Psyllid ID: psy12517

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------
MHHIKPTLKGDPLCPLGFHPQVRWPTRCKRCFRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRLKTPDKPSKADVDFILQVKDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKSVSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDDAYENVKYTNYGRRETSMDRLEAEEKARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLKASHNSPTTSRLSGGSTHSEVITTSDRKKKGLFGKLKQLTRSSHSVDRDSDTSQFDPGSDTSLDDSRNLKDRITGIFKKSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQMKKTTEEEQEECRRKLTE
ccccccccccccccccccccccccccccHHHccccHHHHccccccccccccccccccccccccccccHHccHHHcccccccccHHccccccccccccHHHHHHHHHHHHHHHccccccccccHHHccccHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHcccccccccccccccEcccccccccccccHHccccccccccccccccccccccccccccHHcccccHHHHHHHHHccHHHHHHccccHHHcccHHHHccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mhhikptlkgdplcplgfhpqvrwptrckrcfrdykehgnrnrdndlrkddftvsspslsswtsastirdykehgnrnrdndlrkddftvsspslsswtsastiresekknegrswtsstnlssvsssndsqnssrrpppedssnedddyrstKYVVRRRtshlpatstsssnaepstssnttrtrssasprlktpdkpskadVDFILQVKDAKKTrrkenletdteslagtettdttettlvndneysdQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTenedlndeKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREvcggmegvnKVERIQALEKELKLANETAEKLQKDLKEATDKLeranggkppklgalpktpsvETAEKLQKDLKEATDKLeranggkppklgalpktpsvekvsretltrggsqedptVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVraesstektqITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVlknqssdnVTKQITELKTQYEQEIKKLEDTLVQERQEYEDltnrydilegehVDIKASLVKEkennhgrlqqtqkgmwiskrpwskkrkittepsvakeehsksyqLQTTLQRLTEVAAELKrasqlpptpptteesQNRIRRAAFAAKksvstesdhtgesssralhrkgslyrkslsLEQTSQLAQEENIWkmtddndssltsFQSIDDayenvkytnygrretSMDRLEAEEKARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLkashnspttsrlsggsthsevittsdrkkkglfgklkqltrsshsvdrdsdtsqfdpgsdtslddsrnlKDRITGIFkksgstsransvDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKVNELEEDrllssgrtnkipglktRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQMKKTTEEEQEECRRKLTE
mhhikptlkgdplcplgfhpqvrwptrcKRCFRDYkehgnrnrdndlrkddftvsspslsswtsastirdykehgnrnrdndlrkddftvsspslsswtsastiresekknegrswtsstnlssvsssndsqnssrrpppedssnedddyrsTKYVVRRRtshlpatstsssnaepstssnttrtrssasprlktpdkpskadvdfilqvkdakktrrkenletdteslagtettdttettlvndneysDQIDLLRHELDNMKAkceklereksdiLLRRLasmetttskttaselLKLQQRVNelktenedlndekkslsLRVRELETEaaafkksnaaeREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKEleqtakncrilsfklrkserrseqleaekleaekkcrevcggmegvnkVERIQALEKELKLANETAEKLQKDLKEATDkleranggkppklgalpktpsvETAEKLQKDLKEATdkleranggkppklgalpktpsvekvsretltrggsqedptvlMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEkvraesstektqitgeleslksKLSALEAEKKkfetdileksskitqleasireereratdlsvkagsaasreLNQLREELTQLKkeaqrnaekvtklerdktsleenlksketqmtktisdlqtkCSTLEKSLTAEQKQKALkekelktkeseinvlknqssdnvtkQITELKTQYEQEIKKLEDTLVQERQEYEDltnrydilegEHVDIKASlvkekennhgrlqqtqkgmwiskrpwskkrkittepsvakeehsksyqlqtTLQRLTEVAAElkrasqlpptpptteesqnRIRRAAFAakksvstesdhtgesssralhrkgSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSiddayenvkytnygrretsmdrLEAEekarksdvaavkMRYDKRAtalsdelkaiqgqvlrfkrERDTFKHMLEGAQKTIadlkashnspttsrlsggsthsevittsdrkkkglfgklkqltrsshsvdrdsdtsqfdpgsdtslddsrnlkDRITGifkksgstsransvDDLKAVITSLEQQISCMEDELSESRLETSRLKtelvseksaaeiklseltskvneleedrllssgrtnkipglkTRMELAWHKEREEQQRLLQETSTLARDLRqtlfevererdkerleakrrfdqmkktteeeqeecrrklte
MHHIKPTLKGDPLCPLGFHPQVRWPTRCKRCFRDYKEHGnrnrdndlrkddFtvsspslsswtsastIRDYKEHGnrnrdndlrkddFtvsspslsswtsastIRESEKKNEGRswtsstnlssvsssndsqnssRRpppedssnedddYRSTKYVVRRRTSHLpatstsssnaepstssnttrtrssasPRLKTPDKPSKADVDFILQVKDAKKTRRKENLETDTESLAGtettdttettLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQleaekleaekkCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGeleslksklsaleaekkkFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLtaeqkqkalkekelktkeSEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKSVSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDDAYENVKYTNYGRRETSMDRLEAEEKARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLKASHNSPTTSRLSGGSTHSEVITTSDRkkkglfgklkQLTRSSHSVDRDSDTSQFDPGSDTSLDDSRNLKDRITGIFKKSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWHKereeqqrllqeTSTLARDLRQTLFEVERERDKERLEAKRRFDQMkktteeeqeecrrklte
***********PLCPLGFHPQVRWPTRCKRCFRDY*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VCG*******************************************************************************************************************************************ERYQRLYSVARDAFHPNLVQYLQIEK*************************************************************************************************************************************************************************************************YEDLTNRYDILEGEHVDIKA***********************************************************************************************************************************************************YENVKY*****************************************LKAIQGQVLRFK*************************************************************************************************************************************************************************************************************************************************************
***********PLCPLGFHPQVRWPTRCKR********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MHHIKPTLKGDPLCPLGFHPQVRWPTRCKRCFRDYKEHGNRNRDNDLRKDDFT***********ASTIRDYKEHGNRNRDNDLRKDDFT*************************************************************RSTKYVVRRRT***************************************KADVDFILQVKDAK**************LAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAF************LRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPK*******************DPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVR*********ITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPW*********************QLQTTLQRLTEVAAEL*****************NRIRRAA**********************HRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDDAYENVKYTNYGRRETS***************AAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLK**********************TSDRKKKGLFGKLKQL************************DDSRNLKDRITGIFKK********SVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQ******************
*******L*GDPLCPLGFHPQVRWPTRCKRCFRDYKEHG***************************************************************************************************************************************************************PSKADVDFILQVKDAKKTRRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKTQYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKSVSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDDAYENVKYTNYGRRETSMDRLEAEEKARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLKASHNSPTTSRLSGGSTHSEVITTSDRKKKGLFGKLKQLTRSSHSVDRDSDTSQFDPGSDTSLDDSRNLKDRITGIFKKSGSTSRANSVDDLKAVITSLEQQISCMEDELSESRLETSRLKTELVSEKSAAEIKLSELTSKVNELEEDRLLSSGRTNKIPGLKTRMELAWHKEREEQQRLLQETSTLARDLRQTLFEVERERDKERLEAKRRFDQMKKTTEEEQEEC******
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MHHIKPTLKGDPLCPLGFHPQVRWPTRCKRCFRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRESEKKNEGRSWTSSTNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSNAEPSTSSNTTRTRSSASPRLKTPDKPSKADVDFILQVKDAKKTRRKENLETDTESLAGTETTDTTETTLVNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRLASMETTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCREVCGGMEGVNKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKPPKLGALPKTPSxxxxxxxxxxxxxxxxxxxxxxxxKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDxxxxxxxxxxxxxxxxxxxxxRYQRLYSVARDAFHPNLVQYLQIEKVRAESSTExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMTKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHVDIKASLVKEKENNHGRLQQTQKGMWISKRPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVAAELKRASQLPPTPPTTEESQNRIRRAAFAAKKSVSTESDHTGESSSRALHRKGSLYRKSLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDDAYENVKYTNYGRRETSMDRLEAEEKARKSDVAAVKMRYDKRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLKASHNSPTTSRLSGGSTHSEVITTSDRKKKGLFGKLKQLTRSSHSVDRDSDTSQFDPGSDTSLDDSRNLKDRITGIFKKSGSTSRANSxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSRLKTELVSExxxxxxxxxxxxxxxxxxxxxRLLSSGRTNKIPGLKTRMELAWHKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCRRKLTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1286 2.2.26 [Sep-21-2011]
Q6NZL0945 Protein SOGA3 OS=Mus musc yes N/A 0.079 0.107 0.358 2e-09
Q5TF21947 Protein SOGA3 OS=Homo sap no N/A 0.079 0.107 0.358 3e-09
>sp|Q6NZL0|SOGA3_MOUSE Protein SOGA3 OS=Mus musculus GN=Soga3 PE=2 SV=2 Back     alignment and function desciption
 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 18/120 (15%)

