Psyllid ID: psy12535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MGPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASGTLLHPRQSSVRVS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHccHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHccccccEEEEEcccccccccccEEEEEEccEEEEEccHHHHHHcccHHHHHHcccHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccccccHHHHHHHHHHHHHHHHcccHcHHHHcccHHHccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHccccccccHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHHccccHcHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mgpilapmgpghpdpnsrRVVKVCALKedfaqlpsgdrtlvgdkgvslsggQRARISLARAVYKRADvyllddplsavdaHVGKHLFEDCItglhtgvprfdsrwgrsffgsaLGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLekgsveafGTTTQLLASGldftqlldapeeedkaenevddnasgtllhprqssvrvs
Flexible Loop (DISEMBL)
mgpilapmgpghpdpnsRRVVKVCALKEDfaqlpsgdrtlvgdkgvslsggqrarISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKaenevddnasgtllhprqssvrvs
Low Complexity Region (SEG)
MGPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASGTLLHPRQSSVRVS
Disordered region (IsUnstruct)
*******************VVKVCALKEDFAQLP***RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL********************************
Disordered Region (DISOPRED)
*GPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT***********************************
Disordered Region (DISEMBL)
MGPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPE**********DNASGTLLH*********
Disordered Region (DISPRO)
*GPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEE**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASGTLLHPRQSSVRVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
O15439	1325	Multidrug resistance-asso	no	N/A	0.693	0.109	0.410	6e-33
P33527	1531	Multidrug resistance-asso	no	N/A	0.698	0.095	0.425	2e-32
Q864R9	1531	Multidrug resistance-asso	N/A	N/A	0.698	0.095	0.425	5e-32
Q6UR05	1531	Multidrug resistance-asso	no	N/A	0.712	0.097	0.416	2e-31
P91660	1290	Probable multidrug resist	no	N/A	0.688	0.111	0.419	9e-31
Q8HXQ5	1530	Multidrug resistance-asso	no	N/A	0.712	0.097	0.411	2e-30
O35379	1528	Multidrug resistance-asso	no	N/A	0.736	0.100	0.413	5e-30
Q54JR2	1412	ABC transporter C family	yes	N/A	0.727	0.107	0.381	7e-30
Q5F364	1525	Multidrug resistance-asso	no	N/A	0.770	0.105	0.388	7e-30
Q8ST87	1334	ABC transporter C family	no	N/A	0.612	0.095	0.397	8e-30

>sp|O15439|MRP4_HUMAN Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3

 Score =  140 bits (353), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 99/178 (55%), Gaps = 33/178 (18%)

Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
            G  +      +V+K CALK+D   L  GD T++GD+G +LSGGQ+AR++LARAVY+ AD
Sbjct: 495 FGKKYEKERYEKVIKACALKKDLQLLEDGDLTVIGDRGTTLSGGQKARVNLARAVYQDAD 554

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLDDPLSAVDA V +HLFE CI  +                                 
Sbjct: 555 IYLLDDPLSAVDAEVSRHLFELCICQI--------------------------------- 581

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDK 185
           L EK  +L+THQ+QYL     +++L+ G +   GT T+ L SG+DF  LL    EE +
Sbjct: 582 LHEKITILVTHQLQYLKAASQILILKDGKMVQKGTYTEFLKSGIDFGSLLKKDNEESE 639

May be an organic anion pump relevant to cellular detoxification.
Homo sapiens (taxid: 9606)

>sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=3

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 102/181 (56%), Gaps = 35/181 (19%)

Query: 14  DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDD 73
           +P  R V++ CAL  D   LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY  AD+YL DD
Sbjct: 734 EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 793

Query: 74  PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTV 133
           PLSAVDAHVGKH+FE+ I                       G +G         LK KT 
Sbjct: 794 PLSAVDAHVGKHIFENVI-----------------------GPKG--------MLKNKTR 822

Query: 134 MLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL----DAPEEEDKAENE 189
           +L+TH + YL  VD ++++  G +   G+  +LLA    F + L       +E+D  EN 
Sbjct: 823 ILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASTEQEQDAEENG 882

Query: 190 V 190
           V
Sbjct: 883 V 883

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Homo sapiens (taxid: 9606)

>sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1 OS=Macaca fascicularis GN=ABCC1 PE=2 SV=1

 Score =  137 bits (345), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 103/181 (56%), Gaps = 35/181 (19%)

Query: 14  DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDD 73
           +P  R V++ CAL  D   LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY  AD+YL DD
Sbjct: 734 EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYCNADIYLFDD 793

Query: 74  PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTV 133
           PLSAVDAHVGKH+FE+ I                       G +G         LK KT 
Sbjct: 794 PLSAVDAHVGKHIFENVI-----------------------GPKG--------MLKNKTR 822

Query: 134 MLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL----DAPEEEDKAENE 189
           +L+TH + YL  VD ++++  G +   G+  +LLA    F + L     A +E+D  +N 
Sbjct: 823 ILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASAEQEQDPEDNG 882

Query: 190 V 190
           V
Sbjct: 883 V 883

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Macaca fascicularis (taxid: 9541)

>sp|Q6UR05|MRP1_CANFA Multidrug resistance-associated protein 1 OS=Canis familiaris GN=ABCC1 PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 101/180 (56%), Gaps = 31/180 (17%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           + V++ CAL  D   LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY  +D+YL DDPLSA
Sbjct: 738 KAVIEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYCDSDIYLFDDPLSA 797

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VDAHVGKH+FE+ I                       G +G         LK KT +L+T
Sbjct: 798 VDAHVGKHIFENVI-----------------------GPKG--------MLKNKTRLLVT 826

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASGT 197
           H I YL  VD ++++  G +   G+  +LLA    F + L      D+ + E DD  +G 
Sbjct: 827 HSISYLPQVDVIIVMTGGKISEMGSYQELLARDGAFAEFLRTYASGDQEQAEQDDGLTGV 886

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Canis familiaris (taxid: 9615)

>sp|P91660|L259_DROME Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster GN=l(2)03659 PE=2 SV=3

 Score =  133 bits (334), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 103/181 (56%), Gaps = 37/181 (20%)

Query: 11  GHPDPNSR--RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
           G P  + R   VVK CAL+ DF  LP  D T+VG++G +LSGGQ+ARISLAR+VY++A +
Sbjct: 502 GQPMDSQRYEEVVKKCALERDFDLLPLRDNTIVGERGATLSGGQKARISLARSVYRKASI 561

Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
           YLLDDPLSAVDA V +HLF+ C+ G                                  L
Sbjct: 562 YLLDDPLSAVDASVARHLFDQCVRG---------------------------------HL 588

Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAEN 188
           +  TV+L+THQ Q+L HVD +++L  G ++A G    LL +GL     L +  + DKA+ 
Sbjct: 589 RGSTVVLVTHQEQFLPHVDQIVILANGQIKALGDYESLLKTGL--ITGLGSLSKTDKAKT 646

Query: 189 E 189
           E
Sbjct: 647 E 647

Vital for development.

Drosophila melanogaster (taxid: 7227)

>sp|Q8HXQ5|MRP1_BOVIN Multidrug resistance-associated protein 1 OS=Bos taurus GN=ABCC1 PE=2 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 102/180 (56%), Gaps = 31/180 (17%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           + VV+ CAL  D   LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY  +DVYLLDDPLSA
Sbjct: 738 KAVVEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYCDSDVYLLDDPLSA 797

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VDAHVGKH+FE+ I                       G +G         LK KT +L+T
Sbjct: 798 VDAHVGKHIFENVI-----------------------GPKG--------LLKNKTRLLVT 826

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASGT 197
           H I YL  +D ++++  G +   G+  +LLA    F + L      ++ + + +D  +G 
Sbjct: 827 HAISYLPQMDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASAEQEQGQPEDGLAGV 886

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. May protect milk against xenobiotics. Hydrolyzes ATP with low efficiency.

Bos taurus (taxid: 9913)

>sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1

 Score =  130 bits (328), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 106/191 (55%), Gaps = 37/191 (19%)

Query: 11  GHP--DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
           GHP  +   + V++ CAL  D   LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY  +D+
Sbjct: 729 GHPLQENYYKAVMEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNSDI 788

Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
           YL DDPLSAVDAHVGKH+FE  +                          G + L     L
Sbjct: 789 YLFDDPLSAVDAHVGKHIFEKVV--------------------------GPMGL-----L 817

Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD--APEEEDKA 186
           K KT +L+TH I YL  VD ++++  G +   G+  +LL     F + L   A  E+D A
Sbjct: 818 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLDRDGAFAEFLRTYANAEQDLA 877

Query: 187 ENEVDDNASGT 197
               DD+ SG+
Sbjct: 878 SE--DDSVSGS 886

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Mus musculus (taxid: 10090)

>sp|Q54JR2|ABCC3_DICDI ABC transporter C family member 3 OS=Dictyostelium discoideum GN=abcC3 PE=3 SV=1

 Score =  130 bits (327), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 34/186 (18%)

Query: 9   GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
           G  + +   R+V++VCAL+ D    P GD   +G++GV+LSGGQ+ R+S+ARAVY  +DV
Sbjct: 525 GSPYDEAKYRKVLEVCALERDIELFPQGDLVEIGERGVNLSGGQKQRVSIARAVYSDSDV 584

Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
           Y+LDDPLSAVDAHVGKHLF  C  G+                                 L
Sbjct: 585 YILDDPLSAVDAHVGKHLFHRCFKGI---------------------------------L 611

Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAEN 188
           K KTV+L  +Q+ YL    + ++L+ G +   G+  QL+ +  +F+ LL A   ++ A N
Sbjct: 612 KSKTVILAANQLNYLPFAHNTVVLKAGEISERGSYQQLINAQKEFSGLLQAYGVDESAVN 671

Query: 189 E-VDDN 193
           E V+D+
Sbjct: 672 EDVEDD 677

Dictyostelium discoideum (taxid: 44689)

>sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1

 Score =  130 bits (326), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 102/193 (52%), Gaps = 32/193 (16%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           +RV++ CAL  D   LP GDRT +G+KGV+LSGGQ+ R+SLARAVY  AD YL DDPLSA
Sbjct: 735 KRVIEACALLPDLEILPMGDRTEIGEKGVNLSGGQKQRVSLARAVYCNADTYLFDDPLSA 794

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VDAHVGKH+FE  I                       G +G         LK KT +L+T
Sbjct: 795 VDAHVGKHIFEKVI-----------------------GPKG--------ILKNKTRVLVT 823

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA-PEEEDKAENEVDDNASG 196
           H + YL  +D ++++  G +   G+  +LL     F + L      E   E+    + SG
Sbjct: 824 HAVNYLPQMDTILVMTDGEISEMGSYQELLKQDGAFAEFLRTYANAEQSMESSDASSPSG 883

Query: 197 TLLHPRQSSVRVS 209
               P ++ V V+
Sbjct: 884 KEGKPVENGVLVN 896

Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Gallus gallus (taxid: 9031)

>sp|Q8ST87|ABCCA_DICDI ABC transporter C family member 10 OS=Dictyostelium discoideum GN=abcC10 PE=3 SV=1

 Score =  130 bits (326), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 94/161 (58%), Gaps = 33/161 (20%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           ++V++VCALK D    P GD   +G++G++LSGGQ+ R+S+ARAVY  ADVY+LDDPLSA
Sbjct: 519 QKVLEVCALKRDIELFPQGDSVEIGERGINLSGGQKQRVSIARAVYSDADVYILDDPLSA 578

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VD+HVGKHLF  C  G+                                 L  KTV+L+ 
Sbjct: 579 VDSHVGKHLFHKCFKGI---------------------------------LSSKTVILVA 605

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD 178
           +Q+ YL   D+ ++L+ G +   GT  +L+ S L+F+ +L+
Sbjct: 606 NQLNYLPFADNTVVLKSGEIVERGTYYELINSKLEFSSILE 646

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
328699977	1347	PREDICTED: probable multidrug resistance	0.746	0.115	0.494	1e-43
328699975	1351	PREDICTED: probable multidrug resistance	0.779	0.120	0.478	2e-43
328724603	1357	PREDICTED: probable multidrug resistance	0.665	0.102	0.528	3e-42
242005590	1146	predicted protein [Pediculus humanus cor	0.732	0.133	0.465	7e-41
328720727	1347	PREDICTED: multidrug resistance-associat	0.751	0.116	0.453	8e-41
195396234	1432	GJ11099 [Drosophila virilis] gi|19414344	0.688	0.100	0.480	2e-40
270006563	1317	hypothetical protein TcasGA2_TC010434 [T	0.626	0.099	0.536	3e-40
270008024	2571	hypothetical protein TcasGA2_TC014776 [T	0.703	0.057	0.486	3e-40
91084133	1288	PREDICTED: similar to ATP-binding casset	0.703	0.114	0.486	3e-40
328720742	1425	PREDICTED: probable multidrug resistance	0.741	0.108	0.448	4e-40

>gi|328699977|ref|XP_003241113.1| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Acyrthosiphon pisum]

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 97/196 (49%), Positives = 126/196 (64%), Gaps = 40/196 (20%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           + V+KVCALK DF QLP GDR+LVG++GVSLSGGQRAR++LARAVYK+AD+YLLDDPLSA
Sbjct: 540 KEVIKVCALKTDFKQLPYGDRSLVGERGVSLSGGQRARVNLARAVYKQADIYLLDDPLSA 599

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VD HVGKHLFE CI G                                 +LK KT +LIT
Sbjct: 600 VDTHVGKHLFEKCIKG---------------------------------YLKNKTCILIT 626

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVD-DNASG 196
           HQIQYL+ VD ++L+E  ++ A G+  +L +SGLDFT+LL +  EE   ++E++  NA+ 
Sbjct: 627 HQIQYLSSVDQIVLMENANILAEGSYQELQSSGLDFTKLLRS-SEETTTDSEINIKNATS 685

Query: 197 TLLH-----PRQSSVR 207
             L       RQ S++
Sbjct: 686 NSLEQHSELSRQGSIK 701

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699975|ref|XP_001948798.2| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Acyrthosiphon pisum]

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 98/205 (47%), Positives = 128/205 (62%), Gaps = 42/205 (20%)

Query: 11  GHPDPNSR--RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
           G P  ++R   V+KVCALK DF QLP GD++LVG++GVSLSGGQRAR++LARA+YK+AD+
Sbjct: 529 GSPMDHNRYKEVIKVCALKTDFKQLPYGDKSLVGERGVSLSGGQRARVNLARAIYKQADI 588

Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
           YLLDDPLSAVD HVGKHLFE CI G                                 +L
Sbjct: 589 YLLDDPLSAVDTHVGKHLFEKCIKG---------------------------------YL 615

Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAEN 188
           K KT +LITHQIQYL+ VD ++L+E  ++ A G+   L +SGLDFT+L  +  EE   + 
Sbjct: 616 KNKTCILITHQIQYLSSVDQIVLMENANILAEGSYQDLQSSGLDFTKLFKS-SEETTTDT 674

Query: 189 EVDDN--ASGTLLHP----RQSSVR 207
           E+D N   + +L  P    RQ S++
Sbjct: 675 EIDSNNATNKSLEQPSGLSRQESLK 699

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328724603|ref|XP_001951988.2| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Acyrthosiphon pisum]

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 115/174 (66%), Gaps = 35/174 (20%)

Query: 11  GHPDPNSR--RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
           G P  ++R   V+KVCALK DF QLP GDR+LVG++GVSLSGGQRAR++LARAVYK+AD+
Sbjct: 535 GSPMDHNRYKEVIKVCALKTDFKQLPYGDRSLVGERGVSLSGGQRARVNLARAVYKQADI 594

Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
           YLLDDPLSAVD HVGKHLFE CI G                                 +L
Sbjct: 595 YLLDDPLSAVDTHVGKHLFEKCIKG---------------------------------YL 621

Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEE 182
           KEKT +LITHQ+QYL  VD ++L+E  ++ A G+  +L +S LDFT+LL + EE
Sbjct: 622 KEKTCILITHQLQYLPSVDRIVLMENANILAEGSYQELQSSVLDFTKLLRSSEE 675

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005590|ref|XP_002423647.1| predicted protein [Pediculus humanus corporis] gi|212506807|gb|EEB10909.1| predicted protein [Pediculus humanus corporis]

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 119/189 (62%), Gaps = 36/189 (19%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           ++V++VCALK DF  LP GD+T +G++GVSLSGGQRARI+LARAVY+ AD+YLLDDPLSA
Sbjct: 517 QKVIQVCALKRDFEILPYGDKTFIGERGVSLSGGQRARINLARAVYREADIYLLDDPLSA 576

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VDAHVGKHL EDCI G                                 FLK KTV+L T
Sbjct: 577 VDAHVGKHLMEDCIVG---------------------------------FLKNKTVILAT 603

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASGT 197
           HQ+QYL  VD++++ + G + A GT  +L  SG+DF ++L    + +K E ++    S +
Sbjct: 604 HQLQYLNMVDNIIIFDNGKIAAEGTYQELQKSGVDFAEML---HQTEKKEEKMPIQESIS 660

Query: 198 LLHPRQSSV 206
            +  R+SS+
Sbjct: 661 SISTRKSSI 669

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720727|ref|XP_001948661.2| PREDICTED: multidrug resistance-associated protein 4-like [Acyrthosiphon pisum]

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 123/194 (63%), Gaps = 37/194 (19%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           ++V++VCALK D  Q   GD+T+VG++G+SLSGGQRARI+LARAVYK+AD+YLLDDPLSA
Sbjct: 540 KKVIQVCALKTDLEQFQYGDKTVVGERGISLSGGQRARINLARAVYKQADIYLLDDPLSA 599

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VDAHVG+HLF  CI G                                 +L+EKT +LIT
Sbjct: 600 VDAHVGRHLFRKCIKG---------------------------------YLREKTCILIT 626

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEE----DKAENEVDDN 193
           HQIQYL+ VD ++L+ KG+V A G+  +L  S LDFT++L +P  +       EN   + 
Sbjct: 627 HQIQYLSSVDQIILMHKGNVLAEGSYQELQKSDLDFTKILRSPAVKTITASYNENISKNT 686

Query: 194 ASGTLLHPRQSSVR 207
           +   +++ RQ+S++
Sbjct: 687 SPNRIVYSRQTSIQ 700

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396234|ref|XP_002056737.1| GJ11099 [Drosophila virilis] gi|194143446|gb|EDW59849.1| GJ11099 [Drosophila virilis]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 113/177 (63%), Gaps = 33/177 (18%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           R VVK CAL+ DF  LP GD+T+VG++G SLSGGQ+ARISLARAVY+RAD+YLLDDPLSA
Sbjct: 530 RTVVKKCALERDFELLPQGDKTIVGERGASLSGGQKARISLARAVYRRADIYLLDDPLSA 589

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VD HVG+HLF+ C+ G                                 +LK + V+L+T
Sbjct: 590 VDTHVGRHLFDQCMRG---------------------------------YLKSELVILVT 616

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNA 194
           HQ+Q+L H D +++++KG + A GT T +  SGLDF QLL  P + D+A N+ +  A
Sbjct: 617 HQLQFLEHADLLVIMDKGKISAMGTYTTMRRSGLDFAQLLTDPNKTDEAANDHESEA 673

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006563|gb|EFA03011.1| hypothetical protein TcasGA2_TC010434 [Tribolium castaneum]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 107/164 (65%), Gaps = 33/164 (20%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           + VVK CAL+ DF  LP GD+T+VGD+GVSLSGGQRARI+LARAVYK+AD+YLLDDPLSA
Sbjct: 537 KTVVKKCALERDFTLLPYGDKTMVGDRGVSLSGGQRARINLARAVYKQADIYLLDDPLSA 596

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VD HVGK LFE+CI G                                 +LK KTV+LIT
Sbjct: 597 VDTHVGKQLFENCIAG---------------------------------YLKNKTVILIT 623

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPE 181
           HQ+QYL  VD ++ L  G V+A G+  +L A+GLDFT LL A +
Sbjct: 624 HQLQYLKEVDQIIYLHDGVVKAQGSFKELQATGLDFTNLLGAAQ 667

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008024|gb|EFA04472.1| hypothetical protein TcasGA2_TC014776 [Tribolium castaneum]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 117/189 (61%), Gaps = 42/189 (22%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           R VVKVCAL+ DF Q P GDRT+VG++GVSLSGGQRARI+LARAVY+  DVYLLDDPLSA
Sbjct: 501 REVVKVCALERDFKQFPQGDRTVVGERGVSLSGGQRARINLARAVYRGGDVYLLDDPLSA 560

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VD HVG+HLF++CI                                   +L+ KT +LIT
Sbjct: 561 VDTHVGRHLFDECIV---------------------------------KYLRGKTRVLIT 587

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASGT 197
           HQ+QYL   DH+++L +G +EA G   +L+ S LDFT+LL + +E +K E         T
Sbjct: 588 HQLQYLKKADHIVVLNEGRIEAQGKFQELINSDLDFTKLLASQDETEKEE---------T 638

Query: 198 LLHPRQSSV 206
              PR+SSV
Sbjct: 639 AKAPRKSSV 647

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084133|ref|XP_969849.1| PREDICTED: similar to ATP-binding cassette transporter [Tribolium castaneum]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 117/189 (61%), Gaps = 42/189 (22%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           R VVKVCAL+ DF Q P GDRT+VG++GVSLSGGQRARI+LARAVY+  DVYLLDDPLSA
Sbjct: 501 REVVKVCALERDFKQFPQGDRTVVGERGVSLSGGQRARINLARAVYRGGDVYLLDDPLSA 560

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VD HVG+HLF++CI                                   +L+ KT +LIT
Sbjct: 561 VDTHVGRHLFDECIV---------------------------------KYLRGKTRVLIT 587

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASGT 197
           HQ+QYL   DH+++L +G +EA G   +L+ S LDFT+LL + +E +K E         T
Sbjct: 588 HQLQYLKKADHIVVLNEGRIEAQGKFQELINSDLDFTKLLASQDETEKEE---------T 638

Query: 198 LLHPRQSSV 206
              PR+SSV
Sbjct: 639 AKAPRKSSV 647

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720742|ref|XP_001948736.2| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Acyrthosiphon pisum]

