHHHHHh---cCCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4444555555432 2345689999999999999998888777553
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.16 E-value=4 Score=45.01 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=22.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.+.-++.-..|.|||..|.+++..+...
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3456788999999999999998877654
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=87.14 E-value=8.2 Score=39.09 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=37.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 454 (680)
.+.-.++.-++|.|||..+..++......+ .+++++.-.....+..+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g-------~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQG-------KKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCC-------CEEEEEEcCCCHHHHHHHHHHC
Confidence 345577889999999999999987665544 2578887766666666666554
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=87.07 E-value=7.2 Score=42.65 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
++-.+|.-..|.|||.++..++..+..... ..++.+|+....-..=.+.+..|.....+.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-----~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~---------- 201 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-----ASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK---------- 201 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCeEEEEecccccccHHHHHHHHHHHcCCceEecC----------
Confidence 455777899999999999999877653321 12355555543221222334443322222111111
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----~~~~rllLTgTP~~n~~~el~sll 551 (680)
+-..+......+ .+.++|+||++=+..... .....+..+ .....++|+||-=...+.+.+..+
T Consensus 202 ---------~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 202 ---------DGGDLQLALAEL--RNKHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred ---------CcccHHHHHHHh--cCCCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 111122222323 246999999996543222 233333333 234568999999888877775544
Q ss_pred h
Q psy12466 552 D 552 (680)
Q Consensus 552 ~ 552 (680)
.
T Consensus 270 ~ 270 (374)
T PRK14722 270 R 270 (374)
T ss_pred H
Confidence 4
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.5 Score=48.11 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+|.+|.-++|+|||..+-+++..+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 35678999999999999998888877643
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=86.92 E-value=1.2 Score=47.68 Aligned_cols=140 Identities=13% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHH-HHHHHHHHhCCCCeeEee--c-CCcchh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSN-WNDEFKKWLGLTRMCPYH--V-NQKNKA 471 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~q-W~~E~~~~~~~~~v~~~~--~-~~~~~~ 471 (680)
.+...+.-...|+|||.+-...+........ ...-+||++|...+.+ =.+-+..+....++.+.. + ....+.
T Consensus 62 ~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~----ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~ 137 (397)
T KOG0327|consen 62 KGHDVIAQAQSGTGKTAAFLISILQQIDMSV----KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRRE 137 (397)
T ss_pred cCCceeEeeeccccchhhhHHHHHhhcCcch----HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhh
Confidence 4577888899999999983222221111100 1122799999876644 344444444444444332 2 222222
Q ss_pred hhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCccccc--CcccHHHHHHHhcccc-eEEEEeCCC
Q psy12466 472 EDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLK--NGKSKLYELMTGLNIR-KRILLSGTP 539 (680)
Q Consensus 472 ~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~k--n~~s~~~~~l~~l~~~-~rllLTgTP 539 (680)
..........|++.|...+....+ .+......++++|||.... +...+.+.....+..+ ..+++|||-
T Consensus 138 ~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 138 DQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred hhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 222223335577777755544332 3455568899999999764 4456666666666443 568899996
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=86.72 E-value=0.56 Score=49.48 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=27.0
Q ss_pred CCCCEEEEehhHHHHHH--Hhhh-cCCCcEEEEcCCCCCCC
Q psy12466 238 RVSPVLIISYEMLIRAY--QTIV-DTEFDLLICDEKSLLKP 275 (680)
Q Consensus 238 ~~~~V~itsYe~l~~~~--~~l~-~~~~~~vI~DEaH~lKN 275 (680)
...+|+|++|..+.... ..+. ...-.+||+||||+|-+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChHH
Confidence 45799999999986433 1111 23467999999999954
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=86.72 E-value=0.56 Score=49.48 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=27.0
Q ss_pred CCCCEEEEehhHHHHHH--Hhhh-cCCCcEEEEcCCCCCCC
Q psy12466 238 RVSPVLIISYEMLIRAY--QTIV-DTEFDLLICDEKSLLKP 275 (680)
Q Consensus 238 ~~~~V~itsYe~l~~~~--~~l~-~~~~~~vI~DEaH~lKN 275 (680)
...+|+|++|..+.... ..+. ...-.+||+||||+|-+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChHH
Confidence 45799999999986433 1111 23467999999999954
|
|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=4.4 Score=40.60 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=26.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
++.-.||+|||...|-.+..+...+. +++++-|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~ag~-------kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYSEK-------KCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCC-------ceEEEEec
Confidence 55778999999888888877766653 48888885
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=86.18 E-value=3.7 Score=50.80 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=77.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.|-+-|++++..+. ...+-++|--..|+|||.+.-++.......+. +++.++|+.-.. ..+.
T Consensus 381 ~Ls~eQ~~Av~~i~--------~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~-------~V~g~ApTgkAA---~~L~ 442 (1102)
T PRK13826 381 RLSDEQKTAIEHVA--------GPARIAAVVGRAGAGKTTMMKAAREAWEAAGY-------RVVGGALAGKAA---EGLE 442 (1102)
T ss_pred CCCHHHHHHHHHHh--------ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-------eEEEEcCcHHHH---HHHH
Confidence 58889999998763 12355788889999999887777666655542 478888875443 2222
Q ss_pred HHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH--HhhhccCceEEEEcCcccccCcccHHHHHHHhc-cc
Q psy12466 453 KWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY--QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NI 529 (680)
Q Consensus 453 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~--~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~ 529 (680)
+-.+. .. .|...+.... ....-..-++||||||..+. .....+.+... ..
T Consensus 443 e~~Gi-~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~--~~~m~~Ll~~~~~~ 495 (1102)
T PRK13826 443 KEAGI-QS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA--SRQMALFVEAVTRA 495 (1102)
T ss_pred HhhCC-Ce------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC--HHHHHHHHHHHHhc
Confidence 22111 00 0111110000 00001235799999999883 34444555554 46
Q ss_pred ceEEEEeCCCCCCCHHH
Q psy12466 530 RKRILLSGTPLQNDLQE 546 (680)
Q Consensus 530 ~~rllLTgTP~~n~~~e 546 (680)
..+++|-|=|-|..+.+
T Consensus 496 garvVLVGD~~QL~~V~ 512 (1102)
T PRK13826 496 GAKLVLVGDPEQLQPIE 512 (1102)
T ss_pred CCEEEEECCHHHcCCCC
Confidence 78999999998765544
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.10 E-value=4.8 Score=43.25 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=23.7
Q ss_pred ccCCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 393 ASLDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 393 ~~~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
.-....|.+|.-.+|+|||+.|=|.+..
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3467899999999999999998887754
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.10 E-value=15 Score=43.57 Aligned_cols=46 Identities=17% Similarity=0.035 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|..+++.+.+.+.. ..-.+.-++.-+.|.|||..|-+++..+...
T Consensus 22 GQe~~v~~L~~aI~~--~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 22 GQDHIVQTLKNIIKS--NKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred CcHHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 466666655554321 1223345788999999999999998777543
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=6.1 Score=46.26 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.|...+..|.+.+.. ..-...-|+.-+.|+|||..|.+++..+...
T Consensus 20 Gq~~i~~~L~~~l~~--~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALIS--NRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHc--CCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 455666655544321 1123456788999999999999999888654
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=19 Score=38.49 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=63.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
..+.-..|.|||.++..++..+...+ ++++++.-..--.-..+++..|.....+.++........
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g-------~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dp-------- 181 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQG-------KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADP-------- 181 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-------CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCH--------
Confidence 34556999999999999988877654 246666543211111111222221111211111100000
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHH--HHHHHh----c----ccceEEEEeCCCCCCCHHHHHH
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKL--YELMTG----L----NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~--~~~l~~----l----~~~~rllLTgTP~~n~~~el~s 549 (680)
-......+.......+|+||+|=+-+..+..... .+.+.+ + .....+.+++|--++.+.....
T Consensus 182 -------a~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 182 -------ASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred -------HHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 0111122222334679999999998875544321 111111 1 2234599999966666665433
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.84 E-value=3.5 Score=43.66 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=24.6
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCC
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPY 427 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~ 427 (680)
--++.-..|.|||..|.+++..+....+.
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~ 54 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPT 54 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 37788889999999999999999876643
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=85.61 E-value=1.6 Score=51.73 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=49.8
Q ss_pred eEEEEECcc-cHHHHHHHHHHHhCC--CCeeEEeecC-Cc-ch-hhhcccCCCCEEEEehhHHHHH--HH-------hhh
Q psy12466 194 RVLIVTPSS-LTSNWNDEFKKWLGL--TRMCPYHVNQ-KN-KA-EDYVYSRVSPVLIISYEMLIRA--YQ-------TIV 258 (680)
Q Consensus 194 ~~LIV~P~s-l~~nW~~E~~k~~~~--~~~~~~~~~~-~~-~~-~~~~~~~~~~V~itsYe~l~~~--~~-------~l~ 258 (680)
.++||+|.. |..+|.+++..++.. ..+....+++ .. .. .........+|+++|-+.+..+ .+ .+.
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~ 192 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKF 192 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcc
Confidence 589999987 456777776655422 3444433331 11 11 1112224578999988877321 11 122
Q ss_pred cCCCcEEEEcCCCCCCCCCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGN 279 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~ 279 (680)
..++.++|+||||.|---.++
T Consensus 193 ~r~l~~~IVDEaDsILiDear 213 (762)
T TIGR03714 193 LRPFNYVIVDEVDSVLLDSAQ 213 (762)
T ss_pred cccCcEEEEecHhhHhhccCc
Confidence 346889999999998554443
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.60 E-value=11 Score=40.36 Aligned_cols=125 Identities=20% Similarity=0.288 Sum_probs=74.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
-++.---|.|||.+..-++..+...+. ++|+.+--+--.-=.++++.|.....+.++.+.......
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~-------~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA------- 207 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGK-------SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA------- 207 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCC-------eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH-------
Confidence 445578899999888888888888764 577776655555555556666544444444432111110
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc---------ccceEEEE--eCCCCCCCHHHH
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL---------NIRKRILL--SGTPLQNDLQEF 547 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l---------~~~~rllL--TgTP~~n~~~el 547 (680)
-+-|+. +..-...++|+|++|=|-|+-|....+ ..+.++ .++|.++| =||-=||.+...
T Consensus 208 ----aVafDA----i~~Akar~~DvvliDTAGRLhnk~nLM-~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 208 ----AVAFDA----IQAAKARGIDVVLIDTAGRLHNKKNLM-DELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA 277 (340)
T ss_pred ----HHHHHH----HHHHHHcCCCEEEEeCcccccCchhHH-HHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence 012333 333445789999999999997754432 222222 24454444 588888876654
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.6 Score=48.23 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=55.1
Q ss_pred eEEEEECcccHH-H---HHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc---CCCcEEE
Q psy12466 194 RVLIVTPSSLTS-N---WNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD---TEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P~sl~~-n---W~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~---~~~~~vI 266 (680)
.+|||||+--+. | =.+|+-++.+...+.++.|+...+..........+++|.+=+.|..+.+.-.. ...+++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 689999976543 3 44455555555566677776655544444445788999999988766553221 2347899
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+|||.||-..
T Consensus 236 lDEADrlLd~ 245 (543)
T KOG0342|consen 236 LDEADRLLDI 245 (543)
T ss_pred eecchhhhhc
Confidence 9999998643
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=85.43 E-value=3.3 Score=45.66 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=22.5
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
....|.+|.-++|+|||..|-+++..+
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHh
Confidence 456789999999999999988887653
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=85.42 E-value=5.5 Score=44.23 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=20.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
.....+|.-+.|+|||..+-+++...
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999888776543
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.33 E-value=31 Score=40.14 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=30.6
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
|...+..+.+.+.. ....+.-|+.-..|+|||..|.+++..+....
T Consensus 21 Qe~iv~~L~~aI~~--~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILN--NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 55555555443211 12234567889999999999999998886543
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=85.26 E-value=12 Score=41.81 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
-.+++-..|.|||.++..++..+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~ 125 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKK 125 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4678899999999999999988763
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=85.24 E-value=17 Score=40.46 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=21.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..++--.|.|||.++..++..+...+
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G 128 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKG 128 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 45677899999999999988877654
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=85.19 E-value=10 Score=36.13 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=65.4
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc---chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS---SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~---sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
+.+-.-|.|||..++.++..+...+. ++|+|-=. +.+. |. |...
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~-------~vllvD~D~q~~~~~-~~-----~~~~-------------------- 50 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGY-------KVGLLDADIYGPSIP-KM-----WRGP-------------------- 50 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCC-------cEEEEeCCCCCCCch-HH-----HhCc--------------------
Confidence 45667799999999999998887663 47776321 1111 11 0000
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANP 556 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p 556 (680)
.....+......+....+|+||+|=...+. .... .+..+.....+++..+|-..+..+...++.++..
T Consensus 51 -------~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~---~~~~-~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 51 -------MKMGAIKQFLTDVDWGELDYLVIDMPPGTG---DEHL-TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred -------chHHHHHHHHHHhhcCCCCEEEEeCCCCCc---HHHH-HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 001223333333333579999999877542 1111 1222234455666668888888888888877753
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=85.10 E-value=8.4 Score=44.15 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
....|.+|+-.+|.|||+.|=|.+..-... ++=|=-.-|+..|.-|-++-
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~N----------FisVKGPELlNkYVGESErA-------------------- 592 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAGAN----------FISVKGPELLNKYVGESERA-------------------- 592 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhccCc----------eEeecCHHHHHHHhhhHHHH--------------------
Confidence 456789999999999999988877543221 34444456777776664431
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
++.....-+...+.+|++||...+
T Consensus 593 ---------------VR~vFqRAR~saPCVIFFDEiDaL 616 (802)
T KOG0733|consen 593 ---------------VRQVFQRARASAPCVIFFDEIDAL 616 (802)
T ss_pred ---------------HHHHHHHhhcCCCeEEEecchhhc
Confidence 112222233456889999999877
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=85.06 E-value=12 Score=41.85 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.3
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-.+++-..|.|||.++..++..+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 35677899999999999999888776
|
|
| >COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.01 E-value=1.5 Score=46.70 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=32.1
Q ss_pred CceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCH
Q psy12466 501 EFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 501 ~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~ 544 (680)
+=.+||+||||+ ....+....+.+|-.+.+..+||.+.|-++
T Consensus 243 ~dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 243 NDAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CCeEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 446899999998 344555666778888889999999976543
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=19 Score=42.06 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.|...+..|.+.+.. ..... -|+.-+.|+|||..+..++..+..
T Consensus 20 Gq~~~~~~L~~~i~~---~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 20 GQEHVVQTLRNAIAE---GRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467777766554321 12223 378999999999999999988754
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=84.88 E-value=0.64 Score=48.80 Aligned_cols=40 Identities=35% Similarity=0.482 Sum_probs=29.7
Q ss_pred CCCEEEEehhHHHHHHH----------hhhc---CCCc-EEEEcCCCCCCCCCC
Q psy12466 239 VSPVLIISYEMLIRAYQ----------TIVD---TEFD-LLICDEKSLLKPPSG 278 (680)
Q Consensus 239 ~~~V~itsYe~l~~~~~----------~l~~---~~~~-~vI~DEaH~lKN~~s 278 (680)
..+|+.++|.+++.... +|.+ ..|| +||+||+|+.||-.+
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 56799999999987631 2222 2455 888999999999865
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=84.85 E-value=5.4 Score=42.45 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=25.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.|.+|.-.+|+|||..+.|++..+...+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g 184 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG 184 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 456788889999999999999999988665
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=84.81 E-value=5 Score=40.35 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=39.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhc-CCCCCCccceEEEEeccchHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQ-GPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~-~~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 454 (680)
.+.-.+++-++|+|||..++.++...... +. ++++|.-..-..+..+++..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge-------~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE-------KVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT---------EEEEESSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC-------cEEEEEecCCHHHHHHHHHHc
Confidence 44557888899999999999999877666 54 488888877777777777765
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=84.63 E-value=17 Score=40.01 Aligned_cols=134 Identities=21% Similarity=0.203 Sum_probs=78.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
++-..|.-.+|.|||.+..-+++.+..... .+++=||.- +.=+ -=.++++.|+.-+.+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-----~~kVaiITtDtYRI-GA~EQLk~Ya~im~vp~------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-----KKKVAIITTDTYRI-GAVEQLKTYADIMGVPL------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-----CcceEEEEeccchh-hHHHHHHHHHHHhCCce-------------
Confidence 555677789999999888777777762221 123444443 3322 22334444432222111
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----ccceEEEEeCCCCCCCHHHHHHH
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----NIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----~~~~rllLTgTP~~n~~~el~sl 550 (680)
.++.+..-|...+..+.+ +|+|.+|=+-+---... ...-+..+ ....-+.||+|-=.+.+.+++..
T Consensus 264 ------~vv~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~-~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 264 ------EVVYSPKELAEAIEALRD--CDVILVDTAGRSQYDKE-KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred ------EEecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHH-HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 233445555555555554 59999997654211111 12222222 34456999999999999999999
Q ss_pred HhhhCCCC
Q psy12466 551 NDFANPGV 558 (680)
Q Consensus 551 l~fl~p~~ 558 (680)
+.++...-
T Consensus 335 f~~~~i~~ 342 (407)
T COG1419 335 FSLFPIDG 342 (407)
T ss_pred hccCCcce
Confidence 99887654
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=84.61 E-value=23 Score=38.78 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=25.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
....+.++.-..|+|||..+-.++..+....
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 3456789999999999999999988876654
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.23 E-value=16 Score=39.07 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=39.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..++|.|......+...+.. ..-.+.-++.-..|+||+..|.+|+..+.-..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDA--GRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 46889999998887765321 12234566789999999999999998887654
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=84.17 E-value=7 Score=47.08 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=70.9
Q ss_pred CCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcccHHHHHHHhc----ccceEEEEeCCCCCC--CHHHHHHH
Q psy12466 479 VSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKSKLYELMTGL----NIRKRILLSGTPLQN--DLQEFFYL 550 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l----~~~~rllLTgTP~~n--~~~el~sl 550 (680)
...|+++|-..+..++-. +.-..+..+|+||||++.+..+-.+ .++.+ +..+..++|+.|-.. ....+-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaF-I~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAF-ILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHH-HHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 467888888888776421 2223578999999999964433322 22333 456789999999652 33444444
Q ss_pred HhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHHhhcCCC--cEEEEEEecC
Q psy12466 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNS--KRETLLVCRA 628 (680)
Q Consensus 551 l~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~~LP~--k~e~~v~v~m 628 (680)
+.-|.-... ++.=|.-.+|...|-. .....+.|+|
T Consensus 86 mk~L~i~~v-------------------------------------------~l~prf~~~V~~~l~~~~~~V~ei~V~l 122 (814)
T TIGR00596 86 MRNLFLRHV-------------------------------------------YLWPRFHVEVASSLEKHKAEVIELHVSL 122 (814)
T ss_pred HHHhCcCeE-------------------------------------------EEeCCCchHHHHHhccCCCeEEEEEeCC
Confidence 444332211 1111222333333332 3456678999
Q ss_pred CHHHHHHHHHHHHHH
Q psy12466 629 TPLQQSLYLRCVEYW 643 (680)
Q Consensus 629 s~~Q~~lY~~l~~~~ 643 (680)
|+..+++...+.+-.
T Consensus 123 ~~~m~~Iq~~l~~~l 137 (814)
T TIGR00596 123 TDSMSQIQSAILECL 137 (814)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999988887766533
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.15 E-value=7.4 Score=41.83 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.|...+..+.+.+.. ..-.+.-++.-+.|.|||..+.+++..+....
T Consensus 10 ~q~~~~~~L~~~~~~--~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 10 LQPVVVKMLQNSIAK--NRLSHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred hHHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 455566655544211 11233348889999999999999998876544
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=15 Score=40.77 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=71.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHH-hcCCCCCCccceEEEEeccc--hHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 400 AILADEMGLGKTLQCIALIWTLL-RQGPYGMPVIRKVLIVTPSS--LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~-~~~~~~~~~~~~~LIV~P~s--ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
.++.-..|.|||.++..++..+. ..+. +++++.-.. ....| .+.+|.....+..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~-------~V~Lit~Dt~R~aA~e--QLk~yAe~lgvp~~------------- 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGK-------SVSLYTTDNYRIAAIE--QLKRYADTMGMPFY------------- 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCC-------eEEEecccchhhhHHH--HHHHHHHhcCCCee-------------
Confidence 45678999999999999987653 3332 344444322 22334 44444332211111
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc--------ccceEEEEeCCCCCCCHHHHH
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL--------NIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--------~~~~rllLTgTP~~n~~~el~ 548 (680)
....+......+....+|+||+|=+-+..... .....+..+ .....++|+||-=++.+.+..
T Consensus 284 ---------~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 284 ---------PVKDIKKFKETLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred ---------ehHHHHHHHHHHHhCCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 11112222333444678999999776543222 223333322 224569999999888888888
Q ss_pred HHHhhhCCC
Q psy12466 549 YLNDFANPG 557 (680)
Q Consensus 549 sll~fl~p~ 557 (680)
..+..+.+.
T Consensus 354 ~~f~~~~~~ 362 (432)
T PRK12724 354 KAYESLNYR 362 (432)
T ss_pred HHhcCCCCC
Confidence 777666554
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.97 E-value=2.5 Score=46.68 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
..+.|.+|.-.+|+|||..+-+++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45688999999999999998877754
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=83.86 E-value=3.9 Score=46.99 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec--c-----chHHHHHHHHHHHhCCCCeeEeecCCcc
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP--S-----SLTSNWNDEFKKWLGLTRMCPYHVNQKN 469 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P--~-----sll~qW~~E~~~~~~~~~v~~~~~~~~~ 469 (680)
+.-.|+.-|+|.|||.|.=-++..-.-... .-+|-|. . |+..--.+|+.--++.- |. | +.
T Consensus 280 ~QVLiI~GeTGSGKTTQiPQyL~EaGytk~-------gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e-VG-Y----sI 346 (902)
T KOG0923|consen 280 HQVLIIVGETGSGKTTQIPQYLYEAGYTKG-------GKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE-VG-Y----SI 346 (902)
T ss_pred CcEEEEEcCCCCCccccccHHHHhcccccC-------CceEeecCcchHHHHHHHHHHHHHhCcccccc-cc-e----EE
Confidence 466788999999999997665543221111 1234443 2 23333444443322221 00 0 00
Q ss_pred hhhhhhhcCCCCEEEEeHHHHHHHHH-hhhccCceEEEEcCcccccCcccHHHHHHHhc---ccce-EEEEeCCCCCCCH
Q psy12466 470 KAEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEGHRLKNGKSKLYELMTGL---NIRK-RILLSGTPLQNDL 544 (680)
Q Consensus 470 ~~~~~~~~~~~~vvI~ty~~l~~~~~-~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l---~~~~-rllLTgTP~~n~~ 544 (680)
+.++-. ....-+=.+|-.++.+..- ...--.+.++|+||||.=.-..-.+.-.+..+ +..- .++.|||---..+
T Consensus 347 RFEdcT-SekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekF 425 (902)
T KOG0923|consen 347 RFEDCT-SEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKF 425 (902)
T ss_pred Eecccc-CcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHH
Confidence 100000 0112233566666655432 11123588999999996322222233333322 3333 3777888765566
Q ss_pred HHHHHHHh-hhCCCC
Q psy12466 545 QEFFYLND-FANPGV 558 (680)
Q Consensus 545 ~el~sll~-fl~p~~ 558 (680)
.++|.-.. |..|+.
T Consensus 426 S~fFDdapIF~iPGR 440 (902)
T KOG0923|consen 426 SAFFDDAPIFRIPGR 440 (902)
T ss_pred HHhccCCcEEeccCc
Confidence 66554322 445554
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=83.84 E-value=22 Score=36.11 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=30.6
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCC-----CCccceEEEEecc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYG-----MPVIRKVLIVTPS 441 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~-----~~~~~~~LIV~P~ 441 (680)
-++|+-..|+|||..++.++..+..-.+.. .....++|+++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E 50 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC
Confidence 378999999999999999988765432211 1224578999954
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=83.77 E-value=3.6 Score=48.51 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=57.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|.++|..++.-+.+.+. .+....++.--.|.|||+.+.+++... + +++|||+|. ....+|.+++
T Consensus 12 ~~~~~Q~~ai~~l~~~~~----~~~~~~ll~Gl~gs~ka~lia~l~~~~---~-------r~vLIVt~~~~~A~~l~~dL 77 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIE----AGEKHQTLLGVTGSGKTFTMANVIARL---Q-------RPTLVLAHNKTLAAQLYSEF 77 (652)
T ss_pred CCChHHHHHHHHHHHhhh----cCCCcEEEEcCCCcHHHHHHHHHHHHh---C-------CCEEEEECCHHHHHHHHHHH
Confidence 477899999998877542 222345688889999999877655432 1 359999998 6669999999
Q ss_pred HHHhCCCCeeEe
Q psy12466 452 KKWLGLTRMCPY 463 (680)
Q Consensus 452 ~~~~~~~~v~~~ 463 (680)
..|+|...|..+
T Consensus 78 ~~~~~~~~v~~f 89 (652)
T PRK05298 78 KEFFPENAVEYF 89 (652)
T ss_pred HHhcCCCeEEEe
Confidence 999998666655
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.75 E-value=6.2 Score=38.86 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=59.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCC
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 480 (680)
++.-.|..|||..-|-.+..+...+. +++|..|.. ...+....+.-..|.+ ..
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g~-------~v~vfkp~i---------D~R~~~~~V~Sr~G~~-----------~~ 60 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAGM-------KVLVFKPAI---------DTRYGVGKVSSRIGLS-----------SE 60 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcCC-------eEEEEeccc---------ccccccceeeeccCCc-----------cc
Confidence 45678999999988877777777663 588888851 1111111111111111 11
Q ss_pred CEEEEeHHHHHHHHHhhhc-cCceEEEEcCcccccCcccHHHHHHHhccc--ceEEEEeCC
Q psy12466 481 PVLIISYEMLIRAYQTIVD-TEFDLLICDEGHRLKNGKSKLYELMTGLNI--RKRILLSGT 538 (680)
Q Consensus 481 ~vvI~ty~~l~~~~~~l~~-~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~--~~rllLTgT 538 (680)
-++|-+-..+...+..... ...++|.+||||-+.. ..-..+..+.. ..++++.|.
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 2333333333333333222 2368999999998843 44445555533 456666664
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=83.67 E-value=30 Score=36.13 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=60.9
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
-.++.-..|.|||.++..++..+...+ .++++|.-..--..=.+++..|.....+.++........
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g-------~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp------- 139 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQG-------KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADP------- 139 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC-------CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCH-------
Confidence 344557999999999999998886654 246666643211111344454543333333221111000
Q ss_pred CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----------ccceEEEEeCCC
Q psy12466 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----------NIRKRILLSGTP 539 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----------~~~~rllLTgTP 539 (680)
-..............+|+||+|=+-+... +......+..+ .....+++++|-
T Consensus 140 --------~~~~~~~l~~~~~~~~D~ViIDT~G~~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~ 202 (272)
T TIGR00064 140 --------AAVAFDAIQKAKARNIDVVLIDTAGRLQN-KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT 202 (272)
T ss_pred --------HHHHHHHHHHHHHCCCCEEEEeCCCCCcc-hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC
Confidence 01111222223345689999999877654 22222222222 233458888873
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >KOG0740|consensus | Back alignment and domain information |
|---|
Probab=83.64 E-value=2.7 Score=46.40 Aligned_cols=49 Identities=29% Similarity=0.288 Sum_probs=38.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
...+|-+|+-+.|.|||..+.|++..... .+.=|.|.+|...|..|-++
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~a----------tff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGA----------TFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcc----------eEeeccHHHhhhhccChHHH
Confidence 34567889999999999999888865433 25678888999999777654
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.64 E-value=23 Score=40.24 Aligned_cols=44 Identities=27% Similarity=0.097 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~ 423 (680)
-|...+..+.+.+.. ....+ -++.-+.|.|||..|..++..+..
T Consensus 20 Gq~~i~~~L~~~i~~---~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 20 GQEIVVRILKNAVKL---QRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 466666666554321 12233 467999999999999888877654
|
|
| >PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=83.47 E-value=5 Score=39.71 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=55.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
-..+|...+|.|||..++.-+..+...|.+ +||. .+-.+=..|......++.+......
T Consensus 6 LkIflG~apGVGKTy~ML~ea~~l~~~G~D--------VViG--~vethgR~et~~l~~gLe~iP~~~i----------- 64 (211)
T PF02702_consen 6 LKIFLGAAPGVGKTYAMLQEAHRLKEQGVD--------VVIG--YVETHGRPETEALLEGLEVIPRKKI----------- 64 (211)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT----------EEEE--E---TT-HHHHHHHCTS-B---EEE-----------
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHCCCC--------EEEE--EecCCCcHHHHHHHcCCCcCCCeeE-----------
Confidence 357899999999999999999999988742 2221 1111112333333333322211100
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcC-cccc--cCcccHHHHHHHhcccceEEEEeCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDE-GHRL--KNGKSKLYELMTGLNIRKRILLSGT 538 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDE-aH~~--kn~~s~~~~~l~~l~~~~rllLTgT 538 (680)
......+.-+ +.+.+...++++|++|| ||.= .+...+.++-+..|-..-.=..|..
T Consensus 65 ~y~g~~~~E~-----DldaiL~R~P~vvLVDELAHtN~pgsr~~kR~qDVeeLL~aGIdV~TTl 123 (211)
T PF02702_consen 65 EYRGRTLEEM-----DLDAILARRPQVVLVDELAHTNAPGSRHKKRYQDVEELLDAGIDVYTTL 123 (211)
T ss_dssp EETTEEEEE-------HHHHHHH--SEEEES-TT-B--TT-SSSBHHHHHHHHHHTT-EEEEEE
T ss_pred eeCCEecccC-----CHHHHHhcCCCEEEeCcccccCCCCCCCcccHHhHHHHHHCCCeEEEee
Confidence 0011222222 23455566899999999 7742 2345666777666644333333333
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B. |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=83.46 E-value=13 Score=37.74 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=36.0
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
..+...+++-++|.|||..++.++......+. ++++|.-.....+-.+.+..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-------~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------PGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------cEEEEEeeCCHHHHHHHHHH
Confidence 34556778999999999999998877665543 47888765444444444443
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >KOG0729|consensus | Back alignment and domain information |
|---|
Probab=83.43 E-value=9 Score=39.42 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=22.6
Q ss_pred hccCCCCceEEEcCCCCChHHHHHHHH
Q psy12466 392 LASLDLEGAILADEMGLGKTLQCIALI 418 (680)
Q Consensus 392 ~~~~~~~g~iLaDemGlGKT~~aiali 418 (680)
+......|.+|.-.+|+|||+.|-|.+
T Consensus 206 lgidppkgvllygppgtgktl~arava 232 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVA 232 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHh
Confidence 445678899999999999999887766
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=83.22 E-value=1.7 Score=42.05 Aligned_cols=139 Identities=20% Similarity=0.215 Sum_probs=67.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH-HHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW-NDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW-~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
..+.-..|-|||..|++++......+. +++|| -.+...| ..|..-+-. ..+.+............ ..
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~g~-------~v~iv--QFlKg~~~~GE~~~l~~-~~~~~~~~g~g~~~~~~--~~ 75 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGHGK-------KVGVI--QFIKGAWPNGERAAFEP-HGVEFQVMGTGFTWETQ--NR 75 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCC-------eEEEE--EEecCCcccChHHHHHh-cCcEEEECCCCCeecCC--Cc
Confidence 445677999999999999988887763 45555 1122223 122222111 11222111110000000 00
Q ss_pred CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc----ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG----KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~----~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
..+. -.-.+.+......+....+|+||+||.-..-+. .......+..-....-++|||.-....+.|+..++
T Consensus 76 ~~~~-~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 76 EADT-AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred HHHH-HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCcee
Confidence 0000 000111222234455678999999998754332 23344444443455579999986655555554443
|
Alternate name: corrinoid adenosyltransferase. |
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=82.94 E-value=4.2 Score=38.92 Aligned_cols=133 Identities=23% Similarity=0.212 Sum_probs=67.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH-HHH--HHHHhCCCCeeEeecCCc----chhhh
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW-NDE--FKKWLGLTRMCPYHVNQK----NKAED 473 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW-~~E--~~~~~~~~~v~~~~~~~~----~~~~~ 473 (680)
.+.-..|.|||..|++++......+. ++++|= .+...| ..| +-+.+|...+..+..... .....
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g~-------~v~~vQ--FlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHGY-------RVGVVQ--FLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEE--EeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHH
Confidence 44567899999999999988877763 456531 111112 112 222234332222211100 00000
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc----ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG----KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~----~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~s 549 (680)
... ..+.+......+....+|+||+||.=..-+. .......+..-....-++|||--.+..+.|+..
T Consensus 77 ~~~---------a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 77 IAA---------AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred HHH---------HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 000 0111222233455678999999998665322 233444444444455699999876666666544
Q ss_pred HH
Q psy12466 550 LN 551 (680)
Q Consensus 550 ll 551 (680)
++
T Consensus 148 ~V 149 (159)
T cd00561 148 LV 149 (159)
T ss_pred ee
Confidence 43
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.90 E-value=6.4 Score=43.35 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=54.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
.+++-=.|.|||.++.-++.++...+. ++|+||-..--.--.++++.......+.+|........
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~~-------kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~P-------- 167 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKGK-------KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDP-------- 167 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcCC-------ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCH--------
Confidence 566777899999999999999998543 35666654333333444555544455555554221111
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
-+...+.++......+|+||+|=|-|+.
T Consensus 168 -------v~Iak~al~~ak~~~~DvvIvDTAGRl~ 195 (451)
T COG0541 168 -------VEIAKAALEKAKEEGYDVVIVDTAGRLH 195 (451)
T ss_pred -------HHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 1123334445555566677777666553
|
|
| >PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 | Back alignment and domain information |
|---|
Probab=82.84 E-value=6.5 Score=38.28 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=26.5
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
++.-.|+.|||...|..+..+...+. +++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~-------~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGK-------KVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--------EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCC-------eEEEEEec
Confidence 34568999999999998888777653 58888885
|
7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F .... |
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=82.83 E-value=28 Score=40.83 Aligned_cols=46 Identities=17% Similarity=0.064 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..+.+.+.. ..-...-|+.-..|.|||..|..++..+.-.
T Consensus 20 GQe~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 20 AQEHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 466666665553211 1223446688999999999999999887654
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=82.72 E-value=4.4 Score=45.15 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=55.3
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHh--CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWL--GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.=.||+||+ ++..|-..|.++|. ...++...|+++....+.........+++++=+.+...... ..=.+-.++|+
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 346899996 45678888999885 34566666666543332222225678999999988654432 11234678999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
|||.|+-..
T Consensus 377 DEadrmfdm 385 (731)
T KOG0339|consen 377 DEADRMFDM 385 (731)
T ss_pred echhhhhcc
Confidence 999999764
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.65 E-value=13 Score=43.10 Aligned_cols=45 Identities=22% Similarity=0.108 Sum_probs=29.7
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..|...+.. ..-.+.-++.-+.|.|||..+-+++..+...
T Consensus 21 qe~iv~~L~~~i~~--~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 21 QDFVVETLKHSIES--NKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred cHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 55555555443321 1122336788999999999999999887643
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=82.58 E-value=2.7 Score=45.77 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
....|.+|.-+.|+|||..+-+++..+
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 346789999999999999988887643
|
Many proteins may score above the trusted cutoff because an internal |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=82.58 E-value=26 Score=40.05 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=61.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cc---hHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SS---LTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~s---ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
+...|.-..|.|||.++..++..+...+. .+++.+|.- .. -..||...- ..+.+.+...
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~-----gkkVaLIdtDtyRigA~EQLk~ya----~iLgv~v~~a-------- 413 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHA-----PRDVALVTTDTQRVGGREQLHSYG----RQLGIAVHEA-------- 413 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCceEEEecccccccHHHHHHHhh----cccCceeEec--------
Confidence 34445578999999999888877655421 123555543 21 224443221 1111111110
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc----ccceEEEEeCCCCCCCHHHHHH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL----NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~s 549 (680)
.+-..+...+..+ ..+++||||.+-....... ....+..+ .....+++++++-...+.++..
T Consensus 414 -----------~d~~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~-l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 414 -----------DSAESLLDLLERL--RDYKLVLIDTAGMGQRDRA-LAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred -----------CcHHHHHHHHHHh--ccCCEEEecCCCcchhhHH-HHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHH
Confidence 0112233333333 2589999999976532222 11112111 3455688888875555555544
Q ss_pred HHh
Q psy12466 550 LND 552 (680)
Q Consensus 550 ll~ 552 (680)
.+.
T Consensus 480 ~f~ 482 (559)
T PRK12727 480 RFA 482 (559)
T ss_pred HHH
Confidence 433
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=82.04 E-value=15 Score=37.23 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSN 446 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~q 446 (680)
.+.-.++.-+.|.|||..++.++......+. +++.|+......+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~-------~~~yi~~e~~~~~ 66 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGY-------SVSYVSTQLTTTE 66 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCC-------cEEEEeCCCCHHH
Confidence 3456788899999999999998887765542 4777776543333
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=81.87 E-value=19 Score=40.93 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
....+|.-+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5779999999999999988887654
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.81 E-value=2.4 Score=50.64 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=67.7
Q ss_pred eEEEEECcccHHH-HHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH------HhhhcCCCcE
Q psy12466 194 RVLIVTPSSLTSN-WNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY------QTIVDTEFDL 264 (680)
Q Consensus 194 ~~LIV~P~sl~~n-W~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~------~~l~~~~~~~ 264 (680)
.+|=|.|.-.+.| -.+-++.|.. +..+.+-||+.....+........+|+|||=|++.... ..|.+.+ +
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr--~ 152 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVR--Y 152 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCc--E
Confidence 5688888655544 4555555542 25566777776666655556677889999999997543 3455544 5
Q ss_pred EEEcCCCCCCCCCCC--CCccccCCC----CCCceeccCCCC
Q psy12466 265 LICDEKSLLKPPSGN--SPGNDSGIP----SLPRKSDSGIGS 300 (680)
Q Consensus 265 vI~DEaH~lKN~~s~--~~~a~~~l~----~~~r~~LTG~~~ 300 (680)
||+||.|-+.+.+-. .+-++.+|. ...|+.||-+..
T Consensus 153 VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~ 194 (814)
T COG1201 153 VIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVG 194 (814)
T ss_pred EEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccC
Confidence 999999999976533 344443333 234888887544
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=81.61 E-value=13 Score=38.42 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+.+|.-+.|.|||..+.+++......+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G 130 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAG 130 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 356788889999999999999876655544
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=6.8 Score=50.88 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=77.2
Q ss_pred ccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHH
Q psy12466 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWN 448 (680)
Q Consensus 369 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~ 448 (680)
.+...|-+-|++|+..++. ...+-.+|.--.|+|||.+.-+++..+....... ...++.++|+.-...
T Consensus 963 ~~~~~Lt~~Q~~Av~~il~-------s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~---~~~V~glAPTgrAAk-- 1030 (1747)
T PRK13709 963 ELMEGLTSGQRAATRMILE-------STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESE---RPRVVGLGPTHRAVG-- 1030 (1747)
T ss_pred HhcCCCCHHHHHHHHHHHh-------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhccc---CceEEEECCcHHHHH--
Confidence 3445688999999988764 2345788889999999988766665554321110 124788899754422
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~ 528 (680)
++.. .+ ........+.... +.+.. .........+++|||||-.+.+ ....+.+..+.
T Consensus 1031 -~L~e-~G---------i~A~TI~s~L~~~---------~~~~~-~~~~~~~~~~llIVDEaSMv~~--~~m~~Ll~~~~ 1087 (1747)
T PRK13709 1031 -EMRS-AG---------VDAQTLASFLHDT---------QLQQR-SGETPDFSNTLFLLDESSMVGN--TDMARAYALIA 1087 (1747)
T ss_pred -HHHh-cC---------cchhhHHHHhccc---------ccccc-cccCCCCCCcEEEEEccccccH--HHHHHHHHhhh
Confidence 2222 11 0111111110000 00000 0001113458999999998843 33444455444
Q ss_pred -cceEEEEeCCCCCCCH
Q psy12466 529 -IRKRILLSGTPLQNDL 544 (680)
Q Consensus 529 -~~~rllLTgTP~~n~~ 544 (680)
...|++|-|=+-|...
T Consensus 1088 ~~garvVLVGD~~QL~s 1104 (1747)
T PRK13709 1088 AGGGRAVSSGDTDQLQA 1104 (1747)
T ss_pred cCCCEEEEecchHhcCC
Confidence 3578999998766533
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=81.18 E-value=8 Score=46.26 Aligned_cols=70 Identities=21% Similarity=0.172 Sum_probs=50.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|-|-|+++|.. ..+.+++....|+|||.+.++-+.++....... ...+|+|+-+ .....-.+.+
T Consensus 4 ~Ln~~Q~~av~~-----------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~---p~~IL~lTFTnkAA~em~~Rl 69 (715)
T TIGR01075 4 GLNDKQREAVAA-----------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENAS---PHSIMAVTFTNKAAAEMRHRI 69 (715)
T ss_pred ccCHHHHHHHcC-----------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCC---HHHeEeeeccHHHHHHHHHHH
Confidence 478899999832 235678888999999999999888887653211 2468999986 5556666667
Q ss_pred HHHhC
Q psy12466 452 KKWLG 456 (680)
Q Consensus 452 ~~~~~ 456 (680)
.+..+
T Consensus 70 ~~~~~ 74 (715)
T TIGR01075 70 GALLG 74 (715)
T ss_pred HHHhc
Confidence 66544
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=80.31 E-value=23 Score=36.56 Aligned_cols=50 Identities=22% Similarity=0.160 Sum_probs=35.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhc-CCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQ-GPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~-~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.+.-.+|+-.+|.|||..++.++...... + .+++++.-..-..+....+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g-------~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHG-------VRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC-------ceEEEEEcccCHHHHHHHHH
Confidence 34567899999999999999988877654 3 24788876544444444443
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=80.21 E-value=7.8 Score=45.94 Aligned_cols=70 Identities=24% Similarity=0.276 Sum_probs=48.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHH-H
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDE-F 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E-~ 451 (680)
.|.+-|+++|.. ..+..++....|+|||.+.++-+.++...+.. ....+|+++.+.-..+...+ +
T Consensus 196 ~L~~~Q~~av~~-----------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~---~~~~IL~ltft~~AA~em~eRL 261 (684)
T PRK11054 196 PLNPSQARAVVN-----------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQA---QPEQILLLAFGRQAAEEMDERI 261 (684)
T ss_pred CCCHHHHHHHhC-----------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC---CHHHeEEEeccHHHHHHHHHHH
Confidence 488899999842 12345666779999999999998888765421 12469999998666555444 6
Q ss_pred HHHhC
Q psy12466 452 KKWLG 456 (680)
Q Consensus 452 ~~~~~ 456 (680)
...++
T Consensus 262 ~~~lg 266 (684)
T PRK11054 262 RERLG 266 (684)
T ss_pred HHhcC
Confidence 65544
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.16 E-value=16 Score=39.15 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=34.6
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
++|.|...-.-+.+.+.. ..-.+.-++.-+.|+||+..|.+++..+.-..