Query: 361 LMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSER 420
           L +ENE +K E+  L  EMDEM+D F E+ A +   ++ ELE+  KNCRIL ++LRK+ER
Sbjct: 357 LREENETLKNEIDELRTEMDEMRDTFFEEDACQLQEMRHELERANKNCRILQYRLRKAER 416

Query: 421 RSEQLEAEKLEAEKKCREV-CGGMEGVNKVERIQALEKELKLANETAEKLQKDLKEATDK 479
                        K+ R    G ++G    E +++LE++LK+A + + +L  +L+   +K
Sbjct: 417 -------------KRLRYAQTGEIDG----ELLRSLEQDLKVAKDVSVRLHHELENVEEK 459

Mus musculus (taxid: 10090)
>sp|Q5TF21|SOGA3_HUMAN Protein SOGA3 OS=Homo sapiens GN=SOGA3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1286
270014997 1995 hypothetical protein TcasGA2_TC013627 [T 0.402 0.259 0.481 1e-131
189233711 1981 PREDICTED: similar to CG18304 CG18304-PA 0.393 0.255 0.476 1e-127
3287093691360 PREDICTED: hypothetical protein LOC10057 0.655 0.619 0.335 1e-124
242018837 2086 Centromeric protein E, putative [Pedicul 0.395 0.243 0.410 1e-114
157126267 1837 hypothetical protein AaeL_AAEL002070 [Ae 0.405 0.283 0.397 5e-96
357622970672 hypothetical protein KGM_07162 [Danaus p 0.254 0.486 0.509 6e-85
170031764 1878 conserved hypothetical protein [Culex qu 0.289 0.198 0.440 1e-73
312383165662 hypothetical protein AND_03874 [Anophele 0.225 0.438 0.508 3e-73
345492799 1433 PREDICTED: hypothetical protein LOC10011 0.290 0.260 0.4 2e-71
3071949371381 hypothetical protein EAI_02454 [Harpegna 0.544 0.506 0.310 8e-71
>gi|270014997|gb|EFA11445.1| hypothetical protein TcasGA2_TC013627 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  478 bits (1229), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 292/606 (48%), Positives = 381/606 (62%), Gaps = 88/606 (14%)

Query: 1   MHHIKPTLKGDPLCPLGFHPQVRWPTRCKRCFRDYKEHGNRNRDND--LRKDDFTVSSPS 58
           MHH+ P  KGDPLCPLGFHPQVRWPTRCKRCFRDYKEHG + RD +  LR+DD T S+PS
Sbjct: 1   MHHMYPLAKGDPLCPLGFHPQVRWPTRCKRCFRDYKEHGGKRRDEEPSLRRDDTTASTPS 60

Query: 59  LSSWTSASTIRDYKEHGNRNRDNDLRKDDFTVSSPSLSSWTSASTIRESEKKNEGRSWTS 118
           L SW+S              RD D  +    VSS +L+S    ++++     +   SWTS
Sbjct: 61  L-SWSS--------------RDADSERRRSWVSSSNLASDRDNNSVKSESNYSNPSSWTS 105