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 121/196 (61%), Gaps = 41/196 (20%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           +RV++VCALK D  QL  GDRT+VG++GVSLSGGQRARI+LARA+YK AD+YLLDDPLSA
Sbjct: 627 KRVIQVCALKTDLEQLTYGDRTIVGERGVSLSGGQRARINLARAIYKEADIYLLDDPLSA 686

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VD  VGKHL+E CI                                  ++LKEKT +L+T
Sbjct: 687 VDTRVGKHLYEKCI----------------------------------NYLKEKTCILVT 712

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA-------PEEEDKAENEV 190
           HQIQYL +VD ++L+E G V   G+  +L  SGL FT+LL++       P  + K +   
Sbjct: 713 HQIQYLINVDQIVLMENGKVVTEGSYKELQTSGLHFTKLLESSTETAVLPGNDSKMDKSS 772

Query: 191 DDNASGTLLHPRQSSV 206
           ++N + ++ + R+ S+
Sbjct: 773 NNNIARSISYIRRESI 788

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
FB|FBgn0263316	1316	Mrp4 "Multidrug resistance pro	0.363	0.057	0.723	3.6e-38
FB|FBgn0038740	1362	CG4562 [Drosophila melanogaste	0.363	0.055	0.697	1.1e-37
FB|FBgn0032908	1225	CG9270 [Drosophila melanogaste	0.358	0.061	0.710	1.7e-37
FB|FBgn0032026	1355	CG7627 [Drosophila melanogaste	0.397	0.061	0.623	1.2e-36
FB|FBgn0039207	1402	CG5789 [Drosophila melanogaste	0.354	0.052	0.716	2.7e-36
ZFIN|ZDB-GENE-030616-511	1327	abcc4 "ATP-binding cassette, s	0.392	0.061	0.621	8.9e-35
UNIPROTKB|F1M3J4	433	F1M3J4 "Uncharacterized protei	0.349	0.168	0.671	2.2e-34
FB|FBgn0051792	1318	CG31792 [Drosophila melanogast	0.354	0.056	0.635	4.5e-33
FB|FBgn0051793	1307	CG31793 [Drosophila melanogast	0.358	0.057	0.697	6.7e-33
UNIPROTKB|B7Z3Q7	784	ABCC4 "Multidrug resistance-as	0.349	0.093	0.657	1.1e-31

FB|FBgn0263316 Mrp4 "Multidrug resistance protein 4 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 299 (110.3 bits), Expect = 3.6e-38, Sum P(2) = 3.6e-38
 Identities = 55/76 (72%), Positives = 66/76 (86%)

Query:    18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
             R VVK CAL+ DF  LP GD+T+VG++G SLSGGQ+ARISLARAVY+RAD+YLLDDPLSA
Sbjct:   517 RTVVKKCALERDFELLPFGDKTIVGERGASLSGGQKARISLARAVYRRADIYLLDDPLSA 576

Query:    78 VDAHVGKHLFEDCITG 93
             VD HVG+HLF+ C+ G
Sbjct:   577 VDTHVGRHLFDQCMRG 592

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034059 "response to anoxia" evidence=IMP

GO:0001666 "response to hypoxia" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

FB|FBgn0038740 CG4562 [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 53/76 (69%), Positives = 65/76 (85%)

Query:    18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
             R VVK CAL+ DF  LP  D+T+VG++G SLSGGQ+ARISLARAVY++AD+YLLDDPLSA
Sbjct:   538 RTVVKRCALERDFELLPYADKTIVGERGASLSGGQKARISLARAVYRKADIYLLDDPLSA 597

Query:    78 VDAHVGKHLFEDCITG 93
             VD HVG+HLF+ C+ G
Sbjct:   598 VDTHVGRHLFDQCMRG 613

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0032908 CG9270 [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
 Identities = 54/76 (71%), Positives = 65/76 (85%)

Query:    18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
             R V++ CAL+ DF +L  GDRT VG++G SLSGGQRARISLARAVY++AD YLLDDPLSA
Sbjct:   440 RNVIRNCALERDF-ELLHGDRTFVGERGASLSGGQRARISLARAVYRQADTYLLDDPLSA 498

Query:    78 VDAHVGKHLFEDCITG 93
             VD HVG+HLFE+C+ G
Sbjct:   499 VDTHVGRHLFEECMRG 514

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0032026 CG7627 [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 53/85 (62%), Positives = 64/85 (75%)

Query:    11 GHPDPNSR--RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
             G P    R  +VVK CAL+ DF  LP  D+T+VG++G SLSGGQ+ARISLARAVY+   +
Sbjct:   531 GQPMDRRRYAKVVKKCALERDFELLPFKDKTIVGERGASLSGGQKARISLARAVYRETSI 590

Query:    69 YLLDDPLSAVDAHVGKHLFEDCITG 93
             YLLDDPLSAVD HV +HLFE C+ G
Sbjct:   591 YLLDDPLSAVDTHVARHLFEQCMRG 615

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042060 "wound healing" evidence=IMP

FB|FBgn0039207 CG5789 [Drosophila melanogaster (taxid:7227)]

 Score = 285 (105.4 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 53/74 (71%), Positives = 64/74 (86%)

Query:    18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
             + V + CAL  DF QLP+GD+TLVG++G SLSGGQRARISLARAVYK A +YL+DDPLSA
Sbjct:   590 QEVTRCCALSTDFQQLPNGDKTLVGERGASLSGGQRARISLARAVYKPAQIYLMDDPLSA 649

Query:    78 VDAHVGKHLFEDCI 91
             VDAHVG+HLF++ I
Sbjct:   650 VDAHVGRHLFDEVI 663

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-030616-511 abcc4 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" [Danio rerio (taxid:7955)]

 Score = 281 (104.0 bits), Expect = 8.9e-35, Sum P(2) = 8.9e-35
 Identities = 51/82 (62%), Positives = 65/82 (79%)

Query:    19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
             RV++ CALK D   LP GD T++GD+G +LSGGQ+AR++LARAVY+ AD+YLLDDPLSAV
Sbjct:   508 RVLRACALKRDMELLPDGDLTVIGDRGATLSGGQKARVNLARAVYQDADIYLLDDPLSAV 567

Query:    79 DAHVGKHLFEDCITGLHTGVPR 100
             DA V +HLFE C+ G+    PR
Sbjct:   568 DAEVSRHLFEQCVCGILKDKPR 589

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1M3J4 F1M3J4 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 267 (99.0 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
 Identities = 49/73 (67%), Positives = 62/73 (84%)

Query:    19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
             +V+K CALK+D   L  GD T++GD+G +LSGGQ+AR++LARAVY+ AD+YLLDDPLSAV
Sbjct:   119 KVIKACALKKDLQLLEDGDLTVIGDRGATLSGGQKARVNLARAVYQDADIYLLDDPLSAV 178

Query:    79 DAHVGKHLFEDCI 91
             DA VGKHLF+ CI
Sbjct:   179 DAEVGKHLFQLCI 191

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

FB|FBgn0051792 CG31792 [Drosophila melanogaster (taxid:7227)]

 Score = 253 (94.1 bits), Expect = 4.5e-33, Sum P(2) = 4.5e-33
 Identities = 47/74 (63%), Positives = 61/74 (82%)

Query:    20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
             VV+ CAL+ DF  LP  D+T++GD+G SLSGGQ+ARISLAR+VY+ A +YLLDDPLSAVD
Sbjct:   497 VVRKCALERDFELLPLKDKTILGDRGASLSGGQKARISLARSVYRDASIYLLDDPLSAVD 556

Query:    80 AHVGKHLFEDCITG 93
             + V + LFE+C+ G
Sbjct:   557 SSVARRLFEECLRG 570

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0051793 CG31793 [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 6.7e-33, Sum P(2) = 6.7e-33
 Identities = 53/76 (69%), Positives = 64/76 (84%)

Query:    18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
             R V+K CAL+ D  +L  GD T+VG++G SLSGGQRARI LARAVY+RADVYLLDDPLSA
Sbjct:   529 RTVLKRCALERDL-ELLHGDGTIVGERGASLSGGQRARICLARAVYRRADVYLLDDPLSA 587

Query:    78 VDAHVGKHLFEDCITG 93
             VD HVG+HLF++C+ G
Sbjct:   588 VDTHVGRHLFDECMRG 603

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|B7Z3Q7 ABCC4 "Multidrug resistance-associated protein 4" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 48/73 (65%), Positives = 61/73 (83%)

Query:    19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
             +V+K CALK+D   L  GD T++GD+G +LSGGQ+AR++LARAVY+ AD+YLLDDPLSAV
Sbjct:   431 KVIKACALKKDLQLLEDGDLTVIGDRGTTLSGGQKARVNLARAVYQDADIYLLDDPLSAV 490

Query:    79 DAHVGKHLFEDCI 91
             DA V +HLFE CI
Sbjct:   491 DAEVSRHLFELCI 503

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	209
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	2e-57
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	5e-39
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	9e-38
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-36
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	2e-30
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	7e-30
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	9e-30
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	3e-26
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	4e-22
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-17
COG4988	559	COG4988, CydD, ABC-type transport system involved	3e-17
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	5e-17
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-16
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-15
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	3e-15
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	4e-15
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	5e-15
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	7e-15
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	7e-15
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-14
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	4e-14
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	9e-14
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-13
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	6e-13
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	7e-13
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-12
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	2e-12
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-11
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-11
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	1e-11
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-11
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	6e-11
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	8e-11
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-10
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-10
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-10
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-10
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-10
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-10
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	3e-10
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	6e-10
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	7e-10
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	9e-10
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	1e-09
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-09
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-09
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-09
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-09
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-09
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-09
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	5e-09
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	6e-09
COG5265	497	COG5265, ATM1, ABC-type transport system involved	7e-09
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-08
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-08
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	1e-08
COG4598	256	COG4598, HisP, ABC-type histidine transport system	2e-08
pfam00005	119	pfam00005, ABC_tran, ABC transporter	5e-08
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	7e-08
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	7e-08
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	9e-08
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-07
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-07
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	1e-07
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-07
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-07
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-07
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-07
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	3e-07
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	3e-07
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	3e-07
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	5e-07
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	5e-07
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	8e-07
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	8e-07
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	9e-07
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	9e-07
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	1e-06
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	1e-06
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	1e-06
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	1e-06
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-06
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-06
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	3e-06
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	3e-06
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	3e-06
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	4e-06
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	4e-06
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	4e-06
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	6e-06
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	6e-06
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	7e-06
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	8e-06
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	8e-06
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	9e-06
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	1e-05
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	1e-05
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-05
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	1e-05
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-05
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	1e-05
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	1e-05
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	2e-05
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-05
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	2e-05
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	2e-05
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-05
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-05
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	3e-05
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	3e-05
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	3e-05
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	3e-05
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-05
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	4e-05
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	4e-05
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	4e-05
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	4e-05
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	4e-05
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	4e-05
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	5e-05
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	5e-05
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	5e-05
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	5e-05
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	5e-05
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	6e-05
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	6e-05
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	6e-05
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	6e-05
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	7e-05
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	7e-05
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	7e-05
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	7e-05
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	7e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	8e-05
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	8e-05
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	8e-05
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	8e-05
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	9e-05
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	9e-05
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-04
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	1e-04
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	1e-04
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	1e-04
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	1e-04
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	1e-04
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	1e-04
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	1e-04
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-04
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	2e-04
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-04
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	2e-04
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-04
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	2e-04
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-04
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	2e-04
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	3e-04
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-04
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	3e-04
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	3e-04
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	3e-04
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	3e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	3e-04
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-04
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-04
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	3e-04
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	3e-04
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	3e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-04
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	4e-04
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	4e-04
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	4e-04
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	5e-04
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	5e-04
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	5e-04
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	5e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	6e-04
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	6e-04
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	6e-04
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	7e-04
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	7e-04
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	7e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	7e-04
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	7e-04
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	7e-04
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	8e-04
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	8e-04
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	8e-04
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	0.001
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	0.001
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	0.001
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	0.001
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	0.001
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	0.001
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	0.001
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	0.001
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	0.001
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	0.001
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	0.001
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	0.002
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	0.002
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	0.002
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	0.002
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	0.002
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	0.002
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	0.002
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	0.002
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	0.002
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	0.002
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	0.003
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	0.003
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	0.003
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	0.003
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	0.003
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	0.003
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	0.003
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	0.004
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.004
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	0.004

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score =  179 bits (458), Expect = 2e-57
 Identities = 65/139 (46%), Positives = 84/139 (60%), Gaps = 32/139 (23%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
            +V+K CAL+ D   LP GD T +G+KG++LSGGQ+ RISLARAVY  AD+YLLDDPLSA
Sbjct: 98  EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSA 157

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VDAHVG+H+FE+CI                          G L       L  KT +L+T
Sbjct: 158 VDAHVGRHIFENCI-------------------------LGLL-------LNNKTRILVT 185

Query: 138 HQIQYLTHVDHVMLLEKGS 156
           HQ+Q L H D +++L+ G 
Sbjct: 186 HQLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  142 bits (358), Expect = 5e-39
 Identities = 74/183 (40%), Positives = 99/183 (54%), Gaps = 35/183 (19%)

Query: 11  GHP--DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
           G    +   ++V++ CAL  D   LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY  AD+
Sbjct: 722 GKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 781

Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
           YL DDPLSAVDAHVGKH+FE  I                       G  G         L
Sbjct: 782 YLFDDPLSAVDAHVGKHIFEHVI-----------------------GPEG--------VL 810

Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD--APEEEDKA 186
           K KT +L+TH I YL  VD ++++  G +   G+  +LL     F + L   AP+E+   
Sbjct: 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGH 870

Query: 187 ENE 189
             +
Sbjct: 871 LED 873

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  138 bits (349), Expect = 9e-38
 Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 38/194 (19%)

Query: 19  RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
           R + V AL+ D   LP GD T +G++GV++SGGQ+ R+S+ARAVY  +DVY+ DDPLSA+
Sbjct: 712 RAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771

Query: 79  DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
           DAHVG+ +F+ CI                                    L+ KT +L+T+
Sbjct: 772 DAHVGRQVFDKCIKDE---------------------------------LRGKTRVLVTN 798

Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAP---EE--EDKAENEVDDN 193
           Q+ +L+ VD ++L+ +G ++  GT  +L  +G  F +L++     EE  E+  E E D  
Sbjct: 799 QLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQT 858

Query: 194 ASGTLLHPRQSSVR 207
           +S  + +   ++++
Sbjct: 859 SSKPVANGNANNLK 872

Length = 1622

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  135 bits (341), Expect = 1e-36
 Identities = 69/176 (39%), Positives = 92/176 (52%), Gaps = 35/176 (19%)

Query: 20  VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            V+V  L+ D AQL  G  T +G+KGV+LSGGQ+AR+SLARAVY   DVYLLDDPLSA+D
Sbjct: 755 AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814

Query: 80  AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQ 139
           AHVG+ + E+C  G                                  L  KT +L THQ
Sbjct: 815 AHVGERVVEECFLGA---------------------------------LAGKTRVLATHQ 841

Query: 140 IQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNAS 195
           +  +   D+V+ L  G VE  G++   + + L  T  L A  +E+K   E D +A 
Sbjct: 842 VHVVPRADYVVALGDGRVEFSGSSADFMRTSLYAT--LAAELKENKDSKEGDADAE 895

Length = 1560

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score =  112 bits (282), Expect = 2e-30
 Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 33/160 (20%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           + VVK C L+ED  + P  D T++G+ G++LSGGQRARISLARAVYK AD+YLLD P   
Sbjct: 130 KSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           +D    K +FE C+  L                                 +  KT +L+T
Sbjct: 190 LDVFTEKEIFESCVCKL---------------------------------MANKTRILVT 216

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
            ++++L   D +++L +GS   +GT ++L +   DF+  L
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score =  115 bits (290), Expect = 7e-30
 Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 35/179 (19%)

Query: 19  RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
           R + V AL+ D   LP  D T +G++GV++SGGQ+ R+S+ARAVY  +D+Y+ DDPLSA+
Sbjct: 712 RAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771

Query: 79  DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
           DAHV   +F+ C+                                    LK KT +L+T+
Sbjct: 772 DAHVAHQVFDSCM---------------------------------KDELKGKTRVLVTN 798

Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD--APEEEDKAENEVDDNAS 195
           Q+ +L  +D ++L+ +G ++  GT  +L  SG  F +L++     +  +  N  D+N  
Sbjct: 799 QLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENIL 857

Length = 1495

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score =  115 bits (289), Expect = 9e-30
 Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 33/172 (19%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
             V+K C L+ED A  P  D+T++G+ G++LSGGQRARISLARAVYK AD+YLLD P + 
Sbjct: 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTH 578

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           +D    K +FE C+  L                                 +  KT +L+T
Sbjct: 579 LDVVTEKEIFESCLCKL---------------------------------MSNKTRILVT 605

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENE 189
            ++++L   D ++LL +G    +GT ++L A   DF+ LL   E  D    E
Sbjct: 606 SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAE 657

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score =  100 bits (249), Expect = 3e-26
 Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 31/139 (22%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           + V   C+L+ D   LP GD+T +G++G++LSGGQR RI +ARA+Y+  ++  LDDP SA
Sbjct: 111 KAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSA 170

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           +D H+  HL ++                            G L  ++     ++T++L+T
Sbjct: 171 LDIHLSDHLMQE----------------------------GILKFLQDD---KRTLVLVT 199

Query: 138 HQIQYLTHVDHVMLLEKGS 156
           H++QYL H D ++ ++ GS
Sbjct: 200 HKLQYLPHADWIIAMKDGS 218

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 93.3 bits (232), Expect = 4e-22
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 34/166 (20%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
              +K+    E  A LP G  T+VG++GV+LSGGQR R+++ARA+ +   + +LD+  SA
Sbjct: 436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSA 495

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           +D      + +                                       LK +T ++I 
Sbjct: 496 LDTETEALIQD----------------------------------ALKKLLKGRTTLIIA 521

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEE 183
           H++  + + D +++L+ G +   GT  +LLA G  + +L  A    
Sbjct: 522 HRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGGA 567

Length = 567

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 42/192 (21%)

Query: 11  GHPDPNSR---RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G PD   +    V ++ ++ +D  +LP G  T VG++GV LSGGQ+ RIS+ARA+   A+
Sbjct: 412 GRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + +LDD LSAVD      +  +              +WG                     
Sbjct: 472 ILILDDALSAVDGRTEHQILHNL------------RQWGE-------------------- 499

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA-----SGLDFTQLLDAPEE 182
              +TV++  H++  LT    +++++ G +   G   QL         +   Q L+A  +
Sbjct: 500 --GRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQLEAALD 557

Query: 183 EDKAENEVDDNA 194
           +     E   +A
Sbjct: 558 DAPEIREEAVDA 569

Length = 569

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 34/154 (22%)

Query: 29  DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
           +F   P G  T++G+ G  LSGGQ  R++LARA+   A + LLD+P + +DA        
Sbjct: 438 EFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE------- 490

Query: 89  DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
                                  +   +  AL        K+KTV++ITH+++     D 
Sbjct: 491 -----------------------TEQIILQAL----QELAKQKTVLVITHRLEDAADADR 523

Query: 149 VMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEE 182
           +++L+ G +   GT  +L      +  LL   E 
Sbjct: 524 IVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557

Length = 559

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 37/163 (22%)

Query: 11  GHPDPNSRRVVKVC---ALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G+P+     +++        E    LP G  T VG+ G +LSGGQR R++LARA+  +  
Sbjct: 570 GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + LLD+  SA+D      + +                                +L++   
Sbjct: 630 ILLLDEATSALDPETEAIILQ--------------------------------NLLQ--I 655

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
           L+ +TV++I H++  +   D +++L++G +   G+  +LLA G
Sbjct: 656 LQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698

Length = 709

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 72.4 bits (179), Expect = 3e-16
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 34/108 (31%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQR RI++ARA+ +   + +LD+  SA+D      + E                   
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE------------------- 137

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG 155
                AL           +  K KTV++I H++  +   D +++L+ G
Sbjct: 138 -----AL----------RALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 74.4 bits (183), Expect = 1e-15
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 36/165 (21%)

Query: 13  PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLD 72
           PD       K     +   + P+G  T VG+KG  LSGGQ+ RI++ARA+ ++  V +LD
Sbjct: 583 PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD 642

Query: 73  DPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKT 132
           +  SA+DA   + L E                  RS                      +T
Sbjct: 643 EATSALDAECEQLLQES-----------------RSR-------------------ASRT 666

Query: 133 VMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
           V+LI H++  +   D +++L+KGSV   GT  QL+     +  L+
Sbjct: 667 VLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 34/153 (22%)

Query: 31  AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90
             LP G  T +GD+   LS GQ  R++LARA+ +   + LLD+P +++DAH         
Sbjct: 469 PLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH--------- 519

Query: 91  ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVM 150
                                S   V  AL     +  + +T +++THQ++ L   D + 
Sbjct: 520 ---------------------SEQLVMQAL----NAASRRQTTLMVTHQLEDLAQWDQIW 554

Query: 151 LLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEE 183
           +++ G +   G   +L  +G  F  LL   +EE
Sbjct: 555 VMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587

Length = 588

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 34/153 (22%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
               K   + +   + P G  T+VG++G+ LSGG++ R+++ARA+ K   + LLD+  SA
Sbjct: 108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSA 167

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           +D H  + +                                AL  V     K +T ++I 
Sbjct: 168 LDTHTEREIQA------------------------------ALRDV----SKGRTTIVIA 193

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
           H++  + + D +++L+ G +   GT  +LLA G
Sbjct: 194 HRLSTIVNADKIIVLKDGRIVERGTHEELLAKG 226

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 33/136 (24%)

Query: 33  LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92
           LP G  T +G+ G +LSGGQR RI+LARA+Y    + +LD+P S +D+            
Sbjct: 458 LPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE----------- 506

Query: 93  GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152
                             G A  +  A+   +    +  TV++I H+   L  VD +++L
Sbjct: 507 ------------------GEA-ALAAAILAAK---ARGGTVVVIAHRPSALASVDKILVL 544

Query: 153 EKGSVEAFGTTTQLLA 168
           + G + AFG   ++LA
Sbjct: 545 QDGRIAAFGPREEVLA 560

Length = 580

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 70.3 bits (173), Expect = 7e-15
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 34/145 (23%)

Query: 32  QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
           +LP G  T++G++GV LSGGQR RI++ARA+ K   + +LD+  SA+D    + L +  +
Sbjct: 123 ELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDT-ESERLVQAAL 181