T Consensus 3 ~yPW~~~~~~~l~~~~~~--~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQ--GLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHc--CCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 467777666666554321 12234555788999999999999998887654
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=80.15 E-value=38 Score=36.21 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.++.-..|+|||..+.+++..+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHh
Confidence 35678999999999999998887665
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.01 E-value=21 Score=38.44 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=37.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
.++|+|...-+.+.+.+.. ..-.+.-++.-+.|+||+..|.+++..+.-..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~--~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~ 53 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQA--GRGHHALLIQALPGMGDDALIYALSRWLMCQQP 53 (334)
T ss_pred CCCCCChHHHHHHHHHHHc--CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 3678888888777665321 122345567899999999999999998876543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 680 | ||||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 3e-66 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 2e-27 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 5e-26 | ||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 3e-25 | ||
| 3dmq_A | 968 | Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT | 2e-06 |
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
|
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
|
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT Recycles Rna Polymerase During Transcription Length = 968 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
Score = 392 bits (1008), Expect = e-128
Identities = 137/350 (39%), Positives = 196/350 (56%), Gaps = 19/350 (5%)
Query: 347 EEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEM 406
K V V VD LS+VL+PHQR+GV FL++ V + G I+ADEM
Sbjct: 29 ISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEM 88
Query: 407 GLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN 466
GLGKTLQCI LIWTLL+Q P P I KV++V+PSSL NW +E KWLG R+ P ++
Sbjct: 89 GLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLG-GRVQPVAID 147
Query: 467 QKNKAE----------DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG 516
+K E +P+LIISYE + + + L+ICDEGHRLKN
Sbjct: 148 GGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNS 207
Query: 517 KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILES 576
++ Y + +N ++R+L+SGTP+QNDL E+F L F N G+LG+ +EF+K FE PIL+
Sbjct: 208 DNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKG 267
Query: 577 RSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSL 635
R ++++ ++ GE + +L ++RRT + L K E ++ C TPLQ+ L
Sbjct: 268 RDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLP-VKIEQVVCCNLTPLQKEL 326
Query: 636 YLRCVEYWDARA------SRDSHLSVTHALRKICNHPGLVQQPDMMEEEG 679
Y ++ S LS +L+K+CNHP L+ + + EEG
Sbjct: 327 YKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEG 376
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 3e-17
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 183 HQEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---------- 232
Q + + I +V++V+PSSL NW +E KWLG R+ P ++ +K E
Sbjct: 105 KQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLG-GRVQPVAIDGGSKDEIDSKLVNFIS 163
Query: 233 DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDE 269
+P+LIISYE + + + L+ICDE
Sbjct: 164 QQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDE 200
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 1e-56
Identities = 90/309 (29%), Positives = 147/309 (47%), Gaps = 43/309 (13%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
L+P+Q +G S++ + L G LAD+MGLGKTLQ IA+ ++
Sbjct: 37 NLRPYQIKGFSWMRF----MNKLGF-GICLADDMGLGKTLQTIAVFSDAKKENELT---- 87
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH-VNQKNKAEDYVYSRVSPVLIISYEMLI 491
L++ P S+ NW +E K+ R +H K K EDY +++ +Y +L+
Sbjct: 88 -PSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDY------DIILTTYAVLL 140
Query: 492 R--AYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
R + + E+ ++ DE +KN ++K+++ + L + RI L+GTP++N + + +
Sbjct: 141 RDTRLKEV---EWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWS 197
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
+ F NPG+LGS EF+ F PI + + E +L + FILRRT
Sbjct: 198 IMTFLNPGLLGSYSEFKSKFATPI-KKGDNMAKE-----------ELKAIISPFILRRTK 245
Query: 609 SDVQ-ASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSH-------LSVTHALR 660
D + L K ET + C TP Q ++Y VE + LS L+
Sbjct: 246 YDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLK 305
Query: 661 KICNHPGLV 669
+I +HP L+
Sbjct: 306 QIVDHPALL 314
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYH-VNQKNKAEDYVYSRVSPVLIISYEMLIR- 252
L++ P S+ NW +E K+ R +H K K EDY +++ +Y +L+R
Sbjct: 89 SLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDY------DIILTTYAVLLRD 142
Query: 253 -AYQTIVDTEFDLLICDE 269
+ + E+ ++ DE
Sbjct: 143 TRLKEV---EWKYIVIDE 157
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 2e-52
Identities = 60/323 (18%), Positives = 118/323 (36%), Gaps = 31/323 (9%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L PHQ + R +LADE+GLGKT++ ++ L G
Sbjct: 154 LIPHQLNIAHDVGRR-------HAPRVLLADEVGLGKTIEAGMILHQQLLSGA-----AE 201
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS--PVLIISYEMLI 491
+VLI+ P +L W E + L R + + +A+ Y+ ++I S +
Sbjct: 202 RVLIIVPETLQHQWLVEMLRRFNL-RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFAR 260
Query: 492 R---AYQTIVDTEFDLLICDEGHRL---KNGKSKLYELMTGL--NIRKRILLSGTPLQND 543
R + + + E+DLL+ DE H L ++ S+ Y+ + L ++ +LL+ TP Q
Sbjct: 261 RSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLG 320
Query: 544 LQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGF 603
++ F +P +F + + + + A L + L +
Sbjct: 321 MESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380
Query: 604 ILRR-----TSDVQASLLNSKRETLLVCRATPLQQSLY---LRCVEYWDARASRDSHLSV 655
+ SD + + + ++ + L+ V+ + R L +
Sbjct: 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPL 440
Query: 656 THALRKICNHPGLVQQPDMMEEE 678
+ G++ E+
Sbjct: 441 PTQYQTAIKVSGIMGARKSAEDR 463
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 8e-12
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS--P 241
++ RVLI+ P +L W E + L R + + +A+ Y+
Sbjct: 192 HQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNL-RFALFDDERYAEAQHDAYNPFDTEQ 250
Query: 242 VLIISYEMLIR---AYQTIVDTEFDLLICDE 269
++I S + R + + + E+DLL+ DE
Sbjct: 251 LVICSLDFARRSKQRLEHLCEAEWDLLVVDE 281
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 3e-52
Identities = 92/316 (29%), Positives = 140/316 (44%), Gaps = 52/316 (16%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR----QGPYGM 429
L+ Q G++++ + ILADEMGLGKT+Q +A I L+ GP+
Sbjct: 237 LRDFQLTGINWMAFLWSKGDN-----GILADEMGLGKTVQTVAFISWLIFARRQNGPH-- 289
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA---EDYVYSRVSP----- 481
+IV P S W D F+KW Y NQK++ E Y+
Sbjct: 290 ------IIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKT 343
Query: 482 ----VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSG 537
VL+ +YE +++ + ++ + DE HRLKN +S LYE + + R+L++G
Sbjct: 344 MKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITG 403
Query: 538 TPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLA 597
TPLQN+++E L +F PG +E ++ E Q E L
Sbjct: 404 TPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD-----------EEQ----EEYIHDLH 448
Query: 598 KRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCVEY------WDARASRD 650
+R FILRR DV+ SL SK E +L + +Q Y + A+
Sbjct: 449 RRIQPFILRRLKKDVEKSLP-SKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHF 507
Query: 651 SHLSVTHALRKICNHP 666
S L++ + L+K NHP
Sbjct: 508 SLLNIMNELKKASNHP 523
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA---EDYVYSRVSP---------VL 243
+IV P S W D F+KW Y NQK++ E Y+ VL
Sbjct: 290 IIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVL 349
Query: 244 IISYEMLIRAYQTIVDTEFDLLICDE 269
+ +YE +++ + ++ + DE
Sbjct: 350 LTTYEYILKDRAELGSIKWQFMAVDE 375
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 3e-11
Identities = 99/618 (16%), Positives = 183/618 (29%), Gaps = 185/618 (29%)
Query: 90 ILKDTLGKVI-DSKVK-ILDEIKPGTSS------LQSSPRLNASDNVQSSTVNAQTSSVN 141
IL + + K + D K S + S ++ + + + ++ Q V
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 142 AQTSSVSASSSLPWRPVKKSRLSLHAKTEVNPLILPKPIVDHQEKNRRSYILRVLIVTPS 201
V + + L PI E+ + S + R+ I
Sbjct: 81 KFVEEVLRIN-YKF--------------------LMSPI--KTEQRQPSMMTRMYIEQRD 117
Query: 202 SLTSNWND--EFKKWLGLTRMCPYHVN---QKNKAEDYVYS-RVSPVLIISYEML----- 250
L +ND F K Y+V+ K + R + ++I +L
Sbjct: 118 RL---YNDNQVFAK---------YNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKT 164
Query: 251 ------IRAYQTIVDTEFDLLI-------CDE-KSLLKPPSGNSPGNDSGIPSLPRKSDS 296
+Y+ V + D I C+ +++L+ + L + D
Sbjct: 165 WVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEM-----------LQKLLYQIDP 211
Query: 297 GIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL-----VQQPDVMEEEGQ 351
S + S+ L+ + I + L + N L VQ
Sbjct: 212 NWTSRS-----DHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLNVQNAKA------ 258
Query: 352 WKH-NPSGKPLVDVTVDGFLSRVLKPHQRQGVS-------FLYERVCDLAS--LDLEGAI 401
W N S K L+ T ++ L +S + V L LD
Sbjct: 259 WNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 402 LADEMGLGKTLQCIALIWTLLRQGP-----YGMPVIRKVLIVTPSSLTSNWNDEFKK--- 453
L E+ + +++I +R G + K+ + SSL E++K
Sbjct: 318 LPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 454 -------------------WLGLTRMCPYH----------VNQKNKAEDY----VYSRVS 480
W + + V ++ K +Y +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 481 PVLIISYEM---LIRAYQTIVDTEFDLLICDE---------GHRLKN-GKSKLYELMTG- 526
L Y + ++ Y + D LI GH LKN + L
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 527 -LN---IRKRILLSGTP------LQNDLQEF-FYL-----NDFANPGVLGSLREFRKNFE 570
L+ + ++I T + N LQ+ FY ND ++ ++ +F E
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 571 EPILESRSPNSTEAQKSL 588
E ++ S + + +L
Sbjct: 557 ENLI--CSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 8e-07
Identities = 49/307 (15%), Positives = 89/307 (28%), Gaps = 79/307 (25%)
Query: 395 LDLEGAILADE-----MGLGKTL-QCIALIWTLLRQGP--------------YG--MPVI 432
D+ +IL+ E + + + L WTLL + Y M I
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 433 RKVLIVTPSSLTSNWNDEFKK-WLGLTRMCPYHVN---QKNKAEDYVYS-RVSPVLIISY 487
+ PS +T + ++ + + Y+V+ K + R + ++I
Sbjct: 99 KTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-D 156
Query: 488 EML-----------IRAYQTIVDTEFDLLI-------CDEGHRLKNGKSKLYELMTG--- 526
+L +Y+ V + D I C+ + KL +
Sbjct: 157 GVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 527 ---------------LNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEE 571
+ R LL P +N L L + N F N
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNAKA---WNAF--NLSC 266
Query: 572 PIL-ESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETL--LVCRA 628
IL +R T+ + S L + + L+ + + L V
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 629 TPLQQSL 635
P + S+
Sbjct: 326 NPRRLSI 332
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 54/255 (21%), Positives = 78/255 (30%), Gaps = 69/255 (27%)
Query: 468 KNKAEDYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGH-RLKNGKSKLYELMT 525
+K E+ V V VL I+Y+ L+ +T + E RL N ++
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN----QVFA 127
Query: 526 GLNI-RKRILLSGTPLQNDLQEFFYLNDFAN---PGVLGS---------LREFR--KNFE 570
N+ R + L L+ L E L N GVLGS ++ +
Sbjct: 128 KYNVSRLQPYLK---LRQALLE---LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 571 EPIL-----ESRSPNST-EAQKSLGELRSSQLAKRTAGF--ILRRTSDVQAS---LLNSK 619
I SP + E + L R+ I R +QA LL SK
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 620 R--ETLLVCRATPLQQSLYLRCVEYWDARA-------------SRDSHLSVTHALR-KIC 663
LLV L V +A+A +R VT L
Sbjct: 242 PYENCLLV-----------LLNV--QNAKAWNAFNLSCKILLTTRFK--QVTDFLSAATT 286
Query: 664 NHPGLVQQPDMMEEE 678
H L + +
Sbjct: 287 THISLDHHSMTLTPD 301
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 24/134 (17%)
Query: 407 GLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHV 465
G GKT +A I L LIV P+ +L W + + G + +
Sbjct: 118 GSGKTHVAMAAINELST----------PTLIVVPTLALAEQWKERLGIF-GEEYVGEFSG 166
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
K + P+ + +Y+ + + + F LLI DE H L ++
Sbjct: 167 RIKE---------LKPLTVSTYDSAYVNAEKLGN-RFMLLIFDEVHHL--PAESYVQIAQ 214
Query: 526 GLNIRKRILLSGTP 539
R+ L+ T
Sbjct: 215 MSIAPFRLGLTATF 228
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 2e-09
Identities = 34/270 (12%), Positives = 86/270 (31%), Gaps = 19/270 (7%)
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLT-- 458
++ GLGKTL + + L + + +++ L + F++ L
Sbjct: 27 LIVLPTGLGKTLIAMMIAEYRLTK-----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81
Query: 459 RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNG 516
++ + + ++R + V++ + + + I + L++ DE HR
Sbjct: 82 KIVALTGEKSPEERSKAWAR-AKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGN 140
Query: 517 KS--KLYELMTGLNIRKRIL-LSGTPL--QNDLQEFFYLNDFANPGVLGSLREF-RKNFE 570
+ + ++ L+ +P + E + R +
Sbjct: 141 YAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVK 200
Query: 571 EPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATP 630
E + E K + +L L L T +++S + ++ +L
Sbjct: 201 GIRFEWVRVDLPEIYKEVRKLLREMLRDALK--PLAETGLLESSSPDIPKKEVLRAGQI- 257
Query: 631 LQQSLYLRCVEYWDARASRDSHLSVTHALR 660
+ + + + L + HA+
Sbjct: 258 INEEMAKGNHDLRGLLLYHAMALKLHHAIE 287
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 41/197 (20%)
Query: 355 NPSGKPLVDVTVDGFLSRVLK------PHQRQGVSFLYERVCDLASLDLEGAILADEMGL 408
+G VD D + +Q + + L + + G
Sbjct: 69 ESNGIEFVDNAADPIPTPYFDAEISLRDYQEKALE---------RWLVDKRGCIVLPTGS 119
Query: 409 GKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQ 467
GKT +A I L LIV P+ +L W + + + +
Sbjct: 120 GKTHVAMAAINELST----------PTLIVVPTLALAEQWKERLGIFGE-EYVGEFSGRI 168
Query: 468 KNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE-LMTG 526
K + P+ + +Y+ + + + F LLI DE H L ++ Y +
Sbjct: 169 KE---------LKPLTVSTYDSAYVNAEKLGN-RFMLLIFDEVHHL---PAESYVQIAQM 215
Query: 527 LNIRKRILLSGTPLQND 543
R+ L+ T + D
Sbjct: 216 SIAPFRLGLTATFERED 232
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 591 LRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY-------LRCVEYW 643
+ SS + ++ R S + AS L K ET + C TP Q ++Y ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHM-ASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV 59
Query: 644 DARASRDSHLSVTHALRKICNHPGLV 669
+ LS L++I +HP L+
Sbjct: 60 TGIKRKGMILSTLLKLKQIVDHPALL 85
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 680 | |||
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.95 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.84 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.78 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.78 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.7 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.7 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.69 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.67 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.67 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.67 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.67 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.66 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.66 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.66 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.63 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.62 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.61 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.6 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.56 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.56 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.55 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.54 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.53 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.52 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.52 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.51 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.51 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.5 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.49 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.47 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.47 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.46 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.45 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.44 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.43 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.42 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.41 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.4 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.4 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.39 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.37 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.33 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.32 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.32 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.31 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.3 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.3 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.29 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.28 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.25 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.24 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.18 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.17 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.17 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.17 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.17 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.15 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.15 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.14 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.11 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.04 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 98.8 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 98.77 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 98.75 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.72 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 98.59 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 98.56 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 98.54 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 98.53 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 98.52 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 98.49 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 98.47 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.46 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 98.43 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 98.43 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 98.41 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 98.39 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 98.38 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 98.36 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.33 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 98.31 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 98.31 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 98.3 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.28 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 98.27 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 98.22 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 98.2 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 98.18 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 98.15 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 98.14 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 98.13 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 98.11 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 98.09 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 98.09 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 98.08 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 98.06 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 98.06 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 98.04 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 98.04 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 98.04 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 98.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 97.92 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 97.9 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 97.9 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 97.89 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.87 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 97.82 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 97.71 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 97.68 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 97.66 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 97.58 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 97.55 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 97.53 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 97.5 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 97.49 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 97.49 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.48 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 97.47 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 97.46 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 97.45 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 97.36 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 97.28 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 97.25 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 97.23 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 97.15 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.13 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.04 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 96.99 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 96.99 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 96.95 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 96.92 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.8 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.79 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 96.74 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 96.68 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 96.65 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.6 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 96.59 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 96.43 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 96.43 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 96.38 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 96.35 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 96.24 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 96.21 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.19 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.18 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 96.14 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 96.02 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.88 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 95.77 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 95.74 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 95.62 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 95.52 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.24 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 94.71 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.6 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.59 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.49 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 94.33 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.24 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 94.01 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 93.86 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 93.84 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 93.78 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 93.6 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 93.5 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.45 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 92.92 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 92.8 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 92.73 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 92.32 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 92.25 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 92.22 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 92.18 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 92.12 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 91.66 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 91.65 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 91.64 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 91.48 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 91.43 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 91.35 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 91.32 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 90.88 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 90.86 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 90.75 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 90.66 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 90.54 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 90.34 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 89.63 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 89.48 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 89.44 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 89.4 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 89.27 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 89.26 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 88.79 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 88.21 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 88.0 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 87.58 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 87.41 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 87.04 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 86.58 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 86.44 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 86.44 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 86.21 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 86.01 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 85.81 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 85.66 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 85.36 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 85.03 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 84.93 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 84.5 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 83.48 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 83.48 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 83.28 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 82.93 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 82.63 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 81.94 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 81.6 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 81.4 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 81.39 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 80.9 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 80.89 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 80.59 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 80.43 |
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=460.25 Aligned_cols=309 Identities=42% Similarity=0.734 Sum_probs=267.3
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
.+.+||.+...|||||++|++||++++.+....++.||||||+||+|||+|+|+++..+...++...|..+++|||||.+
T Consensus 45 ~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~s 124 (644)
T 1z3i_X 45 HVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS 124 (644)
T ss_dssp CEECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH
T ss_pred eEeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHH
Confidence 35678889999999999999999987543323567899999999999999999999999888776666778899999999
Q ss_pred hHHHHHHHHHHHhCC-CCeeEeecCCcchh-h---hhhhc----CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 443 LTSNWNDEFKKWLGL-TRMCPYHVNQKNKA-E---DYVYS----RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 443 ll~qW~~E~~~~~~~-~~v~~~~~~~~~~~-~---~~~~~----~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
++.||.+||.+|++. ..+..+++...... . .+... ..++|+|+||+++......+....|++||+||||++
T Consensus 125 ll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 125 LVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceec
Confidence 999999999999975 44444444332211 1 11111 247899999999999888888899999999999999
Q ss_pred cCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHH
Q psy12466 514 KNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593 (680)
Q Consensus 514 kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~ 593 (680)
||..++.++++..+++.+||+|||||++|++.|||++++|++|+.+++...|.+.|..|+..+...+.+......+..+.
T Consensus 205 kn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 284 (644)
T 1z3i_X 205 KNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (644)
T ss_dssp CTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred CChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877888888889
Q ss_pred HHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHhccCcc
Q psy12466 594 SQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPG 667 (680)
Q Consensus 594 ~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------~~~~~l~~l~~LRqicnHP~ 667 (680)
..|+.++.||++||+++++...||++.+.+++|+||+.|+++|+.+++...... .....+..+++|||+||||.
T Consensus 285 ~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 285 QELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999999999999999987764332 23467899999999999999
Q ss_pred ccCC
Q psy12466 668 LVQQ 671 (680)
Q Consensus 668 L~~~ 671 (680)
|+..
T Consensus 365 l~~~ 368 (644)
T 1z3i_X 365 LIYE 368 (644)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9853
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=424.80 Aligned_cols=280 Identities=30% Similarity=0.402 Sum_probs=231.6
Q ss_pred ccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHH
Q psy12466 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWN 448 (680)
Q Consensus 369 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~ 448 (680)
....+|||||++||+||+.. ...++||||||+||+|||+|+|+++..+...... .+|+|||||.+++.||.
T Consensus 232 ~~~~~Lr~yQ~egv~~l~~~-----~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~----~~~~LIV~P~sll~qW~ 302 (800)
T 3mwy_W 232 IKGGELRDFQLTGINWMAFL-----WSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ----NGPHIIVVPLSTMPAWL 302 (800)
T ss_dssp CCSSCCCTHHHHHHHHHHHH-----HTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC----CSCEEEECCTTTHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHH-----hhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC----CCCEEEEECchHHHHHH
Confidence 34679999999999999864 3457899999999999999999999887654332 35699999999999999
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhh------------hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDY------------VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~------------~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~ 516 (680)
+||.+|+|...+.++++....+.... .....++|+|+||+++.+....+....|++||+||||++||.
T Consensus 303 ~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 303 DTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCS
T ss_pred HHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCc
Confidence 99999999999999998876543211 123467899999999999988899999999999999999999
Q ss_pred ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHH
Q psy12466 517 KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQL 596 (680)
Q Consensus 517 ~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L 596 (680)
.++.++++..+++.+||+|||||++|++.|||++++||.|+.|+....|...... .........|
T Consensus 383 ~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---------------~~~~~~~~~L 447 (800)
T 3mwy_W 383 ESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---------------EEQEEYIHDL 447 (800)
T ss_dssp SSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---------------THHHHHHHHH
T ss_pred hhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccc---------------hhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876665321111 1123456789
Q ss_pred HHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHhccCccccC
Q psy12466 597 AKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPGLVQ 670 (680)
Q Consensus 597 ~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------~~~~~l~~l~~LRqicnHP~L~~ 670 (680)
+.+++||++||++.++...||++.+.+++|+||+.|+++|+.++......+ .....++.+++||++||||+|+.
T Consensus 448 ~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~ 527 (800)
T 3mwy_W 448 HRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFD 527 (800)
T ss_dssp HHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSS
T ss_pred HHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhc
Confidence 999999999999999999999999999999999999999999887543222 34568999999999999999986
Q ss_pred CC
Q psy12466 671 QP 672 (680)
Q Consensus 671 ~~ 672 (680)
..
T Consensus 528 ~~ 529 (800)
T 3mwy_W 528 NA 529 (800)
T ss_dssp SH
T ss_pred ch
Confidence 54
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=389.67 Aligned_cols=278 Identities=29% Similarity=0.489 Sum_probs=239.5
Q ss_pred CcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHH
Q psy12466 367 DGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSN 446 (680)
Q Consensus 367 p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~q 446 (680)
|..+...|+|||++|+.||.... ..+.||||||+||+|||+++++++..+...+. .+++|||||.+++.|
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~-----~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-----~~~~LIv~P~~l~~q 100 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMN-----KLGFGICLADDMGLGKTLQTIAVFSDAKKENE-----LTPSLVICPLSVLKN 100 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHH-----HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-----CSSEEEEECSTTHHH
T ss_pred ChhhhccchHHHHHHHHHHHHHh-----hCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-----CCCEEEEccHHHHHH
Confidence 66788999999999999997642 34579999999999999999999998876553 356999999999999
Q ss_pred HHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHh
Q psy12466 447 WNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG 526 (680)
Q Consensus 447 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~ 526 (680)
|.+|+.+|+|..++.++++.... .....++|+|+||+++.+... +....|++||+||||+++|..++.++++..
T Consensus 101 w~~e~~~~~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~ 174 (500)
T 1z63_A 101 WEEELSKFAPHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKE 174 (500)
T ss_dssp HHHHHHHHCTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHT
T ss_pred HHHHHHHHCCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHh
Confidence 99999999999988888776532 122357899999999987654 667789999999999999999999999999
Q ss_pred cccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceee
Q psy12466 527 LNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606 (680)
Q Consensus 527 l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lR 606 (680)
+.+.++|+|||||++|++.|+|++++|++|+.+++...|.+.|..|+..+. ......|+.++.||++|
T Consensus 175 l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~------------~~~~~~l~~~l~~~~lr 242 (500)
T 1z63_A 175 LKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD------------NMAKEELKAIISPFILR 242 (500)
T ss_dssp SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC------------HHHHHHHHHHHTTTEEC
T ss_pred hccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc------------HHHHHHHHHHHhhHeee
Confidence 999999999999999999999999999999999999999999999886531 23456799999999999
Q ss_pred echhH--HhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHhccCccccCCC
Q psy12466 607 RTSDV--QASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA-------SRDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 607 rtk~~--v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-------~~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
|++.+ +...||++.+.+++|+|++.|+++|+.+.+...... +.+..+..+++||++|+||.++...
T Consensus 243 r~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 243 RTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 317 (500)
T ss_dssp CCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred ecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCc
Confidence 99864 667899999999999999999999999887654433 3345788899999999999987643
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=292.38 Aligned_cols=255 Identities=20% Similarity=0.297 Sum_probs=188.4
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDE 450 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E 450 (680)
...|+|||.+++.|++.. .+.++||||+||+|||+++++++..+...+. .+++|||||.+++.||.+|
T Consensus 151 ~~~LrpyQ~eav~~~l~~-------~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----~~rvLIVvP~sLl~Qw~~E 218 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRR-------HAPRVLLADEVGLGKTIEAGMILHQQLLSGA-----AERVLIIVPETLQHQWLVE 218 (968)
T ss_dssp SSCCCHHHHHHHHHHHHS-------SSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----CCCEEEECCTTTHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHh-------cCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-----CCeEEEEeCHHHHHHHHHH
Confidence 356999999999999763 3578999999999999999999998887664 3569999999999999999
Q ss_pred HHHHhCCCCeeEeecCCcchhhh--hhhcCCCCEEEEeHHHHHHHH---HhhhccCceEEEEcCcccccCcccH---HHH
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAY---QTIVDTEFDLLICDEGHRLKNGKSK---LYE 522 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~vvI~ty~~l~~~~---~~l~~~~~~~vIlDEaH~~kn~~s~---~~~ 522 (680)
|.++++ ..+.++++........ ......++|+|+||+.+.+.. ..+....|++||+||||+++|..+. .++
T Consensus 219 ~~~~f~-l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 219 MLRRFN-LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HHHHSC-CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred HHHHhC-CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 988884 5666666543222111 122245789999999997642 3456678999999999999987654 477
Q ss_pred HHHhc--ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhh---------ccCCCCChHH-------
Q psy12466 523 LMTGL--NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPIL---------ESRSPNSTEA------- 584 (680)
Q Consensus 523 ~l~~l--~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~---------~~~~~~~~~~------- 584 (680)
++..+ +++++|+|||||++|++.|+|++++|+.|+.+++...|...+..... .+........
T Consensus 298 ~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l 377 (968)
T 3dmq_A 298 AIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMI 377 (968)
T ss_dssp HHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTT
T ss_pred HHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 88877 67889999999999999999999999999999999999877543110 0000000000
Q ss_pred ---------------HHHhhhhHHHHHHHHh-----ccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHH
Q psy12466 585 ---------------QKSLGELRSSQLAKRT-----AGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRC 639 (680)
Q Consensus 585 ---------------~~~~~~~~~~~L~~~l-----~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l 639 (680)
...........+..++ ...++|+++..+. .+|.+....+.+++++.++.+|+..
T Consensus 378 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~ 451 (968)
T 3dmq_A 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVS 451 (968)
T ss_dssp CTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHH
T ss_pred cchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHH
Confidence 0000011122333333 3467777777764 7999999999999999999999753
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=203.48 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=128.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+|+|||.+++.++++ +++||+++||+|||+++++++....... .+++|||||. +|+.||.++
T Consensus 8 ~~l~~~Q~~~i~~~~~----------~~~ll~~~tG~GKT~~~~~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~ 71 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----------TNCLIVLPTGLGKTLIAMMIAEYRLTKY------GGKVLMLAPTKPLVLQHAES 71 (494)
T ss_dssp HCCCHHHHHHHHHGGG----------SCEEEECCTTSCHHHHHHHHHHHHHHHS------CSCEEEECSSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh----------CCEEEEcCCCCCHHHHHHHHHHHHHhcC------CCeEEEEECCHHHHHHHHHH
Confidence 4699999999999853 1899999999999999999887766521 2469999997 899999999
Q ss_pred HHHHh--CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccCcccHHH--HHH
Q psy12466 451 FKKWL--GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNGKSKLY--ELM 524 (680)
Q Consensus 451 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn~~s~~~--~~l 524 (680)
+.+|+ +...+..+++........ ......+|+|+||+.+..... .+...+|++||+||||++++..+... +.+
T Consensus 72 ~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~ 150 (494)
T 1wp9_A 72 FRRLFNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150 (494)
T ss_dssp HHHHBCSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHHhCcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHH
Confidence 99998 445777777765543221 112357899999999988665 34456799999999999986432221 112
Q ss_pred H-hcccceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 525 T-GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 525 ~-~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
. .....++++|||||. ++..+++.++.++....
T Consensus 151 ~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~ 184 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEH 184 (494)
T ss_dssp HHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCE
T ss_pred HhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChhe
Confidence 1 225678999999999 77888888888886553
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=194.68 Aligned_cols=194 Identities=19% Similarity=0.223 Sum_probs=148.7
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|||.+++.++++ +++++|+++||+|||++++.++... + +++|||||. +|+.||.+
T Consensus 91 ~~~l~~~Q~~ai~~i~~---------~~~~ll~~~TGsGKT~~~l~~i~~~---~-------~~~Lvl~P~~~L~~Q~~~ 151 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV---------DKRGCIVLPTGSGKTHVAMAAINEL---S-------TPTLIVVPTLALAEQWKE 151 (472)
T ss_dssp CCCBCHHHHHHHHHHTT---------TTEEEEECCTTSCHHHHHHHHHHHH---C-------SCEEEEESSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh---------cCCEEEEeCCCCCHHHHHHHHHHHc---C-------CCEEEEECCHHHHHHHHH
Confidence 35799999999998753 2569999999999999998888765 1 259999998 89999999
Q ss_pred HHHHHhCCCC-eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcc
Q psy12466 450 EFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528 (680)
Q Consensus 450 E~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~ 528 (680)
+|.+| + .. +.++++.... ..+|+|+||+.+......+. .+|++||+||||++.+.... +.+..+.
T Consensus 152 ~~~~~-~-~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~ 217 (472)
T 2fwr_A 152 RLGIF-G-EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSI 217 (472)
T ss_dssp HGGGG-C-GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCC
T ss_pred HHHhC-C-CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcC
Confidence 99994 4 44 7776665432 46899999999987666543 46999999999999876544 3566668
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeec
Q psy12466 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608 (680)
Q Consensus 529 ~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrt 608 (680)
+.++++|||||.+++-.+ ..|..++.+.+.++.
T Consensus 218 ~~~~l~lSATp~~~~~~~-----------------------------------------------~~l~~~~~~~~~~~~ 250 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRH-----------------------------------------------EILKEVVGGKVFELF 250 (472)
T ss_dssp CSEEEEEESCCCCTTSGG-----------------------------------------------GSHHHHTCCEEEECC
T ss_pred CCeEEEEecCccCCCCHH-----------------------------------------------HHHHHHhCCeEeecC
Confidence 889999999999754111 124455667777777
Q ss_pred hhHHhh-cCCCcEEEEEEecCCHHHHHHHHHHHHHHH
Q psy12466 609 SDVQAS-LLNSKRETLLVCRATPLQQSLYLRCVEYWD 644 (680)
Q Consensus 609 k~~v~~-~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~ 644 (680)
..++.. .+++.....+.+++++.++..|+.+.....
T Consensus 251 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (472)
T 2fwr_A 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYK 287 (472)
T ss_dssp HHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHH
T ss_pred HHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 666643 377778888999999999999987765543
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=182.15 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=120.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+|+|||.+++.+++.. ++++|+++||+|||+++++++......+. +++|||||. .|+.||.++
T Consensus 112 ~~l~~~Q~~ai~~~l~~---------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------~~~lil~Pt~~L~~q~~~~ 176 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN---------RRRILNLPTSAGRSLIQALLARYYLENYE------GKILIIVPTTALTTQMADD 176 (282)
T ss_dssp CCCCHHHHHHHHHHHHH---------SEEEECCCTTSCHHHHHHHHHHHHHHHCS------SEEEEECSSHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc---------CCeEEEcCCCCCcHHHHHHHHHHHHHcCC------CeEEEEECCHHHHHHHHHH
Confidence 36999999999988752 56899999999999999888776655432 369999997 788999999
Q ss_pred HHHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-
Q psy12466 451 FKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL- 527 (680)
Q Consensus 451 ~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l- 527 (680)
+.+|.... .+..+.+...... ......+|+|+||+.+.+.... .-..+++||+||||++.+. .....+..+
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~vIiDEaH~~~~~--~~~~il~~~~ 250 (282)
T 1rif_A 177 FVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLN 250 (282)
T ss_dssp HHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHTTTCT
T ss_pred HHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhHHH-HHhhCCEEEEECCccCCcc--cHHHHHHHhh
Confidence 99996542 3333333322211 2224678999999988654332 2246899999999999753 444455666
Q ss_pred ccceEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy12466 528 NIRKRILLSGTPLQNDLQEFFYLNDFANP 556 (680)
Q Consensus 528 ~~~~rllLTgTP~~n~~~el~sll~fl~p 556 (680)
...++++|||||. |...+++.++.+++|
T Consensus 251 ~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 251 NCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp TCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred cCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 6788999999996 445788888888765
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-17 Score=182.18 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=122.0
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+|+|||.+++.++++. .+++|+++||+|||.+++.++......+. +++|||||. .|..||.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~---------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------~~vlvl~P~~~L~~Q~~~ 175 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN---------RRRILNLPTSAGRSLIQALLARYYLENYE------GKILIIVPTTALTTQMAD 175 (510)
T ss_dssp EECCCHHHHHHHHHHHHH---------SEEEEECCSTTTHHHHHHHHHHHHHHHCS------SEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHHhCCC------CeEEEEECcHHHHHHHHH
Confidence 347999999999998752 67999999999999999887776665432 379999997 78899999
Q ss_pred HHHHH--hCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc
Q psy12466 450 EFKKW--LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL 527 (680)
Q Consensus 450 E~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l 527 (680)
+|.+| ++...+..+.+....... .....+|+|+||+.+.+... ..-..|++||+||||++.+ ....+.+..+
T Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~~~-~~~~~~~liIiDE~H~~~~--~~~~~il~~~ 249 (510)
T 2oca_A 176 DFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPK-EWFSQFGMMMNDECHLATG--KSISSIISGL 249 (510)
T ss_dssp HHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTSCG-GGGGGEEEEEEETGGGCCH--HHHHHHGGGC
T ss_pred HHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhchh-hhhhcCCEEEEECCcCCCc--ccHHHHHHhc
Confidence 99998 444456655554433222 23568999999998765422 2224689999999999976 2334444666
Q ss_pred -ccceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 528 -NIRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 528 -~~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
...++++||||| .+...+++++..+.++..
T Consensus 250 ~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~ 280 (510)
T 2oca_A 250 NNCMFKFGLSGSL-RDGKANIMQYVGMFGEIF 280 (510)
T ss_dssp TTCCEEEEEESCG-GGCSSCHHHHHHHHCSEE
T ss_pred ccCcEEEEEEeCC-CCCcccHHHhHHhhCCeE
Confidence 667899999999 555566677766665543
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=161.91 Aligned_cols=142 Identities=22% Similarity=0.263 Sum_probs=107.3
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|||.+++..+++ +..+++++++|+|||.++++++... + +++|||||. .++.||.+
T Consensus 91 ~~~l~~~Q~~ai~~~~~---------~~~~ll~~~tG~GKT~~a~~~~~~~---~-------~~~liv~P~~~L~~q~~~ 151 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV---------DKRGCIVLPTGSGKTHVAMAAINEL---S-------TPTLIVVPTLALAEQWKE 151 (237)
T ss_dssp CCCCCHHHHHHHHHHTT---------TSEEEEEESSSTTHHHHHHHHHHHS---C-------SCEEEEESSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh---------CCCEEEEeCCCCCHHHHHHHHHHHc---C-------CCEEEEeCCHHHHHHHHH
Confidence 45799999999987643 2459999999999999998887653 1 359999998 88899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~ 529 (680)
++.+ ++...+..+.+... ...+|+|+||+.+......+. ..|++||+||||++.+.. ..+.+..+..
T Consensus 152 ~~~~-~~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~ 218 (237)
T 2fz4_A 152 RLGI-FGEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIA 218 (237)
T ss_dssp HHGG-GCGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCC
T ss_pred HHHh-CCCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccC
Confidence 9999 44322666655442 246899999999987666543 469999999999997643 3345566688
Q ss_pred ceEEEEeCCCCCCCH
Q psy12466 530 RKRILLSGTPLQNDL 544 (680)
Q Consensus 530 ~~rllLTgTP~~n~~ 544 (680)
.++++|||||.+++-
T Consensus 219 ~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 219 PFRLGLTATFEREDG 233 (237)
T ss_dssp SEEEEEEESCC----
T ss_pred CEEEEEecCCCCCCC
Confidence 899999999998754
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=179.35 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=117.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+|+|||.+++.++++ ++++|+++++|+|||++++..+.......+. ...+++|||||. .|+.||.+++
T Consensus 4 ~~~~~Q~~~i~~~~~---------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~ 72 (555)
T 3tbk_A 4 KPRNYQLELALPAKK---------GKNTIICAPTGCGKTFVSLLICEHHLKKFPC--GQKGKVVFFANQIPVYEQQATVF 72 (555)
T ss_dssp CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhC---------CCCEEEEeCCCChHHHHHHHHHHHHHHhccc--CCCCEEEEEeCCHHHHHHHHHHH
Confidence 589999999998853 3689999999999999988887766655431 113469999998 8999999999
Q ss_pred HHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHHHh
Q psy12466 452 KKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELMTG 526 (680)
Q Consensus 452 ~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l~~ 526 (680)
.++++ ..++..+++...............+|+|+|++.+...... + .-..|++||+||||++.+... ....+..
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~ 151 (555)
T 3tbk_A 73 SRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFR 151 (555)
T ss_dssp HHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHH
T ss_pred HHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHH
Confidence 99986 5567777766543332222223578999999999876654 2 234689999999999987653 2222222
Q ss_pred c----------ccceEEEEeCCCCCCCH
Q psy12466 527 L----------NIRKRILLSGTPLQNDL 544 (680)
Q Consensus 527 l----------~~~~rllLTgTP~~n~~ 544 (680)
+ ...++++|||||..++.
T Consensus 152 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~ 179 (555)
T 3tbk_A 152 YLDHKLGESRDPLPQVVGLTASVGVGDA 179 (555)
T ss_dssp HHHHHTSSCCSCCCEEEEEESCCCCTTC
T ss_pred HHHhhhccccCCCCeEEEEecCcccCcc
Confidence 2 22478999999998873
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=177.73 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=114.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+|+|||.+++.+++. +.++|+++++|+|||++++..+.......+.+ ...++|||||. .|+.||.++
T Consensus 6 ~~~~~~Q~~~i~~~~~---------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~ 74 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN---------GKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQKNV 74 (556)
T ss_dssp --CCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSS--CCCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEcCCCChHHHHHHHHHHHHHHhCccc--CCCeEEEEeCCHHHHHHHHHH
Confidence 3689999999998853 36799999999999999888777666554321 13469999998 899999999
Q ss_pred HHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 451 FKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 451 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
+.++++ ..++..+++...............+|+|+|++.+...... + .-..|++||+||||++.+... ....+.
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~ 153 (556)
T 4a2p_A 75 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMT 153 (556)
T ss_dssp HHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHH
T ss_pred HHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHH
Confidence 999987 5667777666543332222223578999999999876654 2 234689999999999987654 222222
Q ss_pred hc---------ccceEEEEeCCCCCCCH
Q psy12466 526 GL---------NIRKRILLSGTPLQNDL 544 (680)
Q Consensus 526 ~l---------~~~~rllLTgTP~~n~~ 544 (680)
.+ ...++++|||||..++.
T Consensus 154 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~ 181 (556)
T 4a2p_A 154 RYLEQKFNSASQLPQILGLTASVGVGNA 181 (556)
T ss_dssp HHHHHHHCC---CCEEEEEESCCCCTTC
T ss_pred HHHHhhhcccCCCCeEEEEeCCcccCch
Confidence 22 23578999999988764
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-17 Score=192.24 Aligned_cols=109 Identities=29% Similarity=0.454 Sum_probs=87.4
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCC-CCeeEEeecCCcchh----hhcc----cCCCCEEEEehhHHHHHHHhhhcCC
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGL-TRMCPYHVNQKNKAE----DYVY----SRVSPVLIISYEMLIRAYQTIVDTE 261 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~-~~~~~~~~~~~~~~~----~~~~----~~~~~V~itsYe~l~~~~~~l~~~~ 261 (680)
.++++|||||.+++.||.+||.+|++. ..+..++++...... .+.. ...++|+||||++++.....+....
T Consensus 113 ~~~~~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~ 192 (644)
T 1z3i_X 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGK 192 (644)
T ss_dssp SCSCEEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSC
T ss_pred CCCcEEEEecHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCC
Confidence 467899999999999999999999974 223333333221111 1111 1247899999999999988898999
Q ss_pred CcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 262 FDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|++||+||||+|||+.++.++++..+.+.+||+|||+.
T Consensus 193 ~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTP 230 (644)
T 1z3i_X 193 VGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTP 230 (644)
T ss_dssp CCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSC
T ss_pred ccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCc
Confidence 99999999999999999999999999999999999864
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-17 Score=184.85 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=104.7
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCC--CCCccceEEEEec-cchHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPY--GMPVIRKVLIVTP-SSLTSNW 447 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~--~~~~~~~~LIV~P-~sll~qW 447 (680)
...|||||.+|+.++++.+. .+.++++|+++||+|||++++.++..+...+.. .....+++||||| ..|+.||
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~----~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~ 251 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVL----QGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDP 251 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHH----TTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC--------
T ss_pred CCCchHHHHHHHHHHHHHHh----cCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHH
Confidence 35799999999999987542 244678999999999999999999888765410 1112457999999 5888999
Q ss_pred H-HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH------hhhccCceEEEEcCcccccCcc-cH
Q psy12466 448 N-DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ------TIVDTEFDLLICDEGHRLKNGK-SK 519 (680)
Q Consensus 448 ~-~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~------~l~~~~~~~vIlDEaH~~kn~~-s~ 519 (680)
. +++..|.+. +..+.+. ......+|+|+||+.+..... .+....|++||+||||++.+.. +.
T Consensus 252 ~~~~~~~~~~~--~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~ 321 (590)
T 3h1t_A 252 KDKTFTPFGDA--RHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSN 321 (590)
T ss_dssp ---CCTTTCSS--EEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHHHhcchh--hhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHH
Confidence 9 788876542 2222111 122457899999999977532 2334569999999999997653 33
Q ss_pred HHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 520 LYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 520 ~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
....+..+...++++|||||..+...+++.++
T Consensus 322 ~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f 353 (590)
T 3h1t_A 322 WREILEYFEPAFQIGMTATPLREDNRDTYRYF 353 (590)
T ss_dssp CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHS
T ss_pred HHHHHHhCCcceEEEeccccccccchhHHHHc
Confidence 34455566778899999999999888877665
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=184.66 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=117.3
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|||.+++.+++. ++++|++++||+|||++++..+.......+.+ ..+++|||||. .|+.||.+
T Consensus 246 ~~~l~~~Q~~~i~~~l~---------~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~--~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN---------GKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp --CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSS--CCCCEEEECSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh---------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--CCCeEEEEeCCHHHHHHHHH
Confidence 56899999999998853 36899999999999999888877766654311 13469999996 68999999
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHH
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
++.++++ ..++..+++...............+|+|+|++.+...... + .-..|++||+||||++.+... ....+
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~ 393 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLM 393 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHH
Confidence 9999997 6677777776644433223334689999999999876643 1 223579999999999987654 22222
Q ss_pred Hhc---------ccceEEEEeCCCCCCCHHH
Q psy12466 525 TGL---------NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 525 ~~l---------~~~~rllLTgTP~~n~~~e 546 (680)
..+ ...++++|||||.+++..+
T Consensus 394 ~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~ 424 (797)
T 4a2q_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKN 424 (797)
T ss_dssp HHHHHHHHTTCCCCCEEEEEESCCCCTTCCS
T ss_pred HHHHHHhhccCCCCCeEEEEcCCcccccccc
Confidence 222 2256899999998865433
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-16 Score=180.41 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=121.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|+|||.+++.++++ ++++|++++||+|||++++..+......++.+ ..+++|||+|. .|+.||.++
T Consensus 12 ~~lr~~Q~~~i~~~l~---------g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~--~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK---------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp -CCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT--CCCCEEEECSSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHc---------CCCEEEEcCCCchHHHHHHHHHHHHHHhCccC--CCCeEEEEECCHHHHHHHHHH
Confidence 4699999999999863 47899999999999999988877655544321 12469999997 899999999
Q ss_pred HHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 451 FKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 451 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
+.++++ +.++..+.|...............+|+|+|++.+...... + .-..|++||+||||++.+...- ...+.
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~-~~i~~ 159 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY-NMIMF 159 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH-HHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH-HHHHH
Confidence 999987 5666667665543322222223589999999999887653 2 2346899999999999876532 22221
Q ss_pred -hc---------ccceEEEEeCCCCCCC-------HHHHHHHHhhhC
Q psy12466 526 -GL---------NIRKRILLSGTPLQND-------LQEFFYLNDFAN 555 (680)
Q Consensus 526 -~l---------~~~~rllLTgTP~~n~-------~~el~sll~fl~ 555 (680)
.+ ...++++|||||..++ ..+++.++..++
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~ 206 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLD 206 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcC
Confidence 11 3467899999998554 344555554443
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-17 Score=192.84 Aligned_cols=109 Identities=21% Similarity=0.239 Sum_probs=94.6
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhh------------cccCCCCEEEEehhHHHHHHHhhh
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY------------VYSRVSPVLIISYEMLIRAYQTIV 258 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~V~itsYe~l~~~~~~l~ 258 (680)
..+++|||||.+|+.||.+||.+|+|..++.+++|....+.... .....++|+||||+++.+....+.
T Consensus 285 ~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~ 364 (800)
T 3mwy_W 285 QNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG 364 (800)
T ss_dssp CCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH
T ss_pred CCCCEEEEECchHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHh
Confidence 35679999999999999999999999888888888765432210 123457899999999999999999
Q ss_pred cCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
...|++||+||||++||+.++.++++..+.+.+|++|||+.
T Consensus 365 ~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTP 405 (800)
T 3mwy_W 365 SIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTP 405 (800)
T ss_dssp TSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCC
T ss_pred cCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCc
Confidence 99999999999999999999999999999999999999874
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=182.76 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=120.0
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|||.+++.++++ +.++|++++||+|||++++..+.......+.+ ..+++|||||. .|+.||.+
T Consensus 246 ~~~~r~~Q~~ai~~il~---------g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~--~~~~vLvl~Pt~~L~~Q~~~ 314 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN---------GKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQKN 314 (936)
T ss_dssp --CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSS--CCCCEEEECSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc---------CCCEEEEeCCCchHHHHHHHHHHHHHHhcccc--CCCeEEEEeCCHHHHHHHHH
Confidence 56799999999999853 36899999999999999888776655443211 13469999997 68999999
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHH
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
++.++++ ..++..++|...............+|+|+|++.+...... + .-..|++||+||||++.+... ....+
T Consensus 315 ~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~ 393 (936)
T 4a2w_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLM 393 (936)
T ss_dssp HHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHH
T ss_pred HHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHH
Confidence 9999987 5677777776544332222223578999999999876653 1 223589999999999987654 33333
Q ss_pred Hhc---------ccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 525 TGL---------NIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 525 ~~l---------~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
..+ ...++++|||||.+++..++...++
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~ 430 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIE 430 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHH
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHH
Confidence 222 1257899999999887766554443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-16 Score=178.75 Aligned_cols=103 Identities=19% Similarity=0.369 Sum_probs=88.3
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
..+++|||||.+|+.||.+||++|+|..++.++++.... .....++|+|+||+++.+... +....|++||+|||
T Consensus 85 ~~~~~LIv~P~~l~~qw~~e~~~~~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEa 158 (500)
T 1z63_A 85 ELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEA 158 (500)
T ss_dssp CCSSEEEEECSTTHHHHHHHHHHHCTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETG
T ss_pred CCCCEEEEccHHHHHHHHHHHHHHCCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCc
Confidence 357899999999999999999999988888777765422 122457899999999977655 67789999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|++||+.++.++++..+.+.+|++|||+.
T Consensus 159 H~~kn~~~~~~~~l~~l~~~~~l~LTaTP 187 (500)
T 1z63_A 159 QNIKNPQTKIFKAVKELKSKYRIALTGTP 187 (500)
T ss_dssp GGGSCTTSHHHHHHHTSCEEEEEEECSSC
T ss_pred cccCCHhHHHHHHHHhhccCcEEEEecCC
Confidence 99999999999999999999999999864
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-16 Score=180.31 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=119.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHH-HH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNW-ND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW-~~ 449 (680)
-+|+|||.+++.++++ +.++|++++||+|||++++..+..+...+.. ....+++|||||. .|+.|| .+
T Consensus 6 ~~l~~~Q~~~i~~il~---------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~vlvl~P~~~L~~Q~~~~ 75 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE---------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-ASEPGKVIVLVNKVLLVEQLFRK 75 (699)
T ss_dssp -CCCHHHHHHHHHHHS---------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-HTCCCCBCCEESCSHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHh---------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-cCCCCeEEEEECCHHHHHHHHHH
Confidence 3599999999999864 4679999999999999998877665443210 0011458999997 688999 99
Q ss_pred HHHHHhCC-CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--------hhhccCceEEEEcCcccccCcc---
Q psy12466 450 EFKKWLGL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--------TIVDTEFDLLICDEGHRLKNGK--- 517 (680)
Q Consensus 450 E~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--------~l~~~~~~~vIlDEaH~~kn~~--- 517 (680)
++.++++. .++..+++...............+|+|+|++.+..... .+....|++||+||||++....
T Consensus 76 ~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~ 155 (699)
T 4gl2_A 76 EFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 155 (699)
T ss_dssp THHHHHTTTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSC
T ss_pred HHHHHcCcCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHH
Confidence 99999987 77888877665443322333568999999999986542 2334579999999999985432
Q ss_pred cHHHHHHHh-c-------------ccceEEEEeCCCCCCC-------HHHHHHHHhhhCC
Q psy12466 518 SKLYELMTG-L-------------NIRKRILLSGTPLQND-------LQEFFYLNDFANP 556 (680)
Q Consensus 518 s~~~~~l~~-l-------------~~~~rllLTgTP~~n~-------~~el~sll~fl~p 556 (680)
......+.. + ....+++|||||..++ ..++..++..+++
T Consensus 156 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 156 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp SHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC
Confidence 111111211 1 3457899999999863 3445555566665
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=144.90 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=114.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+.+ ++.+++..++|+|||++++..+......... .....++||+||. .+..||.+++
T Consensus 23 ~~~~~Q~~~i~~~~~---------~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-~~~~~~~lil~P~~~L~~q~~~~~ 92 (207)
T 2gxq_A 23 TPTPIQAAALPLALE---------GKDLIGQARTGTGKTLAFALPIAERLAPSQE-RGRKPRALVLTPTRELALQVASEL 92 (207)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-TTCCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcC---------CCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCcEEEEECCHHHHHHHHHHH
Confidence 589999999988754 3679999999999999866555444322110 1113469999998 8889999999
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHHHhc
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELMTGL 527 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~~l 527 (680)
.++++..++..+.+...............+|+|+|++.+...... +.-..+++||+||||++.+. .......+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~ 172 (207)
T 2gxq_A 93 TAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSAT 172 (207)
T ss_dssp HHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhC
Confidence 999988777777766554333222334689999999998776543 22346899999999987443 23333344444
Q ss_pred c-cceEEEEeCCCCCCCHHHH
Q psy12466 528 N-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 528 ~-~~~rllLTgTP~~n~~~el 547 (680)
. ....+++|||+- +...++
T Consensus 173 ~~~~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 173 PPSRQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp CTTSEEEEECSSCC-HHHHHH
T ss_pred CccCeEEEEEEecC-HHHHHH
Confidence 3 456799999984 334444
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=147.33 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=90.9
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHH-HH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSN-WN 448 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~q-W~ 448 (680)
...|+|||.+++..+++ +.++++..++|+|||++++..+......... .....++|||||. .++.| |.
T Consensus 31 ~~~l~~~Q~~~i~~~~~---------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~ 100 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE---------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-ASEPGKVIVLVNKVLLVEQLFR 100 (216)
T ss_dssp CCCCCHHHHHHHHHHHT---------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-TTCCCCEEEEESSHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhc---------CCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-ccCCCcEEEEECHHHHHHHHHH
Confidence 34699999999998753 3679999999999999998877655432110 0012469999998 67788 99
Q ss_pred HHHHHHhCC-CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--------hhccCceEEEEcCcccccC
Q psy12466 449 DEFKKWLGL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--------IVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 449 ~E~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--------l~~~~~~~vIlDEaH~~kn 515 (680)
+++.+|.+. ..+..+.+...............+|+|+||+.+...... +.-..+++||+||||++..
T Consensus 101 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 101 KEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HTHHHHHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred HHHHHHhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 999999864 455555554433221111123578999999999876654 2235789999999999854
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=142.81 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=110.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++..+++ ++.+++..++|+|||++++..+...............++|||||. .+..||.++
T Consensus 46 ~~~~~~Q~~~i~~~~~---------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 116 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ---------GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV 116 (236)
T ss_dssp CBCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHH
Confidence 3589999999988753 367999999999999987654443322211111112469999998 888999999
Q ss_pred HHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCc--ccHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNG--KSKLYEL 523 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~--~s~~~~~ 523 (680)
+.++... ..+..+.+........ ......+|+|+|++.+....... .-..+++||+||||++.+. .......
T Consensus 117 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 195 (236)
T 2pl3_A 117 LRKVGKNHDFSAGLIIGGKDLKHEA-ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAV 195 (236)
T ss_dssp HHHHTTTSSCCEEEECCC--CHHHH-HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHH
T ss_pred HHHHhCCCCeeEEEEECCCCHHHHH-HhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHH
Confidence 9999865 4555555544332221 12246899999999997765442 2346899999999988543 3344444
Q ss_pred HHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 524 MTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
+..+. ...++++|||+- +.+.++
T Consensus 196 ~~~~~~~~~~l~~SAT~~-~~~~~~ 219 (236)
T 2pl3_A 196 IENLPKKRQTLLFSATQT-KSVKDL 219 (236)
T ss_dssp HHTSCTTSEEEEEESSCC-HHHHHH
T ss_pred HHhCCCCCeEEEEEeeCC-HHHHHH
Confidence 55554 445799999974 334443
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-14 Score=141.37 Aligned_cols=161 Identities=11% Similarity=0.125 Sum_probs=110.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++.+++..++|+|||+.++..+........ ...++|||||. .+..||.+++
T Consensus 36 ~~~~~Q~~~i~~~~~---------~~~~li~~~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~ 102 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL---------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQISKEY 102 (220)
T ss_dssp CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCCchhhhhhHHHHHhhhccC----CCEEEEEEeCCHHHHHHHHHHH
Confidence 489999999988754 367999999999999988766655443321 12369999997 8889999999
Q ss_pred HHHhC---CCCeeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc-c--cHHHH
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG-K--SKLYE 522 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~-~--s~~~~ 522 (680)
.++.. ..++..+.+....... ........+|+|+|++.+...... +.-..++++|+||||++... . .....
T Consensus 103 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~ 182 (220)
T 1t6n_A 103 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 182 (220)
T ss_dssp HHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHH
T ss_pred HHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHH
Confidence 99874 5566666665443222 222234569999999998765543 22346899999999998542 1 22222
Q ss_pred HHHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 523 LMTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 523 ~l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
.+..+. ...++++||||-.+ ..++
T Consensus 183 i~~~~~~~~~~i~~SAT~~~~-~~~~ 207 (220)
T 1t6n_A 183 IFRMTPHEKQVMMFSATLSKE-IRPV 207 (220)
T ss_dssp HHHTSCSSSEEEEEESCCCTT-THHH
T ss_pred HHHhCCCcCeEEEEEeecCHH-HHHH
Confidence 333333 45779999999543 4444
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-14 Score=139.94 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=108.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++.+++..++|+|||++++..+........ ...++|||||. .+..||.+++
T Consensus 26 ~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~ 92 (219)
T 1q0u_A 26 KPTEIQERIIPGALR---------GESMVGQSQTGTGKTHAYLLPIMEKIKPER----AEVQAVITAPTRELATQIYHET 92 (219)
T ss_dssp SCCHHHHHHHHHHHH---------TCCEEEECCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHHhCc----CCceEEEEcCcHHHHHHHHHHH
Confidence 489999999998865 267899999999999986554444332211 12369999997 7889999999
Q ss_pred HHHhCC------CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHH
Q psy12466 452 KKWLGL------TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLY 521 (680)
Q Consensus 452 ~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~ 521 (680)
.++... ..+..+.+...............+|+|+|++.+...... +.-..+++||+||||++.+.. ....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~ 172 (219)
T 1q0u_A 93 LKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVD 172 (219)
T ss_dssp HHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHH
T ss_pred HHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHH
Confidence 998753 344444444332222222224678999999999765543 222468899999999985432 3344
Q ss_pred HHHHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 522 ELMTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 522 ~~l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
..+..+. ...++++|||+ .+.+.++
T Consensus 173 ~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 173 QIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp HHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred HHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 4445553 45689999997 4445444
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-14 Score=137.04 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=107.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++++++..++|+|||+.++..+........ ...++|||||. .+..||.+++
T Consensus 25 ~~~~~Q~~~i~~~~~---------~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~ 91 (206)
T 1vec_A 25 KPSPIQEESIPIALS---------GRDILARAKNGTGKSGAYLIPLLERLDLKK----DNIQAMVIVPTRELALQVSQIC 91 (206)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCSSSTTHHHHHHHHHHHCCTTS----CSCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcc---------CCCEEEECCCCCchHHHHHHHHHHHhcccC----CCeeEEEEeCcHHHHHHHHHHH
Confidence 589999999988753 367999999999999877654444332211 12369999997 7889999999
Q ss_pred HHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
.++.. ...+..+.+...............+|+|+|++.+...... +.-.+++++|+||||++.... ......+
T Consensus 92 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~ 171 (206)
T 1vec_A 92 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDII 171 (206)
T ss_dssp HHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred HHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHH
Confidence 99874 4456666655443333233345688999999998765543 122368999999999875532 2223333
Q ss_pred Hhcc-cceEEEEeCCCC
Q psy12466 525 TGLN-IRKRILLSGTPL 540 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~ 540 (680)
..+. ...++++|||+-
T Consensus 172 ~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 172 LTLPKNRQILLYSATFP 188 (206)
T ss_dssp HHSCTTCEEEEEESCCC
T ss_pred HhCCccceEEEEEeeCC
Confidence 4443 567899999983
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-14 Score=149.11 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=109.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+++..+++ ++.++++..++|+|||++++..+.......+ ..++|||||. .+..||.+++
T Consensus 28 ~~~~~Q~~~i~~~~~--------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-----~~~~lil~P~~~L~~q~~~~~ 94 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN--------DEYNIVAQARTGSGKTASFAIPLIELVNENN-----GIEAIILTPTRELAIQVADEI 94 (367)
T ss_dssp SCCHHHHHHHHHHHH--------TCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-----SCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--------CCCCEEEECCCCChHHHHHHHHHHHHhcccC-----CCcEEEEcCCHHHHHHHHHHH
Confidence 589999999998865 2367899999999999998877665544321 2469999997 7889999999
Q ss_pred HHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHHH
Q psy12466 452 KKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l~ 525 (680)
.++++... +....+...... ........+|+|+|++.+...... +.-.++++||+||||.+.+.. ......+.
T Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 173 (367)
T 1hv8_A 95 ESLKGNKNLKIAKIYGGKAIYP-QIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILN 173 (367)
T ss_dssp HHHHCSSCCCEEEECTTSCHHH-HHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHH
T ss_pred HHHhCCCCceEEEEECCcchHH-HHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHH
Confidence 99987543 443443332221 112223689999999999876543 223468999999999986644 22233333
Q ss_pred hc-ccceEEEEeCCCCCC
Q psy12466 526 GL-NIRKRILLSGTPLQN 542 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n 542 (680)
.+ ...+.+++||||...
T Consensus 174 ~~~~~~~~i~~SAT~~~~ 191 (367)
T 1hv8_A 174 ACNKDKRILLFSATMPRE 191 (367)
T ss_dssp TSCSSCEEEEECSSCCHH
T ss_pred hCCCCceEEEEeeccCHH
Confidence 33 456779999999653
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.9e-14 Score=168.02 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=111.5
Q ss_pred cccCcccHHHHHHHHHhhhhhc-----cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLA-----SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTS 445 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~-----~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~ 445 (680)
..+||||.+|+..+++++.... ...+++|++.+.+|+|||++++.++..+...+ ...++|||||. .|..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~-----~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELD-----FIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCT-----TCCEEEEEECGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeCcHHHHH
Confidence 4699999999999988643211 11246899999999999999977764443221 23579999995 7889
Q ss_pred HHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh----hccCceEEEEcCcccccCcccHHH
Q psy12466 446 NWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLICDEGHRLKNGKSKLY 521 (680)
Q Consensus 446 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l----~~~~~~~vIlDEaH~~kn~~s~~~ 521 (680)
||.++|.+|.+.. +..+...............+|+|+|++++....... .-..+++||+||||+.... ...
T Consensus 345 Q~~~~f~~f~~~~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~ 419 (1038)
T 2w00_A 345 QTMKEYQRFSPDS---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQ 419 (1038)
T ss_dssp HHHHHHHTTSTTC---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHH
T ss_pred HHHHHHHHhcccc---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHH
Confidence 9999999987642 122222222222222346889999999998765431 1226899999999997532 233
Q ss_pred HHH-HhcccceEEEEeCCCCCC
Q psy12466 522 ELM-TGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 522 ~~l-~~l~~~~rllLTgTP~~n 542 (680)
+.+ ..+....+++|||||...
T Consensus 420 ~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 420 KNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHCSSEEEEEEESSCCCS
T ss_pred HHHHHhCCcccEEEEeCCcccc
Confidence 444 445667899999999864
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=140.24 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=110.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++.+++..++|+|||++++..+.......+. ..++|||||. .+..||.+++
T Consensus 65 ~~~~~Q~~~i~~i~~---------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~----~~~~lil~Ptr~L~~q~~~~~ 131 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ---------GRDIIGLAETGSGKTGAFALPILNALLETPQ----RLFALVLTPTRELAFQISEQF 131 (249)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCC----SSCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEEcCCCCCchhHhHHHHHHHHhcCCC----CceEEEEeCCHHHHHHHHHHH
Confidence 689999999988753 3679999999999999866554433322221 2359999997 7889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCc--ccHHHHHH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNG--KSKLYELM 524 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~--~s~~~~~l 524 (680)
.++... .++..+.+...............+|+|+|++.+....... .-..+++||+||||++.+. .....+.+
T Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~ 211 (249)
T 3ber_A 132 EALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 211 (249)
T ss_dssp HHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHH
T ss_pred HHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHH
Confidence 998763 4555555544433333333457899999999998765542 2245889999999987543 23334444
Q ss_pred Hhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 525 TGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~~n~~~el 547 (680)
..+. ...++++|||+- +.+.++
T Consensus 212 ~~~~~~~~~l~~SAT~~-~~v~~~ 234 (249)
T 3ber_A 212 KVIPRDRKTFLFSATMT-KKVQKL 234 (249)
T ss_dssp HSSCSSSEEEEEESSCC-HHHHHH
T ss_pred HhCCCCCeEEEEeccCC-HHHHHH
Confidence 4443 556799999984 334443
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=137.26 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=101.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHH-HHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI-ALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~ai-ali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|||.+++..+++ ++.+++..++|+|||++.+ .++..+..... ..++|||||. .+..||.+
T Consensus 35 ~~~~~~Q~~~i~~~~~---------~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~-----~~~~lil~Pt~~L~~q~~~ 100 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE---------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVK-----APQALMLAPTRELALQIQK 100 (224)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHCCTTCC-----SCCEEEECSSHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhc---------CCCEEEECCCCCcHHHHHHHHHHHHHhccCC-----CceEEEEECCHHHHHHHHH
Confidence 3589999999988753 3679999999999999854 44443322211 2469999998 78899999
Q ss_pred HHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 450 EFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 450 E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
++.++... ..+..+.+........ ......+|+|+|++.+...... +.-.++++||+||||++.+.+ ......
T Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i 179 (224)
T 1qde_A 101 VVMALAFHMDIKVHACIGGTSFVEDA-EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 179 (224)
T ss_dssp HHHHHTTTSCCCEEEECC-----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcccCceEEEEeCCcchHHHH-hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHH
Confidence 99999764 3444444433222211 1122488999999998765543 222458999999999875432 233334
Q ss_pred HHhc-ccceEEEEeCCCC
Q psy12466 524 MTGL-NIRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~ 540 (680)
+..+ ....++++|||+-
T Consensus 180 ~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 180 FTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp HHHSCTTCEEEEEESSCC
T ss_pred HHhCCccCeEEEEEeecC
Confidence 4444 3456799999984
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=138.67 Aligned_cols=166 Identities=16% Similarity=0.180 Sum_probs=110.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCC-----CCCccceEEEEecc-chHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPY-----GMPVIRKVLIVTPS-SLTS 445 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~-----~~~~~~~~LIV~P~-sll~ 445 (680)
..++|||.+++..+++ ++.+++..++|+|||+.++..+......... ......++|||||. .|..
T Consensus 44 ~~~~~~Q~~~i~~i~~---------~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 114 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE---------HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAI 114 (253)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHH
Confidence 3589999999988754 3679999999999999876555443322110 01112469999997 7889
Q ss_pred HHHHHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCc--ccH
Q psy12466 446 NWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNG--KSK 519 (680)
Q Consensus 446 qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~--~s~ 519 (680)
||.+++.++... ..+..+.+...............+|+|+|++.+....... .-..+++||+||||++.+. ...
T Consensus 115 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~ 194 (253)
T 1wrb_A 115 QILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQ 194 (253)
T ss_dssp HHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHH
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHH
Confidence 999999999765 3444455544433332333456799999999997765432 2235789999999997543 233
Q ss_pred HHHHHHhc--c---cceEEEEeCCCCCCCHHHH
Q psy12466 520 LYELMTGL--N---IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 520 ~~~~l~~l--~---~~~rllLTgTP~~n~~~el 547 (680)
....+..+ . ...++++||||- +.+.++
T Consensus 195 ~~~i~~~~~~~~~~~~q~l~~SAT~~-~~~~~~ 226 (253)
T 1wrb_A 195 IRKIIEESNMPSGINRQTLMFSATFP-KEIQKL 226 (253)
T ss_dssp HHHHHHSSCCCCGGGCEEEEEESSCC-HHHHHH
T ss_pred HHHHHhhccCCCCCCcEEEEEEEeCC-HHHHHH
Confidence 34444432 2 345899999973 334444
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=147.97 Aligned_cols=157 Identities=10% Similarity=0.110 Sum_probs=109.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+++.++++ +.++++++++|+|||++++..+........ ...++|||||. .|..||.+++
T Consensus 30 ~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~L~~q~~~~~ 96 (391)
T 1xti_A 30 HPSEVQHECIPQAIL---------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQISKEY 96 (391)
T ss_dssp SCCHHHHHHHHHHTT---------TCCEEEECSSCSSHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCcEEEECCCCCcHHHHHHHHHHHhhcccC----CCeeEEEECCCHHHHHHHHHHH
Confidence 489999999988753 367999999999999988766655433221 12369999998 7889999999
Q ss_pred HHHhC---CCCeeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCccc--HHHH-
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKS--KLYE- 522 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s--~~~~- 522 (680)
.++.. ..++..+.+....... ........+|+|+|++.+...... +.-..+++||+||||++.+... ....
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~ 176 (391)
T 1xti_A 97 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 176 (391)
T ss_dssp HHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHH
T ss_pred HHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHH
Confidence 99864 5667666665443322 222234579999999999875543 2234789999999999865321 1122
Q ss_pred HHHhc-ccceEEEEeCCCCCC
Q psy12466 523 LMTGL-NIRKRILLSGTPLQN 542 (680)
Q Consensus 523 ~l~~l-~~~~rllLTgTP~~n 542 (680)
.+... ....++++||||-..
T Consensus 177 ~~~~~~~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 177 IFRMTPHEKQVMMFSATLSKE 197 (391)
T ss_dssp HHHTSCSSSEEEEEESSCCST
T ss_pred HHhhCCCCceEEEEEeeCCHH
Confidence 22222 355689999998654
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=135.82 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=106.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.++|||.+++..+.+ ++.+++..++|+|||++.+. ++..+..... ..++|||||. .+..||.++
T Consensus 46 ~~~~~Q~~~i~~~~~---------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~lil~Pt~~L~~q~~~~ 111 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC---------GLDLIVQAKSGTGKTCVFSTIALDSLVLENL-----STQILILAPTREIAVQIHSV 111 (230)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHCCTTSC-----SCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCC-----CceEEEEeCCHHHHHHHHHH
Confidence 489999999988753 36799999999999998544 3333322221 2469999997 888999999
Q ss_pred HHHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc---ccHHHH
Q psy12466 451 FKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG---KSKLYE 522 (680)
Q Consensus 451 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~---~s~~~~ 522 (680)
+.++.. ..++..+.+........ ......+|+|+|++.+...... +.-.++++||+||||++... ......
T Consensus 112 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~ 190 (230)
T 2oxc_A 112 ITAIGIKMEGLECHVFIGGTPLSQDK-TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINW 190 (230)
T ss_dssp HHHHTTTSTTCCEEEECTTSCHHHHH-HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCCCHHHHH-HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHH
Confidence 999864 45666666654433222 1224689999999999775542 22246889999999998543 233334
Q ss_pred HHHhcc-cceEEEEeCCC
Q psy12466 523 LMTGLN-IRKRILLSGTP 539 (680)
Q Consensus 523 ~l~~l~-~~~rllLTgTP 539 (680)
.+..+. ...++++|||+
T Consensus 191 i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 191 IYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHSCSSCEEEEEESCC
T ss_pred HHHhCCCCCeEEEEEecc
Confidence 445554 45679999996
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-13 Score=145.09 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=107.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+++.++++ ++++++..++|+|||++++..+........ ...++|||||. .|..||.+++
T Consensus 43 ~~~~~Q~~~i~~i~~---------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~ 109 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT---------GRDILARAKNGTGKTAAFVIPTLEKVKPKL----NKIQALIMVPTRELALQTSQVV 109 (400)
T ss_dssp SCCHHHHHHHHHHHH---------TCCEEEECCTTSCHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEECCCCcHHHHHHHHHHHHHHhhcc----CCccEEEEcCCHHHHHHHHHHH
Confidence 589999999999865 256999999999999987766655433221 12369999997 7889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc-cHHHHHHHh
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK-SKLYELMTG 526 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~-s~~~~~l~~ 526 (680)
.++.+. ..+..+.+...............+|+|+|++.+...... ..-.++++||+||||++.+.. ......+..
T Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~ 189 (400)
T 1s2m_A 110 RTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILS 189 (400)
T ss_dssp HHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHT
T ss_pred HHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHH
Confidence 999864 344444444433322222345679999999998765543 223468999999999886543 111222222
Q ss_pred -c-ccceEEEEeCCCC
Q psy12466 527 -L-NIRKRILLSGTPL 540 (680)
Q Consensus 527 -l-~~~~rllLTgTP~ 540 (680)
+ .....++||||+-
T Consensus 190 ~~~~~~~~i~lSAT~~ 205 (400)
T 1s2m_A 190 FLPPTHQSLLFSATFP 205 (400)
T ss_dssp TSCSSCEEEEEESCCC
T ss_pred hCCcCceEEEEEecCC
Confidence 2 3456799999984
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=146.43 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=107.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|+|||.+++.++++ ++.+++..++|+|||++++..+........ ...++|||||. .+..||.++
T Consensus 42 ~~~~~~Q~~~i~~i~~---------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~L~~q~~~~ 108 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE---------GHDVLAQAQSGTGKTGTFSIAALQRIDTSV----KAPQALMLAPTRELALQIQKV 108 (394)
T ss_dssp CSCCHHHHHHHHHHHH---------TCCEEECCCSSHHHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHhhccC----CCCCEEEEcCCHHHHHHHHHH
Confidence 3689999999999865 267999999999999986554443332221 12469999997 788999999
Q ss_pred HHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l 524 (680)
+.++.+. .++..+.+......... .....+|+|+|++.+...... +...++++||+||||++... .......+
T Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~ 187 (394)
T 1fuu_A 109 VMALAFHMDIKVHACIGGTSFVEDAE-GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 187 (394)
T ss_dssp HHHHTTTSCCCEEEECSSCCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCeeEEEEeCCCchHHHHh-hcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHH
Confidence 9999865 34444554433222111 112578999999998776542 22347899999999997433 23333444
Q ss_pred Hhc-ccceEEEEeCCCCC
Q psy12466 525 TGL-NIRKRILLSGTPLQ 541 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~~ 541 (680)
..+ ....+++|||||-.
T Consensus 188 ~~~~~~~~~i~~SAT~~~ 205 (394)
T 1fuu_A 188 TLLPPTTQVVLLSATMPN 205 (394)
T ss_dssp HHSCTTCEEEEECSSCCH
T ss_pred HhCCCCceEEEEEEecCH
Confidence 444 34568999999954
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-13 Score=135.70 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=102.2
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++..+++ ++.+++..++|+|||++.+..+........ ...++|||||. .+..||.++
T Consensus 51 ~~~~~~Q~~ai~~i~~---------~~~~li~apTGsGKT~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~ 117 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK---------GYDVIAQAQSGTGKTATFAISILQQLEIEF----KETQALVLAPTRELAQQIQKV 117 (237)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEECCCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCCcHHHHHHHHHHHHHHhcC----CCceEEEEECcHHHHHHHHHH
Confidence 3589999999988753 367999999999999886554444332211 12369999997 788999999
Q ss_pred HHHHhCCC--CeeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccC--cccHHHHH
Q psy12466 451 FKKWLGLT--RMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKN--GKSKLYEL 523 (680)
Q Consensus 451 ~~~~~~~~--~v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn--~~s~~~~~ 523 (680)
+.++.... .+....+....... ........+|+|+|++.+...... +.-..+++||+||||++.. ........
T Consensus 118 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 197 (237)
T 3bor_A 118 ILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEI 197 (237)
T ss_dssp HHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHH
Confidence 99997643 33333333222211 112223478999999998765543 2234589999999998743 33444555
Q ss_pred HHhcc-cceEEEEeCCCC
Q psy12466 524 MTGLN-IRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP~ 540 (680)
+..+. ....+++|||+-
T Consensus 198 ~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 198 FQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp HHHSCTTCEEEEECSSCC
T ss_pred HHhCCCCCeEEEEEEecC
Confidence 55554 446699999984
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=145.59 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=107.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++.++++ ++.+++..++|+|||++++..+........ ...++|||||. .|..||.++
T Consensus 58 ~~~~~~Q~~ai~~i~~---------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~Pt~~L~~q~~~~ 124 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK---------GRDVIAQSQSGTGKTATFSISVLQCLDIQV----RETQALILAPTRELAVQIQKG 124 (410)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHTCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCCCchHHHHHHHHHHHhhcc----CCceEEEEcCcHHHHHHHHHH
Confidence 3589999999998864 367999999999999988766554432211 12469999997 688999999
Q ss_pred HHHHhCCCCe--eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 451 FKKWLGLTRM--CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 451 ~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
+.++.....+ ....+...............+|+|+|++.+...... +....+++||+||||++.+.. ......+
T Consensus 125 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~ 204 (410)
T 2j0s_A 125 LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 204 (410)
T ss_dssp HHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred HHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHH
Confidence 9998765433 333443332222222234578999999998765543 233468999999999986544 2223333
Q ss_pred Hhc-ccceEEEEeCCCC
Q psy12466 525 TGL-NIRKRILLSGTPL 540 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~ 540 (680)
..+ .....+++||||-
T Consensus 205 ~~~~~~~~~i~~SAT~~ 221 (410)
T 2j0s_A 205 RYLPPATQVVLISATLP 221 (410)
T ss_dssp TTSCTTCEEEEEESCCC
T ss_pred HhCccCceEEEEEcCCC
Confidence 333 3557899999984
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.7e-13 Score=139.90 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=104.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+++.++.+ ++.+++..++|+|||++++..+... + .++|||||. .++.||.+++
T Consensus 16 ~l~~~Q~~~i~~i~~---------~~~~lv~~~TGsGKT~~~~~~~~~~---~-------~~~liv~P~~~L~~q~~~~~ 76 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ---------GKNVVVRAKTGSGKTAAYAIPILEL---G-------MKSLVVTPTRELTRQVASHI 76 (337)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHH---T-------CCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEEcCCCCcHHHHHHHHHHhh---c-------CCEEEEeCCHHHHHHHHHHH
Confidence 489999999998853 3689999999999999877665432 2 248999997 7889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHHH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELMT 525 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l~ 525 (680)
.++.+. ..+..+.+....... .......+|+|+|++.+...... +.-..|++||+||||++.+.. ......+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~ 155 (337)
T 2z0m_A 77 RDIGRYMDTKVAEVYGGMPYKAQ-INRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILA 155 (337)
T ss_dssp HHHTTTSCCCEEEECTTSCHHHH-HHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhhcCCcEEEEECCcchHHH-HhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHh
Confidence 998754 344445544332221 12223589999999999876543 223468999999999985443 22233334
Q ss_pred hccc-ceEEEEeCCCCC
Q psy12466 526 GLNI-RKRILLSGTPLQ 541 (680)
Q Consensus 526 ~l~~-~~rllLTgTP~~ 541 (680)
.+.. ...+++||||-.
T Consensus 156 ~~~~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 156 QTSNRKITGLFSATIPE 172 (337)
T ss_dssp HCTTCSEEEEEESCCCH
T ss_pred hCCcccEEEEEeCcCCH
Confidence 4433 445678999954
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-13 Score=144.60 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=107.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++..+++ ++.+++..++|+|||++++..+........ ...++|||||. .|..||.++
T Consensus 61 ~~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~ 127 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK---------GYDVIAQAQSGTGKTATFAISILQQIELDL----KATQALVLAPTRELAQQIQKV 127 (414)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEECCCSCSSSHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhC---------CCCEEEECCCCCcccHHHHHHHHHHHhhcC----CceeEEEEeChHHHHHHHHHH
Confidence 3689999999988754 356999999999999997666554433221 12469999997 688999999
Q ss_pred HHHHhCCCC--eeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 451 FKKWLGLTR--MCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 451 ~~~~~~~~~--v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
+.++..... +....+....... ........+|+|+|++.+...... +....+++||+||||++.+.. ......
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~ 207 (414)
T 3eiq_A 128 VMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 207 (414)
T ss_dssp HHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHH
T ss_pred HHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHH
Confidence 999875433 3333332222221 122225679999999998776544 333458999999999975432 334444
Q ss_pred HHhc-ccceEEEEeCCCC
Q psy12466 524 MTGL-NIRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~ 540 (680)
+..+ .....++|||||-
T Consensus 208 ~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 208 FQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp HTTSCTTCEEEEECSCCC
T ss_pred HHhCCCCCeEEEEEEecC
Confidence 5555 4556799999984
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-13 Score=144.85 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=112.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+++|+|.+++..+++ +..+++..++|+|||+.++..+......+ .++|||+|. .|+.||.+++
T Consensus 21 ~~~~~Q~~~i~~i~~---------~~~~lv~apTGsGKT~~~l~~~~~~~~~~-------~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQ---------GKSFTMVAPTGVGKTTFGMMTALWLARKG-------KKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp CCCHHHHHHHHHHTT---------TCCEECCSCSSSSHHHHHHHHHHHHHTTT-------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEEeCCCCCHHHHHHHHHHHHhcCC-------CEEEEEECCHHHHHHHHHHH
Confidence 578999999988743 36799999999999996555544444222 359999997 7889999999
Q ss_pred HHHhC-CCCeeEeecCCcchh----hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC-----------
Q psy12466 452 KKWLG-LTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN----------- 515 (680)
Q Consensus 452 ~~~~~-~~~v~~~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn----------- 515 (680)
.++.+ ..++..+++...... ......+..+|+|+|++.+......+....+++||+||||.+..
T Consensus 85 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 85 QKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp HHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred HHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhh
Confidence 99886 556666666654321 12222345899999999998777666667899999999998632
Q ss_pred --cccH-HHHHHHhc------------ccceEEEEeCCCCCCCHH
Q psy12466 516 --GKSK-LYELMTGL------------NIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 516 --~~s~-~~~~l~~l------------~~~~rllLTgTP~~n~~~ 545 (680)
.... ....+..+ .....+++||||......
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 209 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH
Confidence 2222 22333333 445679999997776655
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=129.12 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=102.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC--CCCCccceEEEEecc-chHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP--YGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~--~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
..++|+|.+++..+++ ++.+++...+|.|||+.++..+........ .......++|||||. .+..||.
T Consensus 41 ~~~~~~Q~~~i~~~~~---------~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 111 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ---------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVE 111 (228)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHH
Confidence 3689999999988753 367899999999999986554433222110 000113458999997 7889999
Q ss_pred HHHHHHh-CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHH
Q psy12466 449 DEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYEL 523 (680)
Q Consensus 449 ~E~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~ 523 (680)
+++.++. ....+....+...............+|+|+|++.+...... +.-.++++||+||||++.+. .......
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 191 (228)
T 3iuy_A 112 AECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKI 191 (228)
T ss_dssp HHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHH
Confidence 9999985 34455555544433332223344689999999999765432 12235899999999987543 2333444
Q ss_pred HHhcc-cceEEEEeCCC
Q psy12466 524 MTGLN-IRKRILLSGTP 539 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP 539 (680)
+..+. ....+++|||.
T Consensus 192 ~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 192 LLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHSCSSCEEEEEESCC
T ss_pred HHhCCcCCeEEEEEeeC
Confidence 44453 45679999996
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=139.82 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=104.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++..++. ..++++++..++|+|||++++..+........ ...++|||||. .|..||.++
T Consensus 26 ~~~~~~Q~~~i~~~~~-------~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~ 94 (395)
T 3pey_A 26 QKPSKIQERALPLLLH-------NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED----ASPQAICLAPSRELARQTLEV 94 (395)
T ss_dssp CSCCHHHHHHHHHHHC-------SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCCeEEEECCCCCcHHHHHHHHHHHHhccCC----CCccEEEECCCHHHHHHHHHH
Confidence 3589999999988853 23478999999999999988766655433221 12469999997 688999999
Q ss_pred HHHHhCCCCe--eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCccc--HHHHHH
Q psy12466 451 FKKWLGLTRM--CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKS--KLYELM 524 (680)
Q Consensus 451 ~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s--~~~~~l 524 (680)
+.++.....+ ....+...... .....+|+|+|++.+...... +.-.++++||+||||++.+... .....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 170 (395)
T 3pey_A 95 VQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170 (395)
T ss_dssp HHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHH
T ss_pred HHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHH
Confidence 9998754333 33332222111 123578999999999765543 2234689999999998854221 222222
Q ss_pred H-hc-ccceEEEEeCCCC
Q psy12466 525 T-GL-NIRKRILLSGTPL 540 (680)
Q Consensus 525 ~-~l-~~~~rllLTgTP~ 540 (680)
. .+ .....+++||||-
T Consensus 171 ~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 171 KRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp HHTSCTTCEEEEEESCCC
T ss_pred HHhCCCCcEEEEEEecCC
Confidence 2 22 3456799999984
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=132.27 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=108.2
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHH-HHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW-TLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~-~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|+|.+++..++. ++.+++..++|.|||+.++..+. .+.... .......++|||||. .|..||.+
T Consensus 75 ~~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~~~lil~Pt~~La~q~~~ 144 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE---------GRDLLAAAKTGSGKTLAFLIPAVELIVKLR-FMPRNGTGVLILSPTRELAMQTFG 144 (262)
T ss_dssp CBCCHHHHHHHHHHHH---------TCCCEECCCTTSCHHHHHHHHHHHHHHHTT-CCGGGCCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCcEEEEccCCCCchHHHHHHHHHHHHhcc-ccccCCceEEEEeCCHHHHHHHHH
Confidence 3489999999988764 26789999999999998655443 333311 111112459999997 78899999
Q ss_pred HHHHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCc--ccHHHH
Q psy12466 450 EFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNG--KSKLYE 522 (680)
Q Consensus 450 E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~--~s~~~~ 522 (680)
++.++.... .+....+...............+|+|+|++.+....... .-.++++||+||||++-.. ......
T Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~ 224 (262)
T 3ly5_A 145 VLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQ 224 (262)
T ss_dssp HHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHH
Confidence 999988643 334444433332222222234889999999997765442 2245899999999987543 233333
Q ss_pred HHHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 523 LMTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 523 ~l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
.+..+. ....++||||+- +.+.++
T Consensus 225 i~~~~~~~~q~l~~SAT~~-~~v~~~ 249 (262)
T 3ly5_A 225 IIKLLPTRRQTMLFSATQT-RKVEDL 249 (262)
T ss_dssp HHHHSCSSSEEEEECSSCC-HHHHHH
T ss_pred HHHhCCCCCeEEEEEecCC-HHHHHH
Confidence 444443 456799999984 334443
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-12 Score=129.17 Aligned_cols=155 Identities=21% Similarity=0.190 Sum_probs=101.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++.+++...+|.|||+.++..+......... ...++|||||. .|..||.+++
T Consensus 51 ~~~~~Q~~~i~~~~~---------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~~lil~Pt~~L~~q~~~~~ 118 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH---------GRELLASAPTGSGKTLAFSIPILMQLKQPAN---KGFRALIISPTRELASQIHREL 118 (245)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHCSCCS---SSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCCcHHHHHHHHHHHHHhhccc---CCceEEEEeCCHHHHHHHHHHH
Confidence 589999999987753 3678999999999999865544333322111 12359999997 7889999999
Q ss_pred HHHhCCCCe--eEeecCCcchh-hhhhhcCCCCEEEEeHHHHHHHHHhh----hccCceEEEEcCcccccCc-----ccH
Q psy12466 452 KKWLGLTRM--CPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLICDEGHRLKNG-----KSK 519 (680)
Q Consensus 452 ~~~~~~~~v--~~~~~~~~~~~-~~~~~~~~~~vvI~ty~~l~~~~~~l----~~~~~~~vIlDEaH~~kn~-----~s~ 519 (680)
.+++....+ ....+...... .........+|+|+|++.+....... .-.++++||+||||++... ...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 198 (245)
T 3dkp_A 119 IKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQ 198 (245)
T ss_dssp HHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHH
T ss_pred HHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHH
Confidence 999865433 33332221111 11122346789999999997765432 2235889999999998532 122
Q ss_pred HHHHHHhc--ccceEEEEeCCC
Q psy12466 520 LYELMTGL--NIRKRILLSGTP 539 (680)
Q Consensus 520 ~~~~l~~l--~~~~rllLTgTP 539 (680)
....+..+ .....++||||+
T Consensus 199 ~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 199 LASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHHHCCCTTCEEEEEESSC
T ss_pred HHHHHHhcCCCCcEEEEEeccC
Confidence 22233333 245679999998
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-12 Score=126.39 Aligned_cols=166 Identities=14% Similarity=0.087 Sum_probs=108.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHH-HHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW-TLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~-~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|+|.+++..+++ ++.+++...+|.|||+..+..+. .+............++|||||. .|..||.+
T Consensus 50 ~~~~~~Q~~~i~~~~~---------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 120 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS---------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQ 120 (242)
T ss_dssp CSCCHHHHHHHHHHHH---------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHH
Confidence 3589999999988764 36799999999999998655443 3332211111123469999997 78899999
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHH
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYEL 523 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~ 523 (680)
++.++.. ...+..+.+...............+|+|+|++.+...... +.-.++++||+||||++-.. .......
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i 200 (242)
T 3fe2_A 121 VAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 200 (242)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHH
Confidence 9998864 3455555554443333223334579999999999765543 22246889999999987543 2233333
Q ss_pred HHhc-ccceEEEEeCCCCCCCHHHH
Q psy12466 524 MTGL-NIRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~~n~~~el 547 (680)
+..+ .....+++|||. .+.+.++
T Consensus 201 ~~~~~~~~q~~~~SAT~-~~~~~~~ 224 (242)
T 3fe2_A 201 VDQIRPDRQTLMWSATW-PKEVRQL 224 (242)
T ss_dssp HTTSCSSCEEEEEESCC-CHHHHHH
T ss_pred HHhCCccceEEEEEeec-CHHHHHH
Confidence 4444 345679999996 3334333
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.1e-12 Score=152.73 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=112.0
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-.++|+|.+++..+++.+ .......++++.++|+|||.+++..+......+ +++||+||+ .|..||.+
T Consensus 601 ~~~~t~~Q~~ai~~il~~~---~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-------~~vlvlvPt~~La~Q~~~ 670 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDM---CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-------KQVAVLVPTTLLAQQHYD 670 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHH---HSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-------CEEEEECSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH---hcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CeEEEEechHHHHHHHHH
Confidence 4457999999999987642 112234799999999999999876554444433 369999998 57799999
Q ss_pred HHHHHhCCC--CeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH
Q psy12466 450 EFKKWLGLT--RMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL 523 (680)
Q Consensus 450 E~~~~~~~~--~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~ 523 (680)
+|.++++.. ++..+.+....... .....+..+|+|+|++.+.+ .+.-.++++||+||+|++. ......
T Consensus 671 ~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~---~~~~~~l~lvIiDEaH~~g---~~~~~~ 744 (1151)
T 2eyq_A 671 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS---DVKFKDLGLLIVDEEHRFG---VRHKER 744 (1151)
T ss_dssp HHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS---CCCCSSEEEEEEESGGGSC---HHHHHH
T ss_pred HHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC---CccccccceEEEechHhcC---hHHHHH
Confidence 999988754 44445443332221 12234568999999988753 2334578999999999973 344455
Q ss_pred HHhcc-cceEEEEeCCCCCCCHHH
Q psy12466 524 MTGLN-IRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP~~n~~~e 546 (680)
+..+. ..+.++|||||..+.+..
T Consensus 745 l~~l~~~~~vl~lSATp~p~~l~~ 768 (1151)
T 2eyq_A 745 IKAMRANVDILTLTATPIPRTLNM 768 (1151)
T ss_dssp HHHHHTTSEEEEEESSCCCHHHHH
T ss_pred HHHhcCCCCEEEEcCCCChhhHHH
Confidence 55554 457899999998765443
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=135.05 Aligned_cols=160 Identities=17% Similarity=0.181 Sum_probs=109.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|+|.+++..++. ++..++..++|+|||+..+. ++..+............++|||||. .|..||.+
T Consensus 77 ~~pt~iQ~~ai~~i~~---------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 147 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS---------GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFN 147 (434)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---------CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHH
Confidence 3588999999988753 47899999999999998655 4444444322111122469999997 78899999
Q ss_pred HHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 450 EFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 450 E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
++.++... .++....+...............+|+|+|++.+...... +.-.++++||+||||++.+.+ ....+.
T Consensus 148 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i 227 (434)
T 2db3_A 148 EARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRI 227 (434)
T ss_dssp HHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHH
Confidence 99999854 345555554443333333345689999999999776543 223468999999999986543 233333
Q ss_pred HHhc---ccceEEEEeCCCC
Q psy12466 524 MTGL---NIRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l---~~~~rllLTgTP~ 540 (680)
+..+ .....+++|||+-
T Consensus 228 ~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 228 MTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp HHCTTSCSSCEEEEEESCCC
T ss_pred HHhcCCCCCceEEEEeccCC
Confidence 3332 3456799999983
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-12 Score=135.30 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=104.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|+|.+++..++. ..++.+++..++|+|||++++..+........ ...++|||||. .|..||.+.
T Consensus 46 ~~~~~~Q~~~i~~~~~-------~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~ 114 (412)
T 3fht_A 46 NRPSKIQENALPLMLA-------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----KYPQCLCLSPTYELALQTGKV 114 (412)
T ss_dssp CSCCHHHHHHHHHHHS-------SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-------CCCCeEEEECCCCchHHHHHHHHHHHHhhhcC----CCCCEEEECCCHHHHHHHHHH
Confidence 3589999999988753 23578999999999999997655544333222 12369999997 677999888
Q ss_pred HHHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccC--cccHHHH
Q psy12466 451 FKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKN--GKSKLYE 522 (680)
Q Consensus 451 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn--~~s~~~~ 522 (680)
+.++.. ...+....+....... .....+|+|+|++.+...... +.-.++++||+||||++.. .......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 191 (412)
T 3fht_A 115 IEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191 (412)
T ss_dssp HHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHH
T ss_pred HHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHH
Confidence 888764 4455544443322211 123568999999999776533 2224689999999998743 2222222
Q ss_pred HH-Hhc-ccceEEEEeCCCCC
Q psy12466 523 LM-TGL-NIRKRILLSGTPLQ 541 (680)
Q Consensus 523 ~l-~~l-~~~~rllLTgTP~~ 541 (680)
.+ ..+ .....+++||||-.
T Consensus 192 ~~~~~~~~~~~~i~~SAT~~~ 212 (412)
T 3fht_A 192 RIQRMLPRNCQMLLFSATFED 212 (412)
T ss_dssp HHHHTSCTTCEEEEEESCCCH
T ss_pred HHHhhCCCCceEEEEEeecCH
Confidence 33 333 34467999999843
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-11 Score=133.05 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=105.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC-------------CCCccceEEE
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY-------------GMPVIRKVLI 437 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~-------------~~~~~~~~LI 437 (680)
..++|+|.+++..+.. ++.+++..++|+|||+..+. ++..+...+.. ......++||
T Consensus 36 ~~~~~~Q~~~i~~i~~---------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 106 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE---------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLV 106 (417)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEE
T ss_pred CCCCHHHHHHHHHHcc---------CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEE
Confidence 3688999999987643 46799999999999987654 44444332210 0111235999
Q ss_pred Eecc-chHHHHHHHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCccc
Q psy12466 438 VTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHR 512 (680)
Q Consensus 438 V~P~-sll~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~ 512 (680)
|||. .|..||.+++.++... .++..+.+...............+|+|+|++.+...... +.-..+++||+||||+
T Consensus 107 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~ 186 (417)
T 2i4i_A 107 LAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR 186 (417)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH
T ss_pred ECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH
Confidence 9997 7889999999998754 445555554433322222334679999999999876543 2234688999999999
Q ss_pred ccCcc-cHHHHHHHh---cc---cceEEEEeCCCC
Q psy12466 513 LKNGK-SKLYELMTG---LN---IRKRILLSGTPL 540 (680)
Q Consensus 513 ~kn~~-s~~~~~l~~---l~---~~~rllLTgTP~ 540 (680)
+.... ......+.. +. ....+++|||+-
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 221 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCC
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCC
Confidence 75432 222223322 11 346799999983
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-12 Score=147.19 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=110.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+++|.+++..+.+.+ ......+.++..++|+|||++++..+......+. ++||+||. .|..||.+++
T Consensus 368 ~lt~~Q~~ai~~I~~~l---~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~-------qvlvlaPtr~La~Q~~~~l 437 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDM---ISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF-------QTAFMVPTSILAIQHYRRT 437 (780)
T ss_dssp CCCHHHHHHHHHHHHHH---HSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS-------CEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhc---cccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC-------eEEEEeCcHHHHHHHHHHH
Confidence 69999999999887642 2233457899999999999998776665554442 48999998 7779999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhh----hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~----~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
.++++. .++..+++........ ....+..+|+|+|++.+.. .+.-.++++||+||+|++.... . ..+.
T Consensus 438 ~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~~~~~~l~lVVIDEaHr~g~~q--r-~~l~ 511 (780)
T 1gm5_A 438 VESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE---DVHFKNLGLVIIDEQHRFGVKQ--R-EALM 511 (780)
T ss_dssp HHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---CCCCSCCCEEEEESCCCC--------CCCC
T ss_pred HHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh---hhhccCCceEEecccchhhHHH--H-HHHH
Confidence 999873 5666666665443221 1234568999999988744 3334578999999999973221 1 1111
Q ss_pred h-cccceEEEEeCCCCCCCHH
Q psy12466 526 G-LNIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 526 ~-l~~~~rllLTgTP~~n~~~ 545 (680)
. ....+.++|||||+...+.
T Consensus 512 ~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp SSSSCCCEEEEESSCCCHHHH
T ss_pred HhCCCCCEEEEeCCCCHHHHH
Confidence 1 1356789999999875544
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=155.65 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=83.5
Q ss_pred CCCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hcccCCCCEEEEehhHHHHHH---HhhhcCCCcE
Q psy12466 190 SYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAY---QTIVDTEFDL 264 (680)
Q Consensus 190 ~~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~V~itsYe~l~~~~---~~l~~~~~~~ 264 (680)
...+++|||||.+|+.||.+||.+|++ .++.++++........ ......++|+|+||+++.+.. ..+....|++
T Consensus 198 g~~~rvLIVvP~sLl~Qw~~E~~~~f~-l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dl 276 (968)
T 3dmq_A 198 GAAERVLIIVPETLQHQWLVEMLRRFN-LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276 (968)
T ss_dssp SSCCCEEEECCTTTHHHHHHHHHHHSC-CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCE
T ss_pred CCCCeEEEEeCHHHHHHHHHHHHHHhC-CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCE
Confidence 345689999999999999999999995 6666665543221111 122245789999999997653 3466788999
Q ss_pred EEEcCCCCCCCCCCCC---CccccCC--CCCCceeccCCC
Q psy12466 265 LICDEKSLLKPPSGNS---PGNDSGI--PSLPRKSDSGIG 299 (680)
Q Consensus 265 vI~DEaH~lKN~~s~~---~~a~~~l--~~~~r~~LTG~~ 299 (680)
||+||||++||..++. ++++..+ .+.++++|||+.
T Consensus 277 VIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATP 316 (968)
T 3dmq_A 277 LVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATP 316 (968)
T ss_dssp EEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSC
T ss_pred EEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCC
Confidence 9999999999998887 6677777 677799999875
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-11 Score=143.02 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=110.7
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-.|+|||.+++..+.. +.+++++.++|+|||+++...+......+ .++||++|. .|..||.+
T Consensus 84 ~f~L~~~Q~eai~~l~~---------g~~vLV~apTGSGKTlva~lai~~~l~~g-------~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR---------GESVLVSAHTSAGKTVVAEYAIAQSLKNK-------QRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH---------TCEEEEECCTTSCHHHHHHHHHHHHHHTT-------CEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc---------CCCEEEECCCCCChHHHHHHHHHHHhccC-------CeEEEECChHHHHHHHHH
Confidence 34699999999998754 36799999999999998865555444433 369999997 88899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELMT 525 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l~ 525 (680)
+|.++++ .+.++.|..... ...+|+|+|++.+...... ..-.++++||+||||++.+.. ......+.
T Consensus 148 ~l~~~~~--~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 148 ELLAEFG--DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HHHHHHS--CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HHHHHhC--CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 9999988 566666554322 2578999999998765432 222468999999999997652 22333444
Q ss_pred hc-ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 526 GL-NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n~~~el~sll 551 (680)
.+ .....++||||+- | ..++...+
T Consensus 219 ~l~~~~~il~LSATi~-n-~~e~a~~l 243 (1010)
T 2xgj_A 219 LLPDKVRYVFLSATIP-N-AMEFAEWI 243 (1010)
T ss_dssp HSCTTCEEEEEECCCT-T-HHHHHHHH
T ss_pred hcCCCCeEEEEcCCCC-C-HHHHHHHH
Confidence 44 3457799999953 3 45554444
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-11 Score=136.09 Aligned_cols=162 Identities=21% Similarity=0.187 Sum_probs=104.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|+|.+++..++. ..+...|+...+|+|||++.+..+...............++|||||. .|..||.+++
T Consensus 43 ~~~~~Q~~~i~~il~-------~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~ 115 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS-------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 115 (579)
T ss_dssp SCCHHHHHHHHHHHC-------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-------cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHH
Confidence 589999999988752 23567899999999999986655444333322111223469999997 7889999999
Q ss_pred HHHhC------CCCeeEeecCCcchh-hhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCcc--cH
Q psy12466 452 KKWLG------LTRMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNGK--SK 519 (680)
Q Consensus 452 ~~~~~------~~~v~~~~~~~~~~~-~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~~--s~ 519 (680)
.+++. ...+....+...... .........+|+|+|++.+....... .-..+++||+||||++.... ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~ 195 (579)
T 3sqw_A 116 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDD 195 (579)
T ss_dssp HHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHH
Confidence 99752 233444443332222 12222346899999999997655432 23468999999999986543 22
Q ss_pred HHHHHHhc---c-----cceEEEEeCCCCC
Q psy12466 520 LYELMTGL---N-----IRKRILLSGTPLQ 541 (680)
Q Consensus 520 ~~~~l~~l---~-----~~~rllLTgTP~~ 541 (680)
....+..+ . ....+++|||+-.
T Consensus 196 ~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 196 LETISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp HHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred HHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence 22222222 1 3468999999853
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-11 Score=137.30 Aligned_cols=163 Identities=21% Similarity=0.184 Sum_probs=104.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|+|.+++..++. ..++..|+...+|+|||++++..+......+........++|||+|. .|..||.++
T Consensus 93 ~~~~~~Q~~~i~~~l~-------~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS-------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp SSCCHHHHHHHHHHHS-------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-------CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHH
Confidence 3589999999988752 23567899999999999986655444333332212223469999997 788999999
Q ss_pred HHHHhC------CCCeeEeecCCcchh-hhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCcc--c
Q psy12466 451 FKKWLG------LTRMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNGK--S 518 (680)
Q Consensus 451 ~~~~~~------~~~v~~~~~~~~~~~-~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~~--s 518 (680)
+.+++. ...+....+...... .........+|+|+|++.+....... .-..+++||+||||++.... .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~ 245 (563)
T 3i5x_A 166 VKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRD 245 (563)
T ss_dssp HHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHH
T ss_pred HHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHH
Confidence 998753 223343433332221 12222346799999999997655432 22458999999999985542 2
Q ss_pred HHHHHHHhc---c-----cceEEEEeCCCCC
Q psy12466 519 KLYELMTGL---N-----IRKRILLSGTPLQ 541 (680)
Q Consensus 519 ~~~~~l~~l---~-----~~~rllLTgTP~~ 541 (680)
.....+..+ . ....+++|||+-.
T Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 246 DLETISGILNEKNSKSADNIKTLLFSATLDD 276 (563)
T ss_dssp HHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred HHHHHHHhhhhccccCccCceEEEEEccCCH
Confidence 222222222 1 3358999999853
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7e-11 Score=133.26 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=111.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|+|.+++..+++ ++.+++..++|.|||+..+..+. ... +++|||+|. +|+.||.+++
T Consensus 25 ~~r~~Q~~~i~~il~---------g~d~lv~apTGsGKTl~~~lp~l--~~~--------g~~lvi~P~~aL~~q~~~~l 85 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS---------GRDCLVVMPTGGGKSLCYQIPAL--LLN--------GLTVVVSPLISLMKDQVDQL 85 (523)
T ss_dssp SCCTTHHHHHHHHHT---------TCCEEEECSCHHHHHHHHHHHHH--HSS--------SEEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEECCCCcHHHHHHHHHHH--HhC--------CCEEEECChHHHHHHHHHHH
Confidence 589999999998864 36799999999999986543322 221 358999997 8889999999
Q ss_pred HHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHH--HHHhhhccCceEEEEcCcccccCcc---cHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLLICDEGHRLKNGK---SKLYE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~--~~~~l~~~~~~~vIlDEaH~~kn~~---s~~~~ 522 (680)
.++ ...+..+++....... .....+..+++++|++.+.. ..+.+...++++||+||||.+...+ ...+.
T Consensus 86 ~~~--gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~ 163 (523)
T 1oyw_A 86 QAN--GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYA 163 (523)
T ss_dssp HHT--TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHH
T ss_pred HHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHH
Confidence 986 3445555554432211 12234568999999999853 2233555789999999999985432 22233
Q ss_pred HH----HhcccceEEEEeCCCCCCCHHHHHHHHhhh
Q psy12466 523 LM----TGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554 (680)
Q Consensus 523 ~l----~~l~~~~rllLTgTP~~n~~~el~sll~fl 554 (680)
.+ ..+....+++|||||......++...+.+-
T Consensus 164 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 199 (523)
T 1oyw_A 164 ALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLN 199 (523)
T ss_dssp GGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCC
Confidence 33 233456789999999887777777766543
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-11 Score=131.27 Aligned_cols=156 Identities=11% Similarity=0.083 Sum_probs=101.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|+|.+++..++. ..++..|+...+|+|||++.+..+......+. ...++|||+|. .|..||.+.
T Consensus 113 ~~p~~~Q~~ai~~il~-------~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~----~~~~~lil~Pt~~La~Q~~~~ 181 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA-------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----KYPQCLCLSPTYELALQTGKV 181 (479)
T ss_dssp CSCCHHHHHHHHHHTS-------BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC----CCCcEEEEeChHHHHHHHHHH
Confidence 4578899999988743 23578999999999999986554433322221 12359999997 677999888
Q ss_pred HHHHh---CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCc--ccHHHH
Q psy12466 451 FKKWL---GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNG--KSKLYE 522 (680)
Q Consensus 451 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~--~s~~~~ 522 (680)
+.++. +...+....+....... .....+|+|+|++.+...... +.-.++++||+||||++... ......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 258 (479)
T 3fmp_B 182 IEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258 (479)
T ss_dssp HHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHH
T ss_pred HHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHH
Confidence 77765 34455444443322111 123468999999999776533 22246899999999987542 222222
Q ss_pred HHHhc--ccceEEEEeCCCCC
Q psy12466 523 LMTGL--NIRKRILLSGTPLQ 541 (680)
Q Consensus 523 ~l~~l--~~~~rllLTgTP~~ 541 (680)
.+... .....+++||||-.
T Consensus 259 ~i~~~~~~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 259 RIQRMLPRNCQMLLFSATFED 279 (479)
T ss_dssp HHHTTSCTTSEEEEEESCCCH
T ss_pred HHHhhCCccceEEEEeCCCCH
Confidence 33332 34567999999943
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-10 Score=137.50 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=109.5
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|+|.+++..+. .+...|++.++|.|||+++...+......+ +++||++|. .|..||.+
T Consensus 182 ~f~ltp~Q~~AI~~i~---------~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-------~rvlvl~PtraLa~Q~~~ 245 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID---------RGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------QRVIYTSPIKALSNQKYR 245 (1108)
T ss_dssp SSCCCHHHHHHHHHHT---------TTCCEEEECCSSSHHHHHHHHHHHHHHHTT-------CEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---------cCCCEEEECCCCCChHHHHHHHHHHHHhcC-------CeEEEEcCcHHHHHHHHH
Confidence 3468999999998863 347899999999999999866665555443 369999997 78899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcc--cHHHHHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGK--SKLYELMT 525 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~--s~~~~~l~ 525 (680)
+|.++++ .+.++.+.... ....+|+|+|++.+......-. -.++++||+||||++.... ......+.
T Consensus 246 ~l~~~~~--~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~ 316 (1108)
T 3l9o_A 246 ELLAEFG--DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETII 316 (1108)
T ss_dssp HHHHHTS--SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHH
T ss_pred HHHHHhC--CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHH
Confidence 9999988 45656554432 2357899999999877543311 1258999999999986532 22333344
Q ss_pred hc-ccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 526 GL-NIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
.+ .....++|||| +.|. .++...+.
T Consensus 317 ~l~~~~qvl~lSAT-ipn~-~e~a~~l~ 342 (1108)
T 3l9o_A 317 LLPDKVRYVFLSAT-IPNA-MEFAEWIC 342 (1108)
T ss_dssp HSCTTSEEEEEECS-CSSC-HHHHHHHH
T ss_pred hcCCCceEEEEcCC-CCCH-HHHHHHHH
Confidence 44 34567999999 4443 44444433
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=133.85 Aligned_cols=158 Identities=23% Similarity=0.201 Sum_probs=108.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|+|.+++..+. .+..++++.++|.|||.++...+......+ +++|+++|. .+..||.+++
T Consensus 25 ~l~~~Q~~~i~~i~---------~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF---------SGKNLLLAMPTAAGKTLLAEMAMVREAIKG-------GKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp CCCCCCHHHHHHHT---------TCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---------CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CcEEEEeCcHHHHHHHHHHH
Confidence 58999999998853 257899999999999999855554333332 259999998 5889999999
Q ss_pred HHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCc--ccHHHHHHHh
Q psy12466 452 KKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNG--KSKLYELMTG 526 (680)
Q Consensus 452 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~--~s~~~~~l~~ 526 (680)
+++.+ +.++....|....... .....+|+|+|++.+......-. -.++++||+||+|.+... .......+..