Query: 119 STNLSSVSSSNDSQNSSRRPPPEDSSNEDDDYRSTKYVVRRRTSHLPATSTSSSN-AEPS 177
           + +L+ +     +  +     P+      D  + T   V    S  P  S  S N +  +
Sbjct: 106 TPDLAKLEDDTQAVTTVSIKLPKRKQKPIDTGQRT---VSDSFSIKPEKSVFSKNDSLAA 162

Query: 178 TSSNTTRTRSSASPRLK---------TPDKPSKADVDFILQVKDAKKTRRKENL------ 222
            +    + + +A  + K           ++P+  DV F++QVK      RK  +      
Sbjct: 163 RARKLQQIKEAAEEKHKRIQIKEVKTISEEPTNHDVQFLIQVK------RKPTVVEDHHS 216

Query: 223 --ETDTESLAGTETTDTTETTLVN--DNEYSDQIDLLRHELDNMKAKCEKLEREKSDILL 278
             E D  S+AGTETTD   TTLV+  D+E  +Q++ L+ EL+  K KCE+LEREKSDILL
Sbjct: 217 EPEDDAVSIAGTETTD---TTLVDAHDHELREQLESLKKELETTKTKCERLEREKSDILL 273

Query: 279 RRLASMETTTSKTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFKKSN 338
           RRLA+METTTSKTTASE+LKLQQ+ NEL+   ED  DEKKSL+ +V+ELE E      + 
Sbjct: 274 RRLAAMETTTSKTTASEVLKLQQKCNELQQTLEDFRDEKKSLTFKVKELEEELEQRPTAQ 333

Query: 339 AAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLK 398
           AA++ A+ LR+KL AAE LCEELMDENE++KKELR +EE+MDEMQD+FREDQA EY+SLK
Sbjct: 334 AAQKIADELRSKLLAAETLCEELMDENEDIKKELRDMEEQMDEMQDNFREDQAVEYTSLK 393

Query: 399 KELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEKKCREVCGGMEGVNKVERIQALEKE 458
           KEL+QT KNCRILSFKLRK+ER++EQLE EK EAE+K +E+ GG   +  +E+++ LE++
Sbjct: 394 KELDQTTKNCRILSFKLRKAERKTEQLEQEKNEAERKLKEISGGQSTLANLEKMKQLEQD 453

Query: 459 LKLANETAEKLQKDLKEATDKLE---RANGGKPPKLGALPKTPSVETAEKLQKDLKEATD 515
           LKLANE + +LQK+L E   KL+   + +  K PKLG++ K PS                
Sbjct: 454 LKLANEVSIRLQKELDETNQKLQEESKTSKKKAPKLGSIGKFPS---------------- 497

Query: 516 KLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQL 575
               A+G                KVSRE+LTRGGSQ+DP  L+RDLQDSMEREADLREQL
Sbjct: 498 ----ADG----------------KVSRESLTRGGSQDDPAQLLRDLQDSMEREADLREQL 537

Query: 576 RFAEEE 581
           +FAEEE
Sbjct: 538 KFAEEE 543

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189233711|ref|XP_968604.2| PREDICTED: similar to CG18304 CG18304-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328709369|ref|XP_003243939.1| PREDICTED: hypothetical protein LOC100572121 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242018837|ref|XP_002429877.1| Centromeric protein E, putative [Pediculus humanus corporis] gi|212514911|gb|EEB17139.1| Centromeric protein E, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|157126267|ref|XP_001654566.1| hypothetical protein AaeL_AAEL002070 [Aedes aegypti] gi|108882538|gb|EAT46763.1| AAEL002070-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|357622970|gb|EHJ74308.1| hypothetical protein KGM_07162 [Danaus plexippus] Back     alignment and taxonomy information
>gi|170031764|ref|XP_001843754.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870925|gb|EDS34308.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|312383165|gb|EFR28355.1| hypothetical protein AND_03874 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|345492799|ref|XP_001602115.2| PREDICTED: hypothetical protein LOC100118032 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307194937|gb|EFN77052.1| hypothetical protein EAI_02454 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1286
WB|WBGene0000643618 ttn-1 [Caenorhabditis elegans 0.744 53.22 0.208 3.1e-20
WB|WBGene000103061133 F59A2.6 [Caenorhabditis elegan 0.723 0.821 0.194 1.8e-19
UNIPROTKB|P306221438 CLIP1 "CAP-Gly domain-containi 0.416 0.372 0.214 2.5e-19
UNIPROTKB|F1REW51204 CLIP1 "Uncharacterized protein 0.416 0.445 0.212 3.2e-19
UNIPROTKB|F1P1D5 1872 LOC429272 "Uncharacterized pro 0.669 0.459 0.203 4e-19
UNIPROTKB|F1NPB7 1942 LOC429272 "Uncharacterized pro 0.669 0.443 0.203 4.4e-19
DICTYBASE|DDB_G0286355 2116 mhcA "myosin heavy chain" [Dic 0.688 0.418 0.203 1.1e-18
SGD|S0000022161790 USO1 "Protein involved in the 0.576 0.413 0.206 1.2e-18
UNIPROTKB|P128831935 MYH7 "Myosin-7" [Homo sapiens 0.687 0.456 0.203 4.3e-18
UNIPROTKB|F5H0N71013 CLIP1 "CAP-Gly domain-containi 0.450 0.571 0.222 4.9e-18
WB|WBGene00006436 ttn-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 315 (115.9 bits), Expect = 3.1e-20, Sum P(3) = 3.1e-20
 Identities = 219/1050 (20%), Positives = 442/1050 (42%)

Query:   196 PDKPSKADVDFILQVKDAKKTRRKENLETDTESLAGXXXXXXXXXXLVNDNEYSDQIDLL 255
             P    K+D   I    DA + ++ +  E++ + +            L + ++ ++  D  
Sbjct:  9267 PQPGGKSDSS-ISSTSDASEVKQVQQSESEAQKVT----EKPETAKLESKSKMTE--DTT 9319

Query:   256 RHELDNMKAKCEKLEREKSDILLRRLASMETTTSKTTASELLKLQQRVNELKTENEDLND 315
             + E DN +   EK    K  +L ++    ++T S+T+ +  ++     +E +T+N    D
Sbjct:  9320 K-ESDNKETVDEK---PKKKVLKKKTEKSDSTISETSETSAVE-SAGPSESETQNVAAVD 9374