Query: 92  TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVML 151
             L                                 +K +T  +I H++  + + D +++
Sbjct: 182 ERL---------------------------------MKNRTTFVIAHRLSTIENADRIVV 208

Query: 152 LEKGSVEAFGTTTQLLASGLDFTQL 176
           LE G +   GT  +LLA G  + +L
Sbjct: 209 LEDGKIVERGTHEELLAQGGVYAKL 233

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 70.3 bits (173), Expect = 7e-15
 Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 37/163 (22%)

Query: 11  GHPDPNSRRVVKVCALKE--DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G PD     V +        DF   LP G  TLVG++G  LSGGQ+ RI++ARA+ +   
Sbjct: 100 GKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + LLD+  SA+DA                               S   V+ AL       
Sbjct: 160 ILLLDEATSALDAE------------------------------SEKLVQEALDRAM--- 186

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
            K +T ++I H++  + + D + +L+ G V   GT  +L+A  
Sbjct: 187 -KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 36/158 (22%)

Query: 14  DPNSRRVV---KVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYL 70
           + +  +++   K+  + E   +LP G  T++G  G +LSGGQR RI+LARA+Y    + +
Sbjct: 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477

Query: 71  LDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKE 130
           LD+P S +D   G+    + I                     AL  RG            
Sbjct: 478 LDEPNSNLDE-EGEQALANAIK--------------------ALKARGI----------- 505

Query: 131 KTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
            TV++ITH+   L  VD +++L+ G +  FG   ++LA
Sbjct: 506 -TVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 34/159 (21%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
            R +     ++   +LP G  T +G+ GV LSGGQR R+++ARA+ K A + +LD+  SA
Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           +D    +                               V+ AL  +    ++ +T ++I 
Sbjct: 500 LDNESERL------------------------------VQAALERL----MQGRTTLVIA 525

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
           H++  +   D +++++ G +   GT  +LLA    + QL
Sbjct: 526 HRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQL 564

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 69.0 bits (169), Expect = 9e-14
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 37/163 (22%)

Query: 11  GHPDPNSRRVVKVC--ALKEDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G PD     V      A   +F + LP G  T +G++GV+LSGGQR RI++ARA+ K A 
Sbjct: 437 GRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + LLD+  SA+DA                               S   V+ AL     + 
Sbjct: 497 ILLLDEATSALDAE------------------------------SEQLVQQALE----TL 522

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
           +K +T ++I H++  +   D ++++++G + A GT  +L+A G
Sbjct: 523 MKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 35/141 (24%)

Query: 29  DFA-QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
           +F  + P G    +G++G SLSGGQR  ++LARA+ +   + LLD+P SA+D        
Sbjct: 582 EFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN------- 634

Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                                   S    +  L      +L  KT++L+TH+   L  VD
Sbjct: 635 -----------------------RSEERFKDRLK----RWLAGKTLVLVTHRTSLLDLVD 667

Query: 148 HVMLLEKGSVEAFGTTTQLLA 168
            +++++ G + A G   Q+L 
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 64.5 bits (158), Expect = 6e-13
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 37/154 (24%)

Query: 11  GHPDPNSRRVVKVCALK--EDFAQL-PSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G P  +  R+++   L    DF    P+G    +G++G  LSGGQR  ++LARA+     
Sbjct: 101 GAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + LLD+P SA+D +  + L E                               L       
Sbjct: 161 ILLLDEPTSAMDMNSEERLKE------------------------------RLR----QL 186

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG 161
           L +KT+++ITH+   L  VD +++++ G + A G
Sbjct: 187 LGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 37/171 (21%)

Query: 11  GHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
             P  +  RV++   L    DF ++LP G  T+VG++G  LSGGQR RI++ARA+     
Sbjct: 99  ADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + + D+  SA+D      +    +  +H                                
Sbjct: 159 ILIFDEATSALDYESEHAI----MRNMH------------------------------DI 184

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD 178
              +TV++I H++  + + D ++++EKG +   G+  +LLA    +  L  
Sbjct: 185 CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 10  PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVY 69
           P   D   R  ++   L E  A LP G  T +G+ G  LSGGQ  R++LARA  + A + 
Sbjct: 421 PDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLL 480

Query: 70  LLDDPLSAVDAHVGKHLFE 88
           LLD+P + +DA     + E
Sbjct: 481 LLDEPTAHLDAETEAEVLE 499

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 34/167 (20%)

Query: 10  PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVY 69
           PG P  +     K+    +  ++LP G  T VG+KG +LSGGQR RI++ARA+     + 
Sbjct: 556 PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615

Query: 70  LLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK 129
           + D+  SA+D      +  +    +                                  +
Sbjct: 616 IFDEATSALDYESEALIMRN----MR------------------------------EICR 641

Query: 130 EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
            +TV++I H++  +   D +++LEKG +   G   +LLA    + +L
Sbjct: 642 GRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARL 688

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 35/149 (23%)

Query: 29  DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
           DF  ++ +G  T++G+ GV LSGGQR RI++ARA+ + + + +LD+  SA+D        
Sbjct: 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE------ 514

Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                                   S   ++ AL  ++    K +T ++I H++  +   D
Sbjct: 515 ------------------------SERAIQAALDELQ----KNRTSLVIAHRLSTIEKAD 546

Query: 148 HVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
            ++++E G +   GT  +LLA    + QL
Sbjct: 547 EILVVEDGEIVERGTHAELLAQNGVYAQL 575

Length = 582

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 34/146 (23%)

Query: 34  PSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93
           P G  T+VG++G  LSGG+R R+++ARA+ K   + +LD+  SA+D              
Sbjct: 458 PDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET----------- 506

Query: 94  LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153
                   +++           V+ AL  +     K +T  +I H++  + + D +++ +
Sbjct: 507 --------EAK-----------VKAALDELM----KGRTTFIIAHRLSTVRNADRILVFD 543

Query: 154 KGSVEAFGTTTQLLASGLDFTQLLDA 179
            G V   G+  +L+A G  F  LL A
Sbjct: 544 NGRVVESGSFDELVARGGRFAALLRA 569

Length = 588

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 34/144 (23%)

Query: 19  RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
           + ++   LKE    LP G  T+V + G +LS GQR  + LARA+ +++ + +LD+  ++V
Sbjct: 111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASV 170

Query: 79  DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
           D      + +                                  +R +F K+ TV+ I H
Sbjct: 171 DPETDALIQK---------------------------------TIREAF-KDCTVLTIAH 196

Query: 139 QIQYLTHVDHVMLLEKGSVEAFGT 162
           ++  +   D +++L+KG V  F +
Sbjct: 197 RLDTIIDSDRILVLDKGRVVEFDS 220

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 37/163 (22%)

Query: 11  GHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G P+     V++        DF  +LP+G  T++G+ G +LS G+R  +++ARA+ +   
Sbjct: 100 GRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + +LD+  S +D                      +             ++ AL  +    
Sbjct: 160 ILILDEATSNID-------------------TETEKL-----------IQEALEKLM--- 186

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
            K +T ++I H++  + + D +++L+ G +   GT  +LLA  
Sbjct: 187 -KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 59.1 bits (144), Expect = 6e-11
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 35/116 (30%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQ+ R+ LARA+ +  D+ LLD+P + VD                           
Sbjct: 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK------------------------- 166

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG 161
                          L+R    +  T++++TH +  +  + D V+LL +  V A G
Sbjct: 167 --------TQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 35/161 (21%)

Query: 19  RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
              ++  +K+D   +P G +T + ++G S+SGGQ+ RI+LARA+   + V +LD+  S +
Sbjct: 583 AACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL 642

Query: 79  DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
           D    K +  + +                                    L++KT++ + H
Sbjct: 643 DTITEKKIVNNLL-----------------------------------NLQDKTIIFVAH 667

Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179
           ++      D +++L+ G +   G+  +LL     +  L+  
Sbjct: 668 RLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIHN 708

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 38/148 (25%)

Query: 32  QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
             P G  T +G+ G  LSGG+R R++LARA+   A ++LLD+P   +D           I
Sbjct: 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDP----------I 508

Query: 92  TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF--LKEKTVMLITHQIQYLTHVDHV 149
           T                             ++   F   + KT++++TH+++ L  +D +
Sbjct: 509 T--------------------------ERQVLALLFEHAEGKTLLMVTHRLRGLERMDRI 542

Query: 150 MLLEKGSVEAFGTTTQLLASGLDFTQLL 177
           ++L+ G +   GT  +LLA+   + +L 
Sbjct: 543 IVLDNGKIIEEGTHAELLANNGRYKRLY 570

Length = 573

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 34/141 (24%)

Query: 39  TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGV 98
           TLVG++G  LSGG+R R+++ARA+ K A + +LD+  SA+D                   
Sbjct: 463 TLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE----------------- 505

Query: 99  PRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVE 158
                        +   V+ A+  +R    K +T  +I H++  + + D V+ L++G + 
Sbjct: 506 -------------TEARVKNAIDALR----KNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548

Query: 159 AFGTTTQLLASGLDFTQLLDA 179
             G+  +L+     F +LL  
Sbjct: 549 EKGSFQELIQKDGRFYKLLRR 569

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 34/125 (27%)

Query: 37  DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
           D TL  + G   SGG+R R++LAR + + A + LLD+P   +D                 
Sbjct: 88  DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD----------------- 130

Query: 97  GVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS 156
             P  + +     F                 LK+KT++ ITH +  + H+D ++ LE G 
Sbjct: 131 --PITERQLLSLIF---------------EVLKDKTLIWITHHLTGIEHMDKILFLENGK 173

Query: 157 VEAFG 161
           +   G
Sbjct: 174 IIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 35/122 (28%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQ+ R+ LARA+ +  D+ LLD+P + VD    K +++                  
Sbjct: 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD------------------ 180

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQ 165
                          L++    + KTV+++TH +  +  + D V+ L +  + A G   +
Sbjct: 181 ---------------LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI-ASGPPEE 224

Query: 166 LL 167
           +L
Sbjct: 225 VL 226

Length = 254

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 32/120 (26%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG + RI++ARA+    DV LLD+PLSA+DA++  ++ E+ I  LH  +P        
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE-IAALHEELP-------- 188

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTTTQL 166
                                 E T++ +TH Q   LT  D   +++ G + A G    L
Sbjct: 189 ----------------------ELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 34/126 (26%)

Query: 32  QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
           +L SG  T VG+KG  LSGGQ+ R+++ARA+ +   V +LD+  SA+DA           
Sbjct: 135 ELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE---------- 184

Query: 92  TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVML 151
                               S   V+ AL      + + +TV++I H++  +   D +++
Sbjct: 185 --------------------SEQQVQQALY----DWPERRTVLVIAHRLSTVERADQILV 220

Query: 152 LEKGSV 157
           L+ G +
Sbjct: 221 LDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 34/109 (31%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQR R++LARA+    D+ LLD+P S +D    +    + +  L             
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA-SRERLLELLRELA------------ 127

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKG 155
                                + +TV+++TH  +      D V++L+ G
Sbjct: 128 --------------------EEGRTVIIVTHDPELAELAADRVIVLKDG 156

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 57.5 bits (140), Expect = 6e-10
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 34/135 (25%)

Query: 42  GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRF 101
           G+ G  LSGG++ R+ +ARA+   A + LLD+P   +DA   + +               
Sbjct: 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI--------------- 514

Query: 102 DSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG 161
                             L L+     + KTV++ITH++  L   D + +++ G +   G
Sbjct: 515 ------------------LELLAE-HAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555

Query: 162 TTTQLLASGLDFTQL 176
           T  +LLA    + QL
Sbjct: 556 THQELLAQQGRYYQL 570

Length = 574

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 40/135 (29%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQR RI++ARA+     + +LD+P SA+D  V   +                     
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI--------------------- 180

Query: 108 SFFGSALGVRGALSLVRTSFLKEK---TVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTT 163
                       L+L+    LK++   T + I+H +  + H+ D + +++ G +   G T
Sbjct: 181 ------------LNLLLE--LKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226

Query: 164 TQLLASGL-DFTQLL 177
            +LL+     +T+ L
Sbjct: 227 EELLSHPSHPYTREL 241

Length = 252

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 26  LKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKH 85
           L +    LP G  T++G+ G  LSGG+R R++LARA+   A + LLD+P   +DA     
Sbjct: 450 LADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADE 509

Query: 86  LFED 89
           L ED
Sbjct: 510 LLED 513

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 33/120 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQR R++LARA+     V LLD+P  A+DA V K L                 RW R
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL----------------RRWLR 180

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTTTQL 166
                 L V               T + +TH Q + L   D V+++ KG +E  GT  ++
Sbjct: 181 RLH-DELHV---------------TTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 33/116 (28%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQR R++LARA+     V LLD+P  A+DA V K L                 RW R
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL----------------RRWLR 181

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGT 162
                 LGV               T + +TH Q + L   D V++L +G +E  G 
Sbjct: 182 KLH-DRLGV---------------TTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221

Length = 345

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 37/156 (23%)

Query: 18   RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
            +R  K  A+ E    LP+   T VG  G SLSGGQ+ RI++ARA+ +   + LLD+  S+
Sbjct: 1329 KRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSS 1388

Query: 78   VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
            +D++  K L E  I  +                                   +KT++ I 
Sbjct: 1389 LDSNSEK-LIEKTIVDIKDKA-------------------------------DKTIITIA 1416

Query: 138  HQIQYLTHVDHVMLLEK----GS-VEAFGTTTQLLA 168
            H+I  +   D +++       GS V+A GT  +LL+
Sbjct: 1417 HRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452

Length = 1466

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 33/120 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R++LARA+     + LLD+PLSA+DA V +HL                 R   
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL-----------------RTEI 177

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTTTQL 166
                 LGV               T +++TH Q + L+  D ++++  G +E  GT  ++
Sbjct: 178 RQLQRRLGV---------------TTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 33/156 (21%)

Query: 42  GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRF 101
             K  +LSGG + R+S+A A+    ++ +LD+P S +D    +    + +  L       
Sbjct: 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLREL------- 182

Query: 102 DSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAF 160
                                   +     T++L TH ++    + D V++L  G + A 
Sbjct: 183 ------------------------AKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218

Query: 161 GTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASG 196
           GT  +L         +   PE  + AE         
Sbjct: 219 GTPEELKEKFGGKGVIELEPERLELAELLEGLKLVK 254

Length = 293

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 35/123 (28%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGG+R R+ +ARA+ +   + LLD+P S +D                           
Sbjct: 138 ELSGGERQRVLIARALAQETPILLLDEPTSHLD--------------------------- 170

Query: 107 RSFFGSALGVRGALSLVRT-SFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTT 164
                  + V   L L+R  +  K  TV+++ H +     + DH++LL+ G + A GT  
Sbjct: 171 ---IAHQIEV---LELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPE 224

Query: 165 QLL 167
           ++L
Sbjct: 225 EVL 227

Length = 258

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 33/115 (28%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R++LARA+ +   + LLD+PLSA+DA + + L                     
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL--------------------- 169

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFG 161
                    R  L  ++       T + +TH Q + L   D + ++ +G +   G
Sbjct: 170 ---------REELKELQREL--GITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 37/129 (28%)

Query: 41  VGDK--GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGV 98
           V D+   + LSGGQ+ R+ LARA+    +V LLD+P SA+D  +     E+ I  L    
Sbjct: 133 VKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP-ISTAKIEELIAELK--- 188

Query: 99  PRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSV 157
                                         KE T++++TH +Q    V D    L  G +
Sbjct: 189 ------------------------------KEYTIVIVTHNMQQAARVADRTAFLLNGRL 218

Query: 158 EAFGTTTQL 166
             FG T Q+
Sbjct: 219 VEFGPTEQI 227

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 37/111 (33%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG R R+++ARA+  R  + LLD+P  A+DA   + L ++                  
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE------------------ 172

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ---YLTHVDHVMLLEKG 155
                         L+R      KTV+L+TH +    YL   D V++L   
Sbjct: 173 --------------LLRLWEETRKTVLLVTHDVDEAVYLA--DRVVVLSNR 207

Length = 248

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 34/152 (22%)

Query: 19  RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
              +   + +    LP G  T VG++G+ LSGG++ R+++AR + K   + +LD+  SA+
Sbjct: 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSAL 430

Query: 79  DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
           D H  + +                              + AL  V       +T ++I H
Sbjct: 431 DTHTEQAI------------------------------QAALREVS----AGRTTLVIAH 456

Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
           ++  +   D +++L+ G +   GT  +LLA+G
Sbjct: 457 RLSTIIDADEIIVLDNGRIVERGTHEELLAAG 488

Length = 497

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
           LSGGQ+ R++LARA+     V LLD+PLSA+DA + + +
Sbjct: 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175

Length = 352

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           LSGGQR R++L RA+ +   V+L+D+PLS +DA +
Sbjct: 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 35/126 (27%)

Query: 44  KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS 103
           K + LSGGQR R++LARA+ ++  V+LLD+PLS +DA                       
Sbjct: 130 KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK---------------------L 168

Query: 104 RWG-RSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFG 161
           R   RS         G  ++             +TH Q++ +T  D ++++  G ++  G
Sbjct: 169 RVLMRSEIKKLHERLGTTTIY------------VTHDQVEAMTLADRIVVMNDGRIQQVG 216

Query: 162 TTTQLL 167
           T  +L 
Sbjct: 217 TPLELY 222

Length = 338

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 34/122 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+++ARA+    +V L D+P SA+D  +                         
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPEL------------------------- 187

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
              G  L V   L+       + +T++++TH++ +   V  HV+ L +G +E  G   Q+
Sbjct: 188 --VGEVLKVMQDLA------EEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239

Query: 167 LA 168
             
Sbjct: 240 FG 241

Length = 256

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 14/30 (46%), Positives = 24/30 (80%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLS 76
           +LSGGQ+ R+++ARA+ K+  + LLD+P +
Sbjct: 90  TLSGGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 34/125 (27%)

Query: 46  VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105
           V LSGGQ+ R+S+ARA+    +V L D+P SA+D  +                       
Sbjct: 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL----------------------- 187

Query: 106 GRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
                     V   L +++    + KT++++TH++ +  HV  HV+ L +G +E  G   
Sbjct: 188 ----------VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237

Query: 165 QLLAS 169
           QL  +
Sbjct: 238 QLFGN 242

Length = 257

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 50.1 bits (121), Expect = 7e-08
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 35/117 (29%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGG+R R+ LARA+ +   + LLD+P S +D                           
Sbjct: 97  ELSGGERQRVLLARALAQEPPILLLDEPTSHLD--------------------------- 129

Query: 107 RSFFGSALGVRGALSLVRT-SFLKEKTVMLITHQI-QYLTHVDHVMLLEKGSVEAFG 161
                  + +   L L+R  +  + KTV+++ H +     + D V+LL+ G + A G
Sbjct: 130 ---IAHQIEL---LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 49.5 bits (119), Expect = 9e-08
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 33/110 (30%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQR R+ LARA+Y    + +LD+P S +D   G+      I                
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAI---------------- 139

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV 157
               +AL   GA            T ++I H+ + L   D +++LE G V
Sbjct: 140 ----AALKAAGA------------TRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 33/116 (28%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+++ARA+     V LLD+PL A+D  + K +  + +  L             
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE-LKRLQK----------- 178

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGT 162
                 LG+               T + +TH Q + LT  D + ++ KG ++  GT
Sbjct: 179 -----ELGI---------------TFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 35/110 (31%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R++LARA+    DV LLD+P SA+D                            
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALD---------------------------- 132

Query: 108 SFFGSALGVRGALSLVRTSFLK-EKTVMLITHQIQYLTHV-DHVMLLEKG 155
                 +  R   +L+++   +   TV+L+TH +     + D V++L  G
Sbjct: 133 -----PITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 44/161 (27%)

Query: 20  VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
             ++  L ED   +P G  T++ + G +LSGGQR R+ +ARA+ ++  + L D+  SA+D
Sbjct: 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620

Query: 80  ----AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVML 135
               A V + L                           L V               T ++
Sbjct: 621 NRTQAIVSESL-------------------------ERLKV---------------TRIV 640

Query: 136 ITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
           I H++  + + D + +L+ G V   GT  +L+A    F QL
Sbjct: 641 IAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQL 681

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 33/123 (26%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+ +ARA+     + L+D+P  A+D    K L E+ I  L   +         
Sbjct: 136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE-IKELQKEL--------- 185

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                                  KT++ +TH I     + D + +++ G +  + T  ++
Sbjct: 186 ----------------------GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223

Query: 167 LAS 169
           LA+
Sbjct: 224 LAN 226

Length = 309

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 33/123 (26%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+ +ARA+     + L+D+P  A+D      L E+    L             
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR-LQ------------ 182

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                 LG               KT++ +TH I     + D + +++ G +   GT  ++
Sbjct: 183 ----QELG---------------KTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223

Query: 167 LAS 169
           L S
Sbjct: 224 LRS 226

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQ+ R+++ARAV  +  V LLD+ LSA+D
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176

Length = 375

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 26  LKEDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           L  DF + LP    TLVG     LSGGQ+ RIS+ARA+ +   + +LD+  S++D
Sbjct: 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611

Length = 1466

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 39/123 (31%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQR R++LARA+     V LLD+P  A+DA V K L                  W R
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL----------------RSWLR 174

Query: 108 SFFGSALGVRGALSLVRTSFLKEK---TVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTT 163
                               L ++   T + +TH Q + +   D ++++  G +E  G+ 
Sbjct: 175 K-------------------LHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSP 215

Query: 164 TQL 166
            ++
Sbjct: 216 DEV 218

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 18/32 (56%), Positives = 26/32 (81%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQ+ R++LARA+  +  + LLD+PLSA+D
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALD 132

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 37/126 (29%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD 102
           D  + LSGGQ+ R+ +ARA+    +V LLD+P SA+D  +     E+ I           
Sbjct: 140 DSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP-IATGKIEELIQE--------- 189

Query: 103 SRWGRSFFGSALGVRGALSLVRTSFLKEK-TVMLITHQIQYLTHV-DHVMLLEKGSVEAF 160
                                    LK+K T++++TH +Q    + D       G +  +
Sbjct: 190 -------------------------LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224

Query: 161 GTTTQL 166
           G T Q+
Sbjct: 225 GPTEQI 230

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
           +KG +LSGGQ+ R+ +ARA+  + DV L+D+P SA+D    + + E C+
Sbjct: 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205