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~ 165 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHH
Confidence 76654 3456666654433222 12368999999999976554321 136789999999998652 2222223333
Q ss_pred c----ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 527 L----NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 527 l----~~~~rllLTgTP~~n~~~el~sll 551 (680)
+ ...+.++||||+- +..++...+
T Consensus 166 l~~~~~~~~ii~lSATl~--n~~~~~~~l 192 (702)
T 2p6r_A 166 MRRMNKALRVIGLSATAP--NVTEIAEWL 192 (702)
T ss_dssp HHHHCTTCEEEEEECCCT--THHHHHHHT
T ss_pred HHhcCcCceEEEECCCcC--CHHHHHHHh
Confidence 3 3567799999985 266665543
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=132.67 Aligned_cols=160 Identities=15% Similarity=0.092 Sum_probs=108.2
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|+|.+++..++. ++.+++..++|.|||+..+..+. ... +++|||+|. +|+.||.+.
T Consensus 43 ~~~rp~Q~~~i~~il~---------g~d~lv~~pTGsGKTl~~~lpal--~~~--------g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA---------GKEVFLVMPTGGGKSLCYQLPAL--CSD--------GFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp CSCCTTHHHHHHHHHT---------TCCEEEECCTTSCTTHHHHHHHH--TSS--------SEEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEECCCChHHHHHHHHHH--HcC--------CcEEEEeCHHHHHHHHHHH
Confidence 3689999999988854 36799999999999986543332 111 369999997 888999999
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhh------hcCCCCEEEEeHHHHHH---HHHhh----hccCceEEEEcCcccccCcc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYV------YSRVSPVLIISYEMLIR---AYQTI----VDTEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~vvI~ty~~l~~---~~~~l----~~~~~~~vIlDEaH~~kn~~ 517 (680)
+.++ +..+..+++.......... .....+|+++|++.+.. ..+.+ ....+++||+||||.+...+
T Consensus 104 l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g 181 (591)
T 2v1x_A 104 LKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWG 181 (591)
T ss_dssp HHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTC
T ss_pred HHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccc
Confidence 9997 4555555555433221111 24578999999998742 22222 23478999999999975422
Q ss_pred -------cHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 518 -------SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 518 -------s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
.........+....+++|||||-.....++...+.
T Consensus 182 ~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 182 HDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp TTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhC
Confidence 11112223345667899999997665566655554
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-10 Score=132.72 Aligned_cols=159 Identities=23% Similarity=0.220 Sum_probs=109.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHH-HHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW-TLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~-~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.|+|+|.+++..++ ..+...+++.++|.|||.++...+. .+...+ +++++++|. .+..||.++
T Consensus 30 ~l~~~Q~~~i~~~~--------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~-------~~il~i~P~r~La~q~~~~ 94 (715)
T 2va8_A 30 KLNPPQTEAVKKGL--------LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG-------GKAIYVTPLRALTNEKYLT 94 (715)
T ss_dssp BCCHHHHHHHHTTT--------TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-------SEEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC-------CeEEEEeCcHHHHHHHHHH
Confidence 68999999997632 2357899999999999999855554 333332 369999998 588999999
Q ss_pred HHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCc--ccHHHHHHH
Q psy12466 451 FKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNG--KSKLYELMT 525 (680)
Q Consensus 451 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~--~s~~~~~l~ 525 (680)
++++.+ +.++....|........ ....+|+|+|++.+......-. -.++++||+||+|.+.+. .......+.
T Consensus 95 ~~~~~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~ 171 (715)
T 2va8_A 95 FKDWELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTI 171 (715)
T ss_dssp HGGGGGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHH
T ss_pred HHHhhcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHH
Confidence 966543 34565555544332221 2368999999999877554321 236799999999998642 222333444
Q ss_pred hcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 526 GLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 526 ~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
.++..+.++||||+-. ..++...+
T Consensus 172 ~~~~~~ii~lSATl~n--~~~~~~~l 195 (715)
T 2va8_A 172 RAKRRNLLALSATISN--YKQIAKWL 195 (715)
T ss_dssp HHHTSEEEEEESCCTT--HHHHHHHH
T ss_pred hcccCcEEEEcCCCCC--HHHHHHHh
Confidence 5567788999999953 56665544
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=134.01 Aligned_cols=159 Identities=21% Similarity=0.228 Sum_probs=110.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.|+|+|.+++..++ ..+...+++.++|.|||.++ ++++..+...+ +++|+++|. .+..||.++
T Consensus 23 ~l~~~Q~~~i~~~~--------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~-------~~~l~i~P~raLa~q~~~~ 87 (720)
T 2zj8_A 23 SFYPPQAEALKSGI--------LEGKNALISIPTASGKTLIAEIAMVHRILTQG-------GKAVYIVPLKALAEEKFQE 87 (720)
T ss_dssp BCCHHHHHHHTTTG--------GGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC-------SEEEEECSSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------cCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC-------CEEEEEcCcHHHHHHHHHH
Confidence 58999999997522 12578999999999999998 45554554333 369999997 888999999
Q ss_pred HHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCc--ccHHHHHHH
Q psy12466 451 FKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNG--KSKLYELMT 525 (680)
Q Consensus 451 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~--~s~~~~~l~ 525 (680)
+.++.+ +.++..+.|....... .....+|+|+|++.+......-. -.++++||+||+|.+... .......+.
T Consensus 88 ~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~ 164 (720)
T 2zj8_A 88 FQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILA 164 (720)
T ss_dssp TGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHH
Confidence 976654 4566666664433222 12368999999999976544321 136899999999998652 222333344
Q ss_pred hcc-cceEEEEeCCCCCCCHHHHHHHH
Q psy12466 526 GLN-IRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 526 ~l~-~~~rllLTgTP~~n~~~el~sll 551 (680)
.++ ..+.++||||+-. ..++...+
T Consensus 165 ~l~~~~~ii~lSATl~n--~~~~~~~l 189 (720)
T 2zj8_A 165 HMLGKAQIIGLSATIGN--PEELAEWL 189 (720)
T ss_dssp HHBTTBEEEEEECCCSC--HHHHHHHT
T ss_pred HhhcCCeEEEEcCCcCC--HHHHHHHh
Confidence 444 5678999999853 56665543
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-10 Score=136.61 Aligned_cols=157 Identities=21% Similarity=0.165 Sum_probs=112.6
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-.|+|+|.+++..+.+ +..++++.++|.|||+++...+......+ .++||++|. .|..||.+
T Consensus 37 ~f~l~~~Q~~aI~~il~---------g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------~~vlvl~PtraLa~Q~~~ 100 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ---------GDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------TKTIYTSPIKALSNQKFR 100 (997)
T ss_dssp SSCCCHHHHHHHHHHHT---------TCEEEEECCTTSCSHHHHHHHHHHHHHTT-------CEEEEEESCGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc---------CCCEEEEECCCCcHHHHHHHHHHHHHhcC-------CeEEEEeCCHHHHHHHHH
Confidence 34689999999987743 46899999999999997665555554443 369999996 78899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCc--ccHHHHHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNG--KSKLYELMT 525 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~--~s~~~~~l~ 525 (680)
++.++++...+..+++..... ...+|+|+|.+.+......- .-.++++||+||||++.+. .......+.
T Consensus 101 ~l~~~~~~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 101 DFKETFDDVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp HHHTTC--CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred HHHHHcCCCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 999998877888777754322 35789999999997655332 2246899999999998653 333445555
Q ss_pred hcc-cceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 526 GLN-IRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 526 ~l~-~~~rllLTgTP~~n~~~el~sll~ 552 (680)
.+. ....++|||||-. ..++...+.
T Consensus 174 ~l~~~v~iIlLSAT~~n--~~ef~~~l~ 199 (997)
T 4a4z_A 174 MLPQHVKFILLSATVPN--TYEFANWIG 199 (997)
T ss_dssp HSCTTCEEEEEECCCTT--HHHHHHHHH
T ss_pred hcccCCCEEEEcCCCCC--hHHHHHHHh
Confidence 554 4567999999743 335555443
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-10 Score=117.59 Aligned_cols=155 Identities=13% Similarity=0.111 Sum_probs=100.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHH-HHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI-ALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~ai-ali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+.|+|.+++..++. ..++..|+...+|+|||+..+ .++..+..... ..++|||||. .|..|+.+
T Consensus 113 ~~pt~iQ~~ai~~il~-------~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~-----~~~~lil~PtreLa~Q~~~ 180 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA-------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK-----YPQCLCLSPTYELALQTGK 180 (300)
T ss_dssp CSCCHHHHHHHHHHTS-------SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC-----SCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCCeEEEECCCCCCccHHHHHHHHHhhhccCC-----CceEEEEcCcHHHHHHHHH
Confidence 4578899999977642 234789999999999999854 33433322221 2259999997 78899988
Q ss_pred HHHHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccC--cccHHH
Q psy12466 450 EFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKN--GKSKLY 521 (680)
Q Consensus 450 E~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn--~~s~~~ 521 (680)
.+.++.. ...+....+........ ....+|+|+|.+.+...+.. +.-..+.+||+||||++-. ......
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~ 257 (300)
T 3fmo_B 181 VIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQS 257 (300)
T ss_dssp HHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHH
T ss_pred HHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHH
Confidence 8888764 44555554443322111 24568999999999776633 2223688999999999753 111222
Q ss_pred HHH-Hhc-ccceEEEEeCCCCC
Q psy12466 522 ELM-TGL-NIRKRILLSGTPLQ 541 (680)
Q Consensus 522 ~~l-~~l-~~~~rllLTgTP~~ 541 (680)
..+ ..+ .....+++|||+-.
T Consensus 258 ~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 258 IRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp HHHHTTSCTTCEEEEEESCCCH
T ss_pred HHHHHhCCCCCEEEEEeccCCH
Confidence 222 233 33467999999843
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=133.31 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=111.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
++.|+|.+++..+++ +...++...+|+|||..++..+......+ .++|||+|. .|..|+.+.+
T Consensus 78 ~pt~iQ~~ai~~il~---------g~dvlv~ApTGSGKTl~~l~~il~~~~~~-------~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ---------GKSFTMVAPTGVGKTTFGMMTALWLARKG-------KKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp CCCHHHHHHHHHHTT---------TCCEEECCSTTCCHHHHHHHHHHHHHTTT-------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEeCCCCcHHHHHHHHHHHHHhcC-------CeEEEEechHHHHHHHHHHH
Confidence 478999999987743 46789999999999996655555544333 359999997 7889999999
Q ss_pred HHHh-CCCCeeEeecCCcchh----hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc---------
Q psy12466 452 KKWL-GLTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK--------- 517 (680)
Q Consensus 452 ~~~~-~~~~v~~~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~--------- 517 (680)
.++. ...++..+++...... ......+..+|+|+|.+.+.+....+...++++||+||||.+....
T Consensus 142 ~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 142 QKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp HTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred HHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHh
Confidence 9976 2346777776654411 1222334589999999999777666666789999999999864311
Q ss_pred ----cH-HHHHHHhc------------ccceEEEEeCCCCCCCHHH
Q psy12466 518 ----SK-LYELMTGL------------NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 518 ----s~-~~~~l~~l------------~~~~rllLTgTP~~n~~~e 546 (680)
.. ....+..+ .....+++||||....+.+
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~ 267 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP 267 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTT
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHH
Confidence 11 22333333 2346799999987766553
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-09 Score=118.22 Aligned_cols=108 Identities=9% Similarity=0.081 Sum_probs=76.0
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI 266 (680)
..++|||||. +|+.+|.+||.+|++ ..++..+++.......... ...++|+|+||+++..... .+....|++||
T Consensus 52 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vI 130 (494)
T 1wp9_A 52 GGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIV 130 (494)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEE
Confidence 4589999997 899999999999984 3366677666543322111 1357899999999987665 34557799999
Q ss_pred EcCCCCCCCCCCCCC--cc-ccCCCCCCceeccCCCC
Q psy12466 267 CDEKSLLKPPSGNSP--GN-DSGIPSLPRKSDSGIGS 300 (680)
Q Consensus 267 ~DEaH~lKN~~s~~~--~a-~~~l~~~~r~~LTG~~~ 300 (680)
+||||++++..+... +. .......++++|||+..
T Consensus 131 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG 167 (494)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred EECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 999999997533211 11 11234667999998753
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.77 E-value=5.8e-09 Score=107.47 Aligned_cols=69 Identities=30% Similarity=0.310 Sum_probs=46.4
Q ss_pred eeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHhccCccccCCC
Q psy12466 604 ILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA-------SRDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 604 ~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-------~~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
-+||+|++|..+||++.+.+++|+||+.|+++|+.+++.....+ +...+++.+++|||+||||.|+.+.
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~ 88 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 88 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCC
Confidence 58999999999999999999999999999999999998775544 2345788999999999999998743
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=121.40 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=103.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
+ |+|.+++..+++ ++..++..++|+|||+.++.++..+...+ .++|||+|. .|..|+.+++.
T Consensus 58 p-~iQ~~ai~~il~---------g~dvlv~apTGSGKTl~~lp~l~~~~~~~-------~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 58 R-AIQKMWAKRILR---------KESFAATAPTGVGKTSFGLAMSLFLALKG-------KRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp C-HHHHHHHHHHHT---------TCCEECCCCBTSCSHHHHHHHHHHHHTTS-------CCEEEEESCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHh---------CCCEEEEcCCCCCHHHHHHHHHHHHhhcC-------CeEEEEeccHHHHHHHHHHHH
Confidence 6 899999987753 36899999999999985555555554433 259999997 78899999999
Q ss_pred HHhCCC------CeeEeecCCcchhh--hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 453 KWLGLT------RMCPYHVNQKNKAE--DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 453 ~~~~~~------~v~~~~~~~~~~~~--~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
+++... ++..++|....... ........+|+|+|.+.+......+. .+++||+||||++.+........+
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~ 198 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLL 198 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHH
Confidence 998654 45556655443321 11111128999999999987555433 688999999999876433333333
Q ss_pred Hhc------------ccceEEEEeCCCCCC
Q psy12466 525 TGL------------NIRKRILLSGTPLQN 542 (680)
Q Consensus 525 ~~l------------~~~~rllLTgTP~~n 542 (680)
..+ .....+++|||+-..
T Consensus 199 ~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp HHTTEEEETTTTEEEECCSSEEEECCCCSC
T ss_pred HHhCcchhhhhhhcccCCceEEEEecCCCc
Confidence 333 123458888887655
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=94.72 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=92.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHH-HHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT-LLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~-~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.++++|.+++..+.. +...++...+|.|||.+...++.. ....+. .....+++++|. .+..|..+.
T Consensus 61 p~~~~q~~~i~~i~~---------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 61 PVKKFESEILEAISQ---------NSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp GGGGGHHHHHHHHHH---------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc---------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHH
Confidence 378899999988754 367889999999999765554433 333221 112368999997 455777777
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc-cCcccH--HHHHH-Hh
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL-KNGKSK--LYELM-TG 526 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~-kn~~s~--~~~~l-~~ 526 (680)
+...++..- ....+. ..+..........+|+|+|.+.+.+.... .-.++++||+||||.. -+.+.. ..+.+ ..
T Consensus 129 ~~~~~~~~~-~~~~g~-~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 129 VAFERGEEP-GKSCGY-SVRFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp HHHTTTCCT-TSSEEE-EETTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccc-CceEEE-eechhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 776654311 000010 01111111123467999999988776544 2346899999999973 111111 11222 22
Q ss_pred cccceEEEEeCCCCCC
Q psy12466 527 LNIRKRILLSGTPLQN 542 (680)
Q Consensus 527 l~~~~rllLTgTP~~n 542 (680)
......+++|||+-..
T Consensus 206 ~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 206 YPEVRIVLMSATIDTS 221 (235)
T ss_dssp CTTSEEEEEECSSCCH
T ss_pred CCCCeEEEEecCCCHH
Confidence 2445679999998544
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-07 Score=102.75 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 397 LEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
++..++..++|.|||.++ ++++......+ .++||++|. .|..|+.+.+. ...+....+....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g-------~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~----- 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR-------LRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS----- 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTT----TSCEEEC-----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC-------CCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc-----
Confidence 467899999999999997 55554554443 259999998 56688777664 3444433332111
Q ss_pred hhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCccc-HHHHHHHhc---ccceEEEEeCCCCCC
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKS-KLYELMTGL---NIRKRILLSGTPLQN 542 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s-~~~~~l~~l---~~~~rllLTgTP~~n 542 (680)
.......+.+++...+...... ..-.++++||+||+|++ +... .....+..+ .....++|||||...
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 1112344666777776543222 11346899999999998 3222 222233333 356789999999753
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-08 Score=103.13 Aligned_cols=100 Identities=18% Similarity=0.311 Sum_probs=67.9
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
++|||||. +|+.||.+||.+|..... +..+.++... .. ......+|+|+||+.+.+..... -..+++||+|||
T Consensus 159 ~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEa 234 (282)
T 1rif_A 159 KILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASK-DD--KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDEC 234 (282)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSS-TT--CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETG
T ss_pred eEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcc-hh--hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECC
Confidence 89999997 788999999999975332 2333232211 11 22255789999999886543321 246899999999
Q ss_pred CCCCCCCCCCCccccCC-CCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGI-PSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l-~~~~r~~LTG~~ 299 (680)
|+++++ .....+..+ .+.++++|||+.
T Consensus 235 H~~~~~--~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 235 HLATGK--SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp GGCCHH--HHHHHTTTCTTCCEEEEECSSC
T ss_pred ccCCcc--cHHHHHHHhhcCCeEEEEeCCC
Confidence 999975 334455555 456688888765
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.3e-08 Score=107.94 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=72.7
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCC-eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
+++|||||. +|+.||.++|.+ ++ .+ +..++++.. ...+|+|+||+.+......+. ..|++||+||+
T Consensus 134 ~~~Lvl~P~~~L~~Q~~~~~~~-~~-~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEa 201 (472)
T 2fwr_A 134 TPTLIVVPTLALAEQWKERLGI-FG-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEV 201 (472)
T ss_dssp SCEEEEESSHHHHHHHHHHGGG-GC-GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETG
T ss_pred CCEEEEECCHHHHHHHHHHHHh-CC-CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECC
Confidence 589999999 999999999999 45 45 666665542 236899999999987766553 45999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccCCCC
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSGIGS 300 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG~~~ 300 (680)
|++.++..+ ..+..+.+.++++|||+..
T Consensus 202 H~~~~~~~~--~~~~~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 202 HHLPAESYV--QIAQMSIAPFRLGLTATFE 229 (472)
T ss_dssp GGTTSTTTH--HHHHTCCCSEEEEEESCCC
T ss_pred cCCCChHHH--HHHHhcCCCeEEEEecCcc
Confidence 999987543 3555567777888887654
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.53 E-value=8.9e-08 Score=96.51 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=70.1
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCC-eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcC
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDE 269 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DE 269 (680)
..++|||||. +|+.+|.++|.+ ++ .+ +..+.+... ...+|+|+||+.+......+. ..|++||+||
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~-~~-~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDE 200 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGI-FG-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDE 200 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGG-GC-GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh-CC-CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEEC
Confidence 3579999998 788999999999 44 34 555555432 246899999999987666543 4699999999
Q ss_pred CCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 270 KSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 270 aH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
+|++.+..- .+.+..+...++++|||+.
T Consensus 201 aH~l~~~~~--~~i~~~~~~~~~l~LSATp 228 (237)
T 2fz4_A 201 VHHLPAESY--VQIAQMSIAPFRLGLTATF 228 (237)
T ss_dssp SSCCCTTTH--HHHHHTCCCSEEEEEEESC
T ss_pred CccCCChHH--HHHHHhccCCEEEEEecCC
Confidence 999987542 2344556677788888764
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=98.52 E-value=6.7e-07 Score=113.01 Aligned_cols=160 Identities=14% Similarity=0.180 Sum_probs=102.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+.|.|.+++.-++. .+.+.+++..+|.|||+.+.. ++..+..... +++|+|+|. +|..|=.+++
T Consensus 927 fnpiQ~q~~~~l~~--------~~~nvlv~APTGSGKTliaelail~~l~~~~~------~kavyi~P~raLa~q~~~~~ 992 (1724)
T 4f92_B 927 FNPIQTQVFNTVYN--------SDDNVFVGAPTGSGKTICAEFAILRMLLQSSE------GRCVYITPMEALAEQVYMDW 992 (1724)
T ss_dssp CCHHHHHHHHHHHS--------CCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT------CCEEEECSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc--------CCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC------CEEEEEcChHHHHHHHHHHH
Confidence 56779988877653 457899999999999998744 4444444321 358999997 7777777777
Q ss_pred HHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhc----cCceEEEEcCcccccCcccHHHHH-
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD----TEFDLLICDEGHRLKNGKSKLYEL- 523 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~----~~~~~vIlDEaH~~kn~~s~~~~~- 523 (680)
.+.++ +.++..+.|....... .....+|+|+|++.+......... .+..+||+||+|.+..........
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~i 1069 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVI 1069 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHH
T ss_pred HHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHH
Confidence 65442 2455555554332221 223578999999998654433222 247899999999997644333322
Q ss_pred HHhc--------ccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 524 MTGL--------NIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 524 l~~l--------~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
+.++ ...+.++||||-- +..|+...+.
T Consensus 1070 l~rl~~i~~~~~~~~riI~lSATl~--N~~dla~WL~ 1104 (1724)
T 4f92_B 1070 CSRMRYISSQIERPIRIVALSSSLS--NAKDVAHWLG 1104 (1724)
T ss_dssp HHHHHHHHHTTSSCCEEEEEESCBT--THHHHHHHHT
T ss_pred HHHHHHHHhhcCCCceEEEEeCCCC--CHHHHHHHhC
Confidence 2222 2346699999952 5777765543
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.6e-08 Score=107.74 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=77.4
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~v 265 (680)
..++|||||+ +|..+|.++|.+|++ ..++..++|+..............+|+|+||+.+...... + .-..|++|
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 131 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLM 131 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEE
Confidence 5689999998 889999999999985 3566666665533222111223478999999999876653 2 23458999
Q ss_pred EEcCCCCCCCCCCCCCccccCC---------CCCCceeccCCCCCCCCCCchh
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSGI---------PSLPRKSDSGIGSLPCKRPLEE 309 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~l---------~~~~r~~LTG~~~~~~~~~~~e 309 (680)
|+||||++.+..+........+ ...++++||++......+.+.+
T Consensus 132 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~ 184 (555)
T 3tbk_A 132 IFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEE 184 (555)
T ss_dssp EETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHH
T ss_pred EEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHH
Confidence 9999999998653111110111 2235788887765444444444
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-07 Score=103.42 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=85.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||+|.+.+..+.+.+ ..++.+++...+|+|||+..+.-+.. . ..+++|++|+ .+..|+.+++
T Consensus 3 ~~r~~Q~~~~~~v~~~l-----~~~~~~~~~a~TGtGKT~~~l~p~l~---~-------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGL-----RNNFLVALNAPTGSGKTLFSLLVSLE---V-------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp SCCHHHHHHHHHHHHHH-----HTTCEEEEECCTTSSHHHHHHHHHHH---H-------CSEEEEEESSGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-----HcCCcEEEECCCCccHHHHHHHHHHh---C-------CCeEEEEcCCHHHHHHHHHHH
Confidence 58999999887766543 23467888899999999987654433 1 1369999997 6779999999
Q ss_pred HHHhC--CCCeeEeecCCcc----------------------------------hhhh-----------------hhhcC
Q psy12466 452 KKWLG--LTRMCPYHVNQKN----------------------------------KAED-----------------YVYSR 478 (680)
Q Consensus 452 ~~~~~--~~~v~~~~~~~~~----------------------------------~~~~-----------------~~~~~ 478 (680)
.++.. ..++.++.+...- .... .....
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 88743 3344443331100 0000 01123
Q ss_pred CCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccC
Q psy12466 479 VSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn 515 (680)
..+|||++|..+....... ......+||+||||++-+
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 5799999999997653221 113567899999999965
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=8.5e-08 Score=108.00 Aligned_cols=116 Identities=10% Similarity=0.058 Sum_probs=75.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~v 265 (680)
..++|||||. +|..+|.++|.+|++ ..++..++++..............+|+|+||+.+...... + .-..|++|
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 134 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 134 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEE
Confidence 5689999998 899999999999986 4666666665533222111223478999999999876653 3 33568999
Q ss_pred EEcCCCCCCCCCCCCCccc--cCC--------CCCCceeccCCCCCCCCCCchh
Q psy12466 266 ICDEKSLLKPPSGNSPGND--SGI--------PSLPRKSDSGIGSLPCKRPLEE 309 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~--~~l--------~~~~r~~LTG~~~~~~~~~~~e 309 (680)
|+||||++.+... +..+ ..+ ...++++||++....-.+.+.+
T Consensus 135 ViDEah~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~ 186 (556)
T 4a2p_A 135 IFDECHNTTGNHP--YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 186 (556)
T ss_dssp EEETGGGCSTTSH--HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHH
T ss_pred EEECCcccCCcch--HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHH
Confidence 9999999988653 1111 111 2245788887654444344433
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.7e-07 Score=101.06 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=78.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||+|.+.+..+.+.+ ..++.+++...+|+|||+..+..+. .. + .+++|++|+ .+..||.+++
T Consensus 7 ~~r~~Q~~~~~~v~~~~-----~~~~~~~~~a~TGtGKT~~~l~~~~--~~-~-------~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINAL-----KHGKTLLLNAKPGLGKTVFVEVLGM--QL-K-------KKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp --CCHHHHHHHHHHHHH-----HTTCEEEEECCTTSCHHHHHHHHHH--HH-T-------CEEEEEESCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-----HcCCCEEEEcCCCCcHHHHHHHHHH--hC-C-------CcEEEEcCCHHHHHHHHHHH
Confidence 68999999887665543 2346789999999999986544432 22 1 369999997 7789999998
Q ss_pred HHHhCCCCeeEeecCCcc--------h-----------------------------------hhh----hhhcCCCCEEE
Q psy12466 452 KKWLGLTRMCPYHVNQKN--------K-----------------------------------AED----YVYSRVSPVLI 484 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~--------~-----------------------------------~~~----~~~~~~~~vvI 484 (680)
.++ + .++....+...- . ... .......+|+|
T Consensus 72 ~~l-~-~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 72 KLL-G-LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp GGG-T-CCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred Hhc-C-CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 874 2 233332221100 0 000 00113468999
Q ss_pred EeHHHHHHHHH--hhh-------ccCceEEEEcCccccc
Q psy12466 485 ISYEMLIRAYQ--TIV-------DTEFDLLICDEGHRLK 514 (680)
Q Consensus 485 ~ty~~l~~~~~--~l~-------~~~~~~vIlDEaH~~k 514 (680)
++|+.+..... .+. ....++||+||||++-
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999975432 221 2357899999999993
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-06 Score=107.94 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=106.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC---CCCccceEEEEecc-chHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY---GMPVIRKVLIVTPS-SLTSN 446 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~---~~~~~~~~LIV~P~-sll~q 446 (680)
..|.+.|..++..+++ .+.+.+++..+|.|||+.+.. ++..+...... ......++|+|+|. +|..+
T Consensus 78 ~~ln~iQs~~~~~al~--------~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e 149 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALE--------TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 149 (1724)
T ss_dssp SBCCHHHHHTHHHHHT--------CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--------CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHH
Confidence 4577889998876653 457899999999999999744 44455432211 11124579999996 78888
Q ss_pred HHHHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh----ccCceEEEEcCcccccCcccHH
Q psy12466 447 WNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV----DTEFDLLICDEGHRLKNGKSKL 520 (680)
Q Consensus 447 W~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~----~~~~~~vIlDEaH~~kn~~s~~ 520 (680)
=.++|.+.+.. .++..+.|+...... .....+|+|||++.+........ -....+||+||+|.+.+.....
T Consensus 150 ~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~ 226 (1724)
T 4f92_B 150 MVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPV 226 (1724)
T ss_dssp HHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHH
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHH
Confidence 88888777654 355556654432221 12357899999998754322111 1257899999999986532222
Q ss_pred HHH-HH-------hc-ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 521 YEL-MT-------GL-NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 521 ~~~-l~-------~l-~~~~rllLTgTP~~n~~~el~sll 551 (680)
... +. .+ ..-++++||||- .++.|+...+
T Consensus 227 lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~wL 264 (1724)
T 4f92_B 227 LEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVATFL 264 (1724)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHHHh
Confidence 221 11 11 234679999994 2577765533
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-06 Score=97.38 Aligned_cols=128 Identities=15% Similarity=0.199 Sum_probs=77.5
Q ss_pred CceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 398 EGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
...++..++|+|||.+ .+.++......+ .++||++|. .|..|+.+++. ...+. +....... .
T Consensus 20 ~~~lv~a~TGsGKT~~~~~~~l~~~~~~~-------~~~lvl~Ptr~La~Q~~~~l~----g~~v~-~~~~~~~~----~ 83 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTKRILPSIVREALLRR-------LRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVKS----D 83 (451)
T ss_dssp CEEEECCCTTSSCCTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTCSC----C
T ss_pred CeEEEECCCCCCHhhHHHHHHHHHHHhcC-------CcEEEECCCHHHHHHHHHHhc----Cceee-eeeccccc----c
Confidence 4458888999999997 455555544433 259999997 66788888774 22222 11111100 1
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhh-ccCceEEEEcCcccccCcccHHHHH-HHh---cccceEEEEeCCCCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIV-DTEFDLLICDEGHRLKNGKSKLYEL-MTG---LNIRKRILLSGTPLQN 542 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~-~~~~~~vIlDEaH~~kn~~s~~~~~-l~~---l~~~~rllLTgTP~~n 542 (680)
......+.+++.+.+........ -.++++||+||||++ +........ +.. ......++|||||...
T Consensus 84 ~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 154 (451)
T 2jlq_A 84 HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 154 (451)
T ss_dssp CCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred CCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCcc
Confidence 22345688899888765443322 236899999999987 322222111 111 1345779999999553
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-07 Score=107.82 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=74.6
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~vI 266 (680)
.++|||||+ +|+.||.++|++|++ ..++..++|+..............+|+|+||+.+...... + .-..|++||
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vV 141 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 141 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEE
Confidence 589999997 899999999999996 4566666665433222111123579999999999876653 2 234689999
Q ss_pred EcCCCCCCCCCCCCCcc---cc----C--CCCCCceeccCCCCCCC
Q psy12466 267 CDEKSLLKPPSGNSPGN---DS----G--IPSLPRKSDSGIGSLPC 303 (680)
Q Consensus 267 ~DEaH~lKN~~s~~~~a---~~----~--l~~~~r~~LTG~~~~~~ 303 (680)
+||||++++........ +. . -...++++|||+.....
T Consensus 142 iDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~ 187 (696)
T 2ykg_A 142 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 187 (696)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSS
T ss_pred EeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCc
Confidence 99999999765321111 00 0 13345788998765433
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.9e-07 Score=89.25 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCeEEEEECc-ccHHH-HHHHHHHHhCC-CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--------hhcC
Q psy12466 192 ILRVLIVTPS-SLTSN-WNDEFKKWLGL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--------IVDT 260 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~n-W~~E~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--------l~~~ 260 (680)
..++|||||. .|..+ |.+++.+|.+. .++..+.++..............+|+|+||+.+...... +.-.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~ 161 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLS 161 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGG
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchh
Confidence 4689999998 56678 99999999863 445555544322211111113478999999999776554 2235
Q ss_pred CCcEEEEcCCCCCCC
Q psy12466 261 EFDLLICDEKSLLKP 275 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN 275 (680)
.|++||+||||++..
T Consensus 162 ~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 162 DFSLIIIDECHHTNK 176 (216)
T ss_dssp GCSEEEETTC-----
T ss_pred cccEEEEECchhhcc
Confidence 689999999999964
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=98.36 E-value=5.6e-07 Score=87.80 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=63.2
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEEc
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICD 268 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~D 268 (680)
..++|||||. ++..+|.++++++++..++..++++..............+|+|+|++.+...... +.-..+++||+|
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 4579999998 8889999999999987777777666543332222224578999999998765543 233568999999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|||++.+.
T Consensus 152 Eah~~~~~ 159 (207)
T 2gxq_A 152 EADEMLSM 159 (207)
T ss_dssp SHHHHHHT
T ss_pred ChhHhhcc
Confidence 99998644
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.1e-07 Score=108.73 Aligned_cols=115 Identities=9% Similarity=0.022 Sum_probs=74.5
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~v 265 (680)
..++|||||. +|..||.++|++|++ ..++..++|+..............+|+|+||+.+...... + .-..|++|
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 375 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEE
Confidence 5689999996 589999999999986 5677777776543322222224578999999999876652 2 22358999
Q ss_pred EEcCCCCCCCCCCCCCccc-cC--------CCCCCceeccCCCCCCCCCCc
Q psy12466 266 ICDEKSLLKPPSGNSPGND-SG--------IPSLPRKSDSGIGSLPCKRPL 307 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~-~~--------l~~~~r~~LTG~~~~~~~~~~ 307 (680)
|+||||++.+..... ..+ .. -...++++||++......+.+
T Consensus 376 ViDEaH~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~ 425 (797)
T 4a2q_A 376 IFDECHNTTGNHPYN-VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNI 425 (797)
T ss_dssp EETTGGGCSTTSHHH-HHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSH
T ss_pred EEECccccCCCccHH-HHHHHHHHHhhccCCCCCeEEEEcCCccccccccH
Confidence 999999999865311 111 11 122447788876543333333
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-06 Score=95.38 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 395 LDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
..++..+++.++|+|||.+. +.++..+...+ .++||++|. .|..|+.+++.. ..+.........
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~-------~~~lvl~Ptr~La~Q~~~~l~g----~~v~~~~~~~~~--- 84 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR-------LRTAVLAPTRVVAAEMAEALRG----LPVRYQTSAVQR--- 84 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHTT-------CCEEEEECSHHHHHHHHHHTTT----SCEEECC--------
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC-------CcEEEECchHHHHHHHHHHhcC----ceEeEEeccccc---
Confidence 34577899999999999984 55565555433 259999997 677898888762 222211111000
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHH----HHHHhcccceEEEEeCCCCCC
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLY----ELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~----~~l~~l~~~~rllLTgTP~~n 542 (680)
.......+.+++...+...... ..-.++++||+||||... ..+... ..+........++|||||-..
T Consensus 85 --~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 85 --EHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGT 156 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred --CCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCcc
Confidence 0122344667777776543322 122468999999999852 111111 111122456789999999643
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=98.31 E-value=9.6e-07 Score=101.13 Aligned_cols=127 Identities=23% Similarity=0.290 Sum_probs=81.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.++..++..++|.|||.+....+. ..+ .++||++|. .+..|+.+.+.+.++.. +....+...
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll---~~g-------~~vLVl~PTReLA~Qia~~l~~~~g~~-vg~~vG~~~------ 293 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYA---AQG-------YKVLVLNPSVAATLGFGAYMSKAHGID-PNIRTGVRT------ 293 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---HTT-------CCEEEEESCHHHHHHHHHHHHHHHSCC-CEEECSSCE------
T ss_pred cCCeEEEEeCCchhHHHHHHHHHH---HCC-------CeEEEEcchHHHHHHHHHHHHHHhCCC-eeEEECcEe------
Confidence 456688999999999977654433 222 249999998 56689988888777542 333333221
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccH-HHHHHHhccc---ceEEEEeCCCCC
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK-LYELMTGLNI---RKRILLSGTPLQ 541 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~-~~~~l~~l~~---~~rllLTgTP~~ 541 (680)
.....+|+++|++.+... ..+...++++||+||||.+...... ....+..+.. ...++|||||-.
T Consensus 294 -~~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 294 -ITTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp -ECCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred -ccCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 234678999999998432 2233446899999999876322211 2223333322 235788999865
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.4e-07 Score=104.81 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=60.4
Q ss_pred CeEEEEECcc-cHHHH-HHHHHHHhCC-CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--------hhhcCC
Q psy12466 193 LRVLIVTPSS-LTSNW-NDEFKKWLGL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--------TIVDTE 261 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW-~~E~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--------~l~~~~ 261 (680)
.++|||||.. |..+| .++|++|++. .++..++++..............+|+|+||+.+..... .+.-..
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~ 136 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSD 136 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGG
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceeccc
Confidence 5789999975 88999 9999999976 67777777654433222223568999999999986442 233456
Q ss_pred CcEEEEcCCCCCCCC
Q psy12466 262 FDLLICDEKSLLKPP 276 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~ 276 (680)
|++||+||||++.+.
T Consensus 137 ~~lvViDEaH~~~~~ 151 (699)
T 4gl2_A 137 FSLIIIDECHHTNKE 151 (699)
T ss_dssp CSEEEEESGGGCBTT
T ss_pred CcEEEEECccccCcc
Confidence 999999999999554
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-07 Score=110.25 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=74.0
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~v 265 (680)
..++|||||.. |+.||.++|++|++ ..++..++|+..............+|+|+||+++...... + .-..|++|
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEE
Confidence 56899999965 89999999999986 4666677666533222212223578999999999876652 1 22358999
Q ss_pred EEcCCCCCCCCCCCCCccccC---------CCCCCceeccCCCCCCCCCCch
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSG---------IPSLPRKSDSGIGSLPCKRPLE 308 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~---------l~~~~r~~LTG~~~~~~~~~~~ 308 (680)
|+||||++.+.... ...+.. -...++++||++....-.+.+.
T Consensus 376 ViDEaH~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~ 426 (936)
T 4a2w_A 376 IFDECHNTTGNHPY-NVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIE 426 (936)
T ss_dssp EEETGGGCSTTCHH-HHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHH
T ss_pred EEECccccCCCccH-HHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHH
Confidence 99999999987541 111111 1224578888765433333333
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.5e-07 Score=103.59 Aligned_cols=100 Identities=19% Similarity=0.307 Sum_probs=68.7
Q ss_pred eEEEEECc-ccHHHHHHHHHHHh--CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWL--GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
++|||||. +|..||.++|++|. +..++..++++...... .....+|+|+||+.+...... .-..|++||+||+
T Consensus 159 ~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~ 234 (510)
T 2oca_A 159 KILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDEC 234 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETG
T ss_pred eEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECC
Confidence 89999997 68899999999994 33345555554332222 235678999999987654221 1235899999999
Q ss_pred CCCCCCCCCCCccccCC-CCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGI-PSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l-~~~~r~~LTG~~ 299 (680)
|++.+.. ..+.+..+ .+..+++|||+.
T Consensus 235 H~~~~~~--~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 235 HLATGKS--ISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp GGCCHHH--HHHHGGGCTTCCEEEEEESCG
T ss_pred cCCCccc--HHHHHHhcccCcEEEEEEeCC
Confidence 9999843 33444566 445677888765
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.3e-07 Score=103.70 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=53.1
Q ss_pred CCCeEEEEEC-cccHHHHH-HHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH------HhhhcCCC
Q psy12466 191 YILRVLIVTP-SSLTSNWN-DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY------QTIVDTEF 262 (680)
Q Consensus 191 ~~~~~LIV~P-~sl~~nW~-~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~------~~l~~~~~ 262 (680)
..+++||||| .+|..||. ++|++|.+ .+..+.+. ......+|+|+||+.+.... ..+....|
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~--~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGD--ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCS--SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcch--hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 4579999999 77889999 88888754 22222211 12245789999999997753 23444569
Q ss_pred cEEEEcCCCCCCCCCCCCC-ccccCCCCCCceeccCCC
Q psy12466 263 DLLICDEKSLLKPPSGNSP-GNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 263 ~~vI~DEaH~lKN~~s~~~-~a~~~l~~~~r~~LTG~~ 299 (680)
++||+||||++.+.....+ ..+..+....+++|||+.
T Consensus 304 ~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP 341 (590)
T 3h1t_A 304 DLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATP 341 (590)
T ss_dssp SEEEESCCC---------CHHHHHHSTTSEEEEEESSC
T ss_pred CEEEEECCccccccchHHHHHHHHhCCcceEEEecccc
Confidence 9999999999998754444 444456667789998774
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.7e-06 Score=92.48 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 396 DLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.++..++..++|+|||+++ ++++..+...+ .++||++|. .|..|+.+++..+ .+.. ....-..
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~-------~~~lil~Ptr~La~Q~~~~l~~~----~v~~-~~~~~~~--- 71 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRR-------LRTLVLAPTRVVLSEMKEAFHGL----DVKF-HTQAFSA--- 71 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTTTS----CEEE-ESSCCCC---
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC-------CeEEEEcchHHHHHHHHHHHhcC----CeEE-eccccee---
Confidence 4678999999999999996 55555454443 248999997 6778998887743 2221 1111000
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhh-hccCceEEEEcCcccccCcccHHH-HHHHhc---ccceEEEEeCCCCCC
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTI-VDTEFDLLICDEGHRLKNGKSKLY-ELMTGL---NIRKRILLSGTPLQN 542 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l-~~~~~~~vIlDEaH~~kn~~s~~~-~~l~~l---~~~~rllLTgTP~~n 542 (680)
......-+-..+...+....... .-.++++||+||||++ +...... ..+..+ .....++|||||..+
T Consensus 72 -v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 72 -HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGT 143 (440)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred -ccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCch
Confidence 11111223344444443222111 1246899999999998 3222111 112222 356789999999665
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=98.18 E-value=6.5e-06 Score=94.30 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=81.1
Q ss_pred CCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 396 DLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.++..|+..++|+|||.+. +.++..+...+ .++||++|. .|..|+.+++.. ..+. +....-.
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~-------~~vLvl~PtreLa~Qi~~~l~~----~~v~-~~~~~l~---- 248 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVREALKRR-------LRTLILAPTRVVAAEMEEALRG----LPIR-YQTPAVK---- 248 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTTT----SCEE-ECCTTSS----
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC-------CeEEEEcChHHHHHHHHHHhcC----Ccee-Eecccce----
Confidence 4678999999999999984 66666665533 259999997 677888877762 2232 2221100
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCccc--HHHHHHHhc--ccceEEEEeCCCCCC
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKS--KLYELMTGL--NIRKRILLSGTPLQN 542 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s--~~~~~l~~l--~~~~rllLTgTP~~n 542 (680)
........+.++++..+...... ..-.++++||+||||++ +... .....+..+ .....++|||||-..
T Consensus 249 ~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 249 SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 321 (618)
T ss_dssp CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchh
Confidence 11223445777888877653322 12346899999999998 2221 112222222 345679999999544
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.2e-06 Score=96.69 Aligned_cols=131 Identities=14% Similarity=0.189 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 396 DLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.++..++..++|+|||+++ ++++..+...+ .++||++|. .|..|+.+.+..+ .+. +.... ..
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~-------~~~lilaPTr~La~Q~~~~l~~~----~i~-~~~~~---l~- 303 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKR-------LRTAVLAPTRVVAAEMAEALRGL----PVR-YLTPA---VQ- 303 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTTTS----CCE-ECCC-------
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CcEEEEccHHHHHHHHHHHHhcC----Cee-eeccc---cc-
Confidence 5678999999999999995 55555545433 259999998 6779998888754 121 11110 00
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHHHHHHhc---ccceEEEEeCCCCCC
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLYELMTGL---NIRKRILLSGTPLQN 542 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l---~~~~rllLTgTP~~n 542 (680)
.......-+-+.+...+....-. ..-.++++||+||||++..........+..+ .....++|||||...
T Consensus 304 ~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 304 REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGT 376 (673)
T ss_dssp CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChh
Confidence 01112233445566555332221 1224689999999999821111122222222 356789999999654
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-06 Score=91.28 Aligned_cols=108 Identities=10% Similarity=-0.015 Sum_probs=68.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcc-hhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNK-AEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
..++|||||. +|..+|.+++.++++...+.+....+... ..........+|+|+||+.+...... +.-..+++||+
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 4589999997 66799999999998754444333333222 11111223679999999999776543 22356899999
Q ss_pred cCCCCCCCCCCC--CCccccCCCCCC-ceeccCCC
Q psy12466 268 DEKSLLKPPSGN--SPGNDSGIPSLP-RKSDSGIG 299 (680)
Q Consensus 268 DEaH~lKN~~s~--~~~a~~~l~~~~-r~~LTG~~ 299 (680)
||||.+.+.... ..+.+..+.... .+++|++.
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 188 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACNKDKRILLFSATM 188 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSC
T ss_pred eCchHhhhhchHHHHHHHHHhCCCCceEEEEeecc
Confidence 999999775421 122223333333 46666653
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-06 Score=86.61 Aligned_cols=106 Identities=11% Similarity=0.027 Sum_probs=68.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
..++|||||. .|..+|.++++++.. ..++..++++....... ......+|+|+|++.+...... +.-..++++
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~l 170 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDK-TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLF 170 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHH-HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHH-HhccCCCEEEECHHHHHHHHhcCCcccccCCEE
Confidence 4589999997 788999999999973 34556665554322221 1224679999999999775542 222458899
Q ss_pred EEcCCCCCCCCC---CCCCccccCCCCCC-ceeccCC
Q psy12466 266 ICDEKSLLKPPS---GNSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~---s~~~~a~~~l~~~~-r~~LTG~ 298 (680)
|+||||++-+.. ......+..+.... .+++|++
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT 207 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSAT 207 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEec
Confidence 999999996542 11122333444333 4566654
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.11 E-value=5.7e-06 Score=80.53 Aligned_cols=85 Identities=8% Similarity=0.093 Sum_probs=58.9
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
..++|||||. .|..+|.++++++.. ..++..++++..............+|+|+|++.+...... +.-..++++
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~l 150 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMI 150 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEE
Confidence 3479999997 567899999999974 3445555554433222222235678999999998665542 222468999
Q ss_pred EEcCCCCCCCC
Q psy12466 266 ICDEKSLLKPP 276 (680)
Q Consensus 266 I~DEaH~lKN~ 276 (680)
|+||||++-..
T Consensus 151 ViDEah~~~~~ 161 (206)
T 1vec_A 151 VLDEADKLLSQ 161 (206)
T ss_dssp EEETHHHHTST
T ss_pred EEEChHHhHhh
Confidence 99999998653
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=98.09 E-value=3.9e-06 Score=87.45 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=43.8
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-------c------hhhHHHHHHHHHHhccCccccCCC
Q psy12466 616 LNSKRETLLVCRATPLQQSLYLRCVEYWDARA-------S------RDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 616 LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-------~------~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
-|.+.|++++|+||+.|+++|+.++......+ + .....+.+++||+|||||+|+.+.
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~ 89 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDH 89 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccc
Confidence 48999999999999999999999986432211 1 124567899999999999999643
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-06 Score=86.36 Aligned_cols=106 Identities=16% Similarity=0.079 Sum_probs=69.2
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~v 265 (680)
..++|||||. .|..+|.++++++... .++..++++...... .......+|+|+|++.+...... +.-..+++|
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHH-HHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHH-HHhCCCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 3579999997 7889999999999854 445555554432222 11224679999999999776543 233568999
Q ss_pred EEcCCCCCCCCC--CCCCccccCCCCCC-ceeccCC
Q psy12466 266 ICDEKSLLKPPS--GNSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~--s~~~~a~~~l~~~~-r~~LTG~ 298 (680)
|+||||++.+.. ......+..+.... .+++|++
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 211 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSAT 211 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESS
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEee
Confidence 999999987653 22233344444343 5666654
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.08 E-value=4.7e-06 Score=82.26 Aligned_cols=107 Identities=11% Similarity=0.012 Sum_probs=66.8
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCC------CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCC
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGL------TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEF 262 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~------~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~ 262 (680)
..++|||||. .|..+|.++++++... .++..++++..............+|+|+|++.+...... +.-..+
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 151 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTA 151 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcc
Confidence 3589999997 6789999999999853 344444444322222122224578999999999765542 222458
Q ss_pred cEEEEcCCCCCCCCC--CCCCccccCCCCCC-ceeccCC
Q psy12466 263 DLLICDEKSLLKPPS--GNSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 263 ~~vI~DEaH~lKN~~--s~~~~a~~~l~~~~-r~~LTG~ 298 (680)
+++|+||||++.+.. ......+..+.... .+++|++
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 190 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSAT 190 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecC
Confidence 899999999987542 11222333444333 5566654
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.8e-06 Score=89.18 Aligned_cols=85 Identities=9% Similarity=0.157 Sum_probs=61.1
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC---CCCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDL 264 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~ 264 (680)
..++|||||. .|..+|.+++++|.. ..++..++++...... ........+|+|+||+.+...... +.-..+++
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 155 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKH 155 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSE
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCE
Confidence 3589999998 788999999999973 4556666655432222 222334578999999999775543 33357999
Q ss_pred EEEcCCCCCCCC
Q psy12466 265 LICDEKSLLKPP 276 (680)
Q Consensus 265 vI~DEaH~lKN~ 276 (680)
||+||||++.+.
T Consensus 156 vViDEaH~~~~~ 167 (391)
T 1xti_A 156 FILDECDKMLEQ 167 (391)
T ss_dssp EEECSHHHHTSS
T ss_pred EEEeCHHHHhhc
Confidence 999999999764
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.5e-06 Score=83.80 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=68.4
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh---hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l---~~~~~~~v 265 (680)
..++|||||. .|..+|.++|+++... .++..++++..............+|+|+|++.+....... .-..+++|
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 3479999997 6678999999999752 4555555544332222223356799999999997765432 23458899
Q ss_pred EEcCCCCCCCCCC--CCCccccCCCCCC-ceeccCC
Q psy12466 266 ICDEKSLLKPPSG--NSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~s--~~~~a~~~l~~~~-r~~LTG~ 298 (680)
|+||||++.+..- ...+.+..+.... .+++|++
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT 226 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSAT 226 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESS
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEecc
Confidence 9999999876421 1223333343333 4556544
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.04 E-value=5.1e-06 Score=81.90 Aligned_cols=83 Identities=10% Similarity=0.169 Sum_probs=59.0
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC---CCCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
.++|||||. .|..+|.++++++.. ..++..++++...... ........+|+|+|++.+...... +.-..+++|
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~l 162 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 162 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEE
Confidence 489999997 778999999999973 4566666665432221 222234568999999999765542 223568999
Q ss_pred EEcCCCCCCC
Q psy12466 266 ICDEKSLLKP 275 (680)
Q Consensus 266 I~DEaH~lKN 275 (680)
|+||||++-+
T Consensus 163 ViDEah~~~~ 172 (220)
T 1t6n_A 163 ILDECDKMLE 172 (220)
T ss_dssp EEESHHHHHS
T ss_pred EEcCHHHHhc
Confidence 9999999854
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-06 Score=91.06 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=66.5
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI 266 (680)
..++|||||. +|..+|.+++.++++.. ++..++++..... ........+|+|+||+.+..... .+....+++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE-DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHH-HHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHH-HHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 4589999997 67889999999998643 3444444332211 11111257899999999876554 23335799999
Q ss_pred EcCCCCCCCCC--CCCCccccCCCCC-CceeccCC
Q psy12466 267 CDEKSLLKPPS--GNSPGNDSGIPSL-PRKSDSGI 298 (680)
Q Consensus 267 ~DEaH~lKN~~--s~~~~a~~~l~~~-~r~~LTG~ 298 (680)
+||||++.+.. ....+.+..+... ..+++|++
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 99999985432 1122223333333 35666654
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=98.04 E-value=8e-06 Score=80.65 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=55.0
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||. .|..+|.+++.+++... ++..++++...... .......+|+|+|++.+...... +.-..+++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED-AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH-HhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 4589999998 67789999999998543 34444443322111 11123378999999998765442 2234589999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||++.+.