Query:   316 -EKKSLSLRVRE-LETEAAAFKKSNAAER-EAEALRTKLAAAEGLCEELMDENEEMKKEL 372
              EKK      ++ LE E A  K +    + EAEA + K AA E   ++  ++ E   K+ 
Sbjct:  9375 KEKKQKETDEKQKLEAEIAGKKSTEQKSKLEAEA-KLKRAAEEDAAKKQKEKTEAASKKA 9433

Query:   373 RYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQXXXXXXXX 432
                 E++ E++   + ++A E  ++KK+ E   +N    + KL   + + E+        
Sbjct:  9434 A--AEKL-ELEKQAQINKAAEADAVKKQNELDEQNKLEATKKLAAEKLKLEEQSAAKSKQ 9490

Query:   433 XXXCREVCGGMEGVNKVERIQALEKELKL-----ANETAEKLQKD--LKEATDKLERANG 485
                 +            E+   LEK+ K      +NET E+  K   LK+ T+K + +  
Sbjct:  9491 AAEEQAKLDAQTKAKAAEKQTGLEKDEKSNKDSGSNETVEEKPKKKVLKKKTEKSDSSIS 9550

Query:   486 GKPPKLGALPKTPSVETAEKLQKDLKEATDKLERANGGKPPKLGA--LPKTPSVEKVSRE 543
              K      + ++     +E  QK + +AT K +  +  K  KL A    K  + EK   E
Sbjct:  9551 QKSDTSKTVAESAGSSESET-QK-VADATSKQKETD--KKQKLEAEITAKKSADEKSKLE 9606

Query:   544 TLTRG-GSQEDPTVLMRDLQDSMEREADLREQLRFAEE---ERYQRLYSVAR-DAFHPNL 598
             T ++   + ED     ++ +D ++ EAD+  +   AE+   E+  ++   A  DA     
Sbjct:  9607 TESKLIKAAEDAAKKQKEKEDKLKLEADVASKKAAAEKLELEKQAQIKKAAEADAVKKQK 9666

Query:   599 VQYLQIEKVRAESSTEKTQITGXXXXXXXXXXXXXXXXXXFETDILEKSSKITQLEASIR 658
              +  + +K+ +E++T+K                        E D ++K  ++ +      
Sbjct:  9667 -ELAEKQKLESEAATKKA------AAEKLKLEEQAQINKAAEADAVKKQKELDEKNKLEA 9719

Query:   659 EERERATDLSVKAGSAASRELNQLREELTQLKKEA-QRNAEKVTKLERDKTSLEENLKSK 717
              ++  A  L ++  SAA  +  Q  EE  +L  +  ++ AEK T LE+D  S +++ +SK
Sbjct:  9720 NKKSAAEKLKLEEESAAKSK--QTVEEQAKLDAQTKEKTAEKQTGLEKDDKSTKDS-ESK 9776

Query:   718 ETQMTKTISD-LQTKCSTLEKSLXXXXXXXXXXXXXXXXXXSEINVL-----KNQSSDNV 771
             ET   K     L+ K    + S+                  SE   +     K + +D  
Sbjct:  9777 ETVDEKPKKKVLKKKTEKSDSSISQKSVTSKTVVESGGPSESETQKVADAARKQKETDEK 9836

Query:   772 TK---QITELKT-------QYEQEIKKLEDTLVQERQEYEDLTNRYDILEGEHVDIKASL 821
              K   +IT  K+       + E ++KK  +    ++Q+ +D   + D    E    KA+ 
Sbjct:  9837 QKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDT---EAASKKAAA 9893

Query:   822 VKEKENNHGRLQQTQKGMWISK-RPWSKKRKITTEPSVAKEEHSKSYQLQTTLQRLTEVA 880
              K +     ++++  +   + K +  ++K+K+ +E +  K+  ++  +L+   ++  E A
Sbjct:  9894 EKLELEKQAQIKKAAEADAVKKEKELAEKQKLESE-AATKKAAAEKLKLEEQKKKDAETA 9952

Query:   881 AELKRASQLPPTPPTTEESQNRI--RRAAFAAKKSVSTESDHTGESSSRALHRKGSLYRK 938
             +  K+  Q        E+S+  +  +++A   K    T+S  T E+   ++  K    +K
Sbjct:  9953 SIEKQKEQ---EKLAQEQSKLEVDAKKSAEKQKLESETKSKKTEEAPKESVDEKP---KK 10006

Query:   939 SLSLEQTSQLAQEENIWKMTDDNDSSLTSFQSIDDAYENVKYTNYGRRETSMD---RLEA 995
              +  ++T +   + +I + +D   +   S    D   + V   +   ++   D   +LE+
Sbjct: 10007 KVLKKKTEK--SDSSISQKSDTAKTVAESAGQSDSETQKVSEADKAHKQKESDEKQKLES 10064

Query:   996 EEKARKSDVAAVKMRYD-KRATALSDELKAIQGQVLRFKRERDTFKHMLEGAQKTIADLK 1054
             E  A+KS     K+  + K    + DE    Q +    K+  D+ K   +  +K   + +
Sbjct: 10065 EIAAKKSAEQKSKLETEAKTKKVIEDESAKKQKEQEDKKKGDDSAKKQKDQKEKQKLESE 10124

Query:  1055 ASHNSPTTSRLSGGSTHSEVITTSDRXXXXXXXXXXQLTRSSHSVDRDSDTSQFDPGSDT 1114
             A+   PT+ +     T  E   + +           ++       D+ ++T + +  S T
Sbjct: 10125 ATSKKPTSEKQKDEKTPQEKAKSENETVMTTEPQQLEVKSEPKKSDK-TETVEKEVASST 10183

Query:  1115 SL-DDSRNL--KDRITGIFKKSGSTSRANSVDDLKAVIT--SLEQQISCMEDELSESR-L 1168
                DDS+    K++   I KK  +T    +  +L +  +   LE  IS   D ++ES  L
Sbjct: 10184 EKSDDSKTKEPKEKKKIIKKKKDTTKPQEASKELSSDESRIDLESDISLSLDTVTESDDL 10243