Length = 274

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 34/113 (30%)

Query: 46  VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105
           + LSGG + R++LA+A+    ++ +LD+P S +D    +  F + +              
Sbjct: 94  LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDP-ESRREFWELL-------------- 138

Query: 106 GRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSV 157
                           L +    + KT++L +H ++    + D V +L  G +
Sbjct: 139 --------------RELKK----EGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 4/43 (9%)

Query: 41  VGDK----GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           V DK    G SLSGGQ+ R+ +AR +  R +V LLD+P SA+D
Sbjct: 146 VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188

Length = 260

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 41/138 (29%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+++A AV  R  + +LD+  S +D                            
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP--------------------------- 173

Query: 108 SFFGSALGVRGALSLVRT-SFLKEK---TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTT 163
                     G L L++T   +++    TV+ ITH +  +   D V++++ G VE+  T 
Sbjct: 174 ---------EGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTP 224

Query: 164 TQLLASGLDFTQL-LDAP 180
            +L + G D  QL LD P
Sbjct: 225 RELFSRGNDLLQLGLDIP 242

Length = 279

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 16/35 (45%), Positives = 27/35 (77%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           LSGG++ R++LARA+  + ++ LLD+P SA+D  +
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.7 bits (113), Expect = 9e-07
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 35/139 (25%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104
           G+SLSGGQ+ R+ +ARA+    +V LLD+P SA+D    + + E                
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE---------------- 190

Query: 105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTT 164
                             +     K+ T+ L+TH +Q    V          +     T 
Sbjct: 191 ------------------LMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTG 232

Query: 165 QLLASGLDFTQLLDAPEEE 183
            L+  G    Q+   P E+
Sbjct: 233 YLVEMG-PTAQIFQNPREQ 250

Length = 261

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 33/122 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+++ARA+     + L D+  SA+D    + + E  +  ++            
Sbjct: 142 LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE-LLKDIN------------ 188

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                 LG+               T++LITH+++ +  + D V +L++G +   GT +++
Sbjct: 189 ----RELGL---------------TIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229

Query: 167 LA 168
            A
Sbjct: 230 FA 231

Length = 339

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 20/34 (58%), Positives = 25/34 (73%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
           LSGG R R++LARA+    DV LLD+P SA+DA 
Sbjct: 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 33/123 (26%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG R R++LARA+    ++  LD+P S +D  +   + ++ I  L+            
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDP-ISAGVIDELIRELN------------ 192

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQL 166
                ALG+               TV+++TH +  L T  D V +L  G V A GT  +L
Sbjct: 193 ----DALGL---------------TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233

Query: 167 LAS 169
           LAS
Sbjct: 234 LAS 236

Length = 263

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 35/125 (28%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD 102
              + LSGGQ+ R+ +ARA+  + +V L+D+P SA+D  +     E+ IT L        
Sbjct: 145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP-ISTLKIEELITELK------- 196

Query: 103 SRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161
                                     K+ T++++TH +Q    V D+      G +  FG
Sbjct: 197 --------------------------KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230

Query: 162 TTTQL 166
            T ++
Sbjct: 231 PTDKI 235

Length = 253

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 34/110 (30%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           +LSGGQ+ R+++A  +    D+ LLD+P + +D    + L E                  
Sbjct: 134 TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE------------------ 175

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKG 155
                          L++    + KT++++TH +  L    D V++LE G
Sbjct: 176 ---------------LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 33/123 (26%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG + R++LARA+    ++ L D+P + +D  +   + +D I  L             
Sbjct: 137 LSGGMKKRVALARALALDPELLLYDEPTAGLDP-IASGVIDDLIRSLK------------ 183

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                 LG+               T +++TH +     + D + +L  G + A GT  +L
Sbjct: 184 ----KELGL---------------TSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224

Query: 167 LAS 169
            AS
Sbjct: 225 RAS 227

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 34/157 (21%)

Query: 12   HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLL 71
            H D +    ++   +K+   + P G    V + G + S GQR  +SLARA+ +R+ + +L
Sbjct: 1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVL 1395

Query: 72   DDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131
            D+  ++VD                    R DS   R+              +R  F K  
Sbjct: 1396 DEATASVDV-------------------RTDSLIQRT--------------IREEF-KSC 1421

Query: 132  TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
            T+++I H++  +   D +++L  G V  + +  +LL+
Sbjct: 1422 TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458

Length = 1495

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 13  PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLD 72
           PD +  R  K  A+ +     P G    + + G +LSGGQR R+ +ARA+ +   + +LD
Sbjct: 581 PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD 640

Query: 73  DPLSAVDAHVGK 84
           +  SA+D    K
Sbjct: 641 EATSALDPETEK 652

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 39/125 (31%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+++A  +    ++ LLD+P + +D                            
Sbjct: 139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP--------------------------- 171

Query: 108 SFFGSALGVRGALSLVRTSFLKE---KTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTT 163
                  G R  L L++   LKE   KT++++TH ++ +  + D V++L+ G + A G  
Sbjct: 172 ------KGRRELLELLKK--LKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDP 223

Query: 164 TQLLA 168
            ++  
Sbjct: 224 AEIFN 228

Length = 235

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 35/155 (22%)

Query: 26   LKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKH 85
            LK   + LP        + G +LS GQR  + LARA+ ++  + +LD+  +AVD      
Sbjct: 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET--- 1456

Query: 86   LFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH 145
              ++ I                             S +RT F ++ TV+ I H++  +  
Sbjct: 1457 --DNLIQ----------------------------STIRTQF-EDCTVLTIAHRLNTIMD 1485

Query: 146  VDHVMLLEKGSVEAFGTTTQLLAS-GLDFTQLLDA 179
               V++L+KG V  FG  + LL   G+ ++   DA
Sbjct: 1486 YTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 35/125 (28%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           +LSGG++ R+++ RA+    ++ L+D+PL+++D                  +PR      
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLD------------------LPR------ 163

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVML-ITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
                     R  L  +     +    +L ++H +  +  + D V++LE G V+A G   
Sbjct: 164 ---------KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLE 214

Query: 165 QLLAS 169
           ++  S
Sbjct: 215 EVWGS 219

Length = 352

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           LSGGQR RI +ARA+     + + D+P+SA+D  V
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144

Length = 268

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 33/125 (26%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGG++ R+++ RA+     + L+D+PL+A+D                   PR      
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD------------------DPRKYE--- 169

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
                    +   L  +   F     ++ ++H +Q +  + D V++LE G V A G   +
Sbjct: 170 ---------ILPYLERLHAEF--GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE 218

Query: 166 LLASG 170
           + AS 
Sbjct: 219 VWASP 223

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 20/39 (51%), Positives = 27/39 (69%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
           LSGGQ+ R++LARA+     + LLD+P  A+DA V K L
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175

Length = 353

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 37/125 (29%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQR R++LAR + +   + LLD+P SA+D                           
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDP-------------------------- 162

Query: 107 RSFFGSALGVR-GALSLVRTSFLKEK-TVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTT 163
                    +R   L+LV     + K T++++TH  +    + D V+ L+ G + A G+T
Sbjct: 163 --------ALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGST 214

Query: 164 TQLLA 168
            +LL+
Sbjct: 215 QELLS 219

Length = 231

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 35/125 (28%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD 102
           D  +SLSGGQ+ R+ +AR +    +V L+D+P SA+D  +     ED I  L        
Sbjct: 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLIEDLK------- 196

Query: 103 SRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161
                                     KE TV+++TH +Q    V D+   +  G +  F 
Sbjct: 197 --------------------------KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230

Query: 162 TTTQL 166
            TTQ+
Sbjct: 231 KTTQI 235

Length = 253

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 43.6 bits (104), Expect = 8e-06
 Identities = 11/27 (40%), Positives = 21/27 (77%)

Query: 48 LSGGQRARISLARAVYKRADVYLLDDP 74
          LSGG++ R++LA+ + +  ++ LLD+P
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEP 97

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 35/126 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+ +AR +    ++ LLD+P SA+D      + ED I  L             
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI-EDLIQEL------------- 228

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                           R S+    T+M++TH +Q  + V D+ M   +G +     T QL
Sbjct: 229 ----------------RGSY----TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268

Query: 167 LASGLD 172
             +  D
Sbjct: 269 FTNPKD 274

Length = 286

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 35/136 (25%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           +LSGGQ+ R+++A  +     V +LD+  S +D    ++L                    
Sbjct: 142 ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL-------------------- 181

Query: 107 RSFFGSALGVRGALSLVR-TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQ 165
                        L LVR        T++ ITH +      DHV+++ KG+V   GT T+
Sbjct: 182 -------------LDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTE 228

Query: 166 LLASGLDFTQL-LDAP 180
           +     + T++ LD P
Sbjct: 229 IFDHAEELTRIGLDLP 244

Length = 269

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 4/43 (9%)

Query: 41  VGDK----GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           V DK    G+SLSGGQ+ R+ +ARA+  + +V L+D+P SA+D
Sbjct: 141 VKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183

Length = 264

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 33/116 (28%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG++ R+++ARA+     + LLD+P SA+D    + L E+              +  +
Sbjct: 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL------------KKIRK 177

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGT 162
            F                      TV+ +TH   +     D V ++  G +   G 
Sbjct: 178 EF--------------------GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 18/32 (56%), Positives = 26/32 (81%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQR R++LAR++ KR  + LLD+P+ A+D
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181

Length = 377

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 12  HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLL 71
                  R  K+  L E+F             K  SLSGG+R R+ +ARA+       LL
Sbjct: 103 RGLSKKEREEKLEELLEEFHITHLRKS-----KASSLSGGERRRVEIARALATNPKFLLL 157

Query: 72  DDPLSAVD 79
           D+P + VD
Sbjct: 158 DEPFAGVD 165

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           + G SLSGGQ+ R+ +AR +    +V L+D+P SA+D
Sbjct: 150 ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186

Length = 269

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 19/34 (55%), Positives = 27/34 (79%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           +LSGGQ+ R++LARA+  R  + LLD+PL A+DA
Sbjct: 133 ALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166

Length = 257

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           +LSGGQR R+++ R +     V+LLD+PLS +DA
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166

Length = 369

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
           LSGGQ+ R+++ARA+     + L D+P   +D+   K + E
Sbjct: 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183

Length = 226

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 37  DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           DR  + + G  LSGGQ+ R+ +ARA+    +V L+D+P SA+D
Sbjct: 155 DR--LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195

Length = 267

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 34/137 (24%)

Query: 33  LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92
           LP G  T +G++G +LS GQ+  ++LAR + +   + +LD+  + +D+            
Sbjct: 462 LPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS------------ 509

Query: 93  GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152
                             G+   ++ AL+ VR    +  T+++I H++  +   D +++L
Sbjct: 510 ------------------GTEQAIQQALAAVR----EHTTLVVIAHRLSTIVEADTILVL 547

Query: 153 EKGSVEAFGTTTQLLAS 169
            +G     GT  QLLA+
Sbjct: 548 HRGQAVEQGTHQQLLAA 564

Length = 592

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 44  KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           K  SLSGG+R R+ +ARA+       LLD+P + VD
Sbjct: 136 KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171

Length = 243

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 33/123 (26%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQ+ R+ +ARA+     V L D+  SA+D           I  L   + R      
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPET-----TQSILALLRDINR------ 188

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
                  LG+               T++LITH+++ +  + D V ++EKG V   GT  +
Sbjct: 189 ------ELGL---------------TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227

Query: 166 LLA 168
           + A
Sbjct: 228 VFA 230

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 39/138 (28%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQ+ R+++A  +  + D+ +LD+  S +D                   PR     G
Sbjct: 140 RLSGGQKQRVAIAGVLALQPDIIILDEATSMLD-------------------PR-----G 175

Query: 107 RSFFGSALGVRGALSLVRTSFLKEK---TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTT 163
           R         R  L  VR   LKE+   TV+ ITH +      D V+++ KG +   GT 
Sbjct: 176 R---------REVLETVRQ--LKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224

Query: 164 TQLLASGLDFTQL-LDAP 180
            ++  SG    ++ LD P
Sbjct: 225 EEIFKSGHMLQEIGLDVP 242

Length = 279

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 35/123 (28%)

Query: 46  VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105
           + LSGGQ+ R+ +AR +  + DV L+D+P SA+D  +     ED +  L           
Sbjct: 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIEDLMVELK---------- 194

Query: 106 GRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
                                  KE T++++TH +Q  + V D+      G +  F  T 
Sbjct: 195 -----------------------KEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231

Query: 165 QLL 167
           ++ 
Sbjct: 232 KIF 234

Length = 251

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 16/35 (45%), Positives = 27/35 (77%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            ++LSGGQ+ R+ +ARA+  + D+ L+D+P SA+D
Sbjct: 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195

Length = 267

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 26/32 (81%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQ+ R+++ARA+ ++  + L D+P++++D
Sbjct: 145 LSGGQQQRVAIARALMQQPKLILADEPVASLD 176

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 43/145 (29%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG R R+ +A A+  +  + + D+P +A+D      +                     
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQI--------------------- 193

Query: 108 SFFGSALGVRGALSLVRTSFLKEK--TVMLITHQ---IQYLTHVDHVMLLEKGSVEAFGT 162
                       L L++    +E    V+ ITH    +  L   D V+++ KG +   G 
Sbjct: 194 ------------LDLLK-DLQRELGMAVLFITHDLGVVAELA--DRVVVMYKGEIVETGP 238

Query: 163 TTQLLASGL-DFTQ-LLDAPEEEDK 185
           T ++L++    +T+ LL A      
Sbjct: 239 TEEILSNPQHPYTRGLLAAVPRLGD 263

Length = 539

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 46  VSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           +SLSGGQ+ R+ +ARA+    DV L+D+P SA+D
Sbjct: 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187

Length = 259

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           LSGGQR R+++ARA+     + + D+P SA+D  V
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 37/132 (28%)

Query: 36  GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLH 95
           GDR  + D    LSGGQ+ R+ +ARA+  +  + L+D+P SA+D  V  ++ E+ I  L 
Sbjct: 140 GDR--LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNVIENLIQELK 196

Query: 96  TGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEK 154
                                            K  T++++TH ++    V D V   + 
Sbjct: 197 ---------------------------------KNFTIIVVTHSMKQAKKVSDRVAFFQS 223

Query: 155 GSVEAFGTTTQL 166
           G +  + TT ++
Sbjct: 224 GRIVEYNTTQEI 235

Length = 251

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 46  VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
             LSGG R R+ +ARA+     + LLD+P  A+DA   + + E
Sbjct: 131 WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQE 173

Length = 259

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            LSGGQ+ R+++ARA+     V L D+P SA+D
Sbjct: 135 QLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDP 74
           SLSGG R R++LARA+ +  D+ LLD+P
Sbjct: 153 SLSGGWRRRVALARALLEEPDLLLLDEP 180

Length = 530

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 40/138 (28%)

Query: 28  EDFAQLPSGDRTLVGDKGV-SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
            +FA+L  GD     D+ V + S G  AR++ + A +   D+ LLD+ L+  DA      
Sbjct: 132 IEFAEL--GD---FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA------ 180

Query: 87  FEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV 146
                         F                  L  +     K KT++L++H +  +   
Sbjct: 181 -------------AF--------------QEKCLERLNELVEKNKTIVLVSHDLGAIKQY 213

Query: 147 -DHVMLLEKGSVEAFGTT 163
            D  + LE G +   G+ 
Sbjct: 214 CDRAIWLEHGQIRMEGSP 231

Length = 249

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 35/123 (28%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+++ARA+  +  V L+D+P S +D  V     E  IT L             
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIEKLITELK------------ 200

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                                 E  +++++H  Q +  V D+V  L  G +  +G++ ++
Sbjct: 201 ---------------------NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239

Query: 167 LAS 169
             S
Sbjct: 240 FTS 242

Length = 257

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            LSGGQR R++LAR + +   + LLD+P SA+D
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            LSGGQ+ R+ +ARA+    +V L+D+P SA+D
Sbjct: 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178

Length = 250

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 39/127 (30%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           SLSGG++ R+++ RA+    ++ L+D+PL+++D                  +PR      
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD------------------LPR------ 163

Query: 107 RSFFGSALGVRGALS-LVRTSFLKE-KTVML-ITHQIQYLTHV-DHVMLLEKGSVEAFGT 162
                     R  L  L R +  +E    +L ++H +  +  + D V++LE+G V+AFG 
Sbjct: 164 ---------KRELLPYLERLA--REINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212

Query: 163 TTQLLAS 169
             ++ AS
Sbjct: 213 LEEVWAS 219

Length = 352

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 52/137 (37%)

Query: 41   VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100
            V + G + S GQR  +SLARA+ +R+ + +LD+  +AVD                     
Sbjct: 1368 VSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD--------------------- 1406

Query: 101  FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTV--------ML-ITHQIQYLTHVDHVML 151
                                  VRT  L +KT+        ML I H++  +   D +++
Sbjct: 1407 ----------------------VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILV 1444

Query: 152  LEKGSVEAFGTTTQLLA 168
            L+ G V  F T   LL+
Sbjct: 1445 LDAGRVVEFDTPENLLS 1461

Length = 1622

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 34/142 (23%)

Query: 28  EDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
           E  A+L   +R    DK   L+GG R R+ +ARA+  R  + LLD+P   +D        
Sbjct: 115 ELLARLGLAERA--DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDP------- 165

Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                          SR        A       +L R   L   +V+  TH +  +   D
Sbjct: 166 --------------ASR--------AAITAHVRALARDQGL---SVLWATHLVDEIEADD 200

Query: 148 HVMLLEKGSVEAFGTTTQLLAS 169
            +++L +G V A G   +L  +
Sbjct: 201 RLVVLHRGRVLADGAAAELRGA 222

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94
           G+ LSGGQ+ R+ +ARA+    +V L+D+P SA+D  V     ED I  L
Sbjct: 178 GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDP-VATSKIEDLIEEL 226

Length = 285

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           G  LSGGQ+ R+ +ARA+    DV L+D+P SA+D
Sbjct: 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180

Length = 258

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 12/28 (42%), Positives = 21/28 (75%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDP 74
            LSGG++AR+ LA+ + +  ++ LLD+P
Sbjct: 439 VLSGGEKARLLLAKLLLQPPNLLLLDEP 466

Length = 530

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQR R++LAR + +   + LLD+P SA+D
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161

Length = 232

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGK 84
           LSGGQ+ R+S+ARA+     V L D+P  A+D+H G+
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181

Length = 648

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 35/125 (28%)

Query: 46  VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105
           +SLSGGQ+ R+ +AR +  +  V LLD+P SA+D  +     E+ IT L           
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP-ISNAKIEELITELK---------- 211

Query: 106 GRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
                                  +E +++++TH +Q    V D       G +  +  T 
Sbjct: 212 -----------------------EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248

Query: 165 QLLAS 169
           Q+  S
Sbjct: 249 QIFTS 253

Length = 268

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGGQR R+ +ARA+     + LLD+P  A+DA
Sbjct: 129 LSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161

Length = 255

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 49  SGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           SGGQR RI++ARA+  + ++ LLD+P SA+D  V
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSV 461

Length = 534

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQ+ R+ LARA+ ++  V LLD+P + VD
Sbjct: 143 LSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174

Length = 272

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 17/32 (53%), Positives = 25/32 (78%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQ+ R+++ARA+  R +V L D+P SA+D
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALD 176

Length = 250

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 49  SGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           SGGQR RI++ARA+    DV + D+P+SA+D  V
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189

Length = 327

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           +    LSGGQ+ R+ +ARA+    +V LLD+P SA+D
Sbjct: 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200

Length = 272

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 42.1 bits (100), Expect = 9e-05
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGGQR R+++ RA+ +   V+L D+PLS +DA
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167

Length = 356

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 17/35 (48%), Positives = 26/35 (74%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           LSGGQR R+++ARA+     + +LD+P+SA+D  V
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464

Length = 539

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            S G + ++++ARA+     + +LD+P S +D
Sbjct: 134 FSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165

Length = 245

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           +SGGQ+ R++LARA+  +  V L D+PLS +DA
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169

Length = 351

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 34/122 (27%)

Query: 41  VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100
           V + G++LS GQR  + LARA+ KR  V +LD+  +++D                     
Sbjct: 119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT------------------ 160

Query: 101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF 160
            D+   ++              +R  F    T++ I H+++ +   D +++++ G V+ +
Sbjct: 161 -DALIQKT--------------IREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEY 204

Query: 161 GT 162
             
Sbjct: 205 DH 206

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           +  +SLSGGQ+ R+ +AR +  + DV LLD+P SA+D
Sbjct: 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180

Length = 252

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 13/32 (40%), Positives = 26/32 (81%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQ+ R+++ARA+ ++  + L D+P++++D
Sbjct: 148 LSGGQQQRVAIARALVQQPKIILADEPVASLD 179

Length = 258

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 5   LAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYK 64
             PM  G  + +    + +  L +++A     +          LSGG+  R+S+AR +  
Sbjct: 99  YGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKN----------LSGGEAQRVSIARTLAN 148

Query: 65  RADVYLLDDPLSAVD 79
             +V LLD+P SA+D
Sbjct: 149 NPEVLLLDEPTSALD 163

Length = 241

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           G  LSGGQ+ R+ +ARA+    +V LLD+P SA+D
Sbjct: 144 GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178

Length = 250

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
           LS G+R  + +ARA+ + A + +LD+P +A+     + LF+
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94
              LSGGQ+ R+ +AR +    DV L+D+P SA+D  +  H  E+ +  L
Sbjct: 143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP-IATHKIEELMEEL 191

Length = 249

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93
            LS GQ+ R++LAR     A +++LD+P +A+D   G  L    +  
Sbjct: 130 QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAA 175

Length = 209

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 35/124 (28%)

Query: 41  VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100
           +GD   +LSGGQ+ R+ +ARA+    ++ L D+P SA+D  +     E+ I+ L   V  
Sbjct: 155 LGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP-IATASIEELISDLKNKV-- 211

Query: 101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEA 159
                                          T++++TH +Q    V D+   +  G +  
Sbjct: 212 -------------------------------TILIVTHNMQQAARVSDYTAYMYMGELIE 240

Query: 160 FGTT 163
           FG T
Sbjct: 241 FGAT 244

Length = 265

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 35/117 (29%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGG+R R+S+A  +     +  LD+P S +D+                          
Sbjct: 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS-------------------------- 144