T Consensus 161 iDEah~~~~~ 170 (224)
T 1qde_A 161 LDEADEMLSS 170 (224)
T ss_dssp EETHHHHHHT
T ss_pred EcChhHHhhh
Confidence 9999998654
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.9e-06 Score=83.36 Aligned_cols=107 Identities=7% Similarity=0.012 Sum_probs=62.8
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
..++|||||. .|..+|.++++++.... ++..++++...... ........+|+|+|++.+...... +.-..+++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 4589999997 67889999999998533 33444443322111 122223478999999998765442 233458999
Q ss_pred EEcCCCCCCCCC--CCCCccccCCCCCCc-eeccCC
Q psy12466 266 ICDEKSLLKPPS--GNSPGNDSGIPSLPR-KSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~--s~~~~a~~~l~~~~r-~~LTG~ 298 (680)
|+||||++-+.. ......+..+....+ +++|.+
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 999999885432 223333444444443 445543
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-05 Score=85.68 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=58.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCCe--eEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTRM--CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||. .|..+|.++++++++...+ ..++++..............+|+|+|++.+...... ..-..+++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 3479999997 6788999999999864433 344333322222222335678999999998765442 2235689999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||++.+.
T Consensus 169 iDEaH~~~~~ 178 (400)
T 1s2m_A 169 MDEADKMLSR 178 (400)
T ss_dssp EESHHHHSSH
T ss_pred EeCchHhhhh
Confidence 9999988654
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=8e-06 Score=88.12 Aligned_cols=107 Identities=8% Similarity=0.023 Sum_probs=67.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCC--eeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTR--MCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
..++|||||. .|..+|.+++++++.... +....++...... ........+|+|+|++.+...... +....+++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 4579999997 578899999999974333 3333333221111 122235678999999998765543 334568999
Q ss_pred EEcCCCCCCCCC--CCCCccccCCCCCC-ceeccCC
Q psy12466 266 ICDEKSLLKPPS--GNSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~--s~~~~a~~~l~~~~-r~~LTG~ 298 (680)
|+||||++.+.. ......+..+.... .+++|++
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 999999986543 22333444454444 4555544
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=97.90 E-value=9.7e-06 Score=87.59 Aligned_cols=107 Identities=9% Similarity=-0.031 Sum_probs=67.3
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhCCCCeeE--EeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLGLTRMCP--YHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||.. |..+|.+++.+|.....+.+ ++++..............+|+|+|++.+...... +....+++||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 45899999974 78899999999985444433 3333322221112223568999999998765543 3345689999
Q ss_pred EcCCCCCCCCCCC--CCccccCCCCC-CceeccCC
Q psy12466 267 CDEKSLLKPPSGN--SPGNDSGIPSL-PRKSDSGI 298 (680)
Q Consensus 267 ~DEaH~lKN~~s~--~~~a~~~l~~~-~r~~LTG~ 298 (680)
+||||++.+..-. ....+..+... ..+++|++
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 219 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT 219 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred EccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcC
Confidence 9999998865421 22223333333 35566655
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.6e-05 Score=88.18 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=52.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHH-HHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI-WTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali-~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
+.||+|++.+..+.+.+. .++.+++...+|+|||+..+.-+ ..+...+ .+++|++|+ .+..|+.++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~-----~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~-------~kvli~t~T~~l~~Qi~~e 70 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQ-----KSYGVALESPTGSGKTIMALKSALQYSSERK-------LKVLYLVRTNSQEEQVIKE 70 (620)
T ss_dssp --CHHHHHHHHHHHHHHH-----HSSEEEEECCTTSCHHHHHHHHHHHHHHHHT-------CEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-----cCCCEEEECCCCCCHHHHHHHHHHHhhhhcC-------CeEEEECCCHHHHHHHHHH
Confidence 468999999887766532 35778999999999999876543 3333322 369999997 677999999
Q ss_pred HHHHh
Q psy12466 451 FKKWL 455 (680)
Q Consensus 451 ~~~~~ 455 (680)
+.++.
T Consensus 71 l~~l~ 75 (620)
T 4a15_A 71 LRSLS 75 (620)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=9.9e-05 Score=86.71 Aligned_cols=149 Identities=17% Similarity=0.103 Sum_probs=84.5
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
+.|++++..++. .+...++..++|.|||.+.-.++........ ....++|++|. .+..|+.+.+.+.
T Consensus 96 ~~q~~~i~~~l~--------~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 96 HAQRDEFLKLYQ--------NNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp GGGHHHHHHHHH--------HCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEecCchHHHHHHHHHHHHHH
Confidence 367766655544 2356899999999999954444322211110 01358999997 5557777777666
Q ss_pred hCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCccc-ccCcc--cHHHHHHHhc-cc
Q psy12466 455 LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHR-LKNGK--SKLYELMTGL-NI 529 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~-~kn~~--s~~~~~l~~l-~~ 529 (680)
.+. .+....+.. .+.. .......+|+++|.+.+.+.... ..-.++++||+||+|. .-+.. -...+.+... ..
T Consensus 164 ~~~-~v~~~vG~~-i~~~-~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 164 MDV-KLGEEVGYS-IRFE-NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp TTC-CBTTTEEEE-ETTE-EECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred hCC-chhheecce-eccc-cccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence 542 111111110 0000 01123578999999988765432 2234689999999995 22211 1112222222 34
Q ss_pred ceEEEEeCCC
Q psy12466 530 RKRILLSGTP 539 (680)
Q Consensus 530 ~~rllLTgTP 539 (680)
...++||||+
T Consensus 241 ~~iIl~SAT~ 250 (773)
T 2xau_A 241 LKIIIMSATL 250 (773)
T ss_dssp CEEEEEESCS
T ss_pred ceEEEEeccc
Confidence 5679999999
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.82 E-value=2.2e-05 Score=79.20 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=58.6
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.++|||||. .|..+|.++++++.... ++..++++..............+|+|+|++.+...... +.-..+++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 489999997 77899999999998543 34444444433222222234678999999999776543 22245789999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 181 DEah~~~~~ 189 (253)
T 1wrb_A 181 DEADRMLDM 189 (253)
T ss_dssp ETHHHHHHT
T ss_pred eCHHHHHhC
Confidence 999998654
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00026 Score=82.30 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=86.3
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-H---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-T---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l---~qW~~ 449 (680)
..|-|..|+--+++ |-|....+|.|||+++..-+......+ ..++||||+-- . .+|..
T Consensus 80 Pt~VQ~~~ip~Llq-----------G~IaeakTGeGKTLvf~Lp~~L~aL~G-------~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 80 HFDVQLIGGAVLHE-----------GKIAEMKTGEGKTLVATLAVALNALTG-------KGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp CCHHHHHHHHHHHT-----------TSEEECCSTHHHHHHHHHHHHHHHTTC-------SCCEEEESSHHHHHHHHHHHH
T ss_pred CcHHHHhhcccccC-----------CceeeccCCCchHHHHHHHHHHHHHhC-------CCEEEEeCCHHHHHHHHHHHH
Confidence 45668877765542 237788999999997644332222222 13899999854 4 45777
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-HHHHh--------hhcc---CceEEEEcCcccccCcc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-RAYQT--------IVDT---EFDLLICDEGHRLKNGK 517 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-~~~~~--------l~~~---~~~~vIlDEaH~~kn~~ 517 (680)
.+.++++ +++.+..+.......... ...+|++.|...+. ..+.. +... ...++|+||+|.+-..
T Consensus 142 ~l~~~lG-Lsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD- 217 (997)
T 2ipc_A 142 PVYRGLG-LSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID- 217 (997)
T ss_dssp HHHHTTT-CCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS-
T ss_pred HHHHhcC-CeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh-
Confidence 7777665 455555444333222222 24799999998883 22211 1223 6789999999964211
Q ss_pred cHHHHHHHhcccceEEEEeCCCCCCCHHHHHHH
Q psy12466 518 SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 518 s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sl 550 (680)
.+..-+++|| |.... ..+|..
T Consensus 218 ----------eartPLIISg-p~~~~-~~lY~~ 238 (997)
T 2ipc_A 218 ----------EARTPLIISG-PAEKA-TDLYYK 238 (997)
T ss_dssp ----------STTSCEEEEE-SCSSC-HHHHHH
T ss_pred ----------CCCCCeeeeC-CCccc-hHHHHH
Confidence 2233489999 88776 454443
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.4e-05 Score=80.44 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=58.0
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.++|||||. +|..+|.+++++|.+.. ++..++++... ..........+|+|+||+.+...... +.-..|++||+
T Consensus 57 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 57 MKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPY-KAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCH-HHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcch-HHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEE
Confidence 578999997 67899999999998543 44444443322 11112223489999999999876542 22356899999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++.+.
T Consensus 136 DEah~~~~~ 144 (337)
T 2z0m_A 136 DEADLMFEM 144 (337)
T ss_dssp ESHHHHHHT
T ss_pred EChHHhhcc
Confidence 999998654
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.1e-05 Score=79.80 Aligned_cols=82 Identities=9% Similarity=0.112 Sum_probs=56.4
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEEc
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICD 268 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~D 268 (680)
..++|||||.. |..+|.++++++.....+.+....+...... .....+|+|+|++.+...... +.-..+++||+|
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 45899999976 7789999999997544443333332221111 123578999999999765542 223569999999
Q ss_pred CCCCCCC
Q psy12466 269 EKSLLKP 275 (680)
Q Consensus 269 EaH~lKN 275 (680)
|||++.+
T Consensus 153 Eah~~~~ 159 (395)
T 3pey_A 153 EADNMLD 159 (395)
T ss_dssp THHHHHH
T ss_pred ChhhhcC
Confidence 9998875
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=6e-05 Score=74.61 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=56.5
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHh-CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
..++|||||.. |..+|.++++++. ...++..++++..............+|+|+|++.+...... +.-..+++||+
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 45799999975 6789999999996 33455555554433222222235579999999999765432 22245899999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 174 DEah~~~~~ 182 (228)
T 3iuy_A 174 DEADKMLDM 182 (228)
T ss_dssp CCHHHHHHT
T ss_pred ECHHHHhcc
Confidence 999987654
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0001 Score=73.76 Aligned_cols=83 Identities=22% Similarity=0.187 Sum_probs=55.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCee--EEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHhh----hcCCCcE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMC--PYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDL 264 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~l----~~~~~~~ 264 (680)
.++|||||. .|..+|.+++.+++....+. .++++...... ........+|+|+|++.+......- .-..+++
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 479999997 56789999999998643333 33332211111 1122345789999999997765432 2245889
Q ss_pred EEEcCCCCCCC
Q psy12466 265 LICDEKSLLKP 275 (680)
Q Consensus 265 vI~DEaH~lKN 275 (680)
||+||||++-.
T Consensus 179 lViDEah~~~~ 189 (245)
T 3dkp_A 179 LVVDESDKLFE 189 (245)
T ss_dssp EEESSHHHHHH
T ss_pred EEEeChHHhcc
Confidence 99999999854
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00029 Score=81.23 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.++..++..++|.|||..++..+. ... ..+|++|. .|..|..+.+.+. +..+....|.......
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~---~~~--------~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~iv~-- 218 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYF---SAK--------SGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERVTVQ-- 218 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH---HSS--------SEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEECCS--
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH---hcC--------CeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeEEec--
Confidence 446789999999999995544332 222 25999997 6668998888875 3455555544332110
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc--cHHHHHHHhcc--cceEEEEeCC
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK--SKLYELMTGLN--IRKRILLSGT 538 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~--s~~~~~l~~l~--~~~rllLTgT 538 (680)
......++++++.+.+. ....+++||+||||++.+.. ......+..+. ..+.+++|+|
T Consensus 219 TpGr~~~il~~T~e~~~------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 219 PNGKQASHVSCTVEMCS------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp TTCCCCSEEEEEGGGCC------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred CCCcccceeEecHhHhh------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 01123678888876542 23467999999999985432 33345555554 3345777787
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00059 Score=79.48 Aligned_cols=120 Identities=21% Similarity=0.245 Sum_probs=74.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~ 449 (680)
.+|-|..|+--++ .|.|....+|.|||+.+..-+......+ ..++||||+ .|. .+|..
T Consensus 112 P~~VQ~~~ip~Ll-----------~G~Iaem~TGeGKTLa~~LP~~l~aL~g-------~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 112 PFDVQVMGAAALH-----------LGNVAEMKTGEGKTLTCVLPAYLNALAG-------NGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp CCHHHHHHHHHHH-----------TTEEEECCTTSCHHHHTHHHHHHHHTTT-------SCEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhHh-----------cCCEEEecCCCccHHHHHHHHHHHHHhC-------CCeEEEeCCHHHHHHHHHHHH
Confidence 3445666665443 2448889999999997543332111222 249999998 444 66888
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-HHHH--------hhhccCceEEEEcCccccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-RAYQ--------TIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-~~~~--------~l~~~~~~~vIlDEaH~~k 514 (680)
.+.+|++ +++.++.+..........+ ..+|++.|...+. .... .+....+.++|+|||+.+-
T Consensus 174 ~l~~~lG-Lsv~~i~gg~~~~~r~~~y--~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 174 RVHRFLG-LQVGVILATMTPDERRVAY--NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp HHHHHTT-CCEEECCTTCCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred HHHhhcC-CeEEEEeCCCCHHHHHHhc--CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 8888876 4555554443332222222 4789999998873 2111 2333578999999999864
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=7e-05 Score=81.12 Aligned_cols=82 Identities=12% Similarity=0.245 Sum_probs=60.7
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC-CCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI 266 (680)
.++|||||. .|..+|.++|++|++ ..++..++++...... ........+|+|+|.+.+......+....+++||
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iV 144 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 144 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEE
Confidence 579999997 678999999999976 3455666555432111 1222344799999999998776666667899999
Q ss_pred EcCCCCCC
Q psy12466 267 CDEKSLLK 274 (680)
Q Consensus 267 ~DEaH~lK 274 (680)
+||||.+-
T Consensus 145 iDEaH~~~ 152 (414)
T 3oiy_A 145 VDDVDAVL 152 (414)
T ss_dssp ESCHHHHH
T ss_pred EeChHhhh
Confidence 99999763
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=79.32 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=58.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.++|||||. .|..+|.+++++++... ++..++++..............+|+|+|++.+...... +.-..+++||+
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVL 181 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEE
Confidence 479999997 67889999999998543 44444444332222222234578999999999776543 23356899999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 182 DEah~~~~~ 190 (417)
T 2i4i_A 182 DEADRMLDM 190 (417)
T ss_dssp SSHHHHHHT
T ss_pred EChhHhhcc
Confidence 999997654
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00047 Score=79.40 Aligned_cols=70 Identities=29% Similarity=0.391 Sum_probs=54.4
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
+...|-+.|++||...+.. ..-.|+.-.+|+|||.+.+.++..+...+. ++||++|+ ..+.+-.
T Consensus 186 ~~~~LN~~Q~~AV~~al~~--------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~-------~ILv~a~TN~AvD~i~ 250 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALSQ--------KELAIIHGPPGTGKTTTVVEIILQAVKQGL-------KVLCCAPSNIAVDNLV 250 (646)
T ss_dssp SSTTCCHHHHHHHHHHHHC--------SSEEEEECCTTSCHHHHHHHHHHHHHHTTC-------CEEEEESSHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcC--------CCceEEECCCCCCHHHHHHHHHHHHHhCCC-------eEEEEcCchHHHHHHH
Confidence 4567999999999987642 234788889999999999999988887653 59999997 4557766
Q ss_pred HHHHHH
Q psy12466 449 DEFKKW 454 (680)
Q Consensus 449 ~E~~~~ 454 (680)
+.+...
T Consensus 251 erL~~~ 256 (646)
T 4b3f_X 251 ERLALC 256 (646)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 666553
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=97.47 E-value=3e-05 Score=93.44 Aligned_cols=104 Identities=12% Similarity=0.043 Sum_probs=67.8
Q ss_pred CCeEEEEEC-cccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh----hcCCCcEEE
Q psy12466 192 ILRVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P-~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l----~~~~~~~vI 266 (680)
..++||||| ..|..||.++|.+|.+. .+..+.+.............+|+|+||..+....... .-..+++||
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~---~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvI 406 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPD---SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFI 406 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTT---CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEE
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhccc---ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEE
Confidence 469999999 77889999999999863 1111111112222222346789999999998764421 112689999
Q ss_pred EcCCCCCCCCCCCCCccc-cCCCCCCceeccCCCC
Q psy12466 267 CDEKSLLKPPSGNSPGND-SGIPSLPRKSDSGIGS 300 (680)
Q Consensus 267 ~DEaH~lKN~~s~~~~a~-~~l~~~~r~~LTG~~~ 300 (680)
+|||||..... ..+.+ ..+....+++|||+..
T Consensus 407 iDEAHrs~~~~--~~~~I~~~~p~a~~lgfTATP~ 439 (1038)
T 2w00_A 407 FDECHRSQFGE--AQKNLKKKFKRYYQFGFTGTPI 439 (1038)
T ss_dssp EESCCTTHHHH--HHHHHHHHCSSEEEEEEESSCC
T ss_pred EEccchhcchH--HHHHHHHhCCcccEEEEeCCcc
Confidence 99999975321 22333 3355567889998764
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=80.40 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=60.5
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||+ .|..||.++++++... .++..++++..............+|+|+|++.+...... +.-..+++||
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 3489999997 5788999999999853 345555555433222222235679999999999766542 2235689999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||++-+.
T Consensus 209 lDEah~~~~~ 218 (434)
T 2db3_A 209 LDEADRMLDM 218 (434)
T ss_dssp EETHHHHTST
T ss_pred EccHhhhhcc
Confidence 9999998765
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00037 Score=80.89 Aligned_cols=121 Identities=18% Similarity=0.105 Sum_probs=75.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~ 448 (680)
..+|-|..|+--++ .|.|.-..+|.|||+.++.-+......+ ..++||||+- |. .+|.
T Consensus 74 ~p~~VQ~~~i~~ll-----------~G~Iaem~TGsGKTlaf~LP~l~~~l~g-------~~vlVltPTreLA~Q~~e~~ 135 (853)
T 2fsf_A 74 RHFDVQLLGGMVLN-----------ERCIAEMRTGEGKTLTATLPAYLNALTG-------KGVHVVTVNDYLAQRDAENN 135 (853)
T ss_dssp CCCHHHHHHHHHHH-----------SSEEEECCTTSCHHHHHHHHHHHHHTTS-------SCCEEEESSHHHHHHHHHHH
T ss_pred CCChHHHhhccccc-----------CCeeeeecCCchHHHHHHHHHHHHHHcC-------CcEEEEcCCHHHHHHHHHHH
Confidence 35567877776553 2337778999999987644332222222 2389999984 44 5577
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-HHHH--------hhhccCceEEEEcCccccc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-RAYQ--------TIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-~~~~--------~l~~~~~~~vIlDEaH~~k 514 (680)
..+.++++ +++.++.+.......... ...+|++.|...+. .... .+......++|+||||++-
T Consensus 136 ~~l~~~lg-l~v~~i~GG~~~~~r~~~--~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 136 RPLFEFLG-LTVGINLPGMPAPAKREA--YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp HHHHHHTT-CCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred HHHHHhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 77777765 455555544333222222 24789999998873 2221 1333578999999999764
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00038 Score=80.96 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=74.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~ 449 (680)
..|-|..|+--+++ |.|....+|.|||+.+..-+......+ ..++||||+ .|. .+|..
T Consensus 84 pt~VQ~~~ip~ll~-----------G~Iaea~TGeGKTlaf~LP~~l~aL~g-------~~vlVltptreLA~qd~e~~~ 145 (844)
T 1tf5_A 84 PFKVQLMGGVALHD-----------GNIAEMKTGEGKTLTSTLPVYLNALTG-------KGVHVVTVNEYLASRDAEQMG 145 (844)
T ss_dssp CCHHHHHHHHHHHT-----------TSEEECCTTSCHHHHHHHHHHHHHTTS-------SCEEEEESSHHHHHHHHHHHH
T ss_pred CcHHHHHhhHHHhC-----------CCEEEccCCcHHHHHHHHHHHHHHHcC-------CCEEEEeCCHHHHHHHHHHHH
Confidence 45567777655532 238889999999997654332222222 248999998 444 45777
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-----HHH----HhhhccCceEEEEcCccccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-----RAY----QTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-----~~~----~~l~~~~~~~vIlDEaH~~k 514 (680)
.+.+|++ +++.++.+.......... ...+|++.|...+. ..+ ..+......++|+|||+.+-
T Consensus 146 ~l~~~lg-l~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 146 KIFEFLG-LTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp HHHHHTT-CCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred HHHhhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 7888775 455555444333222222 24789999998883 221 12333568899999999863
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00024 Score=72.19 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh---hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l---~~~~~~~v 265 (680)
..++|||||. .|..+|.+++++++... .+..+.++..............+|+|+|.+.+....... .-..+++|
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 3479999997 67789999999998533 334444433222222212234789999999997655432 22458999
Q ss_pred EEcCCCCCCCC
Q psy12466 266 ICDEKSLLKPP 276 (680)
Q Consensus 266 I~DEaH~lKN~ 276 (680)
|+||||++-+.
T Consensus 206 ViDEah~l~~~ 216 (262)
T 3ly5_A 206 VIDEADRILDV 216 (262)
T ss_dssp EECSHHHHHHT
T ss_pred EEcChHHHhhh
Confidence 99999997653
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00026 Score=70.81 Aligned_cols=85 Identities=12% Similarity=0.005 Sum_probs=57.8
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||.. |..+|.+++++++. ..++..++++..............+|+|+|.+.+...... +.-..++++|
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 45799999964 67899999999863 2455555554433222222234578999999999765542 2234688999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||++-+.
T Consensus 182 iDEah~l~~~ 191 (242)
T 3fe2_A 182 LDEADRMLDM 191 (242)
T ss_dssp ETTHHHHHHT
T ss_pred EeCHHHHhhh
Confidence 9999997653
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00036 Score=74.89 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=54.5
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~v 265 (680)
.++|||||.. |..+|.++++++.. ...+....++...... .....+|+|+|++.+...... +.-..+++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 4799999976 56789888988863 3444444443322111 124568999999999776543 222468999
Q ss_pred EEcCCCCCCC
Q psy12466 266 ICDEKSLLKP 275 (680)
Q Consensus 266 I~DEaH~lKN 275 (680)
|+||||++-.
T Consensus 173 ViDEah~~~~ 182 (412)
T 3fht_A 173 VLDEADVMIA 182 (412)
T ss_dssp EEETHHHHHS
T ss_pred EEeCHHHHhh
Confidence 9999998754
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0018 Score=73.28 Aligned_cols=131 Identities=20% Similarity=0.199 Sum_probs=82.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
..|-+.|++++..+.. .+..++.-..|+|||.++.+++..+...+. ++++++|+........+.
T Consensus 188 ~~L~~~Q~~Av~~~~~---------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~-------~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAG---------HRLVVLTGGPGTGKSTTTKAVADLAESLGL-------EVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCCHHHHHHHHHHTT---------CSEEEEECCTTSCHHHHHHHHHHHHHHTTC-------CEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------eEEEecCcHHHHHHhHhh
Confidence 4578899999987742 367888999999999998888887776552 589999987665544442
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccce
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~ 531 (680)
. +. ....++. ...... . .+. ...-....+++||+||||.+. .......+..+....
T Consensus 252 ~---~~-~a~Tih~--------ll~~~~-~----~~~-----~~~~~~~~~dvlIIDEasml~--~~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 252 T---GR-TASTVHR--------LLGYGP-Q----GFR-----HNHLEPAPYDLLIVDEVSMMG--DALMLSLLAAVPPGA 307 (574)
T ss_dssp H---TS-CEEEHHH--------HTTEET-T----EES-----CSSSSCCSCSEEEECCGGGCC--HHHHHHHHTTSCTTC
T ss_pred h---cc-cHHHHHH--------HHcCCc-c----hhh-----hhhcccccCCEEEEcCccCCC--HHHHHHHHHhCcCCC
Confidence 1 10 1111100 000000 0 000 000112368999999999883 334444555567778
Q ss_pred EEEEeCCCCCC
Q psy12466 532 RILLSGTPLQN 542 (680)
Q Consensus 532 rllLTgTP~~n 542 (680)
++++.|-|-|.
T Consensus 308 ~lilvGD~~QL 318 (574)
T 3e1s_A 308 RVLLVGDTDQL 318 (574)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEEeccccc
Confidence 99999999884
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0024 Score=73.18 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=89.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~E 450 (680)
..|.+.|++++..++. ....++.-.+|+|||.++..++..+.... ..++||++|+.. +.+-.+.
T Consensus 179 ~~ln~~Q~~av~~~l~---------~~~~li~GppGTGKT~~~~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~~ 243 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTEK 243 (624)
T ss_dssp CCCCHHHHHHHHHHHT---------CSEEEEECCTTSCHHHHHHHHHHHHHTSS------SCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---------CCCeEEECCCCCCHHHHHHHHHHHHHHcC------CCeEEEEeCcHHHHHHHHHH
Confidence 4588999999987643 24578888999999999988888776532 136999999854 4555555
Q ss_pred HHHHhCCCCeeEeecCCcc----------------------h------------------hhhh---------hhcCCCC
Q psy12466 451 FKKWLGLTRMCPYHVNQKN----------------------K------------------AEDY---------VYSRVSP 481 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~----------------------~------------------~~~~---------~~~~~~~ 481 (680)
+.+.. .++.-+....+. . ...+ ......+
T Consensus 244 l~~~~--~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (624)
T 2gk6_A 244 IHQTG--LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNAD 321 (624)
T ss_dssp HHTTT--CCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhcC--CeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55431 111111110000 0 0000 0113456
Q ss_pred EEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 482 VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 482 vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
|+++|...+.. ..+....|++||+|||.....+. ..+..+....+++|-|=|.|-
T Consensus 322 vI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 322 VICCTCVGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp EEEEETGGGGC--GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred EEEEcChhhcc--hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhcc
Confidence 77777655432 23455689999999996654332 122222345689999998874
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00087 Score=80.89 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=66.2
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEEcC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDE 269 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~DE 269 (680)
.++||+||. .|..+|.++|.++++ ++..+.|+... ....+|+|+|++.++..... ..-..+++||+||
T Consensus 130 ~rvL~l~PtkaLa~Q~~~~l~~~~~--~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDE 200 (1010)
T 2xgj_A 130 QRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDE 200 (1010)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHS--CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEET
T ss_pred CeEEEECChHHHHHHHHHHHHHHhC--CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEec
Confidence 589999997 788999999999997 56666665422 13468999999999765432 1224588999999
Q ss_pred CCCCCCCCCC--CCccccCCCCCC-ceeccCC
Q psy12466 270 KSLLKPPSGN--SPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 270 aH~lKN~~s~--~~~a~~~l~~~~-r~~LTG~ 298 (680)
+|++.+..-. ....+..+.... .++||.+
T Consensus 201 aH~l~d~~rg~~~e~il~~l~~~~~il~LSAT 232 (1010)
T 2xgj_A 201 VHYMRDKERGVVWEETIILLPDKVRYVFLSAT 232 (1010)
T ss_dssp GGGGGCTTTHHHHHHHHHHSCTTCEEEEEECC
T ss_pred hhhhcccchhHHHHHHHHhcCCCCeEEEEcCC
Confidence 9999876321 222333344333 4556544
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0017 Score=76.01 Aligned_cols=100 Identities=9% Similarity=0.020 Sum_probs=62.8
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~v 265 (680)
.++||+||+ .|..+|.++|.+|++. .++..++++....... .......+|+|+|++.+.. .+.-.++++|
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~~~~~~l~lV 494 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE---DVHFKNLGLV 494 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---CCCCSCCCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh---hhhccCCceE
Confidence 478999998 5678999999999963 4555555554332211 1233468999999998743 2334568999
Q ss_pred EEcCCCCCCCCCCCCCccccCC-CCCCceeccCC
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSGI-PSLPRKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~l-~~~~r~~LTG~ 298 (680)
|+||+|++.... ...+... .....+++|.+
T Consensus 495 VIDEaHr~g~~q---r~~l~~~~~~~~vL~mSAT 525 (780)
T 1gm5_A 495 IIDEQHRFGVKQ---REALMNKGKMVDTLVMSAT 525 (780)
T ss_dssp EEESCCCC--------CCCCSSSSCCCEEEEESS
T ss_pred EecccchhhHHH---HHHHHHhCCCCCEEEEeCC
Confidence 999999984332 1222222 23446666654
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00081 Score=76.56 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=56.6
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhh----c--ccCCCCEEEEehhHHHH---HHHh----hh
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY----V--YSRVSPVLIISYEMLIR---AYQT----IV 258 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~V~itsYe~l~~---~~~~----l~ 258 (680)
.++|||+|. +|+.+|.+++.++ + .++..++++........ . .....+|+++|++.+.. ..+. +.
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~-g-i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL-G-ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH-T-CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc-C-CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 479999996 7788999999998 2 45555555443221111 1 23567899999998742 2222 23
Q ss_pred cCCCcEEEEcCCCCCCCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPS 277 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~ 277 (680)
...+++||+||||.+-.+.
T Consensus 163 ~~~i~~iViDEAH~is~~g 181 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWG 181 (591)
T ss_dssp TTCEEEEEEETGGGGSTTC
T ss_pred ccCCcEEEEECcccccccc
Confidence 3579999999999987653
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00089 Score=75.08 Aligned_cols=105 Identities=16% Similarity=0.102 Sum_probs=68.3
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHH--HHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~--~~~~l~~~~~~~v 265 (680)
.++|||+|. +|+.+|.++++++. .++..+++....... ........+|+++|+|.+.. ..+.+....+++|
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~g--i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANG--VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred CCEEEECChHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 478999996 77789999999863 455555554332111 12233567899999999853 2334555789999
Q ss_pred EEcCCCCCCCCCCCC-------CccccCCCCCCceeccCCC
Q psy12466 266 ICDEKSLLKPPSGNS-------PGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 266 I~DEaH~lKN~~s~~-------~~a~~~l~~~~r~~LTG~~ 299 (680)
|+||||.+..+.... ......+.....++||++.
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 184 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 184 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCC
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 999999997654321 2222334445577777665
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0036 Score=73.61 Aligned_cols=147 Identities=14% Similarity=0.225 Sum_probs=88.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~E 450 (680)
..|.+.|++|+..++. ..-.++.-.+|+|||.++..++..+.... ..++||++|+.. +.+-.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~---------~~~~lI~GppGTGKT~~i~~~i~~l~~~~------~~~ILv~a~tn~A~d~l~~r 423 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLSKIH------KDRILVCAPSNVAVDHLAAK 423 (802)
T ss_dssp CCCCHHHHHHHHHHTT---------CSEEEEECSTTSSHHHHHHHHHHHHHHHH------CCCEEEEESSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc---------CCCEEEECCCCCCHHHHHHHHHHHHHhCC------CCeEEEEcCcHHHHHHHHHH
Confidence 4688999999987642 24578889999999999988887766531 135999999854 4666666
Q ss_pred HHHHhCCCCeeEeecCCcc---------------------------------------hhh---------hhhhcCCCCE
Q psy12466 451 FKKWLGLTRMCPYHVNQKN---------------------------------------KAE---------DYVYSRVSPV 482 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~---------------------------------------~~~---------~~~~~~~~~v 482 (680)
+.+.. .++.-+...... ... ........+|
T Consensus 424 L~~~g--~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~V 501 (802)
T 2xzl_A 424 LRDLG--LKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADV 501 (802)
T ss_dssp HHHTT--CCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHhhC--ccEEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCE
Confidence 65531 111111100000 000 0001134567
Q ss_pred EEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 483 LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 483 vI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
+++|...+.. ..+.. .|++||+|||+.+.... ..+..+....+++|-|=|.|-
T Consensus 502 I~~T~~~~~~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 502 VCCTCVGAGD--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp EEEETTGGGC--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred EEechhhcCh--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCcccc
Confidence 7777665431 22334 89999999998763221 122233445789999998874
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0055 Score=67.41 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=81.2
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
..|-+-|++++..+...+. .+.+..++.-..|+|||..+.+++..+...+. .++++++|+..... ++
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~----~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~------~~il~~a~T~~Aa~---~l 90 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIK----EKKHHVTINGPAGTGATTLTKFIIEALISTGE------TGIILAAPTHAAKK---IL 90 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHH----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC------CCEEEEESSHHHHH---HH
T ss_pred ccCCHHHHHHHHHHHHHHh----cCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC------ceEEEecCcHHHHH---HH
Confidence 4588999999998766432 22347888899999999999999988887653 35899999865432 22
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccce
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~ 531 (680)
....+ ..+..+|..-...... ... ...+... .......++++|+||+|.+. .......+..+....
T Consensus 91 ~~~~~-~~~~T~h~~~~~~~~~---~~~-~~~~~~~-------~~~~~~~~~~iiiDE~~~~~--~~~~~~l~~~~~~~~ 156 (459)
T 3upu_A 91 SKLSG-KEASTIHSILKINPVT---YEE-NVLFEQK-------EVPDLAKCRVLICDEVSMYD--RKLFKILLSTIPPWC 156 (459)
T ss_dssp HHHHS-SCEEEHHHHHTEEEEE---CSS-CEEEEEC-------SCCCCSSCSEEEESCGGGCC--HHHHHHHHHHSCTTC
T ss_pred Hhhhc-cchhhHHHHhccCccc---ccc-cchhccc-------ccccccCCCEEEEECchhCC--HHHHHHHHHhccCCC
Confidence 22111 1111111000000000 000 0011100 00112358999999999873 223333333445677
Q ss_pred EEEEeCCCCC
Q psy12466 532 RILLSGTPLQ 541 (680)
Q Consensus 532 rllLTgTP~~ 541 (680)
++++.|-|-|
T Consensus 157 ~~~~vGD~~Q 166 (459)
T 3upu_A 157 TIIGIGDNKQ 166 (459)
T ss_dssp EEEEEECTTS
T ss_pred EEEEECCHHH
Confidence 8999998877
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0013 Score=74.61 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=56.1
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC------CCCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHhh---hcCC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG------LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQTI---VDTE 261 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~l---~~~~ 261 (680)
.++|||||. .|..||.+++.+++. ...+....++...... ........+|+|+|++.+....... .-..
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccccc
Confidence 479999996 677899999999862 2334444443321111 1112235789999999997655432 2355
Q ss_pred CcEEEEcCCCCCCCC
Q psy12466 262 FDLLICDEKSLLKPP 276 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~ 276 (680)
+++||+||||++-+.
T Consensus 176 ~~~lViDEah~l~~~ 190 (579)
T 3sqw_A 176 VDYKVLDEADRLLEI 190 (579)
T ss_dssp CCEEEEETHHHHTST
T ss_pred CCEEEEEChHHhhcC
Confidence 899999999998654
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0046 Score=70.60 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=82.0
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKK 453 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~ 453 (680)
-+.|+.++..++. ++-.++.-.+|+|||.++..++..+....... ..++++++|+... .+-.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~---------~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~---~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALT---------RRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHT---------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSC---CCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhc---------CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcC---CCeEEEEeCChhHHHHHHHHHHH
Confidence 3679999977642 36688889999999988887777776431100 1358999998554 444444443
Q ss_pred HhCCCCeeEeecCC-cchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceE
Q psy12466 454 WLGLTRMCPYHVNQ-KNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKR 532 (680)
Q Consensus 454 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~r 532 (680)
+.....+....... ...... -+.++-.+.....-.........++++|+|||+.+. .......+..+....+
T Consensus 219 ~~~~l~l~~~~~~~~~~~~~T-----ih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 219 ALRQLPLTDEQKKRIPEDAST-----LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHAR 291 (608)
T ss_dssp HHHHSSCCSCCCCSCSCCCBT-----TTSCC-----------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCE
T ss_pred HHhcCCCCHHHHhccchhhhh-----hHhhhccCCCchHHHhccCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCE
Confidence 32111100000000 000000 011110000000000111122368999999999773 3344556667777889
Q ss_pred EEEeCCCCCCCHH
Q psy12466 533 ILLSGTPLQNDLQ 545 (680)
Q Consensus 533 llLTgTP~~n~~~ 545 (680)
++|-|=|-|..+.
T Consensus 292 liLvGD~~QL~~V 304 (608)
T 1w36_D 292 VIFLGDRDQLASV 304 (608)
T ss_dssp EEEEECTTSGGGT
T ss_pred EEEEcchhhcCCC
Confidence 9999998776543
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.01 Score=63.67 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=88.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~E~ 451 (680)
.|.|||+.-+..+.. .+..++.-.-+.|||..+.+++.......+ ...+++++|+. ....+.+++
T Consensus 163 ~L~p~Qk~il~~l~~---------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----g~~v~~vA~t~~qA~~vf~~i 228 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS---------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDRT 228 (385)
T ss_dssp CCCHHHHHHHHHHHH---------SSEEEEEECSSSCHHHHHHHHHHHHHHSSS-----SCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc---------CcEEEEEEcCcCChhHHHHHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHH
Confidence 589999998876632 245788888999999987776665443322 23589999973 333344666
Q ss_pred HHHh---CC-CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHh-
Q psy12466 452 KKWL---GL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG- 526 (680)
Q Consensus 452 ~~~~---~~-~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~- 526 (680)
..++ |. .+..+.... ... ........+.+.+- ..+.+....++++|+||+|.+++. .....++..
T Consensus 229 ~~mi~~~P~ll~~~~~~~~-~~~---I~f~nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ 298 (385)
T 2o0j_A 229 KQAIELLPDFLQPGIVEWN-KGS---IELDNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPV 298 (385)
T ss_dssp HHHHHHSCTTTSCCEEEEC-SSE---EEETTSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHH
T ss_pred HHHHHhChHhhhhhhccCC-ccE---EEeCCCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHH
Confidence 6554 32 111111111 000 11111122333321 234566788999999999999762 233444432
Q ss_pred cc--cceEEEEeCCCCCCCHHHHHHHHhh
Q psy12466 527 LN--IRKRILLSGTPLQNDLQEFFYLNDF 553 (680)
Q Consensus 527 l~--~~~rllLTgTP~~n~~~el~sll~f 553 (680)
+. ...++++.+||-..+ .+|.+...
T Consensus 299 ls~~~~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 299 ISSGRRSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp HHSTTCCEEEEEECCCSSS--HHHHHHHH
T ss_pred hhcCCCCcEEEEeCCCCch--hHHHHHHH
Confidence 22 346889999996653 55555443
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.006 Score=71.74 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=87.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E 450 (680)
..|.+.|++|+..++. .+-.++.-.+|+|||.++..++..+.... ..++||++|+... .+-.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~---------~~~~lI~GppGTGKT~ti~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~~ 419 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTEK 419 (800)
T ss_dssp CCCCHHHHHHHHHHHT---------SSEEEEECCTTSCHHHHHHHHHHHHHTTC------SSCEEEEESSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcc---------CCeEEEEcCCCCCHHHHHHHHHHHHHHcC------CCcEEEEcCcHHHHHHHHHH
Confidence 4588999999987643 24578889999999999988888776532 1369999998544 555555
Q ss_pred HHHHhCCCCeeEeecCCcch----------------------------------------hhhh---------hhcCCCC
Q psy12466 451 FKKWLGLTRMCPYHVNQKNK----------------------------------------AEDY---------VYSRVSP 481 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~----------------------------------------~~~~---------~~~~~~~ 481 (680)
+.+.. .++.-+....+.. ...+ ......+
T Consensus 420 l~~~g--~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 497 (800)
T 2wjy_A 420 IHQTG--LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNAD 497 (800)
T ss_dssp HHTTT--CCEEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHhC--cceEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCC
Confidence 54421 1111111100000 0000 0012346
Q ss_pred EEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 482 VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 482 vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
|+++|...+.. ..+....|++||+|||.....+. ..+..+....+++|-|=|.|-
T Consensus 498 VI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 498 VICCTCVGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp EEEEETGGGGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred EEEEchhhhCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 67766554431 22445689999999996653221 123333445789999998874
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0023 Score=70.59 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=52.8
Q ss_pred eEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEEE
Q psy12466 194 RVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~vI 266 (680)
++|||||.. |..+|.++++++.. ...+....++...... .....+|+|+|++.+...... +.-..+++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 799999976 56788888887753 3444444443322111 123468999999999776643 2224689999
Q ss_pred EcCCCCCCC
Q psy12466 267 CDEKSLLKP 275 (680)
Q Consensus 267 ~DEaH~lKN 275 (680)
+||+|++-.
T Consensus 241 iDEah~~~~ 249 (479)
T 3fmp_B 241 LDEADVMIA 249 (479)
T ss_dssp ECCHHHHHT
T ss_pred EECHHHHhh
Confidence 999998854
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0039 Score=75.15 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=66.1
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh--hcCCCcEEEEcC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDE 269 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l--~~~~~~~vI~DE 269 (680)
.++||++|. +|..+|.++|.++++..++..++++.. .....+|+|+|.+.+......- .-..+++||+||
T Consensus 83 ~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDE 155 (997)
T 4a4z_A 83 TKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDE 155 (997)
T ss_dssp CEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEEC
Confidence 479999994 578899999999987677777776542 1234689999999997655321 224589999999
Q ss_pred CCCCCCCCCC--CCccccCCCCCC-ceeccCC
Q psy12466 270 KSLLKPPSGN--SPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 270 aH~lKN~~s~--~~~a~~~l~~~~-r~~LTG~ 298 (680)
||++.+..-. ....+..+.... .++||.+
T Consensus 156 aH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 156 VHYVNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp TTCCCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred cccccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 9999876322 223333444444 3455533
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0033 Score=76.95 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=64.2
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCCe--eEEeecCCcchh----hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTRM--CPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~v 265 (680)
+++||+||+. |..||.++|.++++...+ ..+++....... ........+|+|+|++.+.. .+.-..+++|
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~---~~~~~~l~lv 729 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS---DVKFKDLGLL 729 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS---CCCCSSEEEE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC---CccccccceE
Confidence 5889999987 577999999999865444 444433222211 11233468999999987743 2333568999
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCCC-ceeccCCC
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSGIPSLP-RKSDSGIG 299 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~l~~~~-r~~LTG~~ 299 (680)
|+||+|++.. .....++.+.... .++||++.
T Consensus 730 IiDEaH~~g~---~~~~~l~~l~~~~~vl~lSATp 761 (1151)
T 2eyq_A 730 IVDEEHRFGV---RHKERIKAMRANVDILTLTATP 761 (1151)
T ss_dssp EEESGGGSCH---HHHHHHHHHHTTSEEEEEESSC
T ss_pred EEechHhcCh---HHHHHHHHhcCCCCEEEEcCCC
Confidence 9999999743 2333344444433 56666553
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0029 Score=65.52 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=54.3
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~v 265 (680)
.++|||||+- |..++.++++++.. ...+...+++....... ....+|+|+|.+.+...... +.-....+|
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 3799999965 56789999988863 34444444443321111 34568999999998766532 222458899
Q ss_pred EEcCCCCCCC
Q psy12466 266 ICDEKSLLKP 275 (680)
Q Consensus 266 I~DEaH~lKN 275 (680)
|+||||++-+
T Consensus 240 VlDEad~l~~ 249 (300)
T 3fmo_B 240 VLDEADVMIA 249 (300)
T ss_dssp EETTHHHHHH
T ss_pred EEeCHHHHhh
Confidence 9999999754
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0032 Score=70.86 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=55.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC------CCCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHhh---hcCC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG------LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQTI---VDTE 261 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~l---~~~~ 261 (680)
.++|||||. .|..||.+++++++. ...+..+.++...... ........+|+|+|++.+....... .-..
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 226 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 226 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccccccc
Confidence 479999996 677899999999852 2234444443322111 1112345789999999997654432 2245
Q ss_pred CcEEEEcCCCCCCCC
Q psy12466 262 FDLLICDEKSLLKPP 276 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~ 276 (680)
+++||+||||++-..
T Consensus 227 ~~~lViDEah~l~~~ 241 (563)
T 3i5x_A 227 VDYKVLDEADRLLEI 241 (563)
T ss_dssp CCEEEEETHHHHTST
T ss_pred ceEEEEeCHHHHhcc
Confidence 899999999998654
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0055 Score=71.09 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=57.5
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~D 268 (680)
.++|+|+|.. |..+|.+++++|.+ +.++..++|+...... .....+|+|+|++.+......-. -..+++||+|
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEET
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEe
Confidence 4799999987 78899999976654 3456666665433221 22467899999999976554311 1257899999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.+.+.
T Consensus 146 E~H~l~~~ 153 (702)
T 2p6r_A 146 EIHLLDSE 153 (702)
T ss_dssp TGGGGGCT
T ss_pred eeeecCCC
Confidence 99999763
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.005 Score=71.71 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=57.2
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc--CCCcEEEEc
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~--~~~~~vI~D 268 (680)
.++|+|+|. .|..+|.+++++|.+ +.++..++|+...... .....+|+|+|++.+......-.. ..+++||+|
T Consensus 69 ~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 69 GKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp SEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 589999996 778899999987653 3566666665433221 224678999999999765443111 257899999
Q ss_pred CCCCCCC
Q psy12466 269 EKSLLKP 275 (680)
Q Consensus 269 EaH~lKN 275 (680)
|+|.+..
T Consensus 146 E~H~l~~ 152 (720)
T 2zj8_A 146 EIHLIGS 152 (720)
T ss_dssp TGGGGGC
T ss_pred CCcccCC
Confidence 9999975
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.029 Score=55.42 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=62.2
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
+.-.++.-+||.|||..++.++..+...+. +++++.|.---. +...+.-..+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~-------kVli~~~~~d~r----------~~~~i~srlG~---------- 64 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV-------KYLVFKPKIDTR----------SIRNIQSRTGT---------- 64 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-------CEEEEEECCCGG----------GCSSCCCCCCC----------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC-------EEEEEEeccCch----------HHHHHHHhcCC----------
Confidence 334566789999999999999988877653 488887752100 00001000000
Q ss_pred cCCCCEEEEeHHHHHHHHH-hhhccCceEEEEcCcccccCcccHHHHHHHhc-ccceEEEEeCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGT 538 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~-~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~~~rllLTgT 538 (680)
....+.+.+.+.+..... .+....+++|||||+|.+... ....+..+ .....++++|-
T Consensus 65 -~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 65 -SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp -SSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred -CccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 011222333333333222 222346899999999987432 33344443 23567899996
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0064 Score=58.26 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
.++.-.||.|||..++.++..+...+. +++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~-------~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKK-------KVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTC-------EEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEeec
Confidence 467789999999999988887776542 58888886
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.029 Score=63.72 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=85.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|.|||+.-+..+.. .+..++.-.-|.|||..+.+++.......+ ...++++.|+ .......+.+
T Consensus 163 ~l~p~Q~~i~~~l~~---------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----~~~i~~va~t~~qA~~~~~~i 228 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS---------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDRT 228 (592)
T ss_dssp CCCHHHHHHHHHHHH---------CSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----SCEEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhcc---------ccEEEEEEcCccChHHHHHHHHHHHHHhCC-----CCeEEEEECCHHHHHHHHHHH
Confidence 589999988776522 245788889999999987766655544432 2368999997 3344455677
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-c--
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-N-- 528 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~-- 528 (680)
..++......+...................+...+- ....+....++++|+||+|.+++.. ....++... .
T Consensus 229 ~~~i~~~p~~~~~~~~~~~~~~i~~~nGs~i~~~s~-----~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 229 KQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSG 302 (592)
T ss_dssp HHHHTTSCTTTSCCEEEECSSEEEETTSCEEEEEEC-----CHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSS
T ss_pred HHHHHhChHhhccccccCCccEEEecCCCEEEEEeC-----CCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccC
Confidence 766533211000000000000011111122222221 1234556679999999999987632 444444432 2
Q ss_pred cceEEEEeCCCCCC
Q psy12466 529 IRKRILLSGTPLQN 542 (680)
Q Consensus 529 ~~~rllLTgTP~~n 542 (680)
...++++++||-..
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 34689999999655
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0081 Score=73.16 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=56.0
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEcC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDE 269 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~DE 269 (680)
.++||++|. .|..||.++|.++++ .+..++|+.. .....+|+|+|.+.++.....-. -..+++||+||
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~--~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDE 298 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS--SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEET
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC--CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhh
Confidence 589999997 567899999999997 5666665543 12447899999999977543211 12478999999
Q ss_pred CCCCCCC
Q psy12466 270 KSLLKPP 276 (680)
Q Consensus 270 aH~lKN~ 276 (680)
||++.+.
T Consensus 299 aH~l~d~ 305 (1108)
T 3l9o_A 299 VHYMRDK 305 (1108)
T ss_dssp GGGTTSH
T ss_pred hhhcccc
Confidence 9999764
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.045 Score=53.56 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=28.1
Q ss_pred EEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 402 LADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 402 LaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
+.-+||.|||..++..+..+...+. ++||+.|.
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g~-------kVli~k~~ 65 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAKQ-------HAIVFKPC 65 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTTC-------CEEEEECC
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCC-------EEEEEEec
Confidence 5789999999999999988877763 58999886
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0091 Score=69.37 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=65.1
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~D 268 (680)
.++|+++|.- |..+|.++++++.+ +.++..++|+....... ....+|+|+|++.+......-. -..+++||+|
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEEC
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEe
Confidence 4899999987 78899999976643 35666666654332221 2367899999999977544311 1257899999
Q ss_pred CCCCCCCCCCC--CCccccCCCCCCceeccCCC
Q psy12466 269 EKSLLKPPSGN--SPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 269 EaH~lKN~~s~--~~~a~~~l~~~~r~~LTG~~ 299 (680)
|+|.+.+..-. ....+..+...+.+++|.+.
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl 185 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAKRRNLLALSATI 185 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCC
T ss_pred chhhcCCcccchHHHHHHHhcccCcEEEEcCCC
Confidence 99998643211 11112233334456666543
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.082 Score=60.32 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=52.1
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
+...|-+.|+++|. ...+..++-...|+|||.+.+.-+..+...+.. ...++|+|+++ ....+-.
T Consensus 6 ~~~~Ln~~Q~~av~-----------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---~~~~iL~ltft~~aa~e~~ 71 (647)
T 3lfu_A 6 LLDSLNDKQREAVA-----------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---SPYSIMAVTFTNKAAAEMR 71 (647)
T ss_dssp HHTTCCHHHHHHHT-----------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---CGGGEEEEESSHHHHHHHH
T ss_pred hhhcCCHHHHHHHh-----------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---ChhhEEEEeccHHHHHHHH
Confidence 34568899999994 123456777789999999999988888765421 12469999987 4556666
Q ss_pred HHHHHHhC
Q psy12466 449 DEFKKWLG 456 (680)
Q Consensus 449 ~E~~~~~~ 456 (680)
+.+.+..+
T Consensus 72 ~rl~~~~~ 79 (647)
T 3lfu_A 72 HRIGQLMG 79 (647)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 66776654
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.14 Score=58.65 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=40.2
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHHHHHHHHhCCCCeeEee
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWNDEFKKWLGLTRMCPYH 464 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~~E~~~~~~~~~v~~~~ 464 (680)
.|.|.-..+|.|||+++...+....-.| +.+.||+|+.-+ ..|...+-+|++....+++.