Query:  1169 ET-SRLKTELVSEKSAAEIKLSELTSKVNE 1197
              T S +K +  S++S  + ++ + TS+  +
Sbjct: 10244 STASTIKLQKESDESGIDSRMGQ-TSEAED 10272
GO:0004672 "protein kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0004713 "protein tyrosine kinase activity" evidence=IEA
GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP
GO:0031674 "I band" evidence=IDA
GO:0031672 "A band" evidence=IDA
WB|WBGene00010306 F59A2.6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P30622 CLIP1 "CAP-Gly domain-containing linker protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1REW5 CLIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1D5 LOC429272 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPB7 LOC429272 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286355 mhcA "myosin heavy chain" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|P12883 MYH7 "Myosin-7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F5H0N7 CLIP1 "CAP-Gly domain-containing linker protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1286
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-15
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-14
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-11
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 8e-11
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-10
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-08
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 2e-08
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-07
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 8e-07
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 9e-07
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-06
pfam01576859 pfam01576, Myosin_tail_1, Myosin tail 6e-06
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-06
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 6e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 2e-05
pfam13166713 pfam13166, AAA_13, AAA domain 2e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 2e-05
pfam09726680 pfam09726, Macoilin, Transmembrane protein 2e-05
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 3e-05
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 3e-05
pfam01496707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 3e-05
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 5e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-05
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 7e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-04
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 1e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 2e-04
pfam05622713 pfam05622, HOOK, HOOK protein 2e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
PRK04778569 PRK04778, PRK04778, septation ring formation regul 3e-04
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 4e-04
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 4e-04
pfam01496707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 5e-04
TIGR03007498 TIGR03007, pepcterm_ChnLen, polysaccharide chain l 5e-04
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 0.002
pfam05667536 pfam05667, DUF812, Protein of unknown function (DU 0.002
pfam08317321 pfam08317, Spc7, Spc7 kinetochore protein 0.002
COG4487438 COG4487, COG4487, Uncharacterized protein conserve 0.003
pfam07926132 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein 0.003
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 79.4 bits (196), Expect = 9e-15
 Identities = 148/692 (21%), Positives = 272/692 (39%), Gaps = 94/692 (13%)

Query: 217 RRKENLETDTESLAGTETTDTTETTLVNDNEYSDQIDLLRHELDNMKAKCEKLEREKSDI 276
            R E LE + E L   E  +  +  +    E  ++ + L  EL+ + A+ E+ + E  + 
Sbjct: 309 ERLEELENELEELE--ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEK 366

Query: 277 LLRRLASMETTTSK------TTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETE 330
           L   L  +E              +EL +++  + ELK E E L +  + LS R+ +L+ E
Sbjct: 367 LSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEE 426

Query: 331 AAAFK-KSNAAEREAEALRTKLAAAEGLCEELMDENEEMKKELRYLEEEMDEMQDHFRED 389
               + +    + E E L  +L   E   EEL D  +E+++EL  L+EE+  ++      
Sbjct: 427 LKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL 486

Query: 390 QADEYSSLKKELEQTAKNCRILSFKLRKSE-------------------------RRSEQ 424
           +A     L+ E   +     +L                                  R + 
Sbjct: 487 EA-RLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRLQA 545

Query: 425 LEAEKLEAEKKCREVCGGMEG----VNKVERIQALEKELKLANETAEKLQKDLKEATDKL 480
           +  E  E  KK  E     +        ++RI+ L      A      L  DL +   K 
Sbjct: 546 VVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKY 605

Query: 481 ERANGGKPPKLGALPKTPSVETAEKLQKDLKEAT-------DKLERA---NGGKPPKLGA 530
           E A       LG       +E A +L + L+          D +E +    GG   K  +
Sbjct: 606 EPAV---RFVLGDTLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSS 662

Query: 531 LPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSVA 590
           L +   ++++  E        E     ++ L++ +    DL E+LR   EE  +R     
Sbjct: 663 LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL-ERQLEEL 721

Query: 591 RDAFHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKI 650
           +        +  Q++    E   E  ++  ELE L+ +L  LE E +  E  + +   +I
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 651 TQLEASIREERERATDLSVK------AGSAASRELNQLREELTQLKKEAQRNAEKVTKLE 704
            +LE   +  +E   +L  +         A  REL  L +   +L++E +   E++ +LE
Sbjct: 782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELE 841

Query: 705 RDKTSLEENLKS---KETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEIN 761
                LEE L+    +  ++ + + +L+ +   LE  L   +++K   E+EL+  ESE+ 
Sbjct: 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA 901

Query: 762 VLKNQSSDNVTKQ-------------------------ITELKTQYEQEIKKLEDTL--- 793
            LK +      +                             L+T+ E+EI++LE+ +   
Sbjct: 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961

Query: 794 --VQER--QEYEDLTNRYDILEGEHVDIKASL 821
             V  R  +EYE++  RY+ L+ +  D++ + 
Sbjct: 962 GPVNLRAIEEYEEVEERYEELKSQREDLEEAK 993