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHV-DHVMLLEKGSVEAFG 161
                SAL V   +SL+R      +T++   HQ    +  + D ++LL +G V  FG
Sbjct: 145 ----SSALQV---MSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 35/134 (26%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG+  R+++A  + K AD+YLLD+P + +D                      + R   
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDV---------------------EQR--- 151

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLE-KGSVEAFGTTTQ 165
                   +  +  + R +   EKT  ++ H I  + ++ D +++ E + SV       Q
Sbjct: 152 --------LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQ 203

Query: 166 LLASGLD-FTQLLD 178
            L SG++ F + LD
Sbjct: 204 SLRSGMNRFLKNLD 217

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 44/153 (28%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG + R+ LARA+    D+ L+D+  SA+D  +   + +D +  L   +         
Sbjct: 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSM-QDELKKLQATL--------- 179

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQI-QYLTHVDHVMLLEKGSVEAFGTTTQL 166
                                 +KT++ ITH + + +   D +++++ G +   GT  ++
Sbjct: 180 ----------------------QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217

Query: 167 LAS-----------GLDFTQLLDAPEEEDKAEN 188
           L +            +D +Q+ DA     +   
Sbjct: 218 LRNPANEYVEEFIGKVDLSQVFDAERIAQRMNT 250

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           D    LSGGQ+ R+ +AR +    DV L+D+P SA+D
Sbjct: 163 DNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199

Length = 271

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 25  ALKEDFAQLPSGDRTLVGDKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVG 83
           A  +  A+    D  L   K ++ LSGG++ RI+L R +     + LLD+  SA+D    
Sbjct: 112 AALDLLARFALPDSIL--TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES-N 168

Query: 84  KHLFEDCI 91
           K   E+ I
Sbjct: 169 KRNIEEMI 176

Length = 223

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           +LSGGQRAR++L RA+  +    LLD+P S +D 
Sbjct: 134 TLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167

Length = 213

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 9   GPGHPDPNSRRVV-KVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           GP +   N R+++ K+       A L    +  +   G +LSGGQ+ R+ +ARA+    +
Sbjct: 186 GPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPE 245

Query: 68  VYLLDDPLSAVD 79
           V L+D+P SA+D
Sbjct: 246 VLLMDEPTSALD 257

Length = 329

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           D  + LSGGQ+ R+ +AR +     + LLD+P SA+D
Sbjct: 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180

Length = 252

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           + SGGQ+ RI +ARA+  R  V LLD+P SA+D
Sbjct: 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179

Length = 251

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGG + R+ LARA+    D+ L+D+  SA+D
Sbjct: 165 LSGGMQQRVGLARALANDPDILLMDEAFSALD 196

Length = 386

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 37  DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           DR  + +  + LSGGQ+ R+ +ARA+    +V L+D+P SA+D
Sbjct: 141 DR--LHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181

Length = 253

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 14/32 (43%), Positives = 27/32 (84%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQ+ R+++ARA+ ++ D+ L D+P++++D
Sbjct: 146 LSGGQQQRVAIARALAQQPDLILADEPIASLD 177

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 40/134 (29%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104
            + LSGGQ+ R+ +ARA+  +  V L+D+P SA+D  +     E+ I  L +        
Sbjct: 148 ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP-IATMKVEELIHSLRS-------- 198

Query: 105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEK-----GSVE 158
                                    E T+ ++TH +Q  T V D            G + 
Sbjct: 199 -------------------------ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233

Query: 159 AFGTTTQLLASGLD 172
            FG TTQ+ ++ LD
Sbjct: 234 EFGVTTQIFSNPLD 247

Length = 259

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD----AHVGKHLFE 88
           D   +LSGGQR R+ +ARA+  +  + L+D+P + +D    A + + LFE
Sbjct: 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194

Length = 253

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGG+R R++LAR + +   V LLD+P +A+D
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALD 160

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
           LSGGQ+ R+++ARA+     + L D+P   +D+  GK + E
Sbjct: 141 LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
           + SGG R RI+LARA++   D+ LLD+P + +D H
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLH 378

Length = 718

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 34/120 (28%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+++A  +  + ++ + D+P + +D                   P+       
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLD-------------------PK------- 210

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                  G    + L+  +    KTV +ITH ++++  V D V++++KG +   GT  ++
Sbjct: 211 -------GEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263

Length = 320

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 41  VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           + D  + LSGGQ+ R+ +AR +    +V L+D+P SA+D
Sbjct: 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232

Length = 305

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 38/126 (30%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQ+ R+++ARA+     V L D+P SA+D  +                        
Sbjct: 136 QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL------------------------ 171

Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTT 163
                    V   L +++   L E   T++++TH++ +   V D V+ +++G +   G  
Sbjct: 172 ---------VGEVLDVMKD--LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220

Query: 164 TQLLAS 169
            +   +
Sbjct: 221 EEFFDN 226

Length = 240

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 35/126 (27%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104
            +SLSGGQ+ R+ +AR +  +  + L D+P SA+D  +     ED I  L          
Sbjct: 152 ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-ISTARIEDLIMNLK--------- 201

Query: 105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTT 163
                                   K+ T++++TH +Q    + D+      G +  FG T
Sbjct: 202 ------------------------KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT 237

Query: 164 TQLLAS 169
            Q+  +
Sbjct: 238 RQIFHN 243

Length = 258

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 34/148 (22%)

Query: 21  VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           +++  LK     LP G   +V + G + S GQR    LARA  +++ + ++D+  +++D 
Sbjct: 130 LEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID- 188

Query: 81  HVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQI 140
                                            +     L  V  +   ++TV+ I H++
Sbjct: 189 ---------------------------------MATENILQKVVMTAFADRTVVTIAHRV 215

Query: 141 QYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
             +   D V++L +G +    T   LLA
Sbjct: 216 STILDADLVLVLSRGILVECDTPENLLA 243

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGG++ R++ AR +  +     LD+  SA+D
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
           LSGGQ+ R+++ARA+  R  + L D+P +A+D+  G+ + E
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 23/91 (25%), Positives = 34/91 (37%)

Query: 14  DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDD 73
            P    V+ +         L      +VG K  S SG  R R++LA A   + DV +LD+
Sbjct: 27  GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86

Query: 74  PLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104
             S +DA     L       L   +    + 
Sbjct: 87  ITSLLDAEQEALLLLLEELRLLLLLKSEKNL 117

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 15/33 (45%), Positives = 28/33 (84%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           +LSGGQ+ R+++ARA+ ++A V L D+P++++D
Sbjct: 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLD 184

Length = 262

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGG + R+ LARA    A + L+D+P SA+D
Sbjct: 165 LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           LSGGQ+ R+++ARA+     V L D+P +A+D  +
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176

Length = 242

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 12  HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVS-LSGGQRARISLARAVYKRADVYL 70
            PDP            +D  +    D  L   K ++ LSGG++ RISL R +     V L
Sbjct: 111 QPDPA--------IFLDDLERFALPDTIL--TKNIAELSGGEKQRISLIRNLQFMPKVLL 160

Query: 71  LDDPLSAVDAHVGKHLFEDCITGL 94
           LD+  SA+D    KH   + I   
Sbjct: 161 LDEITSALDES-NKHNVNEIIHRY 183

Length = 225

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGG + R+++ARA+  R  V LLD+P  A+DA
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 15/32 (46%), Positives = 25/32 (78%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGG+  R+++A A+ + AD+YLLD+P + +D
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLD 487

Length = 591

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 17/35 (48%), Positives = 26/35 (74%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
           SLSGG+R R+ LARA+ +   V LLD+P +++D +
Sbjct: 139 SLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173

Length = 402

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 38/138 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ  R+++A  +    +V +LD+P + +D   G+    +    LH            
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYKLH------------ 192

Query: 108 SFFGSALGVRGALSLVRTSFLKEK--TVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTT 164
                                KEK  T +L+TH ++      D ++++ KG+V   GT  
Sbjct: 193 ---------------------KEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231

Query: 165 QLLASGLDFTQL-LDAPE 181
           ++ A   +   + LD PE
Sbjct: 232 EIFADPDELEAIGLDLPE 249

Length = 290

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 44/153 (28%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG R R+ LARA+    D+ L+D+  SA+D  +   + ++                  
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE------------------ 206

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                         LV+     ++T++ I+H +     + D + +++ G V   GT  ++
Sbjct: 207 --------------LVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252

Query: 167 LAS-----------GLDFTQLLDAPEEEDKAEN 188
           L +           G+D +Q+  A +   +  N
Sbjct: 253 LNNPANDYVRTFFRGVDISQVFSAKDIARRTPN 285

Length = 400

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93
           LS GQ+ R++LAR +     +++LD+P +A+DA     LF + I  
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRA 172

Length = 207

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
            LS GQ+ R++LAR    RA +++LD+P +A+D 
Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 5   LAPMGPGHPDPNSRRVVKVCALKEDFAQLPSG-DRTLVGDKGVSLSGGQRARISLARAVY 63
           L P G    D    +V +   LK    Q P   D  LV D G  LS G +  + LAR+V 
Sbjct: 97  LDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLV-DGGCVLSHGHKQLMCLARSVL 154

Query: 64  KRADVYLLDDPLSAVDA-------HVGKHLFEDC 90
            +A + LLD+P + +D           K  F DC
Sbjct: 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC 188

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 29  DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
           +FA+L S     V D    LSGG + R++LARA+     + +LD+P + +D H  +HL
Sbjct: 158 EFARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHL 210

Length = 340

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 46  VSLSGGQRARISLARAVYKRADVYLLDDPLSAVD-------AHVGKHLFE 88
           + LSGG+  R+++A A+ + A  YL D+P + +D       A   + L E
Sbjct: 70  IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE 119

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGG + R+ LARA+    D+ L+D+  SA+D
Sbjct: 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALD 192

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            +SLSGGQ+ R+ +AR +    +V L+D+P SA+D
Sbjct: 148 ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182

Length = 254

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 38  RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
            TLVGD    LS  QR  + +ARA+   A V +LD+P +A+     + LF+
Sbjct: 140 DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186

Length = 500

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           G SLSGG+R R+ +ARA+       LLD+P + VD
Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169

Length = 241

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQ+ R+++ARA+     V L D+P +A+D
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173

Length = 242

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQ+ R+ +AR +  + +V L+D+P SA+D
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALD 180

Length = 252

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           G++LSGGQ+ R+ +AR +    +V L+D+P SA+D
Sbjct: 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179

Length = 251

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 29  DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
           +FA+L +     VG+    LSGG + R++LARA+    DV +LD+P + +D    +HL
Sbjct: 124 EFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHL 176

Length = 306

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 48/170 (28%)

Query: 19   RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
            +V +   LK    Q P     ++ D G  LS G +  + LAR++  +A + LLD+P + +
Sbjct: 1325 KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHL 1384

Query: 79   DA-------HVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131
            D           K  F +C                                         
Sbjct: 1385 DPVTLQIIRKTLKQSFSNC----------------------------------------- 1403

Query: 132  TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPE 181
            TV+L  H+++ L      +++E  SV+ + +  +LL     F Q + A +
Sbjct: 1404 TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 45  GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            ++LSGGQ+ R+ +ARA+  +  + LLD+P SA+D
Sbjct: 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174

Length = 246

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGGQR R+ +ARA+  R  V LLD+P + +D
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 29  DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
           +FA+L S     V      LSGG + R++LARA+     + +LD+P + +D H  +HL
Sbjct: 121 EFARLESKADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHL 173

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 46  VSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
             LSGGQ+ R+++ARA+  R  V L D+  SA+D
Sbjct: 145 AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 32/118 (27%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           SLS G++ R+ +ARA+ K  ++ +LD+P   +D    +                      
Sbjct: 171 SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI-AREQL------------------- 210

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTT 163
            +         GA +L+            +TH  + +     H +LL++G V A G  
Sbjct: 211 LNRLEELAASPGAPALL-----------FVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257

Length = 257

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 41/145 (28%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           +LSGGQ+ R+++ARA+     V L D+  SA+D    + + E     L   + R      
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE-----LLKEINR------ 188

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVM------LLEKGSV-E 158
                  LG+               T++LITH++  +  + D V       L+E+G+V E
Sbjct: 189 ------RLGL---------------TILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227

Query: 159 AFGT-TTQLLASGLDFTQLLDAPEE 182
            F    T L    +  T  L  PE+
Sbjct: 228 IFSHPKTPLAQKFIRSTLHLSIPED 252

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
            LS GQ+ R++LAR +     +++LD+P +A+D 
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 34/112 (30%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           SLSGGQ+ R+++A A+    D+ + D+P S +D    + + E                  
Sbjct: 126 SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE------------------ 167

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSV 157
                          L+R    + K V++ITH  ++L  V D V+LL  G++
Sbjct: 168 ---------------LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 34/126 (26%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQR R  LA  + +   V LLD+P + +D +   H  E                  
Sbjct: 138 DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN---HQVE------------------ 176

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQI-QYLTHVDHVMLLEKGSVEAFGTTTQ 165
                        + L+R    + KTV+ + H + Q   + DH+++L  G V A GT  +
Sbjct: 177 ------------LMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224

Query: 166 LLASGL 171
           ++  GL
Sbjct: 225 VMTPGL 230

Length = 255

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 42/137 (30%)

Query: 28  EDFAQLPSGDRTLVGDKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
            +F++L  GD     D  V   S G +AR++ A A     D+ L+D+ L+  DA      
Sbjct: 127 IEFSEL--GD---FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA----- 176

Query: 87  F-EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH 145
           F E C         R      +                       KTV+L++H    +  
Sbjct: 177 FQEKCQR-------RLRELLKQG----------------------KTVILVSHDPSSIKR 207

Query: 146 V-DHVMLLEKGSVEAFG 161
           + D  ++LEKG +   G
Sbjct: 208 LCDRALVLEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           +LSGGQ+ R+ +ARA+     V L+D+P SA+D
Sbjct: 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178

Length = 250

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            LSGG++ R++LARA+ K   + L D+P  ++D
Sbjct: 134 ELSGGEQQRVALARAILKPPPLILADEPTGSLD 166

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           LSGG++ R+++A AV  R DV LLD+P + +D
Sbjct: 128 LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
            LS GQ+ R++LAR    RA +++LD+P +A+D  
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163

Length = 204

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 35/121 (28%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           +LSGG + ++SLA A+     V LLD+P S +D    +    D I               
Sbjct: 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD-PASRRAIWDLI--------------- 176

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
                  L VR           K ++++L TH +     + D + ++  G +   G+  +
Sbjct: 177 -------LEVR-----------KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218

Query: 166 L 166
           L
Sbjct: 219 L 219

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 13  PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLD 72
            D   ++ V+   L++           + G+    +SGG+R R+S+A  +     V +LD
Sbjct: 115 SDAIRKKRVEDVLLRD------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILD 168

Query: 73  DPLSAVDAHVGKHL 86
           +P S +D+    +L
Sbjct: 169 EPTSGLDSFTALNL 182

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 45/135 (33%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+++A  +     + +LD+  S +D                            
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA-------------------------- 177

Query: 108 SFFGSALGVRGALSLVRTSFLKEK---TVMLITHQIQYLTHVDHVMLLEKGS-------V 157
                  G    L L+R   LK+K   TV+ ITH I      D V++L+ G        V
Sbjct: 178 -------GKEQILKLIRK--LKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPV 228

Query: 158 EAFGTTTQLLASGLD 172
           E F     L   GLD
Sbjct: 229 EIFSKVEMLKEIGLD 243

Length = 282

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 49  SGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
           SGGQR RI++ARA+  +  + +LD+P S++D  V   +  
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA 466

Length = 529

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 43  DKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSA 77
           DK V  LSGG+  R+++A  + + AD+YLLD+P SA
Sbjct: 448 DKNVKDLSGGELQRVAIAACLSRDADLYLLDEP-SA 482

Length = 590

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.98
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.97
KOG0058|consensus	716		99.97
KOG0055|consensus	1228		99.97
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.97
KOG0054|consensus	1381		99.97
KOG0055|consensus	1228		99.97
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.97
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.96
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.96
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.96
COG4987	573	CydC ABC-type transport system involved in cytochr	99.96
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.96
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.96
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.96
PLN03232	1495	ABC transporter C family member; Provisional	99.96
KOG0057|consensus	591		99.96
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.96
COG4988	559	CydD ABC-type transport system involved in cytochr	99.96
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.96
PLN03130	1622	ABC transporter C family member; Provisional	99.96
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.96
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.95
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.95
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.95
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.95
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.95
PLN03232	1495	ABC transporter C family member; Provisional	99.95
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.95
PLN03130	1622	ABC transporter C family member; Provisional	99.95
KOG0056|consensus	790		99.95
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.95
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.94
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.94
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.94
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.94
PTZ00243	1560	ABC transporter; Provisional	99.94
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.93
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.93
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.93
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.93
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.92
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.92
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.92
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.92
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.91
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.91
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.91
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.91
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.91
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.91
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.91
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.9
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.9
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.9
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.9
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.9
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.9
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.9
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.9
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.9
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.9
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.9
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.89
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.89
PTZ00243	1560	ABC transporter; Provisional	99.89
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.89
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.89
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.89
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.89
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.89
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.89
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.89
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.89
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.89
COG1123	539	ATPase components of various ABC-type transport sy	99.88
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.88
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.88
COG1123	539	ATPase components of various ABC-type transport sy	99.88
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.88
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.88
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.88
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.88
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.88
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.88
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.88
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.88
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.88
KOG0054|consensus	1381		99.88
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.88
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.88
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.88
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.88
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.88
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.88
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.88
COG4172	534	ABC-type uncharacterized transport system, duplica	99.87
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.87
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.87
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.87
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.87
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.87
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.87
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.87
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.87
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.87
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.87
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.87
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.87
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.87
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.87
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.87
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.87
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.87
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.87
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.87
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.87
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.87
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.87
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.87
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.87
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.86
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.86
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.86
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.86
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.86
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.86
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.86
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.86
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.86
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.86
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.86
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.86
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.86
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.86
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.86
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.86
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.86
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.86
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.86
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.86
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.86
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.86
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.86
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.86
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.86
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.86
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.86
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.86
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.86
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.86
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.86
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.86
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.86
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.86
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.86
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.86
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.86
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.86
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.86
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.86
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.86
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.85
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.85
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.85
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.85
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.85
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.85
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.85
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.85
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.85
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.85
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.85
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.85
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.85
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.85
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.85
PRK10938	490	putative molybdenum transport ATP-binding protein	99.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.85
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.85
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.85
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.85
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.85
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.85
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.84
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.84
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.84
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.84
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.84
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.84
COG4172	534	ABC-type uncharacterized transport system, duplica	99.84
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.84
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.84
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.84
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.84
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.84
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.84
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.84
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.84
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.84
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.84
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.84
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.84
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.84
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.84
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.84
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.84
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.84
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.84
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.84
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK10908	222	cell division protein FtsE; Provisional	99.84
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.83
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.83
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.83
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.83
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.83
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.83
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.83
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.83
cd03246	173	ABCC_Protease_Secretion This family represents the	99.83
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.83
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.83
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.83
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.83
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.83
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.82
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.82
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.82
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.82
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.82
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.82
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.82
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.82
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.82
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.82
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.82
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.82
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.81
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.81
PLN03211	659	ABC transporter G-25; Provisional	99.81
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.81
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.81
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.81
COG4181	228	Predicted ABC-type transport system involved in ly	99.81
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.81
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.81
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.81
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.81
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.8
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.8
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.8
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.8
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.8
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.8
COG4559	259	ABC-type hemin transport system, ATPase component	99.79
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.79
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.79
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.79
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.79
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.78
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.78
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.78
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.78
PRK10938	490	putative molybdenum transport ATP-binding protein	99.78
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.78
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.77
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.77
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.77
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.76
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.76
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.76
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.76
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.76
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.76
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.76
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.75
PRK13409	590	putative ATPase RIL; Provisional	99.75
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.75
PRK11147	635	ABC transporter ATPase component; Reviewed	99.75
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.75
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.74
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.74
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.74
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.74
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.74
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.74
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.73
PLN03073	718	ABC transporter F family; Provisional	99.73
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.72
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.72
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.72
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.72
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.72
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.72
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.71
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.71
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.71
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.71
PLN03140	1470	ABC transporter G family member; Provisional	99.71
PLN03073	718	ABC transporter F family; Provisional	99.7
PRK11147	635	ABC transporter ATPase component; Reviewed	99.7
PRK13409	590	putative ATPase RIL; Provisional	99.7
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.7
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.7
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.7
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.68
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.68
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.68
PLN03140	1470	ABC transporter G family member; Provisional	99.68
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.67
KOG0061|consensus	613		99.67
COG0488	530	Uup ATPase components of ABC transporters with dup	99.66
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.66
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.64
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.64
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.64
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.63
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.63
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.62
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.62
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.62
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.61
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.59
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.59
KOG0059|consensus	885		99.58
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.57
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.56
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.53
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.52
COG0488	530	Uup ATPase components of ABC transporters with dup	99.52
PHA02562	562	46 endonuclease subunit; Provisional	99.52
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.5
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.47
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.47
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.47
KOG0062|consensus	582		99.46
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.43
KOG0927|consensus	614		99.43
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.41
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.38
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.37
KOG0062|consensus	582		99.37
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.37
COG4178	604	ABC-type uncharacterized transport system, permeas	99.35
KOG0065|consensus	1391		99.34
PRK10869	553	recombination and repair protein; Provisional	99.33
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.32
KOG0927|consensus	614		99.32
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.32
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.32
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.3
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.29
PRK03918	880	chromosome segregation protein; Provisional	99.29
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.28
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.28
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.21
PRK01156	895	chromosome segregation protein; Provisional	99.21
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.19
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.16
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.13
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.12
KOG0066|consensus	807		99.12
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.06
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.05
KOG0060|consensus	659		99.05
PRK02224	880	chromosome segregation protein; Provisional	99.03
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.0
cd01128	249	rho_factor Transcription termination factor rho is	98.98
KOG0066|consensus	807		98.97
PRK00064	361	recF recombination protein F; Reviewed	98.93
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.88
KOG0065|consensus	1391		98.82
KOG2355|consensus	291		98.78
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.78
TIGR00611	365	recf recF protein. All proteins in this family for	98.67
PRK14079	349	recF recombination protein F; Provisional	98.62
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.58
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.56
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.55
KOG0064|consensus	728		98.49
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.45
KOG0063|consensus	592		98.43
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.43
KOG0063|consensus	592		98.41
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.41
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.37
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.28
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.21
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.18
PRK13695	174	putative NTPase; Provisional	98.17
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.13
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.94
PRK13830	818	conjugal transfer protein TrbE; Provisional	97.91
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.89
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.88
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	97.84
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.49
PRK06067	234	flagellar accessory protein FlaH; Validated	97.21
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	97.16
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.09
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	96.98
KOG0964|consensus	1200		96.93
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.81
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	96.76
KOG0933|consensus	1174		96.71
PRK13891	852	conjugal transfer protein TrbE; Provisional	96.67
PF13175	415	AAA_15: AAA ATPase domain	96.46
PF13166	712	AAA_13: AAA domain	96.32
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.27
COG3910	233	Predicted ATPase [General function prediction only	95.85
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.78
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	95.7
COG4637	373	Predicted ATPase [General function prediction only	95.66
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.34
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	95.29
COG3044	554	Predicted ATPase of the ABC class [General functio	95.12
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	95.04
KOG0962|consensus	1294		94.97
KOG0996|consensus	1293		94.83
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	94.76
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	94.57
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	94.01
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	93.47
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	93.38
PRK05399	854	DNA mismatch repair protein MutS; Provisional	92.6
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	92.15
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	91.17
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	90.57
PRK08699	325	DNA polymerase III subunit delta'; Validated	90.12
KOG0018|consensus	1141		89.67
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	83.83
PRK14088	440	dnaA chromosomal replication initiation protein; P	83.74
smart00382	148	AAA ATPases associated with a variety of cellular	80.55