T Consensus 89 ~G~iaEM~TGEGKTLva~lp~~lnAL~G-------~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 89 EGKVAEMKTGEGKTLAATMPIYLNALIG-------KGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp TTCEEECCTTSCHHHHTHHHHHHHHTTS-------SCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CCChhhccCCCCccHHHHHHHHHHHhcC-------CceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 4668889999999997644332222222 238999998544 56999999998854333333
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0097 Score=72.43 Aligned_cols=83 Identities=12% Similarity=0.229 Sum_probs=59.8
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC-CCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI 266 (680)
.++|||||.. |..|+.++|+++.+ ..++..++++...... ........+|+|+|.+.+......+....+++||
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lV 201 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 201 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEE
T ss_pred CeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEE
Confidence 4799999965 56899999999762 2466666665543111 1222344799999999997766666667899999
Q ss_pred EcCCCCCCC
Q psy12466 267 CDEKSLLKP 275 (680)
Q Consensus 267 ~DEaH~lKN 275 (680)
+||||.+-.
T Consensus 202 iDEaH~l~~ 210 (1104)
T 4ddu_A 202 VDDVDAVLK 210 (1104)
T ss_dssp ESCHHHHTT
T ss_pred EeCCCcccc
Confidence 999997643
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.047 Score=52.56 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=64.4
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
=.++.-.||.|||..++.++..+...+. +++|+.|.. |. ++ +.. ....+....
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~-------kV~v~k~~~----d~----r~-~~~-~i~s~~g~~---------- 62 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQ-------KIQVFKPEI----DN----RY-SKE-DVVSHMGEK---------- 62 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEEEEC----------------C-EEECTTSCE----------
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC-------EEEEEEecc----Cc----cc-hHH-HHHhhcCCc----------
Confidence 3456678999999999999888876653 589998862 11 11 111 111111000
Q ss_pred CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-ccceEEEEeCC--CCC----CCHHHHHHHH
Q psy12466 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGT--PLQ----NDLQEFFYLN 551 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~~~rllLTgT--P~~----n~~~el~sll 551 (680)
...+.+...+.+ ...+. ..+++||+||||.+... ....+..+ .....++++|- .++ +...+|..+.
T Consensus 63 ~~a~~~~~~~~i---~~~~~-~~~dvViIDEaqfl~~~---~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~A 135 (191)
T 1xx6_A 63 EQAVAIKNSREI---LKYFE-EDTEVIAIDEVQFFDDE---IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIA 135 (191)
T ss_dssp EECEEESSSTHH---HHHCC-TTCSEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHC
T ss_pred eeeEeeCCHHHH---HHHHh-ccCCEEEEECCCCCCHH---HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHc
Confidence 001112222111 11221 25899999999997422 23444443 33456777775 344 4455565555
Q ss_pred hhh
Q psy12466 552 DFA 554 (680)
Q Consensus 552 ~fl 554 (680)
+.+
T Consensus 136 D~V 138 (191)
T 1xx6_A 136 EFV 138 (191)
T ss_dssp SEE
T ss_pred ccE
Confidence 444
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.019 Score=69.60 Aligned_cols=81 Identities=17% Similarity=0.296 Sum_probs=57.1
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCC------CeeEEeecCCcchh--hhcccCCCCEEEEehhHHHHHHHhhhcCCCc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLT------RMCPYHVNQKNKAE--DYVYSRVSPVLIISYEMLIRAYQTIVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~ 263 (680)
.++|||||+. |..++.++|++++... ++..++|+...... ........+|+|+|.+.+......|. .++
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~--~l~ 177 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELG--HFD 177 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSC--CCS
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhc--cCC
Confidence 4799999965 5679999999998643 45556665443221 11111128999999999977655544 688
Q ss_pred EEEEcCCCCCCC
Q psy12466 264 LLICDEKSLLKP 275 (680)
Q Consensus 264 ~vI~DEaH~lKN 275 (680)
+||+||||++-+
T Consensus 178 ~lViDEah~~l~ 189 (1054)
T 1gku_B 178 FIFVDDVDAILK 189 (1054)
T ss_dssp EEEESCHHHHHT
T ss_pred EEEEeChhhhhh
Confidence 999999999765
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.25 Score=45.69 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 379 RQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 379 ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+..+.+.+. .....+.+|.-+.|+|||..+-+++..+..
T Consensus 28 ~~~~~~l~~~l~---~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 28 DTEIRRAIQILS---RRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHHT---SSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh---CCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444444321 234567888999999999999888877655
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.12 Score=51.12 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=27.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
-+..-+||.|||..++..+......+. +++|+-|.
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~-------kvli~kp~ 56 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQY-------KCLVIKYA 56 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTC-------CEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC-------eEEEEeec
Confidence 355678999999999998888776653 58888875
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.12 Score=55.37 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=51.9
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+|.+|.-.+|+|||..|-|++..... +++.|-...++..|..|-.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~----------~f~~v~~s~l~sk~vGese~~------------------- 229 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC----------KFIRVSGAELVQKYIGEGSRM------------------- 229 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTC----------EEEEEEGGGGSCSSTTHHHHH-------------------
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCC----------CceEEEhHHhhccccchHHHH-------------------
Confidence 345789999999999999999888866432 366676666766664443321
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
++..........+.+|++||.+.+.
T Consensus 230 ----------------vr~lF~~Ar~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 230 ----------------VRELFVMAREHAPSIIFMDEIDSIG 254 (405)
T ss_dssp ----------------HHHHHHHHHHTCSEEEEEESSSCCT
T ss_pred ----------------HHHHHHHHHHhCCceEeeecchhhc
Confidence 1222233344568899999999873
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.054 Score=58.83 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=68.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
.-.++.-..|.|||.....++.. ++.||++|+ .+...|.+.+.+. +. .
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~------------~~~lVlTpT~~aa~~l~~kl~~~-~~---------~--------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF------------EEDLILVPGRQAAEMIRRRANAS-GI---------I--------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT------------TTCEEEESCHHHHHHHHHHHTTT-SC---------C---------
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc------------CCeEEEeCCHHHHHHHHHHhhhc-Cc---------c---------
Confidence 34667889999999987766521 236999997 6778898887532 00 0
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
.....-+.|++.+...........+++||+|||..+ +.......+..++. .++++.|=|-|-
T Consensus 211 -~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~--~~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML--HTGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp -CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS--CHHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred -ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC--CHHHHHHHHHhCCC-CEEEEecCcccc
Confidence 011223677776644322222234899999999876 23333333333344 889999988664
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.13 Score=52.76 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+.+|.-++|+|||..+-+++..+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 344689999999999999999888877654
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.049 Score=61.22 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=28.7
Q ss_pred CCCEEEEehhHHHHHHHh--h-hcCCCcEEEEcCCCCCCCCCCC
Q psy12466 239 VSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEKSLLKPPSGN 279 (680)
Q Consensus 239 ~~~V~itsYe~l~~~~~~--l-~~~~~~~vI~DEaH~lKN~~s~ 279 (680)
..+|+|++|..+...... + ......++|+||||+|-+ ...
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~ 190 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNE 190 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHH
Confidence 468999999999765321 1 113567899999999987 443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.56 Score=48.35 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=63.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+.+.+|.-+.|+|||..+-+++..+...+. +++.+-...+...+...+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~--------------------- 87 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGY-------RVIYSSADDFAQAMVEHLKKG--------------------- 87 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTC-------CEEEEEHHHHHHHHHHHHHHT---------------------
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCC-------EEEEEEHHHHHHHHHHHHHcC---------------------
Confidence 3567899999999999999888887765431 255554434434333333210
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc---cHHHHHHHhc-ccceEEEEeCCCCC----CCHHHH
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK---SKLYELMTGL-NIRKRILLSGTPLQ----NDLQEF 547 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~---s~~~~~l~~l-~~~~rllLTgTP~~----n~~~el 547 (680)
..+.+... + ...+++++||+|.+.... ......+..+ ....++++|++.-. .-...|
T Consensus 88 ----------~~~~~~~~---~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L 152 (324)
T 1l8q_A 88 ----------TINEFRNM---Y--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRL 152 (324)
T ss_dssp ----------CHHHHHHH---H--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHH
T ss_pred ----------cHHHHHHH---h--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHh
Confidence 01111111 1 137899999999986421 2222233332 34456788877322 223456
Q ss_pred HHHHh
Q psy12466 548 FYLND 552 (680)
Q Consensus 548 ~sll~ 552 (680)
.+-+.
T Consensus 153 ~sR~~ 157 (324)
T 1l8q_A 153 VSRFE 157 (324)
T ss_dssp HHHHH
T ss_pred hhccc
Confidence 66553
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.46 Score=49.50 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=37.5
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
++|+|.+.++.+.+.+.. ....+..++.-+.|+|||..+.+++..+....
T Consensus 3 ~~pw~~~~~~~l~~~i~~--~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQA--GRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCGGGHHHHHHHHHHHHT--TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCCchHHHHHHHHHHHHc--CCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 578999998887765422 12234578889999999999999998876543
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.27 Score=45.55 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
....+.+|.-+.|+|||..+-+++..+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999888887765
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.17 Score=58.08 Aligned_cols=77 Identities=22% Similarity=0.249 Sum_probs=57.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
++.+.|..++.-+.+.+. .+.....|.--+|.|||+++..++... . +|+|||+|+ .+..||.+||
T Consensus 8 ~~~~~q~~ai~~l~~~~~----~~~~~~~l~g~tgs~kt~~~a~~~~~~--~--------~~~lvv~~~~~~A~ql~~el 73 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALR----DGERFVTLLGATGTGKTVTMAKVIEAL--G--------RPALVLAPNKILAAQLAAEF 73 (664)
T ss_dssp CCCTTHHHHHHHHHHHHH----TTCSEEEEEECTTSCHHHHHHHHHHHH--T--------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHh----cCCCcEEEEcCCCcHHHHHHHHHHHHh--C--------CCEEEEecCHHHHHHHHHHH
Confidence 467899999987766431 122235677889999999988777544 1 249999998 6779999999
Q ss_pred HHHhCCCCeeEe
Q psy12466 452 KKWLGLTRMCPY 463 (680)
Q Consensus 452 ~~~~~~~~v~~~ 463 (680)
..|+|...|..+
T Consensus 74 ~~~~~~~~V~~f 85 (664)
T 1c4o_A 74 RELFPENAVEYF 85 (664)
T ss_dssp HHHCTTSEEEEC
T ss_pred HHHCCCCeEEEc
Confidence 999987655544
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.21 Score=46.77 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~ 422 (680)
+.|.+++..+.+.........+.+.+|.-+.|.|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46888888776654433334567788889999999999988888776
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.45 E-value=0.15 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...|.+|.-++|+|||..+-+++..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35678999999999999998887653
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.22 Score=54.08 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=50.2
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+|.+|.-.+|+|||..|-|++..+.. +++.|-...++..|..+-.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~----------~~~~v~~s~l~sk~~Gese~-------------------- 261 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA----------NFIFSPASGIVDKYIGESAR-------------------- 261 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----------EEEEEEGGGTCCSSSSHHHH--------------------
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC----------CEEEEehhhhccccchHHHH--------------------
Confidence 345789999999999999999988876532 35666555555555333222
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.++..........+.+|++||+..+.
T Consensus 262 ---------------~ir~~F~~A~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 262 ---------------IIREMFAYAKEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp ---------------HHHHHHHHHHHSCSEEEEEECCCSSS
T ss_pred ---------------HHHHHHHHHHhcCCceeeeecccccc
Confidence 12222233345578899999999873
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.24 Score=53.43 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=50.8
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+|.+|.-.+|+|||..|-|++..... +++.|....++..|..|-.+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~----------~fi~v~~s~l~sk~vGesek~------------------- 263 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA----------TFLRIVGSELIQKYLGDGPRL------------------- 263 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTC----------EEEEEESGGGCCSSSSHHHHH-------------------
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCC----------CEEEEEHHHhhhccCchHHHH-------------------
Confidence 345689999999999999999888876432 366666666665554333221
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
++..........+.+|++||.+.+.
T Consensus 264 ----------------ir~lF~~Ar~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 264 ----------------CRQIFKVAGENAPSIVFIDEIDAIG 288 (437)
T ss_dssp ----------------HHHHHHHHHHTCSEEEEEEEESSSS
T ss_pred ----------------HHHHHHHHHhcCCcEEEEehhhhhc
Confidence 2222233344568899999999873
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.61 Score=48.96 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=23.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.....+|.-+.|+|||..+-+++..+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34578889999999999998888776543
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.11 Score=58.15 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=25.8
Q ss_pred CCCEEEEehhHHHHHHH--hhh-------cCCCcEEEEcCCCCC
Q psy12466 239 VSPVLIISYEMLIRAYQ--TIV-------DTEFDLLICDEKSLL 273 (680)
Q Consensus 239 ~~~V~itsYe~l~~~~~--~l~-------~~~~~~vI~DEaH~l 273 (680)
..+|+|++|..+..... .+. ....+++|+||||+|
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccH
Confidence 35899999999965322 222 235689999999999
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.38 Score=52.39 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=50.4
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+|.+|.-.+|+|||..|-|++..+.. +++.|-...++..|..+-.+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~----------~fi~vs~s~L~sk~vGesek-------------------- 289 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDA----------TFIRVIGSELVQKYVGEGAR-------------------- 289 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTC----------EEEEEEGGGGCCCSSSHHHH--------------------
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCC----------CeEEEEhHHhhcccCCHHHH--------------------
Confidence 356789999999999999999888866432 35666666665555333222
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.++..........+.+|++||...+.
T Consensus 290 ---------------~ir~lF~~Ar~~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 290 ---------------MVRELFEMARTKKACIIFFDEIDAVG 315 (467)
T ss_dssp ---------------HHHHHHHHHHHTCSEEEEEECCTTTS
T ss_pred ---------------HHHHHHHHHHhcCCceEeeccccccc
Confidence 12222333344568899999999873
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.38 Score=55.21 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=56.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+++.+|..++.-+.+.+. .+.....|.--+|.|||+++..++... . +|+|||+|+ .+..+|.+|+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~----~~~~~~~l~g~~gs~k~~~~a~~~~~~--~--------~~~lvv~~~~~~A~~l~~el 77 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQ----EGKKHQTLLGATGTGKTFTVSNLIKEV--N--------KPTLVIAHNKTLAGQLYSEF 77 (661)
T ss_dssp CCCTTHHHHHHHHHHHHH----TTCSEEEEEECTTSCHHHHHHHHHHHH--C--------CCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh----cCCCcEEEECcCCcHHHHHHHHHHHHh--C--------CCEEEEECCHHHHHHHHHHH
Confidence 356799999987766431 222335677889999999988777543 1 249999998 6679999999
Q ss_pred HHHhCCCCeeEe
Q psy12466 452 KKWLGLTRMCPY 463 (680)
Q Consensus 452 ~~~~~~~~v~~~ 463 (680)
..|+|...|..+
T Consensus 78 ~~~~~~~~v~~f 89 (661)
T 2d7d_A 78 KEFFPNNAVEYF 89 (661)
T ss_dssp HHHCTTSEEEEE
T ss_pred HHHcCCCcEEEc
Confidence 999987655544
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.22 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...|.+|.-++|+|||..|-+++..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35678999999999999998888765
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=92.12 E-value=0.33 Score=47.12 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=31.3
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
+...+..+..... ...+.+.+|.-+.|+|||..+-+++..+...+
T Consensus 36 ~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~ 80 (242)
T 3bos_A 36 NDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLIHAACARANELE 80 (242)
T ss_dssp CHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3455555544321 22567788999999999999988888776653
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.46 Score=45.66 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=26.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
-++.-.||+|||...+-.+..+...+ .+++++-|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~-------~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ-------YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT-------CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEccc
Confidence 45678999999988877777776654 248888875
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.65 E-value=1.4 Score=41.62 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
..+.+|.-+.|+|||..+-+++..+...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3458899999999999988888776543
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=91.64 E-value=0.32 Score=55.59 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=50.2
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCC
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSL 272 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~ 272 (680)
++||++|.-. ..++.+.+.+.++ ..+...++... .....+|++.+.+.+.. ...+...++++||+||||.
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~-------~~~~~~IlV~TPGrLl~-~~~l~l~~l~~lVlDEAH~ 329 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT-------ITTGAPVTYSTYGKFLA-DGGCSGGAYDIIICDECHS 329 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE-------ECCCCSEEEEEHHHHHH-TTSCCTTSCSEEEETTTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe-------ccCCCCEEEECcHHHHh-CCCcccCcccEEEEccchh
Confidence 7999999865 5688888888776 34544444321 23557899999999832 2233445699999999987
Q ss_pred C
Q psy12466 273 L 273 (680)
Q Consensus 273 l 273 (680)
+
T Consensus 330 l 330 (666)
T 3o8b_A 330 T 330 (666)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.21 Score=54.22 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=33.5
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHH
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWND 449 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~ 449 (680)
....+|.+|.-.+|+|||..|-|++..... +++.|-...++..|..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~----------~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNA----------TFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----------EEEEEEGGGGCSSCSS
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCC----------CEEEEehhhhhhcccc
Confidence 345789999999999999999888866432 3666666666655533
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.43 E-value=1.1 Score=47.52 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=27.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
...+.+|.-+.|+|||..|-+++..+ + .+++.|....+...|
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~---~-------~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES---N-------ATFFNISAASLTSKY 188 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT---T-------CEEEEECSCCC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh---c-------CcEEEeeHHHhhccc
Confidence 35789999999999999888876542 1 235555555555444
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.32 Score=52.70 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=31.6
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
....+|.+|.-.+|+|||..|-|++..+.. +++.|-...++..|
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~----------~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKA----------AFIRVNGSEFVHKY 246 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTC----------EEEEEEGGGTCCSS
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC----------CeEEEecchhhccc
Confidence 346788999999999999999888876532 35555555555444
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.44 Score=46.50 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=26.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
-++.-+||.|||...+-.+..+...+. +++|+-|.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~-------kvli~kp~ 65 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQ-------KVVVFKPA 65 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC-------CEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC-------ceEEEEec
Confidence 456678999999888888777766553 48888885
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.62 Score=47.93 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=34.8
Q ss_pred CceEEEEcCccccc-Cc-ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 501 EFDLLICDEGHRLK-NG-KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 501 ~~~~vIlDEaH~~k-n~-~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
...++|+||+|.+. .. .....+.+.......++++|+++...-...+.+-+..+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVIT 161 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEE
Confidence 57899999999984 21 222333344445667888888876655555666554443
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.86 E-value=5.1 Score=41.41 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=32.5
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
|.-|...+...+... .....+.+.+|.-.+|+|||.++-+++..+....
T Consensus 25 Re~E~~~i~~~L~~~--i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 25 QVEDFTRIFLPIYDS--LMSSQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHHHHHHHHH--HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH--hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 344555554232221 1234566788899999999999999998887643
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.24 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..+|.+|.-++|+|||..+-+++..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34788999999999999998888664
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.88 Score=43.16 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=23.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+|.-+.|+|||..+-+++..+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~ 82 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN 82 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6788999999999999988888776543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.92 Score=44.78 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.+|.-++|+|||..+-+++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999988887654
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.45 Score=46.76 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=45.3
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCC
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSL 272 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~ 272 (680)
++|+++|.-. ..+..+.+.+.++. .+....+... ...........+|+++|.+.+...... .-.++++||+||+|+
T Consensus 111 ~~l~~~p~~~la~q~~~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 111 NIVVTQPRRISAVSVAERVAFERGE-EPGKSCGYSV-RFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHE 187 (235)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTTC-CTTSSEEEEE-TTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTS
T ss_pred EEEEeccchHHHHHHHHHHHHHhcc-ccCceEEEee-chhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCcc
Confidence 7899999754 44666777766642 2222222111 111111113467999999988776543 124588999999997
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.27 Score=49.60 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=21.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
....+.+|.-++|+|||..+-+++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45678899999999999988877654
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=89.48 E-value=0.91 Score=47.45 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
+.+++++..+.+.+... ...+++.+|.-++|+|||..+-+++..+..
T Consensus 50 ~~~~~~l~~l~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREG-KIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp HHHHHHHHHHHHHHHTT-CCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44555666665543321 223467899999999999999998887753
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=1.7 Score=47.01 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=24.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..+.+|.-+.|+|||..+-+++..+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~ 158 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 56789999999999999988888776653
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=1.1 Score=44.74 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=21.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
....+.+|.-++|+|||..|-+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567888899999999999888776
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.27 E-value=1.9 Score=44.28 Aligned_cols=40 Identities=8% Similarity=-0.128 Sum_probs=25.9
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
|.+.+..+.+.+.. ......++.-+.|.|||..+.+++..
T Consensus 2 ~~~~~~~L~~~i~~---~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEK---SEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHT---CSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHC---CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44555555443321 22456888999999999998888764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=89.26 E-value=2.4 Score=46.00 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.5
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
-.+++-..|.|||.++..++..+...+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 456677899999999999998888765
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.79 E-value=2.2 Score=43.41 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.+.+|.-+.|+|||..+-+++..+..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 35889999999999999888877643
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=88.21 E-value=0.81 Score=49.78 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=42.5
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh-cCCCcEEEEcCC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV-DTEFDLLICDEK 270 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~-~~~~~~vI~DEa 270 (680)
.++||++|... ..++.+++. ...+. +....... .......|.+++.+.+........ -.++++||+|||
T Consensus 49 ~~~lvl~Ptr~La~Q~~~~l~----g~~v~-~~~~~~~~----~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEa 119 (451)
T 2jlq_A 49 LRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVKS----DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEA 119 (451)
T ss_dssp CCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTCSC----CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETT
T ss_pred CcEEEECCCHHHHHHHHHHhc----Cceee-eeeccccc----cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCC
Confidence 47899999765 457777664 12221 11111100 112334688888887755443222 246899999999
Q ss_pred CCC
Q psy12466 271 SLL 273 (680)
Q Consensus 271 H~l 273 (680)
|++
T Consensus 120 h~~ 122 (451)
T 2jlq_A 120 HFT 122 (451)
T ss_dssp TCC
T ss_pred ccC
Confidence 987
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=88.00 E-value=3.3 Score=44.70 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=61.4
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe-ccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT-PSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~-P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
-.+++-..|.|||.++..++..+...+. ++++++ ...-..- .+.+..+.....+.++.......
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~-------kVllv~~D~~r~~a-~eqL~~~~~~~gv~~~~~~~~~d------- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGY-------KVGLVAADVYRPAA-YDQLLQLGNQIGVQVYGEPNNQN------- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTC-------CEEEEEECCSCHHH-HHHHHHHHHTTTCCEECCTTCSC-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEEecCccchhH-HHHHHHHHHhcCCceeeccccCC-------
Confidence 3556678999999999999988877653 355555 4322211 23344443332232222211110
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc--CcccHHHHHHHhc----c-cceEEEEeCCCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK--NGKSKLYELMTGL----N-IRKRILLSGTPL 540 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k--n~~s~~~~~l~~l----~-~~~rllLTgTP~ 540 (680)
.-..+......+....+|+||+|++-+.. ... .....+..+ . ....+++.++--
T Consensus 164 --------p~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~-~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 164 --------PIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEET-KLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp --------HHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTT-HHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------HHHHHHHHHHHHHhcCCCEEEEECCCCccccCCH-HHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 01112233444555679999999998754 322 222333322 2 234467777753
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.58 E-value=1.1 Score=45.61 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=21.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 34889999999999999888877643
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=87.41 E-value=0.44 Score=51.86 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
..+|.+|.-++|+|||..|-+++..+. + .+++.|....+...|
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~--~-------~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN--N-------STFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC--S-------SEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC--C-------CCEEEEeHHHHHhhh
Confidence 457889999999999999988876541 1 235555555555444
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.04 E-value=7.9 Score=40.18 Aligned_cols=26 Identities=27% Similarity=0.162 Sum_probs=21.5
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
..+|.-+.|+|||..+-+++..+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 68899999999999988887766543
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=86.58 E-value=1.6 Score=47.12 Aligned_cols=52 Identities=8% Similarity=-0.072 Sum_probs=33.8
Q ss_pred eEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeH
Q psy12466 434 KVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISY 487 (680)
Q Consensus 434 ~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty 487 (680)
++||+||. .-.....+.+.+. ..++..+|+..+.........+..+|+|+|-
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 48999997 3445555556554 5678888876444433444556788888883
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.44 E-value=1.8 Score=44.60 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=62.2
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc--hHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS--LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s--ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+.+|.-+.|+|||..+-+++..+....... ..++-+-+.. -+..+.+.+..+.... + ...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~------- 121 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMK----SRILELNASDERGISIVREKVKNFARLT-V-----SKP------- 121 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHT----TSEEEECSSSCCCHHHHTTHHHHHHHSC-C-----CCC-------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccc----cceEEEccccccchHHHHHHHHHHhhhc-c-----ccc-------
Confidence 4588999999999999988887765320000 1134344432 2344444333332110 0 000
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc-ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG-KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~-~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
..+ .........+.+||+||+|.+... .....+.+.......+++++++....-...+.+-+
T Consensus 122 ---------~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 122 ---------SKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp ---------CTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred ---------chh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 000 001111235789999999998432 22334444444555667776655444334444433
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=86.44 E-value=3.7 Score=42.66 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=23.7
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
..+.+.+|.-+.|+|||..+-+++..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567889999999999999888877654
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=86.21 E-value=4.2 Score=38.63 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=21.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
...+|.-+.|+|||..+-+++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 357889999999999988887766543
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.01 E-value=3.1 Score=49.10 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=30.0
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|...+..+.+.+. .....+.+|.-++|+|||..+-+++..+..
T Consensus 175 r~~~i~~l~~~l~---~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 175 RDEEIRRVIQILL---RRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CHHHHHHHHHHHH---CSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh---cCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3344555544332 234567899999999999999888887755
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.81 E-value=0.99 Score=47.43 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=21.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
....+.+|.-+.|+|||..+-+++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34678899999999999998887754
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=85.66 E-value=0.8 Score=46.84 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=22.2
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..+.+.+|.-++|+|||..+-+++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456788999999999999988877653
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=85.36 E-value=0.72 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=17.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHH
Q psy12466 400 AILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~ 421 (680)
.++.-.+|.|||..|++.+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 5677889999999988876544
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=85.03 E-value=3.2 Score=43.12 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.3
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+|.-+.|+|||..+-+++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34688999999999999888877654
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=84.93 E-value=2 Score=49.89 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=30.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|...+..+.+.+. .....+.+|.-+.|+|||..+-+++..+..
T Consensus 191 r~~~i~~l~~~l~---~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 191 REKELERAIQVLC---RRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp CHHHHHHHHHHHT---SSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---ccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3444555555432 235677899999999999999888877654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.50 E-value=0.68 Score=41.72 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=20.2
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIW 419 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~ 419 (680)
......+|.-++|+|||..|-++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999998876654
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=83.48 E-value=5.8 Score=37.21 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=62.0
Q ss_pred EcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec--cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCC
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP--SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P--~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 480 (680)
+---|.|||..++.++..+...+. ++|+|=- ..-+..|... ... ..
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g~-------~vlliD~D~~~~~~~~~~~-----~~~--------------------~~ 55 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSGY-------NIAVVDTDPQMSLTNWSKA-----GKA--------------------AF 55 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTC-------CEEEEECCTTCHHHHHHTT-----SCC--------------------SS
T ss_pred eCCCCccHHHHHHHHHHHHHHCCC-------eEEEEECCCCCCHHHHHhc-----CCC--------------------CC
Confidence 345689999999999999988653 4676653 3444555320 000 12
Q ss_pred CEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhh
Q psy12466 481 PVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554 (680)
Q Consensus 481 ~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl 554 (680)
+++-...+.+...+..+.. .+|+||+|=.-.+ +.....+... +.. +++-.+|-..+ ..+..+++.+
T Consensus 56 ~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~----~~~~~~~l~~-ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 56 DVFTAASEKDVYGIRKDLA-DYDFAIVDGAGSL----SVITSAAVMV-SDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp EEEECCSHHHHHTHHHHTT-TSSEEEEECCSSS----SHHHHHHHHH-CSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred cEEecCcHHHHHHHHHhcC-CCCEEEEECCCCC----CHHHHHHHHH-CCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 3333333556665555544 5999999976544 2222222221 222 44444454445 6666665555
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=83.48 E-value=1.5 Score=44.69 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...|.+|.-++|+|||..|-+++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34677888999999999998888776
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.28 E-value=2.3 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=20.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHH
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~ 421 (680)
.+.+|.-++|+|||..+-+++..+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999887776553
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=1.2 Score=52.07 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=47.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
....|.+|.-.+|+|||..|-+++.... .+++.|-...++..|..|-+
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~----------~~f~~v~~~~l~s~~vGese---------------------- 556 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISIKGPELLTMWFGESE---------------------- 556 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTT----------CEEEECCHHHHHTTTCSSCH----------------------
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhC----------CceEEeccchhhccccchHH----------------------
Confidence 3567899999999999998877775431 12454444555555522111
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
..++.....-....+.+|++||+..+-
T Consensus 557 -------------~~vr~lF~~Ar~~~P~IifiDEiDsl~ 583 (806)
T 3cf2_A 557 -------------ANVREIFDKARQAAPCVLFFDELDSIA 583 (806)
T ss_dssp -------------HHHHHHHHHHHTTCSEEEECSCGGGCC
T ss_pred -------------HHHHHHHHHHHHcCCceeechhhhHHh
Confidence 112333333445668899999999873
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=82.63 E-value=5.4 Score=39.41 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=20.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.+|.-++|+|||..+-++....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 45788999999999998877766543
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=81.94 E-value=6.2 Score=41.45 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=29.3
Q ss_pred CcccHHHHHHHH-HhhhhhccCCCCceEE--EcCCCCChHHHHHHHHHHHHh
Q psy12466 375 KPHQRQGVSFLY-ERVCDLASLDLEGAIL--ADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 375 rpyQ~~gv~~l~-~~~~~~~~~~~~g~iL--aDemGlGKT~~aiali~~~~~ 423 (680)
|..+.+.+.-++ ..........+...+| .-+.|+|||..+-+++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 445555555444 3321100023445667 789999999999888877654
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=81.60 E-value=1.7 Score=47.35 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLL 422 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~ 422 (680)
.+++.+|.-.+|+|||..|-+++..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 457899999999999999999887753
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=81.40 E-value=0.83 Score=53.19 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=52.4
Q ss_pred eEEEEECcccH----HHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHH-----HHHH----HhhhcC
Q psy12466 194 RVLIVTPSSLT----SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRAY----QTIVDT 260 (680)
Q Consensus 194 ~~LIV~P~sl~----~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l-----~~~~----~~l~~~ 260 (680)
.+|||||+--+ ..|-..+-++++ .++..++|+......... ...+|++.|-+.+ +... ..+...
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~lg-l~v~~i~GG~~~~~r~~~--~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~ 193 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFLG-LTVGINLPGMPAPAKREA--YAADITYGTNNEYGFDYLRDNMAFSPEERVQR 193 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECCchhhHHHHHhhhhccHhHhccc
Confidence 58999998765 468888888886 666666665432222221 2468999887665 2221 123446
Q ss_pred CCcEEEEcCCCCCCC
Q psy12466 261 EFDLLICDEKSLLKP 275 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN 275 (680)
+..++|+||||++-.
T Consensus 194 ~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 194 KLHYALVDEVDSILI 208 (853)
T ss_dssp SCCEEEESCHHHHTT
T ss_pred CCcEEEECchHHHHH
Confidence 789999999998763
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=81.39 E-value=3.8 Score=37.14 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=22.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.+...+|.-+.|.|||..+-+++..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567888899999999998888876654
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.90 E-value=4.6 Score=39.07 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=35.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 454 (680)
.+.-.+++-++|+|||.-++.++......+. .+++++.-..-..+..+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~------~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG------EPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC------CCEEEEESSSCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC------CCceeecccCCHHHHHHHHHHc
Confidence 3445899999999999999988765433321 2478887765555555555443
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=80.89 E-value=3.7 Score=39.32 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
..+..++.-..|-|||..|++++......+. +++|+-= +.....=..++.+-++ +.+............
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-------rV~~vQF~Kg~~~~gE~~~l~~L~---v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGK-------NVGVVQFIKGTWPNGERNLLEPHG---VEFQVMATGFTWETQ 96 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTC-------CEEEEESSCCSSCCHHHHHHGGGT---CEEEECCTTCCCCGG
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEeeCCCCCccHHHHHHhCC---cEEEEcccccccCCC
Confidence 3456778899999999999999988888764 5777732 1110000111111112 111111110000000
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc---c-CcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHH
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL---K-NGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~---k-n~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sl 550 (680)
... .+ .-.--..+......+.+..+|+||+||.-.. . -+.......+..-....-+++||--. +.+|..+
T Consensus 97 ~~~--~~-~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a---p~~l~e~ 170 (196)
T 1g5t_A 97 NRE--AD-TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC---HRDILDL 170 (196)
T ss_dssp GHH--HH-HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC---CHHHHHH
T ss_pred CcH--HH-HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC---cHHHHHh
Confidence 000 00 0000122233344566678999999998432 1 12334555555545556699999654 4455444
Q ss_pred Hhhh
Q psy12466 551 NDFA 554 (680)
Q Consensus 551 l~fl 554 (680)
.+++
T Consensus 171 AD~V 174 (196)
T 1g5t_A 171 ADTV 174 (196)
T ss_dssp CSEE
T ss_pred Ccce
Confidence 4443
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=80.59 E-value=1.2 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.+|.-+.|+|||..+-+++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45788999999999999888777543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=80.43 E-value=17 Score=39.10 Aligned_cols=116 Identities=13% Similarity=0.003 Sum_probs=63.9
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCee-EeecCCcchh--
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKA-- 471 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~-~~~~~~~~~~-- 471 (680)
..+.-.+|+-.+|+|||.-++.++........ .+++++....-..++...+.......... +..+.-....
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~ 271 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEG------VGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFS 271 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------CCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHH
Confidence 34555899999999999999999887765321 25888887655556655543222111100 0011000000
Q ss_pred --hh-hhhcCCCCEEEE-----eHHHHHHHHHhhh-ccCceEEEEcCcccccCc
Q psy12466 472 --ED-YVYSRVSPVLII-----SYEMLIRAYQTIV-DTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 472 --~~-~~~~~~~~vvI~-----ty~~l~~~~~~l~-~~~~~~vIlDEaH~~kn~ 516 (680)
.. ........++|. +...+......+. ..+.++||+|..+.+...
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 00 000112345553 3444544444333 457999999999988643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 680 | ||||
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 8e-53 | |
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 1e-34 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 2e-09 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 2e-09 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 4e-08 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 2e-05 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 3e-04 |
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 182 bits (461), Expect = 8e-53
Identities = 113/278 (40%), Positives = 161/278 (57%), Gaps = 9/278 (3%)
Query: 339 LVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE 398
LV K V V VD LS+VL+PHQR+GV FL++ V +
Sbjct: 21 LVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSY 80
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLT 458
G I+ADEMGLGKTLQCI LIWTLL+Q P P I KV++V+PSSL NW +E KWLG
Sbjct: 81 GCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGR 140
Query: 459 RMC-PYHVNQKNKAEDYVYSRVS--------PVLIISYEMLIRAYQTIVDTEFDLLICDE 509
K++ + + + +S P+LIISYE + + + L+ICDE
Sbjct: 141 VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDE 200
Query: 510 GHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNF 569
GHRLKN ++ Y + +N ++R+L+SGTP+QNDL E+F L F N G+LG+ +EF+K F
Sbjct: 201 GHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRF 260
Query: 570 EEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR 607
E PIL+ R ++++ ++ GE + +L ++RR
Sbjct: 261 EIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRR 298
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 129 bits (324), Expect = 1e-34
Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 31/245 (12%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
+ L+P+Q +G S++ G LAD+MGLGKTLQ IA+ ++
Sbjct: 9 IKANLRPYQIKGFSWMRFMNKLG-----FGICLADDMGLGKTLQTIAVFSDAKKENELTP 63
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH-VNQKNKAEDYVYSRVSPVLIISYE 488
L++ P S+ NW +E K+ R +H K K EDY +++ +Y
Sbjct: 64 S-----LVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDY------DIILTTYA 112
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
+L+R + + E+ ++ DE +KN ++K+++ + L + RI L+GTP++N + + +
Sbjct: 113 VLLR-DTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLW 171
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
+ F NPG+LGS EF+ F PI K + +L + FILRRT
Sbjct: 172 SIMTFLNPGLLGSYSEFKSKFATPI------------KKGDNMAKEELKAIISPFILRRT 219
Query: 609 -SDVQ 612
D
Sbjct: 220 KYDKA 224
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 56.0 bits (134), Expect = 2e-09
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 31/166 (18%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q + + L + + G GKT +A I L
Sbjct: 71 LRDYQEKALE---------RWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLI------ 115
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA 493
+V +L W + + ++ K P+ + +Y+
Sbjct: 116 ---VVPTLALAEQWKERLGIFGEEYVGEFSGRIKELK----------PLTVSTYDSAYVN 162
Query: 494 YQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTP 539
+ + + F LLI DE H L ++ R+ L+ T
Sbjct: 163 AEKLGN-RFMLLIFDEVHHLPA--ESYVQIAQMSIAPFRLGLTATF 205
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 57.3 bits (137), Expect = 2e-09
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 608 TSDVQASLLNSKRETLLVCRATPLQQSLY------LRCVEYWDARASRDSHLSVTHALRK 661
TSD+ + L K E ++ C TPLQ+ LY + VE S LS +L+K
Sbjct: 1 TSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 60
Query: 662 ICNHPGLVQQPDMMEEEGQ 680
+CNHP L+ + + EEG
Sbjct: 61 LCNHPALIYEKCLTGEEGF 79
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 53.0 bits (126), Expect = 4e-08
Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 10/149 (6%)
Query: 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
G++L L L + ++IV ++LT+ D+F + + +
Sbjct: 137 TSAGRSLIQALLARYYLENYEG-----KILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
++D Y +PV++ +++ +++ + +F +++ DE H + +++
Sbjct: 192 GG-GASKDDKYKNDAPVVVGTWQTVVKQPKEWFS-QFGMMMNDECHLATG--KSISSIIS 247
Query: 526 GL-NIRKRILLSGTPLQNDLQEFFYLNDF 553
GL N + LSG+ Y+ F
Sbjct: 248 GLNNCMFKFGLSGSLRDGKANIMQYVGMF 276
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 42.5 bits (99), Expect = 2e-05
Identities = 29/145 (20%), Positives = 44/145 (30%), Gaps = 24/145 (16%)
Query: 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLT 458
A L G GK+ + A QG KVL++ PS + T + K G+
Sbjct: 11 AHLHAPTGSGKSTKVPAA---YAAQG-------YKVLVLNPSVAATLGFGAYMSKAHGVD 60
Query: 459 RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK-NGK 517
V YS L +D++ICDE H
Sbjct: 61 PNIRTGVRTITTGSPITYSTYGKFLADGGCSG---------GAYDIIICDECHSTDATSI 111
Query: 518 SKLYELMTGLNIR---KRILLSGTP 539
+ ++ +L + TP
Sbjct: 112 LGIGTVLDQAETAGARLVVLATATP 136
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 16/142 (11%)
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRM 460
+L G GKT + + I + V+ T E K+
Sbjct: 11 VLDFHPGAGKTRRFLPQILAECARRRLRTLVLAP---------TRVVLSEMKEA----FH 57
Query: 461 CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKL 520
+ R + + R + ++++I DE H L
Sbjct: 58 GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAA 117
Query: 521 YELMTGLNIRKR---ILLSGTP 539
IL++ TP
Sbjct: 118 RGWAAHRARANESATILMTATP 139
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 680 | |||
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.8 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.78 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.78 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.71 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.69 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.55 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.42 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.38 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.37 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.32 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.22 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.19 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.14 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.02 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 98.92 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 98.9 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 98.89 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.82 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 98.77 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.75 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 98.75 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 98.73 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 98.7 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.65 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.62 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.39 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 98.13 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.91 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 97.84 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.48 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 96.89 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.87 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.85 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 96.85 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 96.6 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.75 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 95.42 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 95.22 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.99 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.89 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 94.1 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 93.74 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 93.69 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 93.64 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 93.48 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.15 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 93.07 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.06 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 92.77 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.14 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.11 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 91.94 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 91.84 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.67 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.52 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.83 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 90.48 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.43 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.41 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.4 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.07 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.4 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.36 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 89.33 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 88.64 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.89 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 87.88 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.53 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 87.46 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.34 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 85.52 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 85.37 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.02 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.95 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 81.15 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 81.02 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 80.6 |
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=1.2e-45 Score=386.41 Aligned_cols=245 Identities=44% Similarity=0.784 Sum_probs=216.2
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
.+.+||.+...|||||++||+||++++.+.....+.|||||||||+|||+|+|+++..+...++...+..+++|||||.+
T Consensus 45 ~~~~~p~l~~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~s 124 (298)
T d1z3ix2 45 HVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS 124 (298)
T ss_dssp CEECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH
T ss_pred ceeEChhhhccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccch
Confidence 45678899999999999999999998766555678899999999999999999999999988876667778899999999
Q ss_pred hHHHHHHHHHHHhCCC-CeeEeecCCcchhhh----hh----hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 443 LTSNWNDEFKKWLGLT-RMCPYHVNQKNKAED----YV----YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 443 ll~qW~~E~~~~~~~~-~v~~~~~~~~~~~~~----~~----~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
++.||.+||.+|++.. .++.+++........ .. .....+++|++|+.+..+.+.+...+|++||+||||++
T Consensus 125 l~~qW~~Ei~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~vI~DEaH~i 204 (298)
T d1z3ix2 125 LVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRL 204 (298)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGC
T ss_pred hhHHHHHHHHhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcccccceeeeeccccccc
Confidence 9999999999999863 344444443332211 11 12346799999999999999999999999999999999
Q ss_pred cCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHH
Q psy12466 514 KNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593 (680)
Q Consensus 514 kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~ 593 (680)
+|..++.++++..+++.+||+|||||++|++.|+|++++||+|+.|++...|.+.|..|+..+...+.+..+...+..+.
T Consensus 205 kn~~s~~~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~l 284 (298)
T d1z3ix2 205 KNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (298)
T ss_dssp CTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred ccccchhhhhhhccccceeeeecchHHhhhhHHHHHHHHHhCCCcCCCHHHHHHHHhhHHHhCcccCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888889999
Q ss_pred HHHHHHhccceeee
Q psy12466 594 SQLAKRTAGFILRR 607 (680)
Q Consensus 594 ~~L~~~l~~f~lRr 607 (680)
.+|+.+++||++||
T Consensus 285 ~~L~~~l~~~~lRR 298 (298)
T d1z3ix2 285 QELISIVNRCLIRR 298 (298)
T ss_dssp HHHHHHHHHHEECC
T ss_pred HHHHHHhhhheeCC
Confidence 99999999999998
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-42 Score=349.42 Aligned_cols=225 Identities=29% Similarity=0.497 Sum_probs=194.8
Q ss_pred ccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH
Q psy12466 365 TVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444 (680)
Q Consensus 365 ~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll 444 (680)
..|+.++..|+|||++||+||+.+. ..+.|||||||||+|||+++++++..+...+. .+++|||||.+++
T Consensus 4 ~~P~~~~~~L~~yQ~~~v~~~~~~~-----~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~-----~~~~LIv~p~~l~ 73 (230)
T d1z63a1 4 LEPYNIKANLRPYQIKGFSWMRFMN-----KLGFGICLADDMGLGKTLQTIAVFSDAKKENE-----LTPSLVICPLSVL 73 (230)
T ss_dssp CCCCSCSSCCCHHHHHHHHHHHHHH-----HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-----CSSEEEEECSTTH
T ss_pred cCchhhhcchhHHHHHHHHHHHHhh-----hcCCCEEEEeCCCCChHHHHHHhhhhhhhccc-----ccccceecchhhh
Confidence 4577899999999999999998752 34679999999999999999999998887764 4579999999999
Q ss_pred HHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 445 SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 445 ~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
.||.+|+.+|++...+..++....... ...++|+|++|+.+.+. ..+...+|++||+||||+++|..+..++++
T Consensus 74 ~~W~~e~~~~~~~~~~~~~~~~~~~~~-----~~~~~vvi~~~~~~~~~-~~l~~~~~~~vI~DEah~~k~~~s~~~~~~ 147 (230)
T d1z63a1 74 KNWEEELSKFAPHLRFAVFHEDRSKIK-----LEDYDIILTTYAVLLRD-TRLKEVEWKYIVIDEAQNIKNPQTKIFKAV 147 (230)
T ss_dssp HHHHHHHHHHCTTSCEEECSSSTTSCC-----GGGSSEEEEEHHHHTTC-HHHHTCCEEEEEEETGGGGSCTTSHHHHHH
T ss_pred hHHHHHHHhhcccccceeeccccchhh-----ccCcCEEEeeHHHHHhH-HHHhcccceEEEEEhhhcccccchhhhhhh
Confidence 999999999998877776654433222 12478999999998764 456788999999999999999999999999
Q ss_pred HhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccce
Q psy12466 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604 (680)
Q Consensus 525 ~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~ 604 (680)
..+++++||+|||||++|++.|||++++|++|+.+++...|.+.|..++..+ .....++|+.++++|+
T Consensus 148 ~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~------------~~~~~~~L~~~l~~~~ 215 (230)
T d1z63a1 148 KELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG------------DNMAKEELKAIISPFI 215 (230)
T ss_dssp HTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT------------CHHHHHHHHHHHTTTE
T ss_pred hhhccceEEEEecchHHhHHHHHHHHHHhhCCCcCCCHHHHHHHHhhhhhcc------------CHHHHHHHHHHhhccE
Confidence 9999999999999999999999999999999999999999999999987654 2345678999999999
Q ss_pred eeechhH--HhhcCC
Q psy12466 605 LRRTSDV--QASLLN 617 (680)
Q Consensus 605 lRrtk~~--v~~~LP 617 (680)
+||+|++ +..+||
T Consensus 216 lRr~K~d~~v~~dLP 230 (230)
T d1z63a1 216 LRRTKYDKAIINDLP 230 (230)
T ss_dssp ECCCTTCHHHHTTSC
T ss_pred EEEecCCccHhhcCC
Confidence 9999987 567887
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=5.3e-20 Score=180.36 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=104.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+|||||+++++++.+ +++|+|+++||+|||+++++++..+ + +++|||||. +++.||.+++
T Consensus 70 ~Lr~yQ~eav~~~~~---------~~~~ll~~~tG~GKT~~a~~~~~~~---~-------~~~Liv~p~~~L~~q~~~~~ 130 (206)
T d2fz4a1 70 SLRDYQEKALERWLV---------DKRGCIVLPTGSGKTHVAMAAINEL---S-------TPTLIVVPTLALAEQWKERL 130 (206)
T ss_dssp CCCHHHHHHHHHHTT---------TSEEEEEESSSTTHHHHHHHHHHHS---C-------SCEEEEESSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHh---------CCCcEEEeCCCCCceehHHhHHHHh---c-------CceeEEEcccchHHHHHHHH
Confidence 699999999988743 3678999999999999998877543 1 258999996 7889999999
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccce
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~ 531 (680)
.+|.+. .+..+.+.. ....+++|++|+.+......+. .+|++||+||||++++. ...+.+..+.+.+
T Consensus 131 ~~~~~~-~~~~~~~~~---------~~~~~i~i~t~~~~~~~~~~~~-~~~~lvIiDEaH~~~a~--~~~~i~~~~~~~~ 197 (206)
T d2fz4a1 131 GIFGEE-YVGEFSGRI---------KELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAE--SYVQIAQMSIAPF 197 (206)
T ss_dssp GGGCGG-GEEEESSSC---------BCCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTT--THHHHHHTCCCSE
T ss_pred Hhhccc-chhhccccc---------ccccccccceehhhhhhhHhhC-CcCCEEEEECCeeCCcH--HHHHHHhccCCCc
Confidence 998654 333333321 1245799999999887665543 47999999999999653 3556677778899
Q ss_pred EEEEeCCC
Q psy12466 532 RILLSGTP 539 (680)
Q Consensus 532 rllLTgTP 539 (680)
+++||||+
T Consensus 198 ~lgLTATl 205 (206)
T d2fz4a1 198 RLGLTATF 205 (206)
T ss_dssp EEEEEESC
T ss_pred EEEEecCC
Confidence 99999997
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.78 E-value=3.3e-19 Score=182.94 Aligned_cols=166 Identities=18% Similarity=0.232 Sum_probs=117.3
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-+||+||.+|+..+++. ++|+|..++|+|||+++++++..+..... .++|||||. +|+.||.+
T Consensus 111 ~~~~rdyQ~~av~~~l~~---------~~~il~~pTGsGKT~i~~~i~~~~~~~~~------~k~Liivp~~~Lv~Q~~~ 175 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLVN---------RRRILNLPTSAGRSLIQALLARYYLENYE------GKILIIVPTTALTTQMAD 175 (282)
T ss_dssp ECCCCHHHHHHHHHHHHH---------SEEEECCCTTSCHHHHHHHHHHHHHHHCS------SEEEEECSSHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhc---------CCceeEEEcccCccHHHHHHHHHhhhccc------ceEEEEEcCchhHHHHHH
Confidence 456999999999998764 67999999999999999888877766543 469999997 89999999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-c
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-N 528 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~ 528 (680)
+|.+|.......+........ .........+++|++++.+.+....+. ..|++||+||||++++ ....+.+..+ +
T Consensus 176 ~f~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~i~i~t~qs~~~~~~~~~-~~f~~VIvDEaH~~~a--~~~~~il~~~~~ 251 (282)
T d1rifa_ 176 DFVDYRLFSHAMIKKIGGGAS-KDDKYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATG--KSISSIISGLNN 251 (282)
T ss_dssp HHHHHTSCCGGGEEECSTTCS-STTCCCTTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGGGCCH--HHHHHHTTTCTT
T ss_pred HHHHhhccccccceeecceec-ccccccccceEEEEeeehhhhhccccc-CCCCEEEEECCCCCCc--hhHHHHHHhccC
Confidence 999987543322222111111 111122357899999998865443333 3699999999999863 2334445555 6
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy12466 529 IRKRILLSGTPLQNDLQEFFYLNDFANP 556 (680)
Q Consensus 529 ~~~rllLTgTP~~n~~~el~sll~fl~p 556 (680)
+.+|++|||||-...... |.+..+++|
T Consensus 252 ~~~rlGlTaT~~~~~~~~-~~l~g~~Gp 278 (282)
T d1rifa_ 252 CMFKFGLSGSLRDGKANI-MQYVGMFGE 278 (282)
T ss_dssp CCEEEEECSSCCTTSTTH-HHHHHHHCE
T ss_pred CCeEEEEEeecCCCCcce-EEEeeecCC
Confidence 789999999996665543 455555543
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.78 E-value=3.1e-20 Score=192.39 Aligned_cols=109 Identities=29% Similarity=0.423 Sum_probs=87.8
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCC-eeEEeecCCcchhh----h----cccCCCCEEEEehhHHHHHHHhhhcCC
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAED----Y----VYSRVSPVLIISYEMLIRAYQTIVDTE 261 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~-~~~~~~~~~~~~~~----~----~~~~~~~V~itsYe~l~~~~~~l~~~~ 261 (680)
.++++|||||+|++.||++||.+|++... ...++++....... . ......+|+|+||+.+++..+.+...+
T Consensus 113 ~~~~~LIV~P~sl~~qW~~Ei~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l~~~~ 192 (298)
T d1z3ix2 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGK 192 (298)
T ss_dssp SCSCEEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSC
T ss_pred CCCcEEEEccchhhHHHHHHHHhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcccccc
Confidence 45679999999999999999999997432 23333333222111 1 112346799999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 262 FDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|++||+||||++||++++.+++++.+++.+||+|||+.