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812) Back     alignment and domain information
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein Back     alignment and domain information
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1286
KOG0161|consensus1930 100.0
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 100.0
KOG4787|consensus852 100.0
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 99.87
COG11961163 Smc Chromosome segregation ATPases [Cell division 99.86
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 99.81
KOG0161|consensus1930 99.81
KOG4787|consensus852 99.68
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 99.67
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 99.59
KOG4674|consensus 1822 99.58
PRK02224880 chromosome segregation protein; Provisional 99.54
PRK02224880 chromosome segregation protein; Provisional 99.49
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 99.48
TIGR006061311 rad50 rad50. This family is based on the phylogeno 99.46
TIGR006061311 rad50 rad50. This family is based on the phylogeno 99.46
KOG0996|consensus1293 99.43
KOG4674|consensus 1822 99.4
KOG0933|consensus1174 99.38
COG11961163 Smc Chromosome segregation ATPases [Cell division 99.36
PRK03918880 chromosome segregation protein; Provisional 99.35
PF10174775 Cast: RIM-binding protein of the cytomatrix active 99.25
PRK03918880 chromosome segregation protein; Provisional 99.23
KOG0964|consensus1200 99.21
KOG0996|consensus1293 99.16
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 99.1
KOG0018|consensus1141 99.09
PF10174775 Cast: RIM-binding protein of the cytomatrix active 99.07
PRK04778569 septation ring formation regulator EzrA; Provision 98.88
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 98.82
PRK01156895 chromosome segregation protein; Provisional 98.61
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.58
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 98.38
PRK01156895 chromosome segregation protein; Provisional 98.34
KOG0976|consensus 1265 98.29
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 98.21
KOG0994|consensus1758 98.19
KOG0964|consensus 1200 98.16
KOG0612|consensus1317 98.15
KOG4643|consensus 1195 98.14
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.14
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.09
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 98.07
PF05701522 WEMBL: Weak chloroplast movement under blue light; 98.03
PRK04863 1486 mukB cell division protein MukB; Provisional 98.02
PF00038312 Filament: Intermediate filament protein; InterPro: 97.98
PRK048631486 mukB cell division protein MukB; Provisional 97.97
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 97.95
PF135141111 AAA_27: AAA domain 97.93
PF00038312 Filament: Intermediate filament protein; InterPro: 97.9
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.87
KOG0971|consensus1243 97.83
KOG0994|consensus1758 97.8
KOG0976|consensus 1265 97.77
KOG0978|consensus698 97.73
PF05701522 WEMBL: Weak chloroplast movement under blue light; 97.7
PF135141111 AAA_27: AAA domain 97.63
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.63
KOG4643|consensus1195 97.62
KOG0250|consensus1074 97.6
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 97.58
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 97.56
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 97.55
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 97.53
KOG0612|consensus1317 97.51
KOG0977|consensus546 97.45
KOG0978|consensus698 97.44
PF1136596 DUF3166: Protein of unknown function (DUF3166); In 97.44
KOG4673|consensus961 97.42
PRK04778569 septation ring formation regulator EzrA; Provision 97.4
KOG0977|consensus546 97.38
PRK11637428 AmiB activator; Provisional 97.38
PRK11637428 AmiB activator; Provisional 97.31
KOG0971|consensus1243 97.21
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 97.17
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 97.05
PHA02562562 46 endonuclease subunit; Provisional 96.98
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 96.86
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 96.78
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 96.76
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 96.71
PHA02562562 46 endonuclease subunit; Provisional 96.64
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 96.64
KOG0963|consensus629 96.56
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 96.56
KOG2991|consensus330 96.51
KOG1029|consensus 1118 96.28
KOG0980|consensus980 96.24
KOG1029|consensus1118 96.18
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 96.13
KOG0018|consensus1141 95.93
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 95.79
PF13851201 GAS: Growth-arrest specific micro-tubule binding 95.71
KOG4593|consensus716 95.67
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 95.64
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 95.63
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 95.45
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 95.39
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 95.29
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 95.28
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.14
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.11
KOG1003|consensus205 95.11
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.01
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 94.99
KOG0963|consensus629 94.97
KOG4673|consensus961 94.95
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 94.69
KOG0933|consensus1174 94.62
PRK09039343 hypothetical protein; Validated 94.25
PRK09039343 hypothetical protein; Validated 94.15
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 94.14
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 94.12
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 94.12
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 93.87
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 93.67
KOG0995|consensus581 93.64
COG4942420 Membrane-bound metallopeptidase [Cell division and 93.23
KOG0946|consensus970 93.05
KOG0250|consensus1074 92.37
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 92.31
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 92.0
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 91.88
PF13870177 DUF4201: Domain of unknown function (DUF4201) 91.66
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 91.54
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 91.3
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 90.88
KOG0982|consensus502 90.82
PF14073178 Cep57_CLD: Centrosome localisation domain of Cep57 90.81
PRK10929 1109 putative mechanosensitive channel protein; Provisi 90.79
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 90.45
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 90.37
KOG0962|consensus1294 90.34
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 90.2
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 90.14
KOG0980|consensus980 90.05
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 89.63
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 89.58
COG2433652 Uncharacterized conserved protein [Function unknow 89.5
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 89.24
PRK11281 1113 hypothetical protein; Provisional 89.18
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 88.8
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 88.72
PF15397258 DUF4618: Domain of unknown function (DUF4618) 88.04
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.93
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.79
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 87.52
PRK10698222 phage shock protein PspA; Provisional 87.46
KOG4360|consensus596 87.29
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 87.27
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 87.2
KOG1853|consensus333 86.83
COG2433652 Uncharacterized conserved protein [Function unknow 86.7
COG4942420 Membrane-bound metallopeptidase [Cell division and 86.63
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 86.48
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 86.21
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 86.17
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 85.78
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 85.78
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 85.63
PF13851201 GAS: Growth-arrest specific micro-tubule binding 85.15
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 85.1
PRK10361475 DNA recombination protein RmuC; Provisional 84.89
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 84.13
PF09304107 Cortex-I_coil: Cortexillin I, coiled coil; InterPr 84.06
COG49131104 Uncharacterized protein conserved in bacteria [Fun 84.0
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 83.96
KOG0999|consensus772 83.89
PF05010207 TACC: Transforming acidic coiled-coil-containing p 83.43
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 82.78
PF14073178 Cep57_CLD: Centrosome localisation domain of Cep57 82.32
KOG1003|consensus205 82.01
KOG1853|consensus333 81.77
COG4026290 Uncharacterized protein containing TOPRIM domain, 81.57
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 81.56
KOG0946|consensus970 80.97
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 80.34
>KOG0161|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.1e-56  Score=563.96  Aligned_cols=478  Identities=25%  Similarity=0.342  Sum_probs=455.8