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.98  E-value=7.3e-34  Score=269.87  Aligned_cols=138  Identities=28%  Similarity=0.463  Sum_probs=125.1

Q ss_pred             CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      +..+++++.++++.|++++++..+|.||+|.+|++|.+|||||||||+||||++++|+|||||||||+||+.+++.+.+.
T Consensus       448 ~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~  527 (588)
T PRK11174        448 PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA  527 (588)
T ss_pred             CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999988774


Q ss_pred             hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535         90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      +.                                 + ..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.++
T Consensus       528 l~---------------------------------~-~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~  573 (588)
T PRK11174        528 LN---------------------------------A-ASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA  573 (588)
T ss_pred             HH---------------------------------H-HhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence            32                                 1 2358999999999999999999999999999999999999988


Q ss_pred             cCCchhccCCCc
Q psy12535        170 GLDFTQLLDAPE  181 (209)
Q Consensus       170 ~~~~~~~~~~~~  181 (209)
                      .+.|.+++..+.
T Consensus       574 ~~~y~~l~~~q~  585 (588)
T PRK11174        574 GGLFATLLAHRQ  585 (588)
T ss_pred             chHHHHHHHHhh
Confidence            888888875543

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.97  E-value=2.6e-33  Score=272.73  Aligned_cols=138  Identities=30%  Similarity=0.549  Sum_probs=124.7

Q ss_pred             CCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535          9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      .+..++|.+.++++.++++++|..+|.||+|.|||+|.+|||||||||+|||||+++|+|||||||||+||+.+++.+.+
T Consensus       571 ~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~  650 (709)
T COG2274         571 NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ  650 (709)
T ss_pred             CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH
Confidence            34455677778888889999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535         89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                      .+..                                  ...++|+|+|||+++.++.||+|+||++|+|+++|+++++++
T Consensus       651 ~L~~----------------------------------~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~  696 (709)
T COG2274         651 NLLQ----------------------------------ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA  696 (709)
T ss_pred             HHHH----------------------------------HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence            6432                                  235799999999999999999999999999999999999999


Q ss_pred             ccCCchhccCCC
Q psy12535        169 SGLDFTQLLDAP  180 (209)
Q Consensus       169 ~~~~~~~~~~~~  180 (209)
                      .++.|.+++..+
T Consensus       697 ~~g~y~~l~~~q  708 (709)
T COG2274         697 QGGLYARLYQQQ  708 (709)
T ss_pred             hcChHHHHHhcc
Confidence            988888887543

>KOG0058|consensus

Probab=99.97  E-value=3.3e-33  Score=267.90  Aligned_cols=137  Identities=31%  Similarity=0.518  Sum_probs=121.3

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ..++++++.+++.|..++||..+|+||+|.|||+|.+|||||||||||||||+++|.||||||+|||||.+++..+-+.+
T Consensus       568 ~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL  647 (716)
T KOG0058|consen  568 NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL  647 (716)
T ss_pred             CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence            45667888899999999999999999999999999999999999999999999999999999999999998776665532


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      -.                                  ..+++|||+|+|+++.++.+|+|+++++|+|++.|+++|++++.
T Consensus       648 ~~----------------------------------~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~  693 (716)
T KOG0058|consen  648 DR----------------------------------LMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP  693 (716)
T ss_pred             HH----------------------------------hhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence            11                                  23579999999999999999999999999999999999999887


Q ss_pred             -CCchhccCCCc
Q psy12535        171 -LDFTQLLDAPE  181 (209)
Q Consensus       171 -~~~~~~~~~~~  181 (209)
                       +-|.++..++.
T Consensus       694 ~gly~~Lv~~q~  705 (716)
T KOG0058|consen  694 NGLYAKLVQRQL  705 (716)
T ss_pred             ccHHHHHHHHhc
Confidence             56777766554

>KOG0055|consensus

Probab=99.97  E-value=7.3e-33  Score=277.52  Aligned_cols=135  Identities=29%  Similarity=0.479  Sum_probs=122.1

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .+.+.+.++++.+..++||..+|+||||.||++|.+||||||||||||||+++||+||||||.|||||.++++.+-+.+ 
T Consensus      1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeAL- 1169 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEAL- 1169 (1228)
T ss_pred             CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHH-
Confidence            5667788889999999999999999999999999999999999999999999999999999999999998877765532 


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                      .                                + ...|+|.|+|+|+++.+.+||.|+|+++|+|+|+|+|++|++..+
T Consensus      1170 d--------------------------------~-a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G 1216 (1228)
T KOG0055|consen 1170 D--------------------------------R-AMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRG 1216 (1228)
T ss_pred             H--------------------------------H-hhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCC
Confidence            1                                1 246899999999999999999999999999999999999999888


Q ss_pred             CchhccCCC
Q psy12535        172 DFTQLLDAP  180 (209)
Q Consensus       172 ~~~~~~~~~  180 (209)
                      .|.++...+
T Consensus      1217 ~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1217 IYFRLVQLQ 1225 (1228)
T ss_pred             chHHHhhhc
Confidence            888887654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.97  E-value=9e-33  Score=261.85  Aligned_cols=136  Identities=32%  Similarity=0.565  Sum_probs=123.8

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      ++++.+.++++.+++++++..+|+||+|.+|++|..||||||||++||||++++|+|||||||||+||+.++..+.+.+.
T Consensus       430 at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~  509 (567)
T COG1132         430 ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK  509 (567)
T ss_pred             CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence            56678889999999999999999999999999999999999999999999999999999999999999999988877542


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                                       . ..+++|+|+|+|+++.+..||+|++|++|+|++.|+|++|+++.+
T Consensus       510 ---------------------------------~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g  555 (567)
T COG1132         510 ---------------------------------K-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGG  555 (567)
T ss_pred             ---------------------------------H-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCC
Confidence                                             1 125689999999999999999999999999999999999999988


Q ss_pred             CchhccCCCc
Q psy12535        172 DFTQLLDAPE  181 (209)
Q Consensus       172 ~~~~~~~~~~  181 (209)
                      .|.++|..+.
T Consensus       556 ~y~~l~~~~~  565 (567)
T COG1132         556 LYARLYQAQG  565 (567)
T ss_pred             HHHHHHHHhh
Confidence            8988886543

>KOG0054|consensus

Probab=99.97  E-value=8.5e-32  Score=273.96  Aligned_cols=140  Identities=54%  Similarity=0.934  Sum_probs=131.2

Q ss_pred             cCCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhh
Q psy12535          7 PMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL   86 (209)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~   86 (209)
                      .||.+++.++|++++++|+|..+++.+|.|+.|.|||+|.+|||||||||+||||+++++||+|||+|+||+|.++.+++
T Consensus       603 LFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~i  682 (1381)
T KOG0054|consen  603 LFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHI  682 (1381)
T ss_pred             hcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHH
Confidence            46888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535         87 FEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l  166 (209)
                      |+.|+..                                 ..++||+|+|||+++++..+|.|++|++|+|.+.|+++|+
T Consensus       683 f~~ci~~---------------------------------~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el  729 (1381)
T KOG0054|consen  683 FEECIRG---------------------------------LLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEEL  729 (1381)
T ss_pred             HHHHHHh---------------------------------hhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHH
Confidence            9999744                                 3478999999999999999999999999999999999999


Q ss_pred             hhccCCchhccCC
Q psy12535        167 LASGLDFTQLLDA  179 (209)
Q Consensus       167 ~~~~~~~~~~~~~  179 (209)
                      .+.+..+.++..+
T Consensus       730 ~~~~~~~~~l~~~  742 (1381)
T KOG0054|consen  730 LKSGGDFAELAHE  742 (1381)
T ss_pred             HhcchhHHHHhhc
Confidence            9888888777443

>KOG0055|consensus

Probab=99.97  E-value=3.9e-32  Score=272.28  Aligned_cols=138  Identities=30%  Similarity=0.494  Sum_probs=123.2

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      +++.+.+.++++.+..++||..+|+||+|++|++|.+|||||||||||||||+++|+||||||||||||+++++.+.+.+
T Consensus       453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL  532 (1228)
T KOG0055|consen  453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL  532 (1228)
T ss_pred             cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH
Confidence            45567777888888899999999999999999999999999999999999999999999999999999998777665532


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                       ..                                 ..+|+|.|+|+|+++.++++|+|++|++|+|++.|+|+||++..
T Consensus       533 -d~---------------------------------~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~  578 (1228)
T KOG0055|consen  533 -DK---------------------------------ASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG  578 (1228)
T ss_pred             -HH---------------------------------hhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc
Confidence             21                                 34789999999999999999999999999999999999999998


Q ss_pred             CCchhccCCCch
Q psy12535        171 LDFTQLLDAPEE  182 (209)
Q Consensus       171 ~~~~~~~~~~~~  182 (209)
                      +.|.+++..++.
T Consensus       579 G~Y~~lv~~Q~~  590 (1228)
T KOG0055|consen  579 GIYSSLVRLQEL  590 (1228)
T ss_pred             chHHHHHHHHhh
Confidence            889888876543

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.97  E-value=1.5e-31  Score=259.52  Aligned_cols=132  Identities=29%  Similarity=0.516  Sum_probs=121.1

Q ss_pred             CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      +..+++++.++++.+++++++..+|.|++|.+|++|.+|||||||||+||||++++|+|||||||||+||+.+++.+++.
T Consensus       578 ~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~  657 (710)
T TIGR03796       578 PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN  657 (710)
T ss_pred             CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999988774


Q ss_pred             hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535         90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      +.                                    ..++|+|+|||+++.+..+|+|++|++|+|++.|+++++++.
T Consensus       658 l~------------------------------------~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~  701 (710)
T TIGR03796       658 LR------------------------------------RRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV  701 (710)
T ss_pred             HH------------------------------------hcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc
Confidence            31                                    147899999999999999999999999999999999999988


Q ss_pred             cCCchhcc
Q psy12535        170 GLDFTQLL  177 (209)
Q Consensus       170 ~~~~~~~~  177 (209)
                      .+.|.+++
T Consensus       702 ~~~y~~l~  709 (710)
T TIGR03796       702 GGAYARLI  709 (710)
T ss_pred             CCcHHHHh
Confidence            87787765

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.9e-31  Score=257.96  Aligned_cols=131  Identities=28%  Similarity=0.444  Sum_probs=120.0

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .+++++.++++.|++++++..+|.|++|.+|++|.+||||||||++||||++++|+|||||||||+||+.+++.+.+.+.
T Consensus       553 ~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~  632 (686)
T TIGR03797       553 LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLE  632 (686)
T ss_pred             CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            56777888999999999999999999999999999999999999999999999999999999999999999988877431


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                                       .   .++|+|+|||+++.+..+|+|++|++|+|++.|+++++.+..+
T Consensus       633 ---------------------------------~---~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~  676 (686)
T TIGR03797       633 ---------------------------------R---LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG  676 (686)
T ss_pred             ---------------------------------H---hCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCc
Confidence                                             1   1579999999999999999999999999999999999998877


Q ss_pred             CchhccC
Q psy12535        172 DFTQLLD  178 (209)
Q Consensus       172 ~~~~~~~  178 (209)
                      .|.+++.
T Consensus       677 ~y~~l~~  683 (686)
T TIGR03797       677 LFAQLAR  683 (686)
T ss_pred             HHHHHHH
Confidence            7877765

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.96  E-value=2.1e-31  Score=253.40  Aligned_cols=136  Identities=23%  Similarity=0.391  Sum_probs=123.2

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      +.+++++.++++.+++++++..+|.|++|.+|+.|.+||||||||++||||++++|+|||||||||+||+.+.+.+.+.+
T Consensus       440 ~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l  519 (592)
T PRK10790        440 DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL  519 (592)
T ss_pred             CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999998887643


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      .                                 . ..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.++.
T Consensus       520 ~---------------------------------~-~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~  565 (592)
T PRK10790        520 A---------------------------------A-VREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ  565 (592)
T ss_pred             H---------------------------------H-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            2                                 1 12478999999999999999999999999999999999999988


Q ss_pred             CCchhccCCC
Q psy12535        171 LDFTQLLDAP  180 (209)
Q Consensus       171 ~~~~~~~~~~  180 (209)
                      +.|.+++..+
T Consensus       566 ~~y~~l~~~~  575 (592)
T PRK10790        566 GRYWQMYQLQ  575 (592)
T ss_pred             CHHHHHHHHH
Confidence            8888888654

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.96  E-value=2.8e-31  Score=251.75  Aligned_cols=134  Identities=26%  Similarity=0.457  Sum_probs=121.9

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .++++++++++.+++++++..+|.|++|.+|++|.+||||||||++||||++++|+|||||||||+||+.+...+++.+.
T Consensus       445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~  524 (582)
T PRK11176        445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD  524 (582)
T ss_pred             CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            56677888999999999999999999999999999999999999999999999999999999999999999998877432


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                      .                                  ..+++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+
T Consensus       525 ~----------------------------------~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~  570 (582)
T PRK11176        525 E----------------------------------LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG  570 (582)
T ss_pred             H----------------------------------HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence            1                                  124789999999999999999999999999999999999999888


Q ss_pred             CchhccCC
Q psy12535        172 DFTQLLDA  179 (209)
Q Consensus       172 ~~~~~~~~  179 (209)
                      .|.+++..
T Consensus       571 ~y~~l~~~  578 (582)
T PRK11176        571 VYAQLHKM  578 (582)
T ss_pred             hHHHHHHH
Confidence            88888754

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.6e-31  Score=245.33  Aligned_cols=136  Identities=28%  Similarity=0.522  Sum_probs=125.0

Q ss_pred             CCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535          9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      .+++++|.+.++++.++|++.+...|+|++|++||.|..|||||+||++|||+|+++.+++||||||.|||+.+++++++
T Consensus       436 ~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~  515 (573)
T COG4987         436 NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLA  515 (573)
T ss_pred             CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHH
Confidence            35567788999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535         89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                      .+..                                  ..++||+|+|||++..++.+|+|++|++|+++++|++.+++.
T Consensus       516 ll~~----------------------------------~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~  561 (573)
T COG4987         516 LLFE----------------------------------HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA  561 (573)
T ss_pred             HHHH----------------------------------HhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence            5432                                  236999999999999999999999999999999999999999


Q ss_pred             ccCCchhccC
Q psy12535        169 SGLDFTQLLD  178 (209)
Q Consensus       169 ~~~~~~~~~~  178 (209)
                      +.+.|.++++
T Consensus       562 ~~g~~~~l~q  571 (573)
T COG4987         562 NNGRYKRLYQ  571 (573)
T ss_pred             cccHHHHHhc
Confidence            8888877754

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.96  E-value=1.2e-30  Score=253.27  Aligned_cols=134  Identities=25%  Similarity=0.502  Sum_probs=120.5

Q ss_pred             CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      +..+++++.++++.+++++++..+|.||+|.+|++|.+|||||||||+||||++++|+|||||||||+||+.+++.+.+.
T Consensus       574 ~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~  653 (708)
T TIGR01193       574 ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNN  653 (708)
T ss_pred             CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence            34566777888999999999999999999999999999999999999999999999999999999999999998888764


Q ss_pred             hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535         90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      +                                 ..  .+++|+|+|||+++.+..+|+|++|++|++++.|+++++++.
T Consensus       654 L---------------------------------~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~  698 (708)
T TIGR01193       654 L---------------------------------LN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR  698 (708)
T ss_pred             H---------------------------------HH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence            3                                 22  147899999999999999999999999999999999999988


Q ss_pred             cCCchhccC
Q psy12535        170 GLDFTQLLD  178 (209)
Q Consensus       170 ~~~~~~~~~  178 (209)
                      .+.|.+++.
T Consensus       699 ~~~y~~l~~  707 (708)
T TIGR01193       699 NGFYASLIH  707 (708)
T ss_pred             CCcHHHHhh
Confidence            777877653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.96  E-value=7.9e-31  Score=249.54  Aligned_cols=137  Identities=28%  Similarity=0.493  Sum_probs=122.3

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      +.+++++..+++.+++++++..+|.|++|.+|++|.+||||||||++||||++++|+|+|||||||+||+.+...+++.+
T Consensus       435 ~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l  514 (588)
T PRK13657        435 DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL  514 (588)
T ss_pred             CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            45566777888889999999999999999999999999999999999999999999999999999999999998887743


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      .                                 . ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.+..
T Consensus       515 ~---------------------------------~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~  560 (588)
T PRK13657        515 D---------------------------------E-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG  560 (588)
T ss_pred             H---------------------------------H-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC
Confidence            2                                 1 12579999999999999999999999999999999999999888


Q ss_pred             CCchhccCCCc
Q psy12535        171 LDFTQLLDAPE  181 (209)
Q Consensus       171 ~~~~~~~~~~~  181 (209)
                      +.|.+++..+.
T Consensus       561 ~~y~~l~~~~~  571 (588)
T PRK13657        561 GRFAALLRAQG  571 (588)
T ss_pred             ChHHHHHHHhh
Confidence            88888876543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.96  E-value=1.3e-30  Score=269.98  Aligned_cols=137  Identities=29%  Similarity=0.461  Sum_probs=121.0

Q ss_pred             CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      ++++++.+.++++.++++++|..+|+||+|.||++|.+|||||||||+|||||+++|+|||||||||+||+.+++.+.+.
T Consensus      1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265       1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred             CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence            44677788889999999999999999999999999999999999999999999999999999999999999998888764


Q ss_pred             hhhccccCCCCccccchhhhhcccccccchhhhhhhhc-cccceeeeeeeehheecccceEEEeec----ccee-ecchh
Q psy12535         90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF-LKEKTVMLITHQIQYLTHVDHVMLLEK----GSVE-AFGTT  163 (209)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~~DrV~~L~~----G~i~-~~G~~  163 (209)
                      +.                                 ... .+++|+|+|||+++.++.||+|++|++    |+++ +.|++
T Consensus      1401 L~---------------------------------~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265       1401 IV---------------------------------DIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred             HH---------------------------------HHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence            32                                 212 258999999999999999999999999    9954 89999


Q ss_pred             hHHhh-ccCCchhccCC
Q psy12535        164 TQLLA-SGLDFTQLLDA  179 (209)
Q Consensus       164 ~~l~~-~~~~~~~~~~~  179 (209)
                      ++|++ .++.|.+++..
T Consensus      1448 ~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265       1448 EELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred             HHHHhcCCChHHHHHhh
Confidence            99998 47778777643

>PLN03232 ABC transporter C family member; Provisional

Probab=99.96  E-value=1.5e-30  Score=270.04  Aligned_cols=139  Identities=40%  Similarity=0.741  Sum_probs=125.1

Q ss_pred             CCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhh
Q psy12535          8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF   87 (209)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~   87 (209)
                      +|.+++++++.+++++|++.+++..+|.|++|.+|++|.+|||||||||+||||++++|+|||||||||+||++++++++
T Consensus       701 fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~  780 (1495)
T PLN03232        701 FGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF  780 (1495)
T ss_pred             cCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535         88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      +.++..                                 ..+++|+|+|||+++.+..+|+|++|++|+|++.|+++++.
T Consensus       781 ~~~l~~---------------------------------~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~  827 (1495)
T PLN03232        781 DSCMKD---------------------------------ELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELS  827 (1495)
T ss_pred             HHHhhh---------------------------------hhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHH
Confidence            876532                                 23689999999999999999999999999999999999999


Q ss_pred             hccCCchhccCC
Q psy12535        168 ASGLDFTQLLDA  179 (209)
Q Consensus       168 ~~~~~~~~~~~~  179 (209)
                      ++...|.+++..
T Consensus       828 ~~~~~~~~l~~~  839 (1495)
T PLN03232        828 KSGSLFKKLMEN  839 (1495)
T ss_pred             hcchhHHHHHHh
Confidence            877667666543

>KOG0057|consensus

Probab=99.96  E-value=2.3e-30  Score=242.43  Aligned_cols=137  Identities=32%  Similarity=0.608  Sum_probs=123.6

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ..+++.+.++++.+++++.+.++|.||.|.||++|..|||||||||+||||++++|+|++||||||+||.+++..+++.+
T Consensus       451 sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i  530 (591)
T KOG0057|consen  451 SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI  530 (591)
T ss_pred             CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHH
Confidence            34556666777778899999999999999999999999999999999999999999999999999999999999998865


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      ..                                  ...++|+|+|.|+++.+..||+|++|+||++.+.|+++++++..
T Consensus       531 ~~----------------------------------~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s  576 (591)
T KOG0057|consen  531 MD----------------------------------VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPS  576 (591)
T ss_pred             HH----------------------------------hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhh
Confidence            32                                  23689999999999999999999999999999999999999977