T Consensus 193 ~~~vI~DEaH~ikn~~s~~~~a~~~l~~~~rllLTGTP 230 (298)
T d1z3ix2 193 VGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTP 230 (298)
T ss_dssp CCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSC
T ss_pred eeeeecccccccccccchhhhhhhccccceeeeecchH
Confidence 99999999999999999999999999999999999865
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.71 E-value=2.4e-18 Score=171.17 Aligned_cols=124 Identities=19% Similarity=0.319 Sum_probs=101.6
Q ss_pred cCCCCCCCCCCchhHHh------------------------------------hcCCCCCeEEEEECcccHHHHHHHHHH
Q psy12466 170 EVNPLILPKPIVDHQEK------------------------------------NRRSYILRVLIVTPSSLTSNWNDEFKK 213 (680)
Q Consensus 170 ~~~p~~l~~~L~~hQ~~------------------------------------~~~~~~~~~LIV~P~sl~~nW~~E~~k 213 (680)
.++|..+...|+|||.+ .....++++|||||.+++.||.+|+.+
T Consensus 3 ~~~P~~~~~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p~~l~~~W~~e~~~ 82 (230)
T d1z63a1 3 LLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSK 82 (230)
T ss_dssp CCCCCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHH
T ss_pred CcCchhhhcchhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceecchhhhhHHHHHHHh
Confidence 35777888999999987 223456899999999999999999999
Q ss_pred HhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCce
Q psy12466 214 WLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRK 293 (680)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~ 293 (680)
|++..++..++...... ....++|+|++|+.+.+.. .+....|++||+||||++||+.++++++++.+.+.+||
T Consensus 83 ~~~~~~~~~~~~~~~~~-----~~~~~~vvi~~~~~~~~~~-~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l~a~~r~ 156 (230)
T d1z63a1 83 FAPHLRFAVFHEDRSKI-----KLEDYDIILTTYAVLLRDT-RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRI 156 (230)
T ss_dssp HCTTSCEEECSSSTTSC-----CGGGSSEEEEEHHHHTTCH-HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEE
T ss_pred hcccccceeeccccchh-----hccCcCEEEeeHHHHHhHH-HHhcccceEEEEEhhhcccccchhhhhhhhhhccceEE
Confidence 99866655554333221 1234689999999997654 46788999999999999999999999999999999999
Q ss_pred eccCCC
Q psy12466 294 SDSGIG 299 (680)
Q Consensus 294 ~LTG~~ 299 (680)
+|||+.
T Consensus 157 ~LTgTP 162 (230)
T d1z63a1 157 ALTGTP 162 (230)
T ss_dssp EECSSC
T ss_pred EEecch
Confidence 999865
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.69 E-value=1.9e-16 Score=153.32 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=113.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
++|+||.++++++.+ +++|++.++|+|||++++.++.......+ +++|+|+|. .|+.||.+++
T Consensus 9 ~pr~~Q~~~~~~~~~----------~n~lv~~pTGsGKT~i~~~~~~~~~~~~~------~~il~i~P~~~L~~q~~~~~ 72 (200)
T d1wp9a1 9 QPRIYQEVIYAKCKE----------TNCLIVLPTGLGKTLIAMMIAEYRLTKYG------GKVLMLAPTKPLVLQHAESF 72 (200)
T ss_dssp CCCHHHHHHHHHGGG----------SCEEEECCTTSCHHHHHHHHHHHHHHHSC------SCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----------CCeEEEeCCCCcHHHHHHHHHHHHHHhcC------CcEEEEcCchHHHHHHHHHH
Confidence 478999999988743 46899999999999988877665554432 359999996 7889999999
Q ss_pred HHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcccHHHHHHH--
Q psy12466 452 KKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKSKLYELMT-- 525 (680)
Q Consensus 452 ~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s~~~~~l~-- 525 (680)
.++++.. ++..+++........ .......+++++++.+...... +...++++||+||||.+.+..........
T Consensus 73 ~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~ 151 (200)
T d1wp9a1 73 RRLFNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYK 151 (200)
T ss_dssp HHHBCSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhhcccccceeeeecccchhHHH-HhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHH
Confidence 9998654 344344333322221 1223467999999998765433 23347899999999998765543332211
Q ss_pred -hcccceEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy12466 526 -GLNIRKRILLSGTPLQNDLQEFFYLNDFANPG 557 (680)
Q Consensus 526 -~l~~~~rllLTgTP~~n~~~el~sll~fl~p~ 557 (680)
.....+.++||||| .+...++..++..+...
T Consensus 152 ~~~~~~~~l~~SATp-~~~~~~~~~~~~~l~~~ 183 (200)
T d1wp9a1 152 RQAKNPLVIGLTASP-GSTPEKIMEVINNLGIE 183 (200)
T ss_dssp HHCSSCCEEEEESCS-CSSHHHHHHHHHHTTCC
T ss_pred hcCCCCcEEEEEecC-CCcHHHHHHHHhcCCce
Confidence 12344679999999 44556666666655443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.55 E-value=3.7e-14 Score=137.48 Aligned_cols=161 Identities=22% Similarity=0.247 Sum_probs=107.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+|+|||.+++..+.+ ++.++++.++|.|||..++..+......+ +++|+|||. .|+.||.+++
T Consensus 25 ~l~~~Q~~ai~~l~~---------~~~~il~apTGsGKT~~a~l~i~~~~~~~-------~~vl~l~P~~~L~~q~~~~~ 88 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFS---------GKNLLLAMPTAAGKTLLAEMAMVREAIKG-------GKSLYVVPLRALAGEKYESF 88 (202)
T ss_dssp CCCCCCHHHHHHHTT---------CSCEEEECSSHHHHHHHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEcCCCCchhHHHHHHHHHHhhcc-------CcceeecccHHHHHHHHHHH
Confidence 599999999988743 46899999999999998754443333322 258999997 6889999999
Q ss_pred HHHhCCC-CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcc--cHHHHHHHh
Q psy12466 452 KKWLGLT-RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGK--SKLYELMTG 526 (680)
Q Consensus 452 ~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~--s~~~~~l~~ 526 (680)
.++.+.. .+..+.+...... ......+++++++..+........ -..+++||+||+|.+.+.. ......+..
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~ 165 (202)
T d2p6ra3 89 KKWEKIGLRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165 (202)
T ss_dssp TTTTTTTCCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHH
T ss_pred HHHhhccccceeeccCccccc---ccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHH
Confidence 9998754 3334433322221 122457899999998876554322 2357899999999987643 222223333
Q ss_pred c----ccceEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy12466 527 L----NIRKRILLSGTPLQNDLQEFFYLNDFANPG 557 (680)
Q Consensus 527 l----~~~~rllLTgTP~~n~~~el~sll~fl~p~ 557 (680)
+ ...++++||||- . ++.++ .+||+..
T Consensus 166 i~~~~~~~~~l~lSATl-~-n~~~~---~~~l~~~ 195 (202)
T d2p6ra3 166 MRRMNKALRVIGLSATA-P-NVTEI---AEWLDAD 195 (202)
T ss_dssp HHHHCTTCEEEEEECCC-T-THHHH---HHHTTCE
T ss_pred HHhcCCCCcEEEEcCCC-C-cHHHH---HHHcCCC
Confidence 3 234679999993 3 36665 3566443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.42 E-value=3e-13 Score=122.34 Aligned_cols=125 Identities=24% Similarity=0.302 Sum_probs=84.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
..+.++|...+|+|||.+++.++. ..+ .++||+||. .+..||.+++.+++.........+..
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~---~~~-------~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~------- 69 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA---AQG-------YKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRT------- 69 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---TTT-------CCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH---HcC-------CcEEEEcChHHHHHHHHHHHHHHhhccccccccccc-------
Confidence 346789999999999987755442 222 359999997 67799999999998765444333221
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHH-HHHHhcc---cceEEEEeCCC
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLY-ELMTGLN---IRKRILLSGTP 539 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~-~~l~~l~---~~~rllLTgTP 539 (680)
......+++++++......... -.+|++||+||+|++.......+ ..+..++ ....++|||||
T Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 70 -ITTGSPITYSTYGKFLADGGCS-GGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp -ECCCCSEEEEEHHHHHHTTGGG-GCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred -cccccceEEEeeeeeccccchh-hhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 1124568889988876544332 24799999999999854433333 3333332 33579999999
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.38 E-value=6.3e-13 Score=131.93 Aligned_cols=158 Identities=16% Similarity=0.232 Sum_probs=103.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+++++|++++..++. +..+++...+|+|||..++..+..+...+ +++|||+|. .|..||.+++
T Consensus 43 ~p~~~Q~~~i~~~l~---------g~~~~i~apTGsGKT~~~~~~~~~~~~~~-------~rvliv~Pt~~La~Q~~~~l 106 (237)
T d1gkub1 43 EPRAIQKMWAKRILR---------KESFAATAPTGVGKTSFGLAMSLFLALKG-------KRCYVIFPTSLLVIQAAETI 106 (237)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEECCCCBTSCSHHHHHHHHHHHHTTS-------CCEEEEESCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC---------CCCEEEEecCCChHHHHHHHHHHHHHHhc-------CeEEEEeccHHHHHHHHHHH
Confidence 568999999987753 46789999999999988766655554443 359999996 7889999999
Q ss_pred HHHhCCCCee------EeecCCcchh--hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH
Q psy12466 452 KKWLGLTRMC------PYHVNQKNKA--EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL 523 (680)
Q Consensus 452 ~~~~~~~~v~------~~~~~~~~~~--~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~ 523 (680)
++|+....+. .+.+...... .........+|+|+|++.+.+....+ .+|++||+||+|.+-.......+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~~~~--~~~~~vVvDE~d~~l~~~~~~~~~ 184 (237)
T d1gkub1 107 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYREL--GHFDFIFVDDVDAILKASKNVDKL 184 (237)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTS--CCCSEEEESCHHHHHTSTHHHHHH
T ss_pred HHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhhhhc--CCCCEEEEEChhhhhhcccchhHH
Confidence 9997654321 1122222111 11222345789999999887654333 368999999999875433333333
Q ss_pred HHhc--------------ccceEEEEeCCCCCCCHHHHH
Q psy12466 524 MTGL--------------NIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 524 l~~l--------------~~~~rllLTgTP~~n~~~el~ 548 (680)
+..+ .....+++|||+-+.....++
T Consensus 185 ~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~ 223 (237)
T d1gkub1 185 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELF 223 (237)
T ss_dssp HHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHH
T ss_pred HHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHH
Confidence 3221 111258899997544444443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.37 E-value=2.2e-13 Score=122.57 Aligned_cols=128 Identities=18% Similarity=0.152 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
++..++|..++|+|||.+++..+........ ..++|++|...+ .||.+.+. ...+.+.......
T Consensus 6 ~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~------~~vli~~p~~~l~~q~~~~~~----~~~~~~~~~~~~~----- 70 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRR------LRTLVLAPTRVVLSEMKEAFH----GLDVKFHTQAFSA----- 70 (140)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTT------CCEEEEESSHHHHHHHHHHTT----TSCEEEESSCCCC-----
T ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhhhcC------ceeeeeecchhHHHHHHHHhh----hhhhhhccccccc-----
Confidence 5678999999999999998765444333322 358999998544 44444332 2222222111111
Q ss_pred hhcCCCCEEEEeHHHHHHHH-HhhhccCceEEEEcCcccccCcccHHHH----HHHhcccceEEEEeCCC
Q psy12466 475 VYSRVSPVLIISYEMLIRAY-QTIVDTEFDLLICDEGHRLKNGKSKLYE----LMTGLNIRKRILLSGTP 539 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~-~~l~~~~~~~vIlDEaH~~kn~~s~~~~----~l~~l~~~~rllLTgTP 539 (680)
.......+..+++..+.... ......+|++||+||||.+.. .+...+ .+......+.++|||||
T Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH~~~~-~~~~~~~~~~~~~~~~~~~~l~lTATP 139 (140)
T d1yksa1 71 HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDP-ASIAARGWAAHRARANESATILMTATP 139 (140)
T ss_dssp CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSH-HHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred ccccccchhhhhHHHHHHHHhccccccceeEEEEccccccCh-hhHHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 11123456777777765432 233345899999999998732 222211 12223566889999999
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=3e-12 Score=128.16 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=114.4
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-.|-+-|+.+++-+.+. +........+|..++|+|||.+++..+......+. .++++||. .|..|+.+
T Consensus 81 PFeLT~~Q~~ai~ei~~d---~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~-------q~~~m~Pt~~La~Qh~~ 150 (264)
T d1gm5a3 81 PFKLTNAQKRAHQEIRND---MISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF-------QTAFMVPTSILAIQHYR 150 (264)
T ss_dssp SSCCCHHHHHHHHHHHHH---HHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS-------CEEEECSCHHHHHHHHH
T ss_pred cccCCchHHHHHHHHHHH---hhccCcceeeeeccccccccHHHHHHHHHHHhccc-------ceeEEeehHhhhHHHHH
Confidence 345788999999988764 33455667899999999999999988877777764 38999998 55699999
Q ss_pred HHHHHhCCC--CeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH
Q psy12466 450 EFKKWLGLT--RMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL 523 (680)
Q Consensus 450 E~~~~~~~~--~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~ 523 (680)
.|.++++.. .+.++++....... .....+..+|+|.|+..+.... .-.+.++||+||-|++.-. +....
T Consensus 151 ~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~---~f~~LglviiDEqH~fgv~--Qr~~l 225 (264)
T d1gm5a3 151 RTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV---HFKNLGLVIIDEQHRFGVK--QREAL 225 (264)
T ss_dssp HHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC---CCSCCCEEEEESCCCC-------CCC
T ss_pred HHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCC---Cccccceeeeccccccchh--hHHHH
Confidence 999999854 56666665544332 2233577899999999886432 2235789999999998321 11111
Q ss_pred HHhcccceEEEEeCCCCCCCHHH
Q psy12466 524 MTGLNIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 524 l~~l~~~~rllLTgTP~~n~~~e 546 (680)
...-+..+.++|||||+..++.-
T Consensus 226 ~~~~~~~~~l~~SATPiprtl~~ 248 (264)
T d1gm5a3 226 MNKGKMVDTLVMSATPIPRSMAL 248 (264)
T ss_dssp CSSSSCCCEEEEESSCCCHHHHH
T ss_pred HHhCcCCCEEEEECCCCHHHHHH
Confidence 11113457899999999987643
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=9.9e-12 Score=120.26 Aligned_cols=165 Identities=16% Similarity=0.115 Sum_probs=104.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
++||||.+++..+++ +..+++...+|.|||..++..+. . . .+++++++|. .+..||.+++
T Consensus 25 ~~rp~Q~~ai~~~l~---------g~~vlv~apTGsGKT~~~~~~~~--~-~-------~~~~~~v~P~~~L~~q~~~~l 85 (206)
T d1oywa2 25 QFRPGQEEIIDTVLS---------GRDCLVVMPTGGGKSLCYQIPAL--L-L-------NGLTVVVSPLISLMKDQVDQL 85 (206)
T ss_dssp SCCTTHHHHHHHHHT---------TCCEEEECSCHHHHHHHHHHHHH--H-S-------SSEEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEcCCCCCCcchhhhhhh--h-c-------cCceEEeccchhhhhhHHHHH
Confidence 589999999987753 46899999999999987644332 2 1 2468999997 7779999999
Q ss_pred HHHhCCCCeeEeecCCcc--hhhhhhhcCCCCEEEEeHHHHHHH--HHhhhccCceEEEEcCcccccCccc---HH----
Q psy12466 452 KKWLGLTRMCPYHVNQKN--KAEDYVYSRVSPVLIISYEMLIRA--YQTIVDTEFDLLICDEGHRLKNGKS---KL---- 520 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~vvI~ty~~l~~~--~~~l~~~~~~~vIlDEaH~~kn~~s---~~---- 520 (680)
+.+............... ............+++++...+... ........++++|+||||.+..... ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~ 165 (206)
T d1oywa2 86 QANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAAL 165 (206)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGG
T ss_pred HhhcccccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHHHHHH
Confidence 887543211111111111 112223445678999988776432 2233445689999999998855322 11
Q ss_pred HHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy12466 521 YELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANP 556 (680)
Q Consensus 521 ~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p 556 (680)
......+....+++||||+-..-..|+...+.+-+|
T Consensus 166 ~~l~~~~~~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 166 GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp GGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred HHHHHhCCCCceEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 112223345567999999743223567776666555
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.5e-10 Score=113.46 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=113.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|-+-|..++.-+.+.+ ........+|.-++|.|||..++..+......+. .+++++|. .|..|+.+.|
T Consensus 55 ~lt~~Q~~~~~~i~~~~---~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~-------qv~~l~Pt~~La~Q~~~~~ 124 (233)
T d2eyqa3 55 ETTPDQAQAINAVLSDM---CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK-------QVAVLVPTTLLAQQHYDNF 124 (233)
T ss_dssp CCCHHHHHHHHHHHHHH---HSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTC-------EEEEECSSHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHH---hccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCC-------ceEEEccHHHhHHHHHHHH
Confidence 46778999998887753 3345567899999999999999998888877664 59999998 5569999999
Q ss_pred HHHhCCCC--eeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 452 KKWLGLTR--MCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~~--v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
+++++... +..+++....... .....+..+|+|.|+..+.. .+.-.+..+||+||-|++. .+.-..++
T Consensus 125 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~---~~~f~~LgLiIiDEeH~fg---~kQ~~~l~ 198 (233)
T d2eyqa3 125 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS---DVKFKDLGLLIVDEEHRFG---VRHKERIK 198 (233)
T ss_dssp HHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS---CCCCSSEEEEEEESGGGSC---HHHHHHHH
T ss_pred HHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhcc---CCccccccceeeechhhhh---hHHHHHHH
Confidence 99988754 4455555443322 22345678999999988753 2233468899999999862 22222333
Q ss_pred h-cccceEEEEeCCCCCCCHH
Q psy12466 526 G-LNIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 526 ~-l~~~~rllLTgTP~~n~~~ 545 (680)
. ....+.+++||||+..++.
T Consensus 199 ~~~~~~~~l~~SATPiprtl~ 219 (233)
T d2eyqa3 199 AMRANVDILTLTATPIPRTLN 219 (233)
T ss_dssp HHHTTSEEEEEESSCCCHHHH
T ss_pred hhCCCCCEEEEecchhHHHHH
Confidence 2 2445889999999987654
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.14 E-value=1.4e-11 Score=119.43 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=70.7
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKS 271 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH 271 (680)
+++|||||. +|+.||.+||++|.+ ..+..+.+.. ....+++|++|+.+......+. ..|++||+||+|
T Consensus 111 ~~~Liv~p~~~L~~q~~~~~~~~~~-~~~~~~~~~~---------~~~~~i~i~t~~~~~~~~~~~~-~~~~lvIiDEaH 179 (206)
T d2fz4a1 111 TPTLIVVPTLALAEQWKERLGIFGE-EYVGEFSGRI---------KELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVH 179 (206)
T ss_dssp SCEEEEESSHHHHHHHHHHHGGGCG-GGEEEESSSC---------BCCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSS
T ss_pred CceeEEEcccchHHHHHHHHHhhcc-cchhhccccc---------ccccccccceehhhhhhhHhhC-CcCCEEEEECCe
Confidence 578999995 678899999999875 3334433321 1345799999999987766553 479999999999
Q ss_pred CCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 272 LLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 272 ~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
++++. ...+.+..+.+.+|++|||+-
T Consensus 180 ~~~a~--~~~~i~~~~~~~~~lgLTATl 205 (206)
T d2fz4a1 180 HLPAE--SYVQIAQMSIAPFRLGLTATF 205 (206)
T ss_dssp CCCTT--THHHHHHTCCCSEEEEEEESC
T ss_pred eCCcH--HHHHHHhccCCCcEEEEecCC
Confidence 99854 344566777888899999874
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.02 E-value=2.2e-09 Score=103.76 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=103.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+.|.|.+++..+++ +....++...+|.|||+..+..+........ ...+||+||. .+..|..+.+
T Consensus 26 ~pt~iQ~~~ip~~l~--------g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~-----~~~~lil~pt~~l~~q~~~~~ 92 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLN--------DEYNIVAQARTGSGKTASFAIPLIELVNENN-----GIEAIILTPTRELAIQVADEI 92 (208)
T ss_dssp SCCHHHHHHHHHHHH--------TCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-----SCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--------CCCCeeeechhcccccceeeccccccccccc-----CcceEEEeeccccchhhhhhh
Confidence 366789999977754 1235677789999999987665544333221 2358999997 6779999999
Q ss_pred HHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHHH
Q psy12466 452 KKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~ 525 (680)
.++.... ++....+....... .......+|+|+|.+.+.+.... +.-.+..++|+||||++-+. .....+.+.
T Consensus 93 ~~~~~~~~~~v~~~~g~~~~~~~-~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~ 171 (208)
T d1hv8a1 93 ESLKGNKNLKIAKIYGGKAIYPQ-IKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILN 171 (208)
T ss_dssp HHHHCSSCCCEEEECTTSCHHHH-HHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHH
T ss_pred hhhcccCCeEEEEeeCCCChHHH-HHhcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCChHHHHHHHH
Confidence 9887554 44444444332222 22223578999999887665432 12245779999999987433 333444555
Q ss_pred hcc-cceEEEEeCCCCCCCHHHHH
Q psy12466 526 GLN-IRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 526 ~l~-~~~rllLTgTP~~n~~~el~ 548 (680)
.++ ....+++|||. .+.+.++.
T Consensus 172 ~~~~~~Q~i~~SAT~-~~~v~~~~ 194 (208)
T d1hv8a1 172 ACNKDKRILLFSATM-PREILNLA 194 (208)
T ss_dssp TSCSSCEEEEECSSC-CHHHHHHH
T ss_pred hCCCCCeEEEEEccC-CHHHHHHH
Confidence 554 34568889994 44444443
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=7.3e-09 Score=99.91 Aligned_cols=161 Identities=12% Similarity=0.133 Sum_probs=102.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHH-HHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL-IWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aial-i~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+.|-|..++-.+++ ++..++...+|+|||+..+.- +..+..... ...+||+||. .+..|=.++
T Consensus 25 ~pt~iQ~~aip~il~---------g~dvl~~a~TGsGKTlayllP~l~~~~~~~~-----~~~~lil~pt~el~~q~~~~ 90 (206)
T d1veca_ 25 KPSPIQEESIPIALS---------GRDILARAKNGTGKSGAYLIPLLERLDLKKD-----NIQAMVIVPTRELALQVSQI 90 (206)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCSSSTTHHHHHHHHHHHCCTTSC-----SCCEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCEEeeccCccccccccccchhhccccccc-----CcceEEEeecchhhHHHHHH
Confidence 467899999988753 478999999999999875443 333222221 2358999998 455666666
Q ss_pred HHHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHH
Q psy12466 451 FKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYEL 523 (680)
Q Consensus 451 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~ 523 (680)
+.++.. ........+...............+++|+|.+.+...... +.-....++|+||||.+-+. .......
T Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I 170 (206)
T d1veca_ 91 CIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 170 (206)
T ss_dssp HHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHHHH
Confidence 666543 3334444444433333334456789999999988765442 22235679999999988653 3344445
Q ss_pred HHhc-ccceEEEEeCCCCCCCHHHHH
Q psy12466 524 MTGL-NIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~~n~~~el~ 548 (680)
+..+ +....+++|||- .+.+.++.
T Consensus 171 ~~~~~~~~Q~~l~SAT~-~~~v~~l~ 195 (206)
T d1veca_ 171 ILTLPKNRQILLYSATF-PLSVQKFM 195 (206)
T ss_dssp HHHSCTTCEEEEEESCC-CHHHHHHH
T ss_pred HHhCCCCCEEEEEEecC-CHHHHHHH
Confidence 5555 344578889995 44444443
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=98.90 E-value=1.7e-08 Score=99.47 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=111.6
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCC----CCCccceEEEEecc-chHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPY----GMPVIRKVLIVTPS-SLTS 445 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~----~~~~~~~~LIV~P~-sll~ 445 (680)
..+.|.|..++-.+++ +...++...+|+|||+.- +.++..+...... .......+||+||. .+..
T Consensus 42 ~~pt~iQ~~~ip~il~---------g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~ 112 (238)
T d1wrba1 42 QRPTPIQKNAIPAILE---------HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAI 112 (238)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHhhhhhC---------CCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhc
Confidence 3466899999988763 478999999999999985 4455555432211 11122358999998 6779
Q ss_pred HHHHHHHHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccH
Q psy12466 446 NWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSK 519 (680)
Q Consensus 446 qW~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~ 519 (680)
|..+++..+..... +....+...............+|+|+|.+.+...... +.-.+..++|+||||.+-.. ...
T Consensus 113 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~ 192 (238)
T d1wrba1 113 QILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQ 192 (238)
T ss_dssp HHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHH
T ss_pred chheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHH
Confidence 99999988876544 4444444443333334456789999999999876543 22236789999999987433 344
Q ss_pred HHHHHHhcc-----cceEEEEeCCCCCCCHHHHHH
Q psy12466 520 LYELMTGLN-----IRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 520 ~~~~l~~l~-----~~~rllLTgTP~~n~~~el~s 549 (680)
..+.+..++ ....+++||| +..++.++..
T Consensus 193 i~~Il~~~~~~~~~~~Q~il~SAT-~~~~v~~l~~ 226 (238)
T d1wrba1 193 IRKIIEESNMPSGINRQTLMFSAT-FPKEIQKLAA 226 (238)
T ss_dssp HHHHHHSSCCCCGGGCEEEEEESS-CCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCEEEEEeee-CCHHHHHHHH
Confidence 555555542 2346999999 5556666544
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.3e-08 Score=98.08 Aligned_cols=163 Identities=12% Similarity=0.148 Sum_probs=103.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
++.|.|..++-.+++ ++..++...+|+|||+..+.-+........ . ...+||+||. .+..|..+.+
T Consensus 23 ~pt~iQ~~aip~il~---------g~dvl~~A~TGsGKTla~~lp~l~~~~~~~-~---~~~~lil~PtreL~~qi~~~~ 89 (207)
T d1t6na_ 23 HPSEVQHECIPQAIL---------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT-G---QVSVLVMCHTRELAFQISKEY 89 (207)
T ss_dssp CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHCCCCT-T---CCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCeEEEeccccccccccccceeeeecccC-C---CceEEEEeccchhhHHHHHHH
Confidence 477899999988764 478999999999999885443322222211 1 2258999997 6778888888
Q ss_pred HHHhCC---CCeeEeecCCcchh-hhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc---cHHHH
Q psy12466 452 KKWLGL---TRMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK---SKLYE 522 (680)
Q Consensus 452 ~~~~~~---~~v~~~~~~~~~~~-~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~---s~~~~ 522 (680)
..+... .+.....+...... .........+|+|+|.+.+...... +.-.+..++|+||||++-... .....
T Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~ 169 (207)
T d1t6na_ 90 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 169 (207)
T ss_dssp HHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHH
T ss_pred HHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHHHHH
Confidence 777643 33444444433332 2222345679999999998776543 122346799999999875421 11223
Q ss_pred HHHhcc-cceEEEEeCCCCCCCHHHHHH
Q psy12466 523 LMTGLN-IRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 523 ~l~~l~-~~~rllLTgTP~~n~~~el~s 549 (680)
.+..+. ....+++|||- ..++.++..
T Consensus 170 I~~~~~~~~Q~il~SAT~-~~~v~~l~~ 196 (207)
T d1t6na_ 170 IFRMTPHEKQVMMFSATL-SKEIRPVCR 196 (207)
T ss_dssp HHHTSCSSSEEEEEESCC-CTTTHHHHH
T ss_pred HHHhCCCCCEEEEEeeeC-CHHHHHHHH
Confidence 333443 34468889994 566666544
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2.2e-08 Score=97.61 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=100.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHH-HHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL-IWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aial-i~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+.|.|..++-.+++ ++..+....+|+|||+..+.- +..+..... ....||+||+ .+..|=.+
T Consensus 38 ~~pt~IQ~~aIp~il~---------g~dvi~~a~TGSGKTlayllPil~~l~~~~~-----~~~~lil~PtreLa~Qi~~ 103 (222)
T d2j0sa1 38 EKPSAIQQRAIKQIIK---------GRDVIAQSQSGTGKTATFSISVLQCLDIQVR-----ETQALILAPTRELAVQIQK 103 (222)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHTCCTTSC-----SCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHC---------CCCeEEEcCcchhhhhhhccccccccccccc-----CceeEEecchHHHHHHHHH
Confidence 3467899999988764 478999999999999875443 333222211 2348999998 56677777
Q ss_pred HHHHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 450 EFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 450 E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
++.++.... ++....+...............+|+|+|.+.+...... +.-....++|+||||++-+.+ ......
T Consensus 104 ~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I 183 (222)
T d2j0sa1 104 GLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 183 (222)
T ss_dssp HHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHHH
Confidence 788876443 44444444443333333334578999999998765432 122356799999999986643 334444
Q ss_pred HHhcc-cceEEEEeCCC
Q psy12466 524 MTGLN-IRKRILLSGTP 539 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP 539 (680)
+..++ ....+++|||-
T Consensus 184 ~~~l~~~~Q~ilfSAT~ 200 (222)
T d2j0sa1 184 YRYLPPATQVVLISATL 200 (222)
T ss_dssp HTTSCTTCEEEEEESCC
T ss_pred HHhCCCCCEEEEEEEeC
Confidence 55553 44568889995
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=5.8e-08 Score=94.24 Aligned_cols=162 Identities=13% Similarity=0.144 Sum_probs=104.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+.|.|..++-.++. ++..+++..+|+|||+..+. ++..+.... ...++||+||+ .+..|=.+
T Consensus 33 ~~pt~iQ~~aip~il~---------g~dvl~~a~TGsGKTlayllp~l~~i~~~~-----~~~~alil~Pt~eL~~Q~~~ 98 (218)
T d2g9na1 33 EKPSAIQQRAILPCIK---------GYDVIAQAQSGTGKTATFAISILQQIELDL-----KATQALVLAPTRELAQQIQK 98 (218)
T ss_dssp CSCCHHHHHHHHHHHH---------TCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----CSCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEcccchhhhhhhhhhhhheecccc-----cCccEEEEcccchhhhhHHH
Confidence 3467899999988864 47799999999999998654 333332221 12358999998 56688888
Q ss_pred HHHHHhCCCCeeE--eec-CCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHH
Q psy12466 450 EFKKWLGLTRMCP--YHV-NQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYE 522 (680)
Q Consensus 450 E~~~~~~~~~v~~--~~~-~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~ 522 (680)
++.++........ ..+ ...............+|+|+|...+...+.. +.-....++|+||||.+-+. ......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~ 178 (218)
T d2g9na1 99 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYD 178 (218)
T ss_dssp HHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHH
T ss_pred HHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHHH
Confidence 8888875543322 222 2222222233334678999999988776543 22235789999999998543 344445
Q ss_pred HHHhccc-ceEEEEeCCCCCCCHHHHH
Q psy12466 523 LMTGLNI-RKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 523 ~l~~l~~-~~rllLTgTP~~n~~~el~ 548 (680)
.+..++. ..++++|||- .+++.++.
T Consensus 179 Il~~~~~~~Q~il~SAT~-~~~v~~~~ 204 (218)
T d2g9na1 179 IFQKLNSNTQVVLLSATM-PSDVLEVT 204 (218)
T ss_dssp HHHHSCTTCEEEEEESCC-CHHHHHHH
T ss_pred HHHhCCCCCeEEEEEecC-CHHHHHHH
Confidence 5556644 4567889987 33455543
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.75 E-value=1.6e-09 Score=112.93 Aligned_cols=64 Identities=36% Similarity=0.554 Sum_probs=52.9
Q ss_pred chhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHhccCccccCC
Q psy12466 608 TSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPGLVQQ 671 (680)
Q Consensus 608 tk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------~~~~~l~~l~~LRqicnHP~L~~~ 671 (680)
|.+.+.+.||+|.+++++|+||+.|+++|+.+++...... ....+|..+++|||+||||+|+..
T Consensus 1 t~~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~ 70 (346)
T d1z3ix1 1 TSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 70 (346)
T ss_dssp CGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred ChhhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHhCCHHHhhh
Confidence 3455667899999999999999999999999987664332 234689999999999999999753
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=98.75 E-value=1.4e-09 Score=110.31 Aligned_cols=103 Identities=19% Similarity=0.314 Sum_probs=68.0
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKS 271 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH 271 (680)
.++|||||. +|+.||.+||.+|.......+....+.. ..........+|+++++..+......+. ..|++||+||||
T Consensus 158 ~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~i~t~qs~~~~~~~~~-~~f~~VIvDEaH 235 (282)
T d1rifa_ 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGA-SKDDKYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECH 235 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTC-SSTTCCCTTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGG
T ss_pred ceEEEEEcCchhHHHHHHHHHHhhccccccceeeccee-cccccccccceEEEEeeehhhhhccccc-CCCCEEEEECCC
Confidence 589999995 7899999999999753333333222211 1112233457899999988755443332 359999999999
Q ss_pred CCCCCCCCCCccccCC-CCCCceeccCCC
Q psy12466 272 LLKPPSGNSPGNDSGI-PSLPRKSDSGIG 299 (680)
Q Consensus 272 ~lKN~~s~~~~a~~~l-~~~~r~~LTG~~ 299 (680)
+.+.+. ..+.+..+ .+.+|+.|||+.
T Consensus 236 ~~~a~~--~~~il~~~~~~~~rlGlTaT~ 262 (282)
T d1rifa_ 236 LATGKS--ISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp GCCHHH--HHHHTTTCTTCCEEEEECSSC
T ss_pred CCCchh--HHHHHHhccCCCeEEEEEeec
Confidence 998532 22333344 567799999874
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=98.73 E-value=1.1e-08 Score=103.89 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=81.8
Q ss_pred CCCCceEEEcCCCCChHHHHH-HHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCI-ALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~ai-ali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
..++.+|+...+|.|||...+ +++......+ .++||++|. .|..||.+++............
T Consensus 7 ~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~-------~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~--------- 70 (305)
T d2bmfa2 7 RKKRLTIMDLHPGAGKTKRYLPAIVREAIKRG-------LRTLILAPTRVVAAEMEEALRGLPIRYQTPAI--------- 70 (305)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHHT-------CCEEEEESSHHHHHHHHHHTTTSCCBCCC------------
T ss_pred hcCCcEEEEECCCCCHHHHHHHHHHHHHHhcC-------CEEEEEccHHHHHHHHHHHHhcCCcceeeeEE---------
Confidence 356789999999999997654 4444444433 259999997 7779998887764322111100
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHHHHHHhc---ccceEEEEeCCCCCC
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLYELMTGL---NIRKRILLSGTPLQN 542 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l---~~~~rllLTgTP~~n 542 (680)
.........++++++..+...... ..-.+++++|+||+|.+-.........+..+ .....+++||||...
T Consensus 71 ~~~~~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~~~~~v~~SAT~~~~ 144 (305)
T d2bmfa2 71 RAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGS 144 (305)
T ss_dssp -----CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred eecccCccccccCCcHHHHHHHhcCccccceeEEEeeeeeecchhhHHHHHHHHHhhccccceEEEeecCCCcc
Confidence 111223567999999988664322 1123689999999998843322222222222 344679999999543
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.70 E-value=1.1e-07 Score=91.20 Aligned_cols=162 Identities=11% Similarity=0.048 Sum_probs=96.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~ 448 (680)
.+.|.|.+++..+++ ++..++...+|+|||+..+.-+........ .....++++|.... .++.
T Consensus 23 ~pt~iQ~~aip~~l~---------G~dvii~a~TGSGKTlayllp~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 89 (209)
T d1q0ua_ 23 KPTEIQERIIPGALR---------GESMVGQSQTGTGKTHAYLLPIMEKIKPER----AEVQAVITAPTRELATQIYHET 89 (209)
T ss_dssp SCCHHHHHHHHHHHH---------TCCEEEECCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC---------CCCeEeecccccccceeeeeeecccccccc----ccccccccccccchhHHHHHHH
Confidence 467899999988865 467999999999999865443332222211 12347888886433 3344
Q ss_pred HHHHHHhCC---CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHH
Q psy12466 449 DEFKKWLGL---TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLY 521 (680)
Q Consensus 449 ~E~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~ 521 (680)
....++... ..+....+...............+|+|+|.+.+...... ..-.+..++|+||||.+-+.+ ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~ 169 (209)
T d1q0ua_ 90 LKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVD 169 (209)
T ss_dssp HHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHH
T ss_pred HhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHHHHH
Confidence 444443322 122222222222222222334678999999998775433 222457899999999985543 3344
Q ss_pred HHHHhcc-cceEEEEeCCCCCCCHHHHH
Q psy12466 522 ELMTGLN-IRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 522 ~~l~~l~-~~~rllLTgTP~~n~~~el~ 548 (680)
..+..++ ....+++|||- .+.+.++.
T Consensus 170 ~I~~~~~~~~Q~il~SATl-~~~v~~l~ 196 (209)
T d1q0ua_ 170 QIAARMPKDLQMLVFSATI-PEKLKPFL 196 (209)
T ss_dssp HHHHTSCTTCEEEEEESCC-CGGGHHHH
T ss_pred HHHHHCCCCCEEEEEEccC-CHHHHHHH
Confidence 4455553 44568899995 55555553
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=2.5e-07 Score=88.77 Aligned_cols=161 Identities=13% Similarity=0.117 Sum_probs=99.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHH-HHHHHhcCCCCCCccceEEEEeccch-HHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL-IWTLLRQGPYGMPVIRKVLIVTPSSL-TSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aial-i~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~E 450 (680)
.+.|.|..++-.+++ ++..++...+|.|||+..+.- +..+.... .....++++|... ..+=...
T Consensus 23 ~pt~iQ~~aip~il~---------g~dvi~~a~tGsGKTlay~lp~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 88 (206)
T d1s2ma1 23 KPSPIQEEAIPVAIT---------GRDILARAKNGTGKTAAFVIPTLEKVKPKL-----NKIQALIMVPTRELALQTSQV 88 (206)
T ss_dssp SCCHHHHHHHHHHHH---------TCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEecCCcchhhhhhcccccccccccc-----ccccceeeccchhhhhhhhhh
Confidence 467889999988765 367999999999999765332 22222111 1234788888743 3333333
Q ss_pred HHHHh--CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCc--ccHHHHHH
Q psy12466 451 FKKWL--GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNG--KSKLYELM 524 (680)
Q Consensus 451 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~--~s~~~~~l 524 (680)
+..+. ...++....+...............+|+|+|...+.+....- .-.+..++|+||||.+-+. .......+
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~ 168 (206)
T d1s2ma1 89 VRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQIL 168 (206)
T ss_dssp HHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHH
T ss_pred hhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHHHH
Confidence 33333 334555555554444333334467899999999998766531 1235678999999998654 23333444
Q ss_pred Hhcc-cceEEEEeCCCCCCCHHHHH
Q psy12466 525 TGLN-IRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~~n~~~el~ 548 (680)
..++ ....+++||| +..++.++.
T Consensus 169 ~~l~~~~Q~il~SAT-l~~~v~~~~ 192 (206)
T d1s2ma1 169 SFLPPTHQSLLFSAT-FPLTVKEFM 192 (206)
T ss_dssp TTSCSSCEEEEEESC-CCHHHHHHH
T ss_pred HhCCCCCEEEEEEEe-CCHHHHHHH
Confidence 4443 4457888999 455555543
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=2.8e-07 Score=88.86 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=100.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+.|.|..++..+++ ++..++...+|+|||...+. ++..+.... . .-.+||+||. .+..|=..
T Consensus 31 ~~pt~iQ~~aip~il~---------g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~--~---~~~~lil~pt~el~~q~~~ 96 (212)
T d1qdea_ 31 EEPSAIQQRAIMPIIE---------GHDVLAQAQSGTGKTGTFSIAALQRIDTSV--K---APQALMLAPTRELALQIQK 96 (212)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHCCTTC--C---SCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEeecccccchhhhhHhhhHhhhhccC--C---CcceEEEcccHHHhhhhhh
Confidence 3577899999988753 47899999999999997544 333332221 1 2258999998 45577666
Q ss_pred HHHHHhCCCCeeEeecCCcc-hhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccC--cccHHHHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKN-KAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKN--GKSKLYELM 524 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn--~~s~~~~~l 524 (680)
.+..+............... ...........+|+|+|.+.+...... +.-.+..++|+||||.+-+ ......+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~ 176 (212)
T d1qdea_ 97 VVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 176 (212)
T ss_dssp HHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHH
T ss_pred hhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHHHH
Confidence 77666554433333222211 111222234578999999988775443 1123578999999999854 334444445
Q ss_pred Hhcc-cceEEEEeCCCCCCCHHHHHH
Q psy12466 525 TGLN-IRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~~n~~~el~s 549 (680)
..++ ....+++|||- .+++.++..
T Consensus 177 ~~~~~~~Q~vl~SAT~-~~~v~~l~~ 201 (212)
T d1qdea_ 177 TLLPPTTQVVLLSATM-PNDVLEVTT 201 (212)
T ss_dssp HHSCTTCEEEEEESSC-CHHHHHHHH
T ss_pred HhCCCCCeEEEEEeeC-CHHHHHHHH
Confidence 5554 34568889995 445555543
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.39 E-value=1.6e-07 Score=92.54 Aligned_cols=56 Identities=30% Similarity=0.401 Sum_probs=47.4
Q ss_pred cEEEEEEecCCHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHhccCccccCCCCC
Q psy12466 619 KRETLLVCRATPLQQSLYLRCVEYWDARA-------SRDSHLSVTHALRKICNHPGLVQQPDM 674 (680)
Q Consensus 619 k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-------~~~~~l~~l~~LRqicnHP~L~~~~~~ 674 (680)
|+|++|+|+|||+|+++|+.+++...... ....+|..+++|||+||||+|+.+...
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~~ 63 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ 63 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhcCCcccccccc
Confidence 67999999999999999999998876554 334568899999999999999876543
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.13 E-value=2.3e-07 Score=88.06 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=58.5
Q ss_pred CeEEEEEC-cccHHHHHHHHHHHhCCCCeeEE--eecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTP-SSLTSNWNDEFKKWLGLTRMCPY--HVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P-~sl~~nW~~E~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
+++|+||| .+|+.||.++|.++++.....+. +++........ ......+++++++.+...... +.-..+++||+
T Consensus 53 ~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIi 131 (200)
T d1wp9a1 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVF 131 (200)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred CcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHH-hhhcccccccccchhHHHHhhhhhhccccceEEE
Confidence 57999999 57789999999999864444433 33322222111 113458999999999765442 33356999999
Q ss_pred cCCCCCCCCCCC
Q psy12466 268 DEKSLLKPPSGN 279 (680)
Q Consensus 268 DEaH~lKN~~s~ 279 (680)
||+|.+.+....
T Consensus 132 DE~H~~~~~~~~ 143 (200)
T d1wp9a1 132 DEAHRAVGNYAY 143 (200)
T ss_dssp ETGGGCSTTCHH
T ss_pred EehhhhhcchhH
Confidence 999999876543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.91 E-value=2.3e-06 Score=75.83 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=50.3
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCC
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKS 271 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH 271 (680)
.++||+||.. |..||.++|.+|++....... .+. .......+.++++....+...... ..|++||+||+|
T Consensus 34 ~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vIiDE~H 104 (136)
T d1a1va1 34 YKVLVLNPSVAATLGFGAYMSKAHGVDPNIRT-GVR-------TITTGSPITYSTYGKFLADGGCSG-GAYDIIICDECH 104 (136)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHSCCCEEEC-SSC-------EECCCCSEEEEEHHHHHHTTGGGG-CCCSEEEEETTT
T ss_pred CcEEEEcChHHHHHHHHHHHHHHhhccccccc-ccc-------ccccccceEEEeeeeeccccchhh-hcCCEEEEeccc
Confidence 4799999975 578999999999863322221 111 122345688888887765443322 469999999999
Q ss_pred CCCC
Q psy12466 272 LLKP 275 (680)
Q Consensus 272 ~lKN 275 (680)
.+..
T Consensus 105 ~~~~ 108 (136)
T d1a1va1 105 STDA 108 (136)
T ss_dssp CCSH
T ss_pred ccCH
Confidence 9854
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.84 E-value=9.1e-06 Score=77.00 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=57.5
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhCC-CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc--CCCcEEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLGL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLIC 267 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~--~~~~~vI~ 267 (680)
.+++|+|||.. |+.+|.++|++|++. .++..+.++.... . .......|+++++..+......-.. ..+++||+
T Consensus 68 ~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~ 144 (202)
T d2p6ra3 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESR-D--EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (202)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCC-S--SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred cCcceeecccHHHHHHHHHHHHHHhhccccceeeccCcccc-c--ccccccceeeeccHHHHHHHhccchhhhhhhhccc
Confidence 35799999955 789999999999863 3444444433222 1 2224578999999988766543222 35899999
Q ss_pred cCCCCCCCCC
Q psy12466 268 DEKSLLKPPS 277 (680)
Q Consensus 268 DEaH~lKN~~ 277 (680)
||+|++.+..
T Consensus 145 DE~h~~~~~~ 154 (202)
T d2p6ra3 145 DEIHLLDSEK 154 (202)
T ss_dssp TTGGGGGCTT
T ss_pred cHHHHhcccc
Confidence 9999997664
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.48 E-value=1.4e-05 Score=77.77 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=52.8
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCe--eEEe----ecCCcchh--hhcccCCCCEEEEehhHHHHHHHhhhcCCCc
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRM--CPYH----VNQKNKAE--DYVYSRVSPVLIISYEMLIRAYQTIVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~--~~~~----~~~~~~~~--~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~ 263 (680)
+++|||+|+ .|..||.++|++|+....+ .... +....... ........+|+|+|++.+.+....+ ..|+
T Consensus 87 ~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~~~~--~~~~ 164 (237)
T d1gkub1 87 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYREL--GHFD 164 (237)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTS--CCCS
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhhhhc--CCCC
Confidence 589999995 5889999999999753322 2111 11111111 1222345789999999886544433 4689
Q ss_pred EEEEcCCCCCC
Q psy12466 264 LLICDEKSLLK 274 (680)
Q Consensus 264 ~vI~DEaH~lK 274 (680)
+||+||+|.+-
T Consensus 165 ~vVvDE~d~~l 175 (237)
T d1gkub1 165 FIFVDDVDAIL 175 (237)
T ss_dssp EEEESCHHHHH
T ss_pred EEEEEChhhhh
Confidence 99999999763
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=96.89 E-value=0.0064 Score=58.80 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=93.2
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~~ 449 (680)
.++-|.-|.--|. .|.|.-..+|=|||+++...+....-.|. ++-||..+.-+ .+|..
T Consensus 81 hyDVQLiGgi~L~-----------~G~iaem~TGEGKTL~a~l~a~l~al~g~-------~vhvvTvNdyLA~RDae~m~ 142 (273)
T d1tf5a3 81 PFKVQLMGGVALH-----------DGNIAEMKTGEGKTLTSTLPVYLNALTGK-------GVHVVTVNEYLASRDAEQMG 142 (273)
T ss_dssp CCHHHHHHHHHHH-----------TTSEEECCTTSCHHHHHHHHHHHHHTTSS-------CEEEEESSHHHHHHHHHHHH
T ss_pred EehhHHHHHHHHH-----------hhhheeecCCCcchhHHHHHHHHHHhcCC-------CceEEecCccccchhhhHHh
Confidence 3445666665542 46778899999999887655544444432 37778777544 78999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH---------hhhccCceEEEEcCccccc-----C
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ---------TIVDTEFDLLICDEGHRLK-----N 515 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~---------~l~~~~~~~vIlDEaH~~k-----n 515 (680)
.+-+|++- ++.+.............+ .++|+-.|-..+.-++- ......+.+.|+||+..+- .
T Consensus 143 ~iy~~lGl-svg~~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeart 219 (273)
T d1tf5a3 143 KIFEFLGL-TVGLNLNSMSKDEKREAY--AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEART 219 (273)
T ss_dssp HHHHHTTC-CEEECCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTC
T ss_pred HHHHHcCC-CccccccccCHHHHHHHh--hCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCC
Confidence 99999885 333333222222222222 46788877776654331 1234578999999998761 1
Q ss_pred c----------ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 516 G----------KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 516 ~----------~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
+ .+..++...++- +..-+||||-. ....|++.+.+
T Consensus 220 pliisg~~~~~a~it~q~~f~~y-~~l~gmtgta~-~~~~e~~~iy~ 264 (273)
T d1tf5a3 220 PLIISGQSMTLATITFQNYFRMY-EKLAGMTGTAK-TEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEEEEEEEEEEHHHHHTTS-SEEEEEESCCG-GGHHHHHHHHC
T ss_pred ceEeccCccchhhhhHHHHHHHH-HHHhCCccccH-HHHHHHHhccC
Confidence 1 222234443332 45678888863 45666766554
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0019 Score=66.20 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=83.2
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~ 452 (680)
+-+.|+.|+.-.+. ++-.+|.-.+|+|||.++..++..+....... ..++++++|+... .+-.+.+.