Q ss_pred             cCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHH---HHHHHH
Q psy12517        290 KTTASELLKLQQRVNELKTENEDLNDEKKSLSLRVRELETEAAAFK------------KSNAAEREAEALR---TKLAAA  354 (1286)
Q Consensus       290 ~t~~sELekLQKklnELQqEIEDLe~Dkk~L~qrLreLEKKQKkfd------------k~eEld~sieELR---TKLlsL  354 (1286)
                      ......+..+++.+++|+++++|+..++...++.+.+|+++++.|+            ...+++.++.++|   ++++.+
T Consensus      1396 e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl 1475 (1930)
T KOG0161|consen 1396 EAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKL 1475 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3346677899999999999999999999999999999999999665            6788899999888   999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517        355 EGLCEELMDENEEMKKELRYLEEEMDEMQDHFREDQADEYSSLKKELEQTAKNCRILSFKLRKSERRSEQLEAEKLEAEK  434 (1286)
Q Consensus       355 E~alEEL~EeLEELKrE~KELReEmEELrDs~rEe~~de~~eL~KeLheleKncRiLq~kLrKaerk~EElE~E~~~~E~  434 (1286)
                      .+.++++.+.++.+.++++.+..++.++..++     +++   ||.+|+++|..|.|+.++.+++.+++++|+++++.|+
T Consensus      1476 ~~~lee~~e~~e~l~renk~l~~ei~dl~~~~-----~e~---~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1476 KNALEELLEQLEELRRENKNLSQEIEDLEEQK-----DEG---GKRVHELEKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999999999999999999999     888   9999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCcccHHHHH-HHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHH
Q psy12517        435 KCREVCGGMEGVNKVERI-QALEKEL----KLANETAEKLQKDLKEATDKLERANGGKPPKLGALPKTPSVETAEKLQKD  509 (1286)
Q Consensus       435 k~lrle~~~~gv~~~~~I-~eLEreL----k~akEvs~rLq~eLeelEekle~e~~~~~~~l~~~~~~~a~~~kkKLE~d  509 (1286)
                      +.++++     +++ +++ .++|++|    +.+++.++.|++.|+++++.++.+.++++         .+.+.++||++|
T Consensus      1548 ~~lr~~-----~~~-~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~---------e~~r~KKkle~d 1612 (1930)
T KOG0161|consen 1548 KKLRLQ-----LEL-QQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKS---------EALRSKKKLEGD 1612 (1930)
T ss_pred             HHHHHH-----HHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---------HHHhhhhhhhcc
Confidence            999987     676 566 9999999    78889999999999999999999999998         889999999999


Q ss_pred             HHHHHHHHHHhcCCCCccccCCCCCCccccchhhhhccCCCCcchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12517        510 LKEATDKLERANGGKPPKLGALPKTPSVEKVSRETLTRGGSQEDPTVLMRDLQDSMEREADLREQLRFAEEERYQRLYSV  589 (1286)
Q Consensus       510 L~ElE~kle~ank~k~ealkql~K~~~~~k~~~~sl~r~gsqe~~k~lqreLqds~Ere~DLkeQLrfaEEe~~~~~r~~  589 (1286)
                      |++++++++++|+.+.+++++++++                |.+++++|++++++.....|+++|++.+++++    .. 
T Consensus      1613 i~elE~~ld~ank~~~d~~K~lkk~----------------q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~----~~- 1671 (1930)
T KOG0161|consen 1613 INELEIQLDHANKANEDAQKQLKKL----------------QAQLKELQRELEDAQRAREELLEQLAEAERRL----AA- 1671 (1930)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHhh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-
Confidence            9999999999999999999999999                88999999999999999999999999999998    44 


Q ss_pred             hccCCCCchHHHHHHHHHHH----------hhhhhHHHHHHHHHhhhhhhhhHHHHHhhhchH--HHHHhHHHHhhhhhh
Q psy12517        590 ARDAFHPNLVQYLQIEKVRA----------ESSTEKTQITGELESLKSKLSALEAEKKKFETD--ILEKSSKITQLEASI  657 (1286)
Q Consensus       590 ~~~~~~~~~~L~~ElekLrs----------~ae~E~~EL~eELesL~sk~ssLe~eKRKLE~d--qLE~eLeE~q~E~e~  657 (1286)
                                |++++++|+.          +++.++.|+.++++.++++++++...|++|+++  +|++++++.+.++++
T Consensus      1672 ----------l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~ 1741 (1930)
T KOG0161|consen 1672 ----------LQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRA 1741 (1930)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      5566665544          688899999999999999999999999999999  999999999999999


Q ss_pred             hhhhhhhhhhHhhhcchhhhhHHHHHHHHHHHHHHHHHhHHHHHhHHHhHHHHHHhhHHHhhhh----hhhHHHHHHHHH
Q psy12517        658 REERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQM----TKTISDLQTKCS  733 (1286)
Q Consensus       658 ~~~~ER~kKa~~~~~~~~e~q~~qL~eEL~~Eqe~~QklE~~rk~LE~qvKELq~RL~E~Es~a----Kk~I~kLEaRI~  733 (1286)
                      +.  ||+++|..        ++++++++|..||++++|++++++.||++||||+.+|+++|+.+    |++|++||+||+
T Consensus      1742 ~~--Er~kka~~--------~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir 1811 (1930)
T KOG0161|consen 1742 AE--ERAKKAQA--------DAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIR 1811 (1930)
T ss_pred             hH--HHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence            99  99999999        99999999999999999999999999999999999999999998    899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc--chHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12517        734 TLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSD--NVTKQITELK-------TQYEQEIKKLEDTLVQERQEYEDLT  804 (1286)
Q Consensus       734 eLEeeLe~EqRek~ea~K~~RK~ERrIKEL~~Q~ee--kn~~rlqEl~-------KqyKRQlEEaEEea~~~~akyRKLQ  804 (1286)
                      +||.+|+.|.|++.+++|.+|++||+|+||.+|+++  +|.+++|+++       ++||||++++|+++++++++||++|
T Consensus      1812 ~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q 1891 (1930)
T KOG0161|consen 1812 ELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQ 1891 (1930)
T ss_pred             HHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998  9999999998       9999999999999999999999999


Q ss_pred             hhHhhhhhhhhHHHHHHHHHHHHHHHhhhhh
Q psy12517        805 NRYDILEGEHVDIKASLVKEKENNHGRLQQT  835 (1286)
Q Consensus       805 rELEeae~~~vE~ad~lE~ev~kLrsklr~~  835 (1286)
                      |++++++    +++++|++++++||+++|.+
T Consensus      1892 ~ele~a~----erad~~e~~~~~lr~k~r~~ 1918 (1930)
T KOG0161|consen 1892 RELEEAE----ERADTAESELNKLRSKLRST 1918 (1930)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence            9999999    99999999999999999993