Q ss_pred             CCchhccCCCc
Q psy12535        171 LDFTQLLDAPE  181 (209)
Q Consensus       171 ~~~~~~~~~~~  181 (209)
                      ..|.++|..+.
T Consensus       577 ~~~~~~w~~~~  587 (591)
T KOG0057|consen  577 ELYADLWTTQT  587 (591)
T ss_pred             hHHHHHhcccc
Confidence            77888887654

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.96  E-value=2e-30  Score=252.46  Aligned_cols=130  Identities=35%  Similarity=0.545  Sum_probs=116.9

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ..+++.+.++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++++|+|||||||||+||+.+++.+.+ .
T Consensus       581 ~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~  659 (711)
T TIGR00958       581 DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S  659 (711)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h
Confidence            345677888999999999999999999999999999999999999999999999999999999999999998877755 1


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      .                                   ..+++|+|+|||+++.+..+|+|++|++|+|++.|++++++++.
T Consensus       660 ~-----------------------------------~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~  704 (711)
T TIGR00958       660 R-----------------------------------SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ  704 (711)
T ss_pred             h-----------------------------------ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC
Confidence            0                                   12578999999999999999999999999999999999999887


Q ss_pred             CCchhc
Q psy12535        171 LDFTQL  176 (209)
Q Consensus       171 ~~~~~~  176 (209)
                      +.|.++
T Consensus       705 ~~y~~l  710 (711)
T TIGR00958       705 GCYKHL  710 (711)
T ss_pred             CchHhc
Confidence            666654

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.4e-30  Score=245.32  Aligned_cols=137  Identities=31%  Similarity=0.503  Sum_probs=123.7

Q ss_pred             CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      +..+++.+.++++.+++.+++.. |.|+||.+|++|..|||||+|||++|||++++++++||||||++||.++++.+.+.
T Consensus       420 ~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~  498 (559)
T COG4988         420 PDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA  498 (559)
T ss_pred             CcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH
Confidence            33566788899999999999999 99999999999999999999999999999999999999999999999998888764


Q ss_pred             hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535         90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      +..                                  ..+++|+|+|||++..+..+|+|++|++|++++.|+++++.++
T Consensus       499 l~~----------------------------------l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~  544 (559)
T COG4988         499 LQE----------------------------------LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK  544 (559)
T ss_pred             HHH----------------------------------HHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence            322                                  2357999999999999999999999999999999999999999


Q ss_pred             cCCchhccCCCc
Q psy12535        170 GLDFTQLLDAPE  181 (209)
Q Consensus       170 ~~~~~~~~~~~~  181 (209)
                      .+.|.+++..+.
T Consensus       545 ~~~y~~l~~~q~  556 (559)
T COG4988         545 QGLYANLLKQQE  556 (559)
T ss_pred             CcHHHHHHHHHh
Confidence            888988876543

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.96  E-value=2.8e-30  Score=245.89  Aligned_cols=133  Identities=29%  Similarity=0.478  Sum_probs=120.5

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      +.+++.+.++++.+++++++.. |+||+|.+|++|.+||||||||++||||++++|++||||||||+||+.+++.+.+.+
T Consensus       440 ~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l  518 (574)
T PRK11160        440 NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL  518 (574)
T ss_pred             ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4566777888999999999999 999999999999999999999999999999999999999999999999998887743


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      .                                 . ..+++|+|+|||+++.+..+|+|++|++|++++.|++++++++.
T Consensus       519 ~---------------------------------~-~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~  564 (574)
T PRK11160        519 A---------------------------------E-HAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ  564 (574)
T ss_pred             H---------------------------------H-HcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence            2                                 1 12578999999999999999999999999999999999999988


Q ss_pred             CCchhccC
Q psy12535        171 LDFTQLLD  178 (209)
Q Consensus       171 ~~~~~~~~  178 (209)
                      +.|.++|.
T Consensus       565 g~y~~l~~  572 (574)
T PRK11160        565 GRYYQLKQ  572 (574)
T ss_pred             cHHHHHHh
Confidence            88888764

>PLN03130 ABC transporter C family member; Provisional

Probab=99.96  E-value=2.9e-30  Score=269.41  Aligned_cols=138  Identities=43%  Similarity=0.796  Sum_probs=124.6

Q ss_pred             CCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhh
Q psy12535          8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF   87 (209)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~   87 (209)
                      +|.+++++++.+++++|++.+++..+|.|++|.+|++|.+|||||||||+||||++++|+|||||||||+||+++.++++
T Consensus       701 fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~  780 (1622)
T PLN03130        701 FGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF  780 (1622)
T ss_pred             CCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHH
Confidence            45556778899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535         88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      +.++..                                 ..+++|+|+|||+++.+..+|+|++|++|+|++.|+++++.
T Consensus       781 ~~~l~~---------------------------------~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~  827 (1622)
T PLN03130        781 DKCIKD---------------------------------ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS  827 (1622)
T ss_pred             HHHhhH---------------------------------HhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence            876532                                 13589999999999999999999999999999999999998


Q ss_pred             hccCCchhccC
Q psy12535        168 ASGLDFTQLLD  178 (209)
Q Consensus       168 ~~~~~~~~~~~  178 (209)
                      +....|..++.
T Consensus       828 ~~~~~~~~l~~  838 (1622)
T PLN03130        828 NNGPLFQKLME  838 (1622)
T ss_pred             hcchhHHHHHH
Confidence            87666666554

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.96  E-value=5.6e-30  Score=248.05  Aligned_cols=125  Identities=31%  Similarity=0.518  Sum_probs=114.0

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ..+++++.++++.+++++++..+|.|++|.+|++|.+||||||||++||||++++|+|||||||||+||+.+++.+.+.+
T Consensus       565 ~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l  644 (694)
T TIGR03375       565 YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL  644 (694)
T ss_pred             CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999999887743


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      .                                 + ..+++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus       645 ~---------------------------------~-~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~  689 (694)
T TIGR03375       645 K---------------------------------R-WLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA  689 (694)
T ss_pred             H---------------------------------H-HhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence            2                                 1 1257899999999999999999999999999999999999764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.95  E-value=5.2e-30  Score=242.06  Aligned_cols=134  Identities=28%  Similarity=0.472  Sum_probs=119.8

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      +.+++++.++++.|++++++.++|.|++|.+|+.|..||||||||++||||++++|+|+|||||||+||..+.+.+++.+
T Consensus       433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L  512 (571)
T TIGR02203       433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL  512 (571)
T ss_pred             CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999887643


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      .                                 . ..+++|+|+|||+.+.+..||+|++|++|++++.|+++++.++.
T Consensus       513 ~---------------------------------~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~  558 (571)
T TIGR02203       513 E---------------------------------R-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN  558 (571)
T ss_pred             H---------------------------------H-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC
Confidence            2                                 1 23579999999999999999999999999999999999998776


Q ss_pred             CCchhccC
Q psy12535        171 LDFTQLLD  178 (209)
Q Consensus       171 ~~~~~~~~  178 (209)
                      ..|.+++.
T Consensus       559 ~~~~~~~~  566 (571)
T TIGR02203       559 GLYAQLHN  566 (571)
T ss_pred             CHHHHHHH
Confidence            66666544

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=1.6e-29  Score=215.01  Aligned_cols=108  Identities=23%  Similarity=0.485  Sum_probs=91.7

Q ss_pred             eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535         20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP   99 (209)
Q Consensus        20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~   99 (209)
                      .++..++.+..+.+|           .+|||||||||||||||+.+|+++|+|||||||||+....+.+           
T Consensus       120 lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~-----------  177 (240)
T COG1126         120 LLEKVGLADKADAYP-----------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD-----------  177 (240)
T ss_pred             HHHHcCchhhhhhCc-----------cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH-----------
Confidence            344445555555555           5999999999999999999999999999999999987777755           


Q ss_pred             Cccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                            .++.+...|+|.|+|||++.+++. +|||++|++|+|+++|++++++.+..
T Consensus       178 ----------------------vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~  228 (240)
T COG1126         178 ----------------------VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK  228 (240)
T ss_pred             ----------------------HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence                                  455556789999999999999987 69999999999999999999987754

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.8e-29  Score=231.04  Aligned_cols=136  Identities=25%  Similarity=0.492  Sum_probs=123.8

Q ss_pred             CCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535          9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      ++..+++....+++++.++++|..+|+||+|.|||+|-.|||||||||+|||+++++|+||+|||.||+||.++++.+..
T Consensus       361 r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~  440 (497)
T COG5265         361 RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA  440 (497)
T ss_pred             CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence            34566778888999999999999999999999999999999999999999999999999999999999999999888755


Q ss_pred             hhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535         89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                      .+.                                 + ...++|.++|.|+++.+..+|.|++|++|+|+|.|++++|+.
T Consensus       441 ~l~---------------------------------~-~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~  486 (497)
T COG5265         441 ALR---------------------------------E-VSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA  486 (497)
T ss_pred             HHH---------------------------------H-HhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence            321                                 1 236899999999999999999999999999999999999999


Q ss_pred             ccCCchhccC
Q psy12535        169 SGLDFTQLLD  178 (209)
Q Consensus       169 ~~~~~~~~~~  178 (209)
                      .++.|.++|.
T Consensus       487 ~~g~ya~mw~  496 (497)
T COG5265         487 AGGLYAEMWR  496 (497)
T ss_pred             cCChHHHHhc
Confidence            9999998885

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.95  E-value=1.5e-29  Score=245.20  Aligned_cols=136  Identities=30%  Similarity=0.510  Sum_probs=121.9

Q ss_pred             CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      +..+++.+.++++.+++++++..+|.|++|.+|+.|.+||||||||++||||++++|+|||||||||+||+.++..+.+.
T Consensus       556 ~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~  635 (694)
T TIGR01846       556 PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN  635 (694)
T ss_pred             CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH
Confidence            34556677788888999999999999999999999999999999999999999999999999999999999999888774


Q ss_pred             hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535         90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      +.                                 .. .+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+.
T Consensus       636 l~---------------------------------~~-~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~  681 (694)
T TIGR01846       636 MR---------------------------------EI-CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL  681 (694)
T ss_pred             HH---------------------------------HH-hCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence            32                                 21 257899999999999999999999999999999999999988


Q ss_pred             cCCchhccCC
Q psy12535        170 GLDFTQLLDA  179 (209)
Q Consensus       170 ~~~~~~~~~~  179 (209)
                      .+.|.+++..
T Consensus       682 ~~~y~~l~~~  691 (694)
T TIGR01846       682 QGLYARLWQQ  691 (694)
T ss_pred             CChHHHHHHh
Confidence            8888888754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.95  E-value=2.8e-29  Score=261.06  Aligned_cols=135  Identities=27%  Similarity=0.403  Sum_probs=121.9

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      .++++.+.++++.|++++++..+|.|++|.+|++|.+||||||||++|||||+++|+|||||||||+||..+...+.+.+
T Consensus      1385 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957      1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred             CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            56778888999999999999999999999999999999999999999999999999999999999999999887776532


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                                       ++ ..+++|+|+|+|+++.+..+|+|++|++|+|++.|+|++|+++.
T Consensus      1465 ---------------------------------~~-~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957      1465 ---------------------------------RT-QFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred             ---------------------------------HH-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence                                             22 23589999999999999999999999999999999999999887


Q ss_pred             CCchhccCC
Q psy12535        171 LDFTQLLDA  179 (209)
Q Consensus       171 ~~~~~~~~~  179 (209)
                      +.|.+++..
T Consensus      1511 ~~f~~l~~~ 1519 (1522)
T TIGR00957      1511 GIFYSMAKD 1519 (1522)
T ss_pred             CHHHHHHHH
Confidence            777777643

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.95  E-value=5.2e-29  Score=258.71  Aligned_cols=137  Identities=24%  Similarity=0.430  Sum_probs=122.3

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      +++++.+.++++.|++++++..+|.|++|.+|++|.+||||||||++|||||+++|+|||||||||+||..+.+.+.+.+
T Consensus      1335 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L 1414 (1495)
T PLN03232       1335 EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTI 1414 (1495)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            46677788899999999999999999999999999999999999999999999999999999999999999888776533


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                                       ++ ..+++|+|+|+|+++.+..+|+|++|++|+|++.|+|++|+++.
T Consensus      1415 ---------------------------------~~-~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232       1415 ---------------------------------RE-EFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred             ---------------------------------HH-HcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence                                             22 13589999999999999999999999999999999999999876


Q ss_pred             C-CchhccCCCc
Q psy12535        171 L-DFTQLLDAPE  181 (209)
Q Consensus       171 ~-~~~~~~~~~~  181 (209)
                      . .|.+++....
T Consensus      1461 ~~~f~~l~~~~~ 1472 (1495)
T PLN03232       1461 TSAFFRMVHSTG 1472 (1495)
T ss_pred             CCHHHHHHHHhC
Confidence            4 6888776543

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.95  E-value=5.3e-29  Score=236.75  Aligned_cols=136  Identities=29%  Similarity=0.518  Sum_probs=120.7

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ..+++.+..+++.+++++++..+|.|++|.+|+++.+||||||||++||||++++|+|||||||||+||+.+...+.+.+
T Consensus       415 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l  494 (569)
T PRK10789        415 DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL  494 (569)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            34556677788888999999999999999999999999999999999999999999999999999999999988887743


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      .                                 . ..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+..
T Consensus       495 ~---------------------------------~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~  540 (569)
T PRK10789        495 R---------------------------------Q-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS  540 (569)
T ss_pred             H---------------------------------H-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC
Confidence            2                                 2 12588999999999999999999999999999999999999888


Q ss_pred             CCchhccCCC
Q psy12535        171 LDFTQLLDAP  180 (209)
Q Consensus       171 ~~~~~~~~~~  180 (209)
                      +.|.+++..+
T Consensus       541 ~~y~~l~~~~  550 (569)
T PRK10789        541 GWYRDMYRYQ  550 (569)
T ss_pred             ChHHHHHHHh
Confidence            7888877543

>PLN03130 ABC transporter C family member; Provisional

Probab=99.95  E-value=4.2e-29  Score=260.70  Aligned_cols=136  Identities=27%  Similarity=0.475  Sum_probs=121.4

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      +++++.+.++++.|++++++..+|.|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||..+...+.+.+
T Consensus      1338 ~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I 1417 (1622)
T PLN03130       1338 EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417 (1622)
T ss_pred             CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999988776533


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc-
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS-  169 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~-  169 (209)
                                                       ++. .+++|+|+|+|+++.+..||+|++|++|+|++.|+|++|+++ 
T Consensus      1418 ---------------------------------~~~-~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~ 1463 (1622)
T PLN03130       1418 ---------------------------------REE-FKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNE 1463 (1622)
T ss_pred             ---------------------------------HHH-CCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence                                             222 358999999999999999999999999999999999999986 


Q ss_pred             cCCchhccCCC
Q psy12535        170 GLDFTQLLDAP  180 (209)
Q Consensus       170 ~~~~~~~~~~~  180 (209)
                      ++.|.+++...
T Consensus      1464 ~g~f~~L~~~~ 1474 (1622)
T PLN03130       1464 GSAFSKMVQST 1474 (1622)
T ss_pred             CCHHHHHHHHc
Confidence            46677776543

>KOG0056|consensus

Probab=99.95  E-value=6.9e-29  Score=230.85  Aligned_cols=139  Identities=23%  Similarity=0.520  Sum_probs=124.6

Q ss_pred             CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      +.++++.+.++++++++++.|..+|+||+|.|||+|-.|||||||||||||++++.|.+++|||+||+||..+++.+-. 
T Consensus       637 ~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQa-  715 (790)
T KOG0056|consen  637 PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQA-  715 (790)
T ss_pred             CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHH-
Confidence            4567788889999999999999999999999999999999999999999999999999999999999999998887744 


Q ss_pred             hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535         90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      ++..                                 .-.++|.|+|.|+++.+-++|.|+++++|+|++.|+++|+...
T Consensus       716 aL~r---------------------------------lca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r  762 (790)
T KOG0056|consen  716 ALAR---------------------------------LCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR  762 (790)
T ss_pred             HHHH---------------------------------HhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence            2222                                 1358899999999999999999999999999999999999976


Q ss_pred             -cCCchhccCCCch
Q psy12535        170 -GLDFTQLLDAPEE  182 (209)
Q Consensus       170 -~~~~~~~~~~~~~  182 (209)
                       ++.|.++|+.+..
T Consensus       763 dgG~Ya~MWq~qqa  776 (790)
T KOG0056|consen  763 DGGAYADMWQAQQA  776 (790)
T ss_pred             cCCcHHHHHHHHHh
Confidence             6789999975544

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.95  E-value=1.3e-28  Score=233.01  Aligned_cols=134  Identities=32%  Similarity=0.536  Sum_probs=119.1

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .+++++.++++.+++.+++..+|.|++|.+|+.|..||||||||++||||++++|++||||||||+||+.+++.+++.+.
T Consensus       441 ~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~  520 (576)
T TIGR02204       441 ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE  520 (576)
T ss_pred             CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence            45567778888899999999999999999999999999999999999999999999999999999999998887766432


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                                       .. .+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+...
T Consensus       521 ---------------------------------~~-~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~  566 (576)
T TIGR02204       521 ---------------------------------TL-MKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG  566 (576)
T ss_pred             ---------------------------------HH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence                                             21 25789999999999999999999999999999999999988877


Q ss_pred             CchhccCC
Q psy12535        172 DFTQLLDA  179 (209)
Q Consensus       172 ~~~~~~~~  179 (209)
                      .|.+++..
T Consensus       567 ~~~~l~~~  574 (576)
T TIGR02204       567 LYARLARL  574 (576)
T ss_pred             hHHHHHhh
Confidence            78777643

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=6.7e-29  Score=220.14  Aligned_cols=103  Identities=27%  Similarity=0.428  Sum_probs=88.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+....+..+.+|||||||||+|||||+.+|+|||.|||||||||.+.+.+.+.                          
T Consensus       130 gL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L--------------------------  183 (339)
T COG1135         130 GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILEL--------------------------  183 (339)
T ss_pred             CChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH--------------------------
Confidence            344444555679999999999999999999999999999999999999888773                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                             ++...+ -|-||++|||.|+.++. ||||++|++|+|+++|+..+++.+..
T Consensus       184 -------L~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk  234 (339)
T COG1135         184 -------LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK  234 (339)
T ss_pred             -------HHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence                   223332 38899999999999986 89999999999999999999988753

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.94  E-value=1.4e-28  Score=234.83  Aligned_cols=135  Identities=28%  Similarity=0.471  Sum_probs=119.3

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .+++...++++.+++++++..+|.|++|.+|+.+..||||||||++|||||+++|++||||||||+||+.+++.+.+.+ 
T Consensus       436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l-  514 (585)
T TIGR01192       436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI-  514 (585)
T ss_pred             CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH-
Confidence            3445566677778899999999999999999999999999999999999999999999999999999999988886643 


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                                      .. ..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.++.+
T Consensus       515 --------------------------------~~-~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~  561 (585)
T TIGR01192       515 --------------------------------DA-LRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDG  561 (585)
T ss_pred             --------------------------------HH-HhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCC
Confidence                                            12 135789999999999998899999999999999999999998888


Q ss_pred             CchhccCCC
Q psy12535        172 DFTQLLDAP  180 (209)
Q Consensus       172 ~~~~~~~~~  180 (209)
                      .|.+++...
T Consensus       562 ~y~~l~~~~  570 (585)
T TIGR01192       562 RFYKLLRRS  570 (585)
T ss_pred             hHHHHHHhC
Confidence            888887654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.94  E-value=1.9e-28  Score=231.49  Aligned_cols=124  Identities=33%  Similarity=0.519  Sum_probs=110.0

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .+++.+.++++.+++++++..+|.|++|.+|+++.+||||||||++||||++++|++||||||||+||+.++..+.+.+.
T Consensus       419 ~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~  498 (544)
T TIGR01842       419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK  498 (544)
T ss_pred             CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence            45566667788889999999999999999999999999999999999999999999999999999999998888876432


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                                                       ....+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+
T Consensus       499 ---------------------------------~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       499 ---------------------------------ALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             ---------------------------------HHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence                                             22225789999999999888899999999999999999998864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.94  E-value=1.6e-28  Score=228.61  Aligned_cols=131  Identities=32%  Similarity=0.522  Sum_probs=118.2

Q ss_pred             ccCCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhh
Q psy12535          6 APMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKH   85 (209)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~   85 (209)
                      +.|+.+.+.+.+-++++.++.|+.|.++|+||+|.+|+.|..|||||||||+|||||+.+|.+++||||.|+||..-+..
T Consensus       431 aRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~A  510 (580)
T COG4618         431 ARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA  510 (580)
T ss_pred             HhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHH
Confidence            45666777777888888899999999999999999999999999999999999999999999999999999999988877


Q ss_pred             hhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhH
Q psy12535         86 LFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQ  165 (209)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~  165 (209)
                      +.+.+.                                 ..+.+|.|+|+|||+++.+..+|+|++|++|++..+|+.+|
T Consensus       511 L~~Ai~---------------------------------~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~e  557 (580)
T COG4618         511 LAAAIL---------------------------------AAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE  557 (580)
T ss_pred             HHHHHH---------------------------------HHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHH
Confidence            766433                                 22457899999999999999999999999999999999999


Q ss_pred             Hhhc
Q psy12535        166 LLAS  169 (209)
Q Consensus       166 l~~~  169 (209)
                      ++++
T Consensus       558 VLa~  561 (580)
T COG4618         558 VLAK  561 (580)
T ss_pred             HHHH
Confidence            9865

>PTZ00243 ABC transporter; Provisional

Probab=99.94  E-value=1.3e-28  Score=256.35  Aligned_cols=136  Identities=21%  Similarity=0.401  Sum_probs=121.6

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhh-cceeeccCcchhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKR-ADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~-p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      .++++.++++++.|++++++..+|.|++|.+|++|.+|||||||||+|||||+++ |+|||||||||+||+.+.+.+.+.
T Consensus      1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243       1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred             CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            5677888999999999999999999999999999999999999999999999996 899999999999999998888663


Q ss_pred             hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535         90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      +.                                 + ..+++|+|+|+|+++.+..+|+|++|++|+|++.|++++|+++
T Consensus      1489 L~---------------------------------~-~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243       1489 VM---------------------------------S-AFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred             HH---------------------------------H-HCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            32                                 2 2357999999999999999999999999999999999999975