T Consensus 149 ~~~~Q~~A~~~al~---------~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~---~~~I~l~ApTgkAA~~L~e~~~ 216 (359)
T d1w36d1 149 EINWQKVAAAVALT---------RRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLAAPTGKAAARLTESLG 216 (359)
T ss_dssp SCCHHHHHHHHHHT---------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSC---CCCEEEEBSSHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHc---------CCeEEEEcCCCCCceehHHHHHHHHHHHHhcc---CCeEEEecCcHHHHHHHHHHHH
Confidence 44679999987653 35688999999999999888877766543211 2358999998544 33333322
Q ss_pred HHhCCCCeeEeecC-CcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccce
Q psy12466 453 KWLGLTRMCPYHVN-QKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531 (680)
Q Consensus 453 ~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~ 531 (680)
+............. ......... ...-.......+. ........+++||+|||-.+ ........+..+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~t~~---~ll~~~~~~~~~~--~~~~~~l~~d~lIIDEaSmv--~~~l~~~ll~~~~~~~ 289 (359)
T d1w36d1 217 KALRQLPLTDEQKKRIPEDASTLH---RLLGAQPGSQRLR--HHAGNPLHLDVLVVDEASMI--DLPMMSRLIDALPDHA 289 (359)
T ss_dssp HHHHHSSCCSCCCCSCSCCCBTTT---SCC-------------CTTSCCSCSEEEECSGGGC--BHHHHHHHHHTCCTTC
T ss_pred HHHhhcCchhhhhhhhhhhhhHHH---HHHhhhhcchHHH--Hhhhcccccceeeehhhhcc--CHHHHHHHHHHhcCCC
Confidence 21111000000000 000000000 0000001111111 11223357899999999987 2344566677778888
Q ss_pred EEEEeCCCCCCCHH
Q psy12466 532 RILLSGTPLQNDLQ 545 (680)
Q Consensus 532 rllLTgTP~~n~~~ 545 (680)
+++|.|=|-|-.+.
T Consensus 290 ~lILvGD~~QLppV 303 (359)
T d1w36d1 290 RVIFLGDRDQLASV 303 (359)
T ss_dssp EEEEEECTTSGGGT
T ss_pred EEEEECChhhccCC
Confidence 99999999876443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.85 E-value=0.0019 Score=55.65 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=42.8
Q ss_pred CeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH-HhhhcCCCcEEEEcCCC
Q psy12466 193 LRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY-QTIVDTEFDLLICDEKS 271 (680)
Q Consensus 193 ~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~-~~l~~~~~~~vI~DEaH 271 (680)
.++||+||...+.+|..|. +......+....... .......+..+++..+.... ....-.+|++||+||+|
T Consensus 37 ~~vli~~p~~~l~~q~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH 108 (140)
T d1yksa1 37 LRTLVLAPTRVVLSEMKEA---FHGLDVKFHTQAFSA-----HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAH 108 (140)
T ss_dssp CCEEEEESSHHHHHHHHHH---TTTSCEEEESSCCCC-----CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTT
T ss_pred ceeeeeecchhHHHHHHHH---hhhhhhhhccccccc-----ccccccchhhhhHHHHHHHHhccccccceeEEEEcccc
Confidence 5789999998776655443 322233322222111 11123446666666664433 33444679999999999
Q ss_pred CCC
Q psy12466 272 LLK 274 (680)
Q Consensus 272 ~lK 274 (680)
.+.
T Consensus 109 ~~~ 111 (140)
T d1yksa1 109 FLD 111 (140)
T ss_dssp CCS
T ss_pred ccC
Confidence 883
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00028 Score=66.37 Aligned_cols=86 Identities=16% Similarity=0.069 Sum_probs=56.0
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcch----hhhcccCCCCEEEEehhHHHHH--HHhhhcCCCcE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRA--YQTIVDTEFDL 264 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~----~~~~~~~~~~V~itsYe~l~~~--~~~l~~~~~~~ 264 (680)
.+++++|+|. .|..+|.++++.+.. ............. ..........|++++.+.+... ........+++
T Consensus 65 ~~~~~~v~P~~~L~~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~ 142 (206)
T d1oywa2 65 NGLTVVVSPLISLMKDQVDQLQANGV--AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVL 142 (206)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTC--CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEE
T ss_pred cCceEEeccchhhhhhHHHHHHhhcc--cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeee
Confidence 4688999997 667899999999863 2333322222111 1122345678888888776432 33344567899
Q ss_pred EEEcCCCCCCCCCCC
Q psy12466 265 LICDEKSLLKPPSGN 279 (680)
Q Consensus 265 vI~DEaH~lKN~~s~ 279 (680)
+|+||+|.+.+....
T Consensus 143 lviDEaH~~~~~~~~ 157 (206)
T d1oywa2 143 LAVDEAHCISQWGHD 157 (206)
T ss_dssp EEESSGGGGCTTSSC
T ss_pred eeeeeeeeeeccccc
Confidence 999999999876543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.038 Score=51.39 Aligned_cols=153 Identities=10% Similarity=0.034 Sum_probs=79.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.++|+|....+.+.+.+.. ..-.++-|+.-+.|+|||..+..++..+....+.+... .-.|+. ..++.
T Consensus 2 ~~yPw~~~~~~~l~~~~~~--~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~----~~~~~~------~~~i~ 69 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQA--GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS----CGHCRG------CQLMQ 69 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHT--TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC----CSCSHH------HHHHH
T ss_pred CCCcccHHHHHHHHHHHHc--CCcCeEEEEECCCCCcHHHHHHHHHHhccccccccccc----ccccch------hhhhh
Confidence 3679999888877765421 12234467899999999999999998887543321110 011111 11222
Q ss_pred HHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh----ccCceEEEEcCcccccCcc-cHHHHHHHhc
Q psy12466 453 KWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV----DTEFDLLICDEGHRLKNGK-SKLYELMTGL 527 (680)
Q Consensus 453 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~----~~~~~~vIlDEaH~~kn~~-s~~~~~l~~l 527 (680)
. .....+..+........ ...+.++...+.+. ..++.++|+||+|.+.... ....+.+..-
T Consensus 70 ~-~~~~~~~~~~~~~~~~~-------------i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep 135 (207)
T d1a5ta2 70 A-GTHPDYYTLAPEKGKNT-------------LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP 135 (207)
T ss_dssp H-TCCTTEEEECCCTTCSS-------------BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC
T ss_pred h-ccccccchhhhhhcccc-------------cccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhh
Confidence 1 11222222221111100 11222333333322 2367899999999984332 2233334443
Q ss_pred ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 528 NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 528 ~~~~rllLTgTP~~n~~~el~sll 551 (680)
....+++|+.+-..+=+.-+-|-+
T Consensus 136 ~~~~~fIl~t~~~~~ll~tI~SRc 159 (207)
T d1a5ta2 136 PAETWFFLATREPERLLATLRSRC 159 (207)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTS
T ss_pred cccceeeeeecChhhhhhhhccee
Confidence 566677777776554444444433
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.42 E-value=0.0039 Score=58.54 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=62.2
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEEc
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICD 268 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~D 268 (680)
++||+||..- ..++.+.++++... .++..++++..... ........+|+|+|=+.+..... .+.-....++|+|
T Consensus 74 ~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~-~~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViD 152 (208)
T d1hv8a1 74 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP-QIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILD 152 (208)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHH-HHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEE
T ss_pred ceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHH-HHHhcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEE
Confidence 6899999665 57888888888743 34455555432222 11122357899999766654433 2222446799999
Q ss_pred CCCCCCCCC--CCCCccccCCCCCCceecc
Q psy12466 269 EKSLLKPPS--GNSPGNDSGIPSLPRKSDS 296 (680)
Q Consensus 269 EaH~lKN~~--s~~~~a~~~l~~~~r~~LT 296 (680)
|||++-+.. ....+-+..++..+++++.
T Consensus 153 Ead~l~~~~~~~~i~~I~~~~~~~~Q~i~~ 182 (208)
T d1hv8a1 153 EADEMLNMGFIKDVEKILNACNKDKRILLF 182 (208)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEE
T ss_pred ChHHhhcCCChHHHHHHHHhCCCCCeEEEE
Confidence 999875432 2234444556566666654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=95.22 E-value=0.0089 Score=58.73 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=44.7
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh-hhcCCCcEEEEcCC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEK 270 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~-l~~~~~~~vI~DEa 270 (680)
.++||++|.-. ..+|.++|+.... ....... .........+++++++.+...... ..-.+++++|+||+
T Consensus 39 ~~~lvi~Ptr~La~q~~~~l~~~~~--~~~~~~~-------~~~~~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~ 109 (305)
T d2bmfa2 39 LRTLILAPTRVVAAEMEEALRGLPI--RYQTPAI-------RAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEA 109 (305)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTSCC--BCCC---------------CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEEST
T ss_pred CEEEEEccHHHHHHHHHHHHhcCCc--ceeeeEE-------eecccCccccccCCcHHHHHHHhcCccccceeEEEeeee
Confidence 46899999654 5788887765432 1111111 111223457999999988765432 12246899999999
Q ss_pred CCCC
Q psy12466 271 SLLK 274 (680)
Q Consensus 271 H~lK 274 (680)
|.+-
T Consensus 110 H~~~ 113 (305)
T d2bmfa2 110 HFTD 113 (305)
T ss_dssp TCCS
T ss_pred eecc
Confidence 9883
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.094 Score=49.56 Aligned_cols=163 Identities=15% Similarity=0.112 Sum_probs=83.2
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLG 456 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~ 456 (680)
.|.+.+.+|...+.. .......||.-+.|+|||..|.+++..+....... ..|..+..+.. ++..- .
T Consensus 16 g~~~~~~~L~~~i~~--~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~---------~~~~~~~~~~~-~i~~~-~ 82 (239)
T d1njfa_ 16 GQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCDNCR-EIEQG-R 82 (239)
T ss_dssp SCHHHHHHHHHHHHT--TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSC---------SSCCSCSHHHH-HHHHT-C
T ss_pred ChHHHHHHHHHHHHc--CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccc---------cCccccchHHH-HHHcC-C
Confidence 366777777654321 12234468889999999999998888776543211 11222222222 12210 1
Q ss_pred CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh----ccCceEEEEcCcccccCc-ccHHHHHHHhcccce
Q psy12466 457 LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV----DTEFDLLICDEGHRLKNG-KSKLYELMTGLNIRK 531 (680)
Q Consensus 457 ~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~----~~~~~~vIlDEaH~~kn~-~s~~~~~l~~l~~~~ 531 (680)
...+..+...... ..+.++...+.+. ..++.++|+||+|.+... ...+.+.+.......
T Consensus 83 ~~~~~~~~~~~~~----------------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~ 146 (239)
T d1njfa_ 83 FVDLIEIDAASRT----------------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 146 (239)
T ss_dssp CTTEEEEETTCSS----------------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTE
T ss_pred CCeEEEecchhcC----------------CHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCe
Confidence 1122222221111 1233333333322 235679999999998321 222334444445667
Q ss_pred EEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHh
Q psy12466 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNF 569 (680)
Q Consensus 532 rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f 569 (680)
+++++.+-...-+.-+.+.+..+.-..+ +..++..+.
T Consensus 147 ~~il~tn~~~~i~~~i~SRc~~i~~~~~-~~~~i~~~l 183 (239)
T d1njfa_ 147 KFLLATTDPQKLPVTILSRCLQFHLKAL-DVEQIRHQL 183 (239)
T ss_dssp EEEEEESCGGGSCHHHHTTSEEEECCCC-CHHHHHHHH
T ss_pred EEEEEcCCccccChhHhhhhcccccccC-cHHHhhhHH
Confidence 7888777665555556555554443333 334444433
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.068 Score=51.79 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=67.7
Q ss_pred HHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH------HHHHHHHHHH
Q psy12466 381 GVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT------SNWNDEFKKW 454 (680)
Q Consensus 381 gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll------~qW~~E~~~~ 454 (680)
-+..|.+.+ ......+.+|.-+.|.|||..+-.++..+....-...-...++..+-+.+++ .+|.+.+.
T Consensus 26 Ei~~l~~iL---~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~-- 100 (268)
T d1r6bx2 26 ELERAIQVL---CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFK-- 100 (268)
T ss_dssp HHHHHHHHH---TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHH--
T ss_pred HHHHHHHHH---hcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHH--
Confidence 355665543 2345678999999999999999998887776431111111233333333333 22332222
Q ss_pred hCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc------cHHHHHHHhc-
Q psy12466 455 LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK------SKLYELMTGL- 527 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~------s~~~~~l~~l- 527 (680)
...+.+....-.++++||.|.+-+.. ......++..
T Consensus 101 -------------------------------------~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L 143 (268)
T d1r6bx2 101 -------------------------------------ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 143 (268)
T ss_dssp -------------------------------------HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS
T ss_pred -------------------------------------HHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHH
Confidence 22334444455688899999984321 1234444433
Q ss_pred -ccceEEEEeCCC
Q psy12466 528 -NIRKRILLSGTP 539 (680)
Q Consensus 528 -~~~~rllLTgTP 539 (680)
+...+++.+.||
T Consensus 144 ~rg~i~vIgatT~ 156 (268)
T d1r6bx2 144 SSGKIRVIGSTTY 156 (268)
T ss_dssp SSCCCEEEEEECH
T ss_pred hCCCCeEEEeCCH
Confidence 566788888887
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.10 E-value=0.14 Score=46.98 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=37.0
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
|.+-+..+.++ ..+..-|+..+.|.|||-.|+.++..+......... +++|.|.
T Consensus 2 ~~~~l~~~i~~------~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D----~~~i~~~ 55 (198)
T d2gnoa2 2 QLETLKRIIEK------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASD----VLEIDPE 55 (198)
T ss_dssp HHHHHHHHHHT------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT----EEEECCS
T ss_pred HHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCC----EEEEeCC
Confidence 55666666553 356778999999999999999999876554321111 5666663
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.74 E-value=0.069 Score=51.60 Aligned_cols=79 Identities=10% Similarity=0.086 Sum_probs=54.1
Q ss_pred CeEEEEECcccH-HHHHHHHHHHhCCC--CeeEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPSSLT-SNWNDEFKKWLGLT--RMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~sl~-~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~v 265 (680)
..+++.||+.++ .|+.+.|.+|++.. .+..+++....+.+. ....+..+|+|-+...+..... =.+.++|
T Consensus 133 ~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~---f~~Lglv 209 (264)
T d1gm5a3 133 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVH---FKNLGLV 209 (264)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCC---CSCCCEE
T ss_pred cceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCC---cccccee
Confidence 468999997665 69999999999754 444555544333222 2244667899999988753222 1247899
Q ss_pred EEcCCCCCC
Q psy12466 266 ICDEKSLLK 274 (680)
Q Consensus 266 I~DEaH~lK 274 (680)
|+||=|+.-
T Consensus 210 iiDEqH~fg 218 (264)
T d1gm5a3 210 IIDEQHRFG 218 (264)
T ss_dssp EEESCCCC-
T ss_pred eeccccccc
Confidence 999999874
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=93.69 E-value=0.039 Score=52.55 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=56.7
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCe--eEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRM--CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
-++||+||+.- ..+..+++.++.....+ ....++..............+|+|+|-+.+...... +.-....++|+
T Consensus 99 ~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lVi 178 (238)
T d1wrba1 99 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 178 (238)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccceeee
Confidence 47999999765 67899999998755444 444443333333333345678999999999776542 22245778999
Q ss_pred cCCCCCCC
Q psy12466 268 DEKSLLKP 275 (680)
Q Consensus 268 DEaH~lKN 275 (680)
||||+|-.
T Consensus 179 DEaD~ll~ 186 (238)
T d1wrba1 179 DEADRMLD 186 (238)
T ss_dssp ETHHHHHH
T ss_pred ehhhhhhh
Confidence 99998754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.24 Score=45.33 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=60.8
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH------HHHHHHHHHHhCCCCeeEeecCCc
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT------SNWNDEFKKWLGLTRMCPYHVNQK 468 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll------~qW~~E~~~~~~~~~v~~~~~~~~ 468 (680)
....+.+|.-+.|.|||..+-.++..+....-...-..++++-+-+.+++ .+|.+.++..
T Consensus 41 ~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~i-------------- 106 (195)
T d1jbka_ 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV-------------- 106 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHH--------------
T ss_pred cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHH--------------
Confidence 45678999999999999999888887776431111111334444444554 4666655543
Q ss_pred chhhhhhhcCCCCEEEEeHHHHHHHHHhhhccC-ceEEEEcCcccccCcccH-----HHHHHHhc--ccceEEEEeCCC
Q psy12466 469 NKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTE-FDLLICDEGHRLKNGKSK-----LYELMTGL--NIRKRILLSGTP 539 (680)
Q Consensus 469 ~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~-~~~vIlDEaH~~kn~~s~-----~~~~l~~l--~~~~rllLTgTP 539 (680)
.+.+.... --++++||.|.+-+..+. ....++.. +...+++.+.||
T Consensus 107 -------------------------l~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~ 160 (195)
T d1jbka_ 107 -------------------------LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL 160 (195)
T ss_dssp -------------------------HHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECH
T ss_pred -------------------------HHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCH
Confidence 22222222 347899999998543221 22233322 456667777776
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.04 Score=51.95 Aligned_cols=103 Identities=8% Similarity=-0.035 Sum_probs=60.4
Q ss_pred CeEEEEECcccHHH-HHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPSSLTSN-WNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~sl~~n-W~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
-++||+||+.-+.. =.++++++.... ++..++++..............+|+|.|-+.+...... +.-....++|+
T Consensus 86 ~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVl 165 (222)
T d2j0sa1 86 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 165 (222)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeee
Confidence 36899999887654 445666665433 44444444432222222234568999999988765432 22244668999
Q ss_pred cCCCCCCCCCCC--CCccccCCCCCCceec
Q psy12466 268 DEKSLLKPPSGN--SPGNDSGIPSLPRKSD 295 (680)
Q Consensus 268 DEaH~lKN~~s~--~~~a~~~l~~~~r~~L 295 (680)
||||+|-+..-. ....+..++..+..+|
T Consensus 166 DEaD~ll~~~f~~~i~~I~~~l~~~~Q~il 195 (222)
T d2j0sa1 166 DEADEMLNKGFKEQIYDVYRYLPPATQVVL 195 (222)
T ss_dssp ETHHHHTSTTTHHHHHHHHTTSCTTCEEEE
T ss_pred cchhHhhhcCcHHHHHHHHHhCCCCCEEEE
Confidence 999999874322 2333344444454444
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.15 E-value=0.32 Score=45.08 Aligned_cols=136 Identities=16% Similarity=0.224 Sum_probs=81.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
.+|.-..|.|||.++.-++..+...+. ++.+|+-..--..=.++++.|...+.+.++.........
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~~g~-------kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~------- 77 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQQGK-------SVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA------- 77 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTC-------CEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHH-------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-------cEEEEecccccccchhhhhhhhhhcCCcccccccCCCHH-------
Confidence 456899999999999989887765542 356665543333345666666555555554433322221
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----------ccceEEEEeCCCCCCCHHHHH
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----------NIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----------~~~~rllLTgTP~~n~~~el~ 548 (680)
+.+.+.........+|+|++|=|=+..+.. .....+..+ .....+.|+||-=++...+..
T Consensus 78 --------~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~-~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~ 148 (211)
T d2qy9a2 78 --------SVIFDAIQAAKARNIDVLIADTAGRLQNKS-HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAK 148 (211)
T ss_dssp --------HHHHHHHHHHHHTTCSEEEECCCCCGGGHH-HHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHH
T ss_pred --------HHHHHHHHHHHHcCCCEEEeccCCCccccH-HHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHh
Confidence 112222333334578999999987653322 222222222 234568899998888888887
Q ss_pred HHHhhhCCCC
Q psy12466 549 YLNDFANPGV 558 (680)
Q Consensus 549 sll~fl~p~~ 558 (680)
..+..+.+..
T Consensus 149 ~~~~~~~~~~ 158 (211)
T d2qy9a2 149 LFHEAVGLTG 158 (211)
T ss_dssp HHHHHSCCCE
T ss_pred hhhhccCCce
Confidence 7777666553
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.046 Score=50.75 Aligned_cols=103 Identities=7% Similarity=0.008 Sum_probs=59.2
Q ss_pred CeEEEEECcccH-HHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 193 LRVLIVTPSSLT-SNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~sl~-~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
-++||+||+.-+ .+=.+++.++.. ........++..............+|+|+|=+.+...... +.-....++|
T Consensus 72 ~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lV 151 (206)
T d1veca_ 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIV 151 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred cceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEE
Confidence 368999998664 456666666653 2233333333322222222345678999998888665442 2224567899
Q ss_pred EcCCCCCCCCC--CCCCccccCCCCCCceec
Q psy12466 267 CDEKSLLKPPS--GNSPGNDSGIPSLPRKSD 295 (680)
Q Consensus 267 ~DEaH~lKN~~--s~~~~a~~~l~~~~r~~L 295 (680)
+||||+|-+.. ......+..+...+.+++
T Consensus 152 lDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l 182 (206)
T d1veca_ 152 LDEADKLLSQDFVQIMEDIILTLPKNRQILL 182 (206)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHSCTTCEEEE
T ss_pred EeccccccccchHHHHHHHHHhCCCCCEEEE
Confidence 99999987642 122333344444444444
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.06 E-value=0.3 Score=45.15 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=84.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc----chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS----SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~----sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
+-.+|.-..|.|||.++.-++..+...+. ++.+|+-- .-+.|.+ .|...+.+.++..........
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~-------kV~lit~Dt~R~gA~eQL~----~~a~~l~i~~~~~~~~~d~~~ 75 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGK-------KVMFCAGDTFRAAGGTQLS----EWGKRLSIPVIQGPEGTDPAA 75 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTC-------CEEEECCCCSSTTHHHHHH----HHHHHHTCCEECCCTTCCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC-------cEEEEEeccccccchhhHh----hcccccCceEEeccCCccHHH
Confidence 33566899999999999989887765542 35555553 2334433 332222333333222221111
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----------ccceEEEEeCCCCCC
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----------NIRKRILLSGTPLQN 542 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----------~~~~rllLTgTP~~n 542 (680)
.+.+.........+++|++|=|=+..+.... .+.+..+ .....++|+||-=++
T Consensus 76 ---------------~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l-~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~ 139 (207)
T d1okkd2 76 ---------------LAYDAVQAMKARGYDLLFVDTAGRLHTKHNL-MEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN 139 (207)
T ss_dssp ---------------HHHHHHHHHHHHTCSEEEECCCCCCTTCHHH-HHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH
T ss_pred ---------------HHHHHHHHHHHCCCCEEEcCccccchhhHHH-HHHHHHHHHHhhhcccCCCceEEEEeecccCch
Confidence 1111122223346899999998876443321 1122111 245679999999999
Q ss_pred CHHHHHHHHhhhCCCC-----------CCCHHHHHHHhhhhhh
Q psy12466 543 DLQEFFYLNDFANPGV-----------LGSLREFRKNFEEPIL 574 (680)
Q Consensus 543 ~~~el~sll~fl~p~~-----------l~~~~~F~~~f~~~i~ 574 (680)
...+....+..+.++. +|..-.+...+..|+.
T Consensus 140 ~~~~~~~~~~~~~~~~lI~TKlDet~~~G~~l~~~~~~~~Pi~ 182 (207)
T d1okkd2 140 GLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIK 182 (207)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEE
T ss_pred HHHHHHHhhhccCCceEEEeccCCCCCccHHHHHHHHHCCCEE
Confidence 8888888877776553 3444445555555543
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.052 Score=50.94 Aligned_cols=104 Identities=6% Similarity=-0.014 Sum_probs=60.7
Q ss_pred CCeEEEEECcccH-HHHHHHHHHHhCCCCe--eEEeecCCcch-hhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTPSSLT-SNWNDEFKKWLGLTRM--CPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~sl~-~nW~~E~~k~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
..++||+||+.-+ .+=.+++.++...... ....++..... .........+|+|+|=+.+...... +.-....++
T Consensus 80 ~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~l 159 (218)
T d2g9na1 80 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 159 (218)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEE
Confidence 4468999997664 5777788888743333 33333222222 2223334578999998877765542 223457899
Q ss_pred EEcCCCCCCCCC--CCCCccccCCCCCCceec
Q psy12466 266 ICDEKSLLKPPS--GNSPGNDSGIPSLPRKSD 295 (680)
Q Consensus 266 I~DEaH~lKN~~--s~~~~a~~~l~~~~r~~L 295 (680)
|+||||++-+.. ......+..++..+.+++
T Consensus 160 VlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il 191 (218)
T d2g9na1 160 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 191 (218)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEE
T ss_pred EeeecchhhcCchHHHHHHHHHhCCCCCeEEE
Confidence 999999987642 112233344444444444
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.18 Score=46.71 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=35.2
Q ss_pred cCceEEEEcCcccccCcccHH-HHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 500 TEFDLLICDEGHRLKNGKSKL-YELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 500 ~~~~~vIlDEaH~~kn~~s~~-~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
..+.++|+||+|.+....... ...+.......+++++.+....-+.-+.+.+..+.
T Consensus 100 ~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~ 156 (224)
T d1sxjb2 100 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 156 (224)
T ss_dssp TCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhh
Confidence 357899999999985443222 23344446666777777777665555666554443
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.11 E-value=0.17 Score=48.14 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=30.8
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWN 448 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~ 448 (680)
....|.+|.-.+|+|||..+=+++..+. .+++.|-+..++..|.
T Consensus 40 ~~~~giLl~GppGtGKT~la~aia~~~~----------~~~~~i~~~~l~~~~~ 83 (247)
T d1ixza_ 40 RIPKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDFVEMFV 83 (247)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHHHHHSCT
T ss_pred CCCceEEEecCCCCChhHHHHHHHHHcC----------CCEEEEEhHHhhhccc
Confidence 3456889999999999999988886431 1366666655555443
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.11 Score=48.24 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=48.8
Q ss_pred CeEEEEECcccH-HHHHHHHHHHhCCCCeeEEeecCCcc-hhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEEc
Q psy12466 193 LRVLIVTPSSLT-SNWNDEFKKWLGLTRMCPYHVNQKNK-AEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~sl~-~nW~~E~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~D 268 (680)
-++||+||+.-+ .+=..++...............+... ..+.......+|+|+|-+.+...... +.-....++|+|
T Consensus 79 ~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlD 158 (212)
T d1qdea_ 79 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 158 (212)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred cceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCceecCcceEEeeh
Confidence 368999998764 45555555554333333333332221 22222234578999999888776542 222447889999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|||++-+.
T Consensus 159 Ead~lld~ 166 (212)
T d1qdea_ 159 EADEMLSS 166 (212)
T ss_dssp THHHHHHT
T ss_pred hhhhhccc
Confidence 99999764
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.088 Score=48.80 Aligned_cols=83 Identities=8% Similarity=0.152 Sum_probs=53.0
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCC---CCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGL---TRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
-++||+||+-- ..+..+.++++... .+....+++...... ........+|+|+|-+.+...... +.-..-.++
T Consensus 70 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~l 149 (207)
T d1t6na_ 70 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 149 (207)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred ceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceecccccee
Confidence 36899999654 56777777777632 334444444332222 222345678999999998776652 222346689
Q ss_pred EEcCCCCCCC
Q psy12466 266 ICDEKSLLKP 275 (680)
Q Consensus 266 I~DEaH~lKN 275 (680)
|+||||+|-+
T Consensus 150 VlDEaD~ll~ 159 (207)
T d1t6na_ 150 ILDECDKMLE 159 (207)
T ss_dssp EEESHHHHHS
T ss_pred ehhhhhhhhh
Confidence 9999998764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.67 E-value=0.44 Score=43.90 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=39.5
Q ss_pred cCceEEEEcCcccccCcc-cHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhh
Q psy12466 500 TEFDLLICDEGHRLKNGK-SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFE 570 (680)
Q Consensus 500 ~~~~~vIlDEaH~~kn~~-s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~ 570 (680)
..+.++|+||+|.+.... ....+.+.......+++++.+....-+..+.+.+..+.-..+ +..++.....
T Consensus 98 ~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~-~~~~i~~~l~ 168 (227)
T d1sxjc2 98 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPL-PQEAIERRIA 168 (227)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC-CHHHHHHHHH
T ss_pred CCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhhccccc-cccccccccc
Confidence 356799999999874332 233334444455667777776666655556655544443332 3344444443
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.52 E-value=0.48 Score=43.85 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=77.0
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
-.+|.-.+|.|||.++.-+++.+...+. +..||-+...=+ .=.++++.|...+.+.++..........
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~~~~~~~------kV~lit~Dt~R~-gA~eQL~~~a~~l~i~~~~~~~~~d~~~----- 80 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKMFVDEGK------SVVLAAADTFRA-AAIEQLKIWGERVGATVISHSEGADPAA----- 80 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC------CEEEEEECTTCH-HHHHHHHHHHHHHTCEEECCSTTCCHHH-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC------ceEEEeeccccc-chhHHHHHHhhhcCccccccCCCCcHHH-----
Confidence 3567889999999999889888866542 224444444333 2234455554444455544333222111
Q ss_pred CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----------ccceEEEEeCCCCCCCHHHH
Q psy12466 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----------NIRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----------~~~~rllLTgTP~~n~~~el 547 (680)
.+...........+|+|++|=|=+..+.. .....+..+ .....++|+||-=++.+.+.
T Consensus 81 ----------~~~~~~~~~~~~~~d~ilIDTaGr~~~d~-~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~ 149 (213)
T d1vmaa2 81 ----------VAFDAVAHALARNKDVVIIDTAGRLHTKK-NLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA 149 (213)
T ss_dssp ----------HHHHHHHHHHHTTCSEEEEEECCCCSCHH-HHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCEEEEeccccccchH-HHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhh
Confidence 01111122223468999999887654332 222223222 12356899998877778887
Q ss_pred HHHHhhhCCC
Q psy12466 548 FYLNDFANPG 557 (680)
Q Consensus 548 ~sll~fl~p~ 557 (680)
...+..+.+.
T Consensus 150 ~~~~~~~~~~ 159 (213)
T d1vmaa2 150 KIFKEAVNVT 159 (213)
T ss_dssp HHHHHHSCCC
T ss_pred hhhccccCCc
Confidence 7777777655
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.83 E-value=0.18 Score=48.73 Aligned_cols=69 Identities=26% Similarity=0.307 Sum_probs=47.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+|.|-|+++|.+- .+..++.-..|+|||.+++.-+..+...... . .+++||++++ +++..-.+.+
T Consensus 1 ~L~~eQ~~av~~~-----------~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~-~--~~~ILvlt~tn~a~~~i~~~~ 66 (306)
T d1uaaa1 1 RLNPGQQQAVEFV-----------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-Q--ARHIAAVTFTNKAAREMKERV 66 (306)
T ss_dssp CCCHHHHHHHHCC-----------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-C--GGGEEEEESSHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCC-----------CCCEEEEeeCCccHHHHHHHHHHHHHHhcCC-C--hhHEEEEeCcHHHHHHHHHHH
Confidence 4778899999541 2447788899999999988877666554321 1 2469999997 4555555555
Q ss_pred HHHh
Q psy12466 452 KKWL 455 (680)
Q Consensus 452 ~~~~ 455 (680)
.+..
T Consensus 67 ~~~~ 70 (306)
T d1uaaa1 67 GQTL 70 (306)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 5544
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=90.48 E-value=0.22 Score=46.90 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=51.6
Q ss_pred CCeEEEEECcccH-HHHHHHHHHHhCCCCeeEE--eecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCcE
Q psy12466 192 ILRVLIVTPSSLT-SNWNDEFKKWLGLTRMCPY--HVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDL 264 (680)
Q Consensus 192 ~~~~LIV~P~sl~-~nW~~E~~k~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~ 264 (680)
-+.+++++|...+ .|+.+.|+++++...+.+. ++........ ....+..+|+|=+-..+. ..+.=.+.++
T Consensus 104 g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~---~~~~f~~LgL 180 (233)
T d2eyqa3 104 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ---SDVKFKDLGL 180 (233)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH---SCCCCSSEEE
T ss_pred CCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhc---cCCccccccc
Confidence 3588999997665 6999999999876655544 4433322221 224456678887766553 1122234779
Q ss_pred EEEcCCCCC
Q psy12466 265 LICDEKSLL 273 (680)
Q Consensus 265 vI~DEaH~l 273 (680)
||+||=|+-
T Consensus 181 iIiDEeH~f 189 (233)
T d2eyqa3 181 LIVDEEHRF 189 (233)
T ss_dssp EEEESGGGS
T ss_pred eeeechhhh
Confidence 999999973
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.43 E-value=0.91 Score=41.66 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=70.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
-+|.-..|.|||.++.-++..+...+. ++++|+--.--..=.++++.|...+.+.++..........
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~~~g~-------kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~------ 79 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYKGKGR-------RPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPES------ 79 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTC-------CEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHH------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-------cEEEEecccccchHHHHHHHHHHhcCCccccccccchhhH------
Confidence 355899999999999989888876642 3666666543333345555554433333333322221111
Q ss_pred CCEEEEeHHHHHHH-HHhhhccCceEEEEcCcccccCcccHHHHHHHhc----cc-ceEEEEeCCCCCCCHHHHHHHHhh
Q psy12466 480 SPVLIISYEMLIRA-YQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL----NI-RKRILLSGTPLQNDLQEFFYLNDF 553 (680)
Q Consensus 480 ~~vvI~ty~~l~~~-~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l----~~-~~rllLTgTP~~n~~~el~sll~f 553 (680)
+... ........+|+|++|=|=+..+..... ..+..+ .. ..-+++++|--++.+.........
T Consensus 80 ----------~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~-~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~ 148 (207)
T d1ls1a2 80 ----------IRRRVEEKARLEARDLILVDTAGRLQIDEPLM-GELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEK 148 (207)
T ss_dssp ----------HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH-HHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhhccCcceeecccccchhhhhhH-HHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhh
Confidence 1111 112223457889999887664433222 222222 22 334666666555555555444444
Q ss_pred hCC
Q psy12466 554 ANP 556 (680)
Q Consensus 554 l~p 556 (680)
+..
T Consensus 149 ~~~ 151 (207)
T d1ls1a2 149 VGV 151 (207)
T ss_dssp TCC
T ss_pred CCC
Confidence 443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.41 E-value=1.5 Score=40.15 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=33.2
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
+..+.++.++.+. ...........+|.-+.|+|||.-+-|++..+...+.
T Consensus 16 ~~N~~a~~~~~~~-~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~ 65 (213)
T d1l8qa2 16 EGNRLAYEVVKEA-LENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGY 65 (213)
T ss_dssp TTTHHHHHHHHHH-HHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHH-HhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCcc
Confidence 3456666555442 2111222344789999999999999999988877653
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.40 E-value=0.78 Score=42.30 Aligned_cols=136 Identities=14% Similarity=0.168 Sum_probs=70.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
.+|.-.+|.|||.++.-+++.+...+. +..||-|...-+.- .++++.|...+.+.++.........
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~~~g~------kV~lit~Dt~R~ga-~eQL~~~a~~l~v~~~~~~~~~~~~------- 80 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYKKKGF------KVGLVGADVYRPAA-LEQLQQLGQQIGVPVYGEPGEKDVV------- 80 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHHHTTC------CEEEEECCCSSHHH-HHHHHHHHHHHTCCEECCTTCCCHH-------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC------ceEEEEeeccccch-hHHHHHhccccCcceeecccchhhh-------
Confidence 455789999999999889888776542 23455555444322 3455555443344444333222211
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc-cHHHHHHHhc----c-cceEEEEeCCCCCCCHHHHHHHHhh
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK-SKLYELMTGL----N-IRKRILLSGTPLQNDLQEFFYLNDF 553 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~-s~~~~~l~~l----~-~~~rllLTgTP~~n~~~el~sll~f 553 (680)
+.+.+.........+++|++|=+=+..+.. ......+..+ + ...-++|++|--++...+....+.+
T Consensus 81 --------~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~ 152 (211)
T d1j8yf2 81 --------GIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA 152 (211)
T ss_dssp --------HHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc
Confidence 111222233334568899999876532221 2222223322 2 2345778888777777777776666
Q ss_pred hCCC
Q psy12466 554 ANPG 557 (680)
Q Consensus 554 l~p~ 557 (680)
+.++
T Consensus 153 ~~~~ 156 (211)
T d1j8yf2 153 SKIG 156 (211)
T ss_dssp CTTE
T ss_pred cCcc
Confidence 6554
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.07 E-value=0.67 Score=46.91 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=56.3
Q ss_pred HHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH------HHHHHHHHHHh
Q psy12466 382 VSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT------SNWNDEFKKWL 455 (680)
Q Consensus 382 v~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll------~qW~~E~~~~~ 455 (680)
++.+.+.++ .....+.||.-+.|.|||..+=.++..+....--..-...+++-+-+..++ .+|.+.+..
T Consensus 31 i~~~~~~L~---r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~-- 105 (387)
T d1qvra2 31 IRRVIQILL---RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA-- 105 (387)
T ss_dssp HHHHHHHHH---CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHH--
T ss_pred HHHHHHHHh---cCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHH--
Confidence 444444332 345667899999999999998888877765431111112334444444444 244443332
Q ss_pred CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccC-ceEEEEcCcccccCccc-----HHHHHHHhc--
Q psy12466 456 GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTE-FDLLICDEGHRLKNGKS-----KLYELMTGL-- 527 (680)
Q Consensus 456 ~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~-~~~vIlDEaH~~kn~~s-----~~~~~l~~l-- 527 (680)
.+..+.... --++++||.|.+-..++ .....++..
T Consensus 106 -------------------------------------i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~ 148 (387)
T d1qvra2 106 -------------------------------------VIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA 148 (387)
T ss_dssp -------------------------------------HHHHHHTTCSSEEEEECCC-------------------HHHHH
T ss_pred -------------------------------------HHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh
Confidence 122333332 45689999999854321 122233322
Q ss_pred ccceEEEEeCCC
Q psy12466 528 NIRKRILLSGTP 539 (680)
Q Consensus 528 ~~~~rllLTgTP 539 (680)
+...+++.+-||
T Consensus 149 rg~~~~I~~tT~ 160 (387)
T d1qvra2 149 RGELRLIGATTL 160 (387)
T ss_dssp TTCCCEEEEECH
T ss_pred CCCcceeeecCH
Confidence 566778888776
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.40 E-value=0.68 Score=43.67 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
+.+|.+|.-++|+|||..|-+++..+
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhhcc
Confidence 45678999999999999988877543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.36 E-value=0.28 Score=46.84 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=47.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
...+|.+|.-.+|+|||..+=+++.... .+++.+.+..+...|..+-..
T Consensus 36 ~~~~giLL~GppGtGKT~l~~ala~~~~----------~~~~~i~~~~l~~~~~g~~~~--------------------- 84 (258)
T d1e32a2 36 KPPRGILLYGPPGTGKTLIARAVANETG----------AFFFLINGPEIMSKLAGESES--------------------- 84 (258)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHTT----------CEEEEECHHHHTTSCTTHHHH---------------------
T ss_pred CCCceeEEecCCCCCchHHHHHHHHHhC----------CeEEEEEchhhcccccccHHH---------------------
Confidence 3467888899999999998766665421 246666665555544322211
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
.++..........+.++++||++.+..
T Consensus 85 --------------~l~~~f~~A~~~~p~il~iDeid~l~~ 111 (258)
T d1e32a2 85 --------------NLRKAFEEAEKNAPAIIFIDELDAIAP 111 (258)
T ss_dssp --------------HHHHHHHHHHHTCSEEEEESSGGGTCC
T ss_pred --------------HHHHHHHHHHhcCCeEEEehhhhhhcc
Confidence 122222333345688999999999843
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=89.33 E-value=0.38 Score=49.27 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL 455 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~ 455 (680)
-|=+|++-+.+.+. .+.+..+|.--.|+|||+.+.+++.... +|+|||||+ ....+|.+++..|+
T Consensus 15 DQP~aI~~l~~~l~----~g~~~q~l~GltGS~ka~~iA~l~~~~~----------rp~LVVt~n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 15 DQPQAIAKLVDGLR----RGVKHQTLLGATGTGKTFTISNVIAQVN----------KPTLVIAHNKTLAGQLYSELKEFF 80 (413)
T ss_dssp THHHHHHHHHHHHH----HTCSEEEEEECTTSCHHHHHHHHHHHHT----------CCEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh----cCCCcEEEeCCCCcHHHHHHHHHHHHhC----------CCEEEEeCCHHHHHHHHHHHHHHc
Confidence 57778887776532 2335567777899999998887776531 359999998 56699999999999
Q ss_pred CCCCeeEe
Q psy12466 456 GLTRMCPY 463 (680)
Q Consensus 456 ~~~~v~~~ 463 (680)
|...+..+
T Consensus 81 ~~~~v~~f 88 (413)
T d1t5la1 81 PHNAVEYF 88 (413)
T ss_dssp TTSEEEEE
T ss_pred CCCceeec
Confidence 88766554
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.64 E-value=0.95 Score=38.42 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=27.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
++.-.|..|||..-|..+..+...+. +++++-|.
T Consensus 6 li~GpMfsGKTt~Li~~~~~~~~~g~-------~v~~ikp~ 39 (133)
T d1xbta1 6 VILGPMFSGKSTELMRRVRRFQIAQY-------KCLVIKYA 39 (133)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTTC-------CEEEEEET
T ss_pred EEEecccCHHHHHHHHHHHHHHHcCC-------cEEEEecc
Confidence 56678999999999998888776653 48888886
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=87.89 E-value=0.47 Score=46.07 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=47.2
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWN 448 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~ 448 (680)
+...|-+-|+++|++ ..+..++.-..|+|||.+++.-+..+...+.. . ..++|+++++. ....-.
T Consensus 8 ~~~~L~~eQ~~~v~~-----------~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~-~--p~~il~lt~t~~aa~~~~ 73 (318)
T d1pjra1 8 LLAHLNKEQQEAVRT-----------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-A--PWNILAITFTNKAAREMR 73 (318)
T ss_dssp HHTTSCHHHHHHHHC-----------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-C--GGGEEEEESSHHHHHHHH
T ss_pred HHHhCCHHHHHHHhC-----------CCCCEEEEecCCccHHHHHHHHHHHHHHcCCC-C--HHHeEeEeccHHHHHHHH
Confidence 344588899999953 22457888889999999998877776655421 1 24699999974 334444
Q ss_pred HHHHH
Q psy12466 449 DEFKK 453 (680)
Q Consensus 449 ~E~~~ 453 (680)
..+..
T Consensus 74 ~~~~~ 78 (318)
T d1pjra1 74 ERVQS 78 (318)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=87.88 E-value=1.7 Score=37.00 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=58.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCC
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 480 (680)
++.-.|..|||..-|-.+..+...+. +++++-|..=-. + . ..+....+ ....
T Consensus 6 ~i~GpMfsGKTteLi~~~~~~~~~~~-------kv~~ikp~~D~R--------~-~-~~i~s~~g-----------~~~~ 57 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLHRLEYADV-------KYLVFKPKIDTR--------S-I-RNIQSRTG-----------TSLP 57 (139)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTC-------CEEEEEECCCGG--------G-C-SSCCCCCC-----------CSSC
T ss_pred EEEccccCHHHHHHHHHHHHHHHCCC-------cEEEEEEccccc--------c-c-ceEEcccC-----------ceee
Confidence 45678999999999999888877653 588888862211 0 0 01110010 1112
Q ss_pred CEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHHHHHHhc-ccceEEEEeCC
Q psy12466 481 PVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGT 538 (680)
Q Consensus 481 ~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~~~rllLTgT 538 (680)
.+.+.+...+...... ......++|.+||||-+.. .....+..+ .....+.++|-
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~dvI~IDE~QFf~d---~i~~~~~~~~~~g~~Viv~GL 114 (139)
T d2b8ta1 58 SVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDD---RICEVANILAENGFVVIISGL 114 (139)
T ss_dssp CEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCT---HHHHHHHHHHHTTCEEEEECC
T ss_pred eEEeccchhhHHHHHhhccccCcCEEEechhhhcch---hHHHHHHHHHhcCceEEEEEe
Confidence 2444443333332221 1123689999999999842 333333333 33445666653
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.53 E-value=0.52 Score=43.93 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=23.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+.+|.-..|+|||..+-+++..+..
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~~l~~ 59 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLESIFG 59 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhcC
Confidence 3456899999999999999999987644
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.46 E-value=1.1 Score=38.39 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
-++.-.|..|||...|..+..+...+. ++|++-|.
T Consensus 10 ~lI~GpMfSGKTteLi~~~~~~~~~g~-------~vl~i~~~ 44 (141)
T d1xx6a1 10 EVIVGPMYSGKSEELIRRIRRAKIAKQ-------KIQVFKPE 44 (141)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEEEEC
T ss_pred EEEEeccccHHHHHHHHHHHHhhhcCC-------cEEEEEec
Confidence 356789999999999999988877663 48999886
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.34 E-value=1.6 Score=39.91 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=35.4
Q ss_pred hccCceEEEEcCcccccCcccH-HHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 498 VDTEFDLLICDEGHRLKNGKSK-LYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 498 ~~~~~~~vIlDEaH~~kn~~s~-~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
....+.++|+||+|.+...... ..+.+.......+++++-+....-+..+.+.+..+.
T Consensus 105 ~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~ 163 (237)
T d1sxjd2 105 PCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 163 (237)
T ss_dssp CCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred cccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhhhhc
Confidence 3446779999999998543322 223333335556677776666666666766544443
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=85.52 E-value=0.4 Score=45.77 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=46.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
..+|.+|.-.+|+|||..+=+++..+.. +++.|-+..++..| .+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~~----------~~~~i~~~~l~~~~-------~g------------------- 87 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV----------PFFTISGSDFVEMF-------VG------------------- 87 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC----------CEEEECSCSSTTSC-------CC-------------------
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcCC----------CEEEEEhHHhhhcc-------hh-------------------
Confidence 4577899999999999998887765421 25555555554332 11
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
.+-..+....+......+.+|++||++.+
T Consensus 88 ---------~~~~~l~~~f~~A~~~~P~il~iDeiD~l 116 (256)
T d1lv7a_ 88 ---------VGASRVRDMFEQAKKAAPCIIFIDEIDAV 116 (256)
T ss_dssp ---------CCHHHHHHHHHHHHTTCSEEEEETTHHHH
T ss_pred ---------HHHHHHHHHHHHHHHcCCEEEEEEChhhh
Confidence 01122333344444567789999999986
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.37 E-value=0.83 Score=41.59 Aligned_cols=105 Identities=10% Similarity=-0.024 Sum_probs=60.1
Q ss_pred CCeEEEEECcccHH-HHHHHHHHHh--CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPSSLTS-NWNDEFKKWL--GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~sl~~-nW~~E~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
-.+.++++|..... +=...+.... ...++...+|..........-....+|+|+|-+.+...... +.-....++|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV 148 (206)
T d1s2ma1 69 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 148 (206)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred cccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEE
Confidence 34678888866543 2222333333 22455555555433333333345678999999998776653 2223466899
Q ss_pred EcCCCCCCCC--CCCCCccccCCCCCCceecc
Q psy12466 267 CDEKSLLKPP--SGNSPGNDSGIPSLPRKSDS 296 (680)
Q Consensus 267 ~DEaH~lKN~--~s~~~~a~~~l~~~~r~~LT 296 (680)
+||||+|-+. ......-+..++..+.+++.
T Consensus 149 ~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~ 180 (206)
T d1s2ma1 149 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLF 180 (206)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEE
T ss_pred eechhhhhhhhhHHHHHHHHHhCCCCCEEEEE
Confidence 9999999764 23344444555555555543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.02 E-value=1.6 Score=40.01 Aligned_cols=43 Identities=28% Similarity=0.267 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|...+..+.+.+. ......-||.-..|+|||..+-+++..+..
T Consensus 29 ~~~~~~~l~~~i~---~~~~~~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 29 QEHIVKRLKHYVK---TGSMPHLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp CHHHHHHHHHHHH---HTCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4555555544322 234456899999999999999988877653
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.95 E-value=0.39 Score=47.37 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=28.1
Q ss_pred CceEE-EcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 398 EGAIL-ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 398 ~g~iL-aDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
.|.+| .-++|+|||..|=+++..+...-+ ++.|-...++..|
T Consensus 123 ~g~~l~~G~pG~GKT~la~ala~~~~~~~~--------~~~~~~~~~~~~~ 165 (321)
T d1w44a_ 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDK--------YATVRFGEPLSGY 165 (321)
T ss_dssp SEEEEEECSSSSCHHHHHHHHHHHHHTTSC--------CEEEEBSCSSTTC
T ss_pred CceEEEECCCCccHHHHHHHHHHHhcCCCC--------eEEEEhhHhhhcc
Confidence 45555 699999999999998877654322 3445555555433
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=81.15 E-value=1.8 Score=43.86 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=53.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL 455 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~ 455 (680)
-|-++++-+.+.+. .+.+...|.--.|.||++.+.+++.... +|+|||||+ ....+|.+++..|+
T Consensus 12 dqp~aI~~l~~~L~----~g~~~~~L~GlsgS~ka~~~A~l~~~~~----------rp~LvVt~~~~~A~~l~~dL~~~l 77 (408)
T d1c4oa1 12 DQPKAIAGLVEALR----DGERFVTLLGATGTGKTVTMAKVIEALG----------RPALVLAPNKILAAQLAAEFRELF 77 (408)
T ss_dssp THHHHHHHHHHHHH----TTCSEEEEEECTTSCHHHHHHHHHHHHT----------CCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh----cCCCcEEEecCCCCHHHHHHHHHHHHhC----------CCEEEEeCCHHHHHHHHHHHHHhc
Confidence 47677877776532 2334457777899999998887775442 258999998 55699999999999
Q ss_pred CCCCeeEe
Q psy12466 456 GLTRMCPY 463 (680)
Q Consensus 456 ~~~~v~~~ 463 (680)
++..+..+
T Consensus 78 ~~~~v~~f 85 (408)
T d1c4oa1 78 PENAVEYF 85 (408)
T ss_dssp TTSEEEEC
T ss_pred CccceeeC
Confidence 88666554
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.02 E-value=1 Score=40.78 Aligned_cols=103 Identities=9% Similarity=-0.012 Sum_probs=55.5
Q ss_pred CeEEEEECccc----HHHHHHHHHHHhCC---CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCc
Q psy12466 193 LRVLIVTPSSL----TSNWNDEFKKWLGL---TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~sl----~~nW~~E~~k~~~~---~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~ 263 (680)
...++++|... ..++.....+++.. .......+...............+|+|+|-+.+...... ..-....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~ 149 (209)
T d1q0ua_ 70 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAH 149 (209)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCC
T ss_pred ccccccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccce
Confidence 35678877544 34455555555421 112222222211111222334578999999998775542 2224577
Q ss_pred EEEEcCCCCCCCCC--CCCCccccCCCCCCceec
Q psy12466 264 LLICDEKSLLKPPS--GNSPGNDSGIPSLPRKSD 295 (680)
Q Consensus 264 ~vI~DEaH~lKN~~--s~~~~a~~~l~~~~r~~L 295 (680)
++|+||||++-+.. ......+..++...++++
T Consensus 150 ~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il 183 (209)
T d1q0ua_ 150 ILVVDEADLMLDMGFITDVDQIAARMPKDLQMLV 183 (209)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEE
T ss_pred EEEEeecccccccccHHHHHHHHHHCCCCCEEEE
Confidence 89999999997753 112333444555555544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=80.60 E-value=1.3 Score=40.82 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=40.0
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 454 (680)
..+.-.++.-++|.|||..++.++......+. +++.++-..-...+.+.+..+
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------~~~~is~e~~~~~~~~~~~~~ 76 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVENACANKE-------RAILFAYEESRAQLLRNAYSW 76 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------CEEEEESSSCHHHHHHHHHTT
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcc-------ccceeeccCCHHHHHHHHHHc
Confidence 34556889999999999999999998776653 478887766666666665554
|