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG4787|consensus Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG4787|consensus Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG4674|consensus Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0996|consensus Back     alignment and domain information
>KOG4674|consensus Back     alignment and domain information
>KOG0933|consensus Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0964|consensus Back     alignment and domain information
>KOG0996|consensus Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0018|consensus Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0976|consensus Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>KOG0964|consensus Back     alignment and domain information
>KOG0612|consensus Back     alignment and domain information
>KOG4643|consensus Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0971|consensus Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>KOG0976|consensus Back     alignment and domain information
>KOG0978|consensus Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG4643|consensus Back     alignment and domain information
>KOG0250|consensus Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0612|consensus Back     alignment and domain information
>KOG0977|consensus Back     alignment and domain information
>KOG0978|consensus Back     alignment and domain information
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function Back     alignment and domain information
>KOG4673|consensus Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0977|consensus Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0971|consensus Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0963|consensus Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG2991|consensus Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>KOG0980|consensus Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0018|consensus Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG4593|consensus Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG1003|consensus Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>KOG0963|consensus Back     alignment and domain information
>KOG4673|consensus Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0933|consensus Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0995|consensus Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0946|consensus Back     alignment and domain information
>KOG0250|consensus Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG0982|consensus Back     alignment and domain information
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0962|consensus Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG0980|consensus Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>KOG4360|consensus Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG1853|consensus Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) Back     alignment and domain information
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>KOG0999|consensus Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 Back     alignment and domain information
>KOG1003|consensus Back     alignment and domain information
>KOG1853|consensus Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0946|consensus Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1286
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-18
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-17
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-12
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-08
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 5e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 6e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 4e-06
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 6e-06
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-04
1yvl_A683 Signal transducer and activator of transcription 1 7e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 91.1 bits (226), Expect = 1e-18
 Identities = 55/288 (19%), Positives = 114/288 (39%), Gaps = 13/288 (4%)

Query: 558  MRDLQDSMEREADLR---EQLRFAEEERYQRLYSVARDAFHPNLVQYLQIEKVRAESSTE 614
               LQ+ ++ E +L    E++R     + Q L  +  +       +  + E+   +   E
Sbjct: 894  KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM----EARIEEEEERSQQLQAE 949

Query: 615  KTQITGELESLKSKLSALEAEKKKFETDILEKSSKITQLEASIREERERATDLSVKAGSA 674
            K ++  ++  L+ +L   EA ++K + + +    KI ++E  I    ++   L+ K    
Sbjct: 950  KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT-KERKL 1008

Query: 675  ASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLEENLKSKETQMT---KTISDLQTK 731
                ++ L   L + +++A+   +   K E   + LE  LK +E       K    L+ +
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068

Query: 732  CSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQSSDNVTKQITELKT--QYEQEIKKL 789
             S L + +   Q Q A  + +L  KE E+     +  D  +++   LK   + E  I  L
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128

Query: 790  EDTLVQERQEYEDLTNRYDILEGEHVDIKASLVKEKENNHGRLQQTQK 837
            ++ L  E+        +   L  E   +K  L    +    + +    
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1286
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.65
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.65
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.48
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.46
3zwh_Q45 Myosin-9; Ca-binding protein-motor protein complex 97.05
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 96.31
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.17
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.89
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 95.64
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.27
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.02
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 94.99
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.69
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 94.44
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 94.29
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 93.99
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 93.76
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.5
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 93.47
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.52
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 91.4
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 90.37
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 89.46
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 86.7
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 85.42
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 84.87
3i00_A120 HIP-I, huntingtin-interacting protein 1; transcrip 84.08
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 83.58
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 83.26
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 82.1
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 80.74
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 80.32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
Probab=98.65  E-value=4.9e-08  Score=124.23  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12517        295 ELLKLQQRVNELKTENEDLNDEKKSLSLRVREL  327 (1286)
Q Consensus       295 ELekLQKklnELQqEIEDLe~Dkk~L~qrLreL  327 (1286)
                      ++..+++.+..+...+..++..+..+...+..|
T Consensus       858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L  890 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL  890 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444443333333333
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1286
d1bjta_760 e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra 2e-04
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 36/201 (17%), Positives = 67/201 (33%), Gaps = 13/201 (6%)

Query: 594 FHPNLVQYLQIEKVRAESSTEKTQITGELESLKSKLSALEAEKKKFETDILEKSSKIT-- 651
              N V  +  E         + +     E L+ ++      + KF   I+EK   +T  
Sbjct: 567 KKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYS-FQVKFIKMIIEKELTVTNK 625

Query: 652 QLEASIREERERATDLSVKAGSAASRELNQLREELTQLKKEAQRNAEKVTKLERDKTSLE 711
              A I+E          K G       N    E     K A  + E       D  ++ 
Sbjct: 626 PRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVI 685

Query: 712 ENLKSKETQMTKTISDLQTKCSTLEKSLTAEQKQKALKEKELKTKESEINVLKNQS-SDN 770
              +       + +  ++        SLT E+ QK    K+ + KE+E+  L   S  D 
Sbjct: 686 NGPEELYGT-YEYLLGMRIW------SLTKERYQK--LLKQKQEKETELENLLKLSAKDI 736

Query: 771 VTKQITELKTQYEQEIKKLED 791
               +   +  Y++ +++  +
Sbjct: 737 WNTDLKAFEVGYQEFLQRDAE 757

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1286
d2ap3a1185 Hypothetical protein MW0975 (SA0943) {Staphylococc 84.83
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.83  E-value=12  Score=32.72  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q psy12517        310 NEDLNDEKKSLSLRVRELETEAA  332 (1286)
Q Consensus       310 IEDLe~Dkk~L~qrLreLEKKQK  332 (1286)
                      +.+....+......+..++....
T Consensus        17 ~~~~~~~~~~~~~k~~~~e~~~~   39 (185)
T d2ap3a1          17 IKDDEEPIKTVGKKIAELDEKKK   39 (185)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555555554