Q ss_pred             -cCCchhccCCC
Q psy12535        170 -GLDFTQLLDAP  180 (209)
Q Consensus       170 -~~~~~~~~~~~  180 (209)
                       ...|.+++...
T Consensus      1535 ~~~~f~~l~~~~ 1546 (1560)
T PTZ00243       1535 RQSIFHSMVEAL 1546 (1560)
T ss_pred             CCCHHHHHHHHh
Confidence             56788777554

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.93  E-value=8.1e-28  Score=249.75  Aligned_cols=136  Identities=24%  Similarity=0.364  Sum_probs=121.6

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      .++++.+.++++.|++.+++..+|.|++|.+++.|.+|||||||||+|||||+++|+|||||||||+||..+...+.+.+
T Consensus      1317 ~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L 1396 (1490)
T TIGR01271      1317 QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396 (1490)
T ss_pred             CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999988886643


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      .                                 . ..+++|||+|||+++.+..+|+|++|++|+|++.|+|.+|++..
T Consensus      1397 ~---------------------------------~-~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~ 1442 (1490)
T TIGR01271      1397 K---------------------------------Q-SFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNET 1442 (1490)
T ss_pred             H---------------------------------H-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence            2                                 2 23579999999999999999999999999999999999999766


Q ss_pred             CCchhccCCC
Q psy12535        171 LDFTQLLDAP  180 (209)
Q Consensus       171 ~~~~~~~~~~  180 (209)
                      ..|.+++...
T Consensus      1443 ~~f~~l~~~~ 1452 (1490)
T TIGR01271      1443 SLFKQAMSAA 1452 (1490)
T ss_pred             cHHHHHHHHh
Confidence            6677776543

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.6e-27  Score=204.26  Aligned_cols=125  Identities=23%  Similarity=0.436  Sum_probs=99.9

Q ss_pred             CCccccCCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhh
Q psy12535          2 GPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH   81 (209)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~   81 (209)
                      |+...++..+...++...+++.+++.+...+.|.           .||||||||||||.+|+.+|++||||||||+||+.
T Consensus       104 g~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~-----------~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~  172 (235)
T COG1122         104 GLENLGLPREEIEERVAEALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK  172 (235)
T ss_pred             chhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc-----------ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHH
Confidence            4333333332223455667777777777666665           99999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceee
Q psy12535         82 VGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEA  159 (209)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~  159 (209)
                      ..+.+++                                 +++++... ++|+|++||+++.+.. +|+|++|++|+++.
T Consensus       173 ~~~~l~~---------------------------------~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~  219 (235)
T COG1122         173 GRRELLE---------------------------------LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA  219 (235)
T ss_pred             HHHHHHH---------------------------------HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence            8888866                                 34444444 6899999999999876 89999999999999


Q ss_pred             cchhhHHhhcc
Q psy12535        160 FGTTTQLLASG  170 (209)
Q Consensus       160 ~G~~~~l~~~~  170 (209)
                      +|++.+++++.
T Consensus       220 ~g~p~~i~~~~  230 (235)
T COG1122         220 DGDPAEIFNDA  230 (235)
T ss_pred             cCCHHHHhhhh
Confidence            99999988653

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.93  E-value=3.6e-27  Score=207.04  Aligned_cols=133  Identities=24%  Similarity=0.403  Sum_probs=114.9

Q ss_pred             CCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhc
Q psy12535         14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG   93 (209)
Q Consensus        14 ~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~   93 (209)
                      .+++.++++.+++.+++..+|.+++|.+++.+..||||||||++||||++.+|+||||||||++||+.+...+.+.+   
T Consensus       105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l---  181 (275)
T cd03289         105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL---  181 (275)
T ss_pred             HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH---
Confidence            34556677788999999999999999999999999999999999999999999999999999999999887776532   


Q ss_pred             cccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCc
Q psy12535         94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDF  173 (209)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~  173 (209)
                                                    +.. ..++|||+|||+++.+..||+|++|++|++++.|+++++..+...|
T Consensus       182 ------------------------------~~~-~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~  230 (275)
T cd03289         182 ------------------------------KQA-FADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF  230 (275)
T ss_pred             ------------------------------HHh-cCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHH
Confidence                                          221 2478999999999998889999999999999999999999876556


Q ss_pred             hhccCCC
Q psy12535        174 TQLLDAP  180 (209)
Q Consensus       174 ~~~~~~~  180 (209)
                      .+++...
T Consensus       231 ~~~~~~~  237 (275)
T cd03289         231 KQAISPS  237 (275)
T ss_pred             HHHHhhc
Confidence            6666544

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.93  E-value=7e-27  Score=242.31  Aligned_cols=135  Identities=22%  Similarity=0.366  Sum_probs=115.8

Q ss_pred             CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535         13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT   92 (209)
Q Consensus        13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~   92 (209)
                      +++.+.++++.+++++++..+|.||+|.+|+++.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+  
T Consensus       545 ~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L--  622 (1466)
T PTZ00265        545 KDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI--  622 (1466)
T ss_pred             CHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH--
Confidence            334556677778899999999999999999999999999999999999999999999999999999999888886633  


Q ss_pred             ccccCCCCccccchhhhhcccccccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeecc----------------
Q psy12535         93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKG----------------  155 (209)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G----------------  155 (209)
                                                     .+... +++|+|+|||+++.+..||+|++|++|                
T Consensus       623 -------------------------------~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~  671 (1466)
T PTZ00265        623 -------------------------------NNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT  671 (1466)
T ss_pred             -------------------------------HHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence                                           22222 478999999999999889999999986                


Q ss_pred             -------------------------------ceeecchhhHHhh-ccCCchhccCCC
Q psy12535        156 -------------------------------SVEAFGTTTQLLA-SGLDFTQLLDAP  180 (209)
Q Consensus       156 -------------------------------~i~~~G~~~~l~~-~~~~~~~~~~~~  180 (209)
                                                     +|+++|++++|++ ..+.|..+...+
T Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q  728 (1466)
T PTZ00265        672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ  728 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence                                           4999999999997 466777776443

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=9.5e-27  Score=207.25  Aligned_cols=114  Identities=24%  Similarity=0.425  Sum_probs=93.3

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      ++..++++.++|..+-...|.           +|||||||||.|||||+.+|+|||+|||+|+|||-.+..+-++++.. 
T Consensus       143 ~~a~~~l~~VgL~~~~~~yp~-----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L-  210 (386)
T COG4175         143 ERALEALELVGLEGYADKYPN-----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL-  210 (386)
T ss_pred             HHHHHHHHHcCchhhhhcCcc-----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH-
Confidence            344455666666666666664           99999999999999999999999999999999998887776654422 


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhccC
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                                  .   ..-.||||+||||++.. +..|||.+|++|+|++.|+|+|+..+..
T Consensus       211 ----------------------------q---~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA  257 (386)
T COG4175         211 ----------------------------Q---AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA  257 (386)
T ss_pred             ----------------------------H---HHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence                                        1   22378999999999874 5689999999999999999999987654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.92  E-value=2.2e-26  Score=239.45  Aligned_cols=136  Identities=50%  Similarity=0.838  Sum_probs=118.7

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      +.+++++.+++++|++.+++..+|.|++|.+|++|.+|||||||||+||||++.+|+|+|||||||+||+.+.+.+++.+
T Consensus       724 ~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l  803 (1522)
T TIGR00957       724 ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV  803 (1522)
T ss_pred             ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence            34455677888999999999999999999999999999999999999999999999999999999999999999998865


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      +..                               ....+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+..
T Consensus       804 ~~~-------------------------------~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~  852 (1522)
T TIGR00957       804 IGP-------------------------------EGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD  852 (1522)
T ss_pred             hhh-------------------------------hhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcc
Confidence            421                               0013578999999999999889999999999999999999998766


Q ss_pred             CCchhcc
Q psy12535        171 LDFTQLL  177 (209)
Q Consensus       171 ~~~~~~~  177 (209)
                      ..|.+++
T Consensus       853 ~~~~~l~  859 (1522)
T TIGR00957       853 GAFAEFL  859 (1522)
T ss_pred             hhHHHHH
Confidence            5565554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.3e-26  Score=199.72  Aligned_cols=94  Identities=30%  Similarity=0.546  Sum_probs=82.4

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      +++.+|||||+|||||||||+.+|++||||||||+||...+.++++-+.                               
T Consensus       137 R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~-------------------------------  185 (252)
T COG1124         137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLL-------------------------------  185 (252)
T ss_pred             cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHH-------------------------------
Confidence            3344999999999999999999999999999999999998888876332                               


Q ss_pred             hhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        123 VRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       123 ~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                        +.. ..+.|.|+||||+..+.+ ||||+||++|++++.++..++...
T Consensus       186 --~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~  232 (252)
T COG1124         186 --ELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH  232 (252)
T ss_pred             --HHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence              222 247799999999999987 899999999999999999999876

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.92  E-value=2e-26  Score=200.28  Aligned_cols=98  Identities=28%  Similarity=0.436  Sum_probs=83.8

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      .+.+.+|||||+|||.+||||+.+|+|+||||||+||||.++..+-+.+...                            
T Consensus       130 ~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l----------------------------  181 (309)
T COG1125         130 DRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL----------------------------  181 (309)
T ss_pred             hcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH----------------------------
Confidence            3444599999999999999999999999999999999999988886643221                            


Q ss_pred             hhhhhccccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhccC
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                          +..-++|||+||||++.+ ..+|||++|++|+|++.++|++++.+..
T Consensus       182 ----q~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa  228 (309)
T COG1125         182 ----QKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA  228 (309)
T ss_pred             ----HHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence                122489999999999875 5689999999999999999999998754

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.3e-26  Score=197.08  Aligned_cols=115  Identities=28%  Similarity=0.422  Sum_probs=93.3

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      +.++.+++.++|++.+.+       .+.+.+.+|||||||||+|||||+.+|+|||||||||+|||.+...+-+ ++.. 
T Consensus       124 eiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe-Li~e-  194 (253)
T COG1117         124 EIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE-LITE-  194 (253)
T ss_pred             HHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH-HHHH-
Confidence            445666777777765432       2334566899999999999999999999999999999999988777744 3322 


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                                     + +++-|||+|||++..+.. +|+++++..|++++.|+.++++.+.
T Consensus       195 -------------------------------L-k~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P  239 (253)
T COG1117         195 -------------------------------L-KKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNP  239 (253)
T ss_pred             -------------------------------H-HhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCc
Confidence                                           2 256799999999998776 6999999999999999999998764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.91  E-value=6.1e-26  Score=235.78  Aligned_cols=134  Identities=43%  Similarity=0.748  Sum_probs=116.9

Q ss_pred             CCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535          9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      |..++.+++.+++++|++.+++..+|.|++|.+|++|.+|||||||||+||||++.+|+|||||||||+||+.+.+++++
T Consensus       510 g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~  589 (1490)
T TIGR01271       510 GLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE  589 (1490)
T ss_pred             ccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            33344456777888999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535         89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                      .|+..                                 ..+++|+|+|||+++.+..||+|++|++|++++.|+++++..
T Consensus       590 ~~l~~---------------------------------~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       590 SCLCK---------------------------------LMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA  636 (1490)
T ss_pred             HHHHH---------------------------------HhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            65432                                 125889999999999998899999999999999999999987


Q ss_pred             ccCCchh
Q psy12535        169 SGLDFTQ  175 (209)
Q Consensus       169 ~~~~~~~  175 (209)
                      ....|..
T Consensus       637 ~~~~~~~  643 (1490)
T TIGR01271       637 KRPDFSS  643 (1490)
T ss_pred             cChHHHH
Confidence            5444433

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.91  E-value=2.3e-25  Score=189.16  Aligned_cols=120  Identities=29%  Similarity=0.555  Sum_probs=102.3

Q ss_pred             eechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccc
Q psy12535         24 CALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS  103 (209)
Q Consensus        24 ~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
                      .++.+.+..+|.++++.++..+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.              
T Consensus       115 ~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~--------------  180 (237)
T cd03252         115 AGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN--------------  180 (237)
T ss_pred             cCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH--------------
Confidence            455566778888889888999999999999999999999999999999999999999988887663              


Q ss_pred             cchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhcc
Q psy12535        104 RWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL  177 (209)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~  177 (209)
                                         ++... +++|||++||+++.+..+|+|++|++|++++.|+++++..+...|..++
T Consensus       181 -------------------l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~  234 (237)
T cd03252         181 -------------------MHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY  234 (237)
T ss_pred             -------------------HHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence                               22222 4789999999999987799999999999999999999887655554443

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.91  E-value=6.7e-26  Score=213.00  Aligned_cols=108  Identities=35%  Similarity=0.572  Sum_probs=96.9

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ..+++.+.++++.+++++++..+|.|++|.+|++|.+||||||||++||||++++|+++|||||||+||+.+.+.+++.+
T Consensus       422 ~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l  501 (529)
T TIGR02857       422 DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEAL  501 (529)
T ss_pred             CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            34556777889999999999999999999999999999999999999999999999999999999999999999887743


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL  152 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L  152 (209)
                      .                                 . ..+++|+|+|||+++.+..+|+|++|
T Consensus       502 ~---------------------------------~-~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       502 R---------------------------------A-LAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             H---------------------------------H-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            2                                 1 12578999999999999999999986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.91  E-value=6.1e-25  Score=195.60  Aligned_cols=131  Identities=22%  Similarity=0.365  Sum_probs=101.0

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+|||||+|||.||.||+.+|++||.||||+|||...+.++++                                 
T Consensus       148 ~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~---------------------------------  194 (316)
T COG0444         148 KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD---------------------------------  194 (316)
T ss_pred             hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH---------------------------------
Confidence            44455999999999999999999999999999999999999888876                                 


Q ss_pred             hhhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhc-cCCCchhh-------hhhccc
Q psy12535        122 LVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQL-LDAPEEED-------KAENEV  190 (209)
Q Consensus       122 ~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~-~~~~~~~~-------~~~~~~  190 (209)
                      ++++.. ..+.|+|+||||+..+.. ||||+||..|+|+|.|+.++++.+.. .|++. +.......       ......
T Consensus       195 Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~~~~l~~ipG~~p~l  274 (316)
T COG0444         195 LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRLGERLPPIPGSPPSL  274 (316)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHHHHhCccccCCcCCCCCCCCcc
Confidence            333333 358999999999998875 89999999999999999999998765 34433 22211111       112334


Q ss_pred             CCCCCcceecccccc
Q psy12535        191 DDNASGTLLHPRQSS  205 (209)
Q Consensus       191 ~~~~~~~~~~~~~~~  205 (209)
                      ...+.||.||||-.+
T Consensus       275 ~~~p~GC~F~pRC~~  289 (316)
T COG0444         275 LNPPKGCRFHPRCPY  289 (316)
T ss_pred             cCCCCCCccccccch
Confidence            446678999988544

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=4.3e-25  Score=190.28  Aligned_cols=104  Identities=33%  Similarity=0.450  Sum_probs=84.9

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      .+++|||||++|++||||++.+|+|+++||||+||||.+...+ +.++..                              
T Consensus       142 ~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~------------------------------  190 (263)
T COG1127         142 YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRE------------------------------  190 (263)
T ss_pred             CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHH------------------------------
Confidence            3459999999999999999999999999999999999866555 433332                              


Q ss_pred             hhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCCc-hhccCCC
Q psy12535        124 RTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLDF-TQLLDAP  180 (209)
Q Consensus       124 ~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~~-~~~~~~~  180 (209)
                        +.. -+.|+|+||||++.+.. ||||++|.+|+|++.|+++++.++...+ .+++...
T Consensus       191 --L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~G~  248 (263)
T COG1127         191 --LNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFNGI  248 (263)
T ss_pred             --HHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHhcCC
Confidence              222 27899999999998765 7999999999999999999999865543 5555443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.91  E-value=2.1e-25  Score=194.48  Aligned_cols=94  Identities=32%  Similarity=0.481  Sum_probs=82.1

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      +...+||||||||+.|||||+.+|+|||||||||+||..++-.+++.                                 
T Consensus       134 r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l---------------------------------  180 (258)
T COG1120         134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL---------------------------------  180 (258)
T ss_pred             CcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH---------------------------------
Confidence            34469999999999999999999999999999999999988888773                                 


Q ss_pred             hhhhc-cccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhc
Q psy12535        123 VRTSF-LKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       123 ~~~~~-~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      +++.. .+|+|||+|+||++.+ ++||++++|++|+++++|++++++..
T Consensus       181 l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~  229 (258)
T COG1120         181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE  229 (258)
T ss_pred             HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence            33333 3589999999999986 46899999999999999999988754

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.90  E-value=1.6e-25  Score=210.35  Aligned_cols=97  Identities=37%  Similarity=0.603  Sum_probs=87.7

Q ss_pred             CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      +..+++++.++++.|++++++..+|+|++|.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.
T Consensus       433 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~  512 (529)
T TIGR02868       433 PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLED  512 (529)
T ss_pred             CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999988775


Q ss_pred             hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeeh
Q psy12535         90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQI  140 (209)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l  140 (209)
                      +..                                  ..+++|+|+|||++
T Consensus       513 l~~----------------------------------~~~~~TvIiItHrl  529 (529)
T TIGR02868       513 LLA----------------------------------ALSGKTVVVITHHL  529 (529)
T ss_pred             HHH----------------------------------hcCCCEEEEEecCC
Confidence            431                                  23578999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.90  E-value=4.9e-25  Score=186.86  Aligned_cols=120  Identities=30%  Similarity=0.605  Sum_probs=101.7

Q ss_pred             eeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCC
Q psy12535         21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR  100 (209)
Q Consensus        21 ~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~  100 (209)
                      ++.+++.+.+..+|.|+++.+...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.           
T Consensus       111 ~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~-----------  179 (236)
T cd03253         111 AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA-----------  179 (236)
T ss_pred             HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------
Confidence            344566677788888999999999999999999999999999999999999999999999988877663           


Q ss_pred             ccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCch
Q psy12535        101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT  174 (209)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~  174 (209)
                                            +..... ++|||++||+++.+..||++++|++|++++.|+.+++......+.
T Consensus       180 ----------------------l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~  230 (236)
T cd03253         180 ----------------------LRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYA  230 (236)
T ss_pred             ----------------------HHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHH
Confidence                                  223233 789999999999987799999999999999999988876543333

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.90  E-value=2.2e-24  Score=182.61  Aligned_cols=115  Identities=34%  Similarity=0.583  Sum_probs=99.2

Q ss_pred             eechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccc
Q psy12535         24 CALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS  103 (209)
Q Consensus        24 ~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
                      +++.+.+..+|.|+++.++..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.              
T Consensus       115 ~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~--------------  180 (234)
T cd03251         115 ANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA--------------  180 (234)
T ss_pred             cCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH--------------
Confidence            455667778888899999999999999999999999999999999999999999999988877663              


Q ss_pred             cchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCC
Q psy12535        104 RWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD  172 (209)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~  172 (209)
                                         +++.. +++|||++||+++.+..||+|++|++|++++.|+++++......
T Consensus       181 -------------------l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~  229 (234)
T cd03251         181 -------------------LERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGV  229 (234)
T ss_pred             -------------------HHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcc
Confidence                               22222 47899999999999877999999999999999999988765443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=7.6e-25  Score=183.03  Aligned_cols=96  Identities=27%  Similarity=0.511  Sum_probs=84.9

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      ..+..|||||+||++|||||+.+|+++|+|||||+|||+....++.                                 .
T Consensus       148 ~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLk---------------------------------v  194 (256)
T COG4598         148 AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK---------------------------------V  194 (256)
T ss_pred             cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHH---------------------------------H
Confidence            4456999999999999999999999999999999999976555543                                 5


Q ss_pred             hhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                      ++.+..+|+|.++|||.+.+.+. +.+|++|++|.|.++|+|++++.+..
T Consensus       195 ~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~  244 (256)
T COG4598         195 MQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQ  244 (256)
T ss_pred             HHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCC
Confidence            56667789999999999999987 59999999999999999999997753

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=4.5e-25  Score=190.71  Aligned_cols=97  Identities=30%  Similarity=0.475  Sum_probs=78.9

Q ss_pred             CCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccc
Q psy12535         16 NSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLH   95 (209)
Q Consensus        16 ~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~   95 (209)
                      +..++++.++|..+-+..|.           +|||||||||+|||||+.+|+|||||||+++||..++..+.+.+...  
T Consensus       110 ~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~l--  176 (248)
T COG1116         110 RAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL--  176 (248)
T ss_pred             HHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHH--
Confidence            34445555666666666664           99999999999999999999999999999999999999987754322  


Q ss_pred             cCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheec-ccceEEEeecc
Q psy12535         96 TGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKG  155 (209)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G  155 (209)
                                                    +...++|||+||||++++- .+|||++|.++
T Consensus       177 ------------------------------w~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         177 ------------------------------WEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             ------------------------------HHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence                                          2335789999999998754 58999999984

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.90  E-value=6.3e-25  Score=197.95  Aligned_cols=115  Identities=30%  Similarity=0.497  Sum_probs=92.6

Q ss_pred             CCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhc
Q psy12535         14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG   93 (209)
Q Consensus        14 ~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~   93 (209)
                      +.++.++++..++...+++.|           .+|||||||||||||||+++|+++|||||+|+||++.+..+...+...
T Consensus       111 ~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l  179 (338)
T COG3839         111 DKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL  179 (338)
T ss_pred             HHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH
Confidence            344555666666666666655           499999999999999999999999999999999999888876653221


Q ss_pred             cccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehhe-ecccceEEEeeccceeecchhhHHhhccC
Q psy12535         94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                       +                               ..-+.|+|+||||... +..+|||++|++|+|.+.|++.++..+..
T Consensus       180 -h-------------------------------~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~  226 (338)
T COG3839         180 -H-------------------------------ERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA  226 (338)
T ss_pred             -H-------------------------------HhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence             1                               1237899999998766 56789999999999999999999987643

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.90  E-value=6.9e-25  Score=198.23  Aligned_cols=101  Identities=27%  Similarity=0.430  Sum_probs=86.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|++||||||||+||+.+...+++.                          
T Consensus       129 gL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l--------------------------  182 (343)
T TIGR02314       129 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL--------------------------  182 (343)
T ss_pred             CCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            344445566779999999999999999999999999999999999998888663                          


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             +++...+ +.|||+|||+++.+.. ||+|++|++|+|++.|++++++.+
T Consensus       183 -------L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~  231 (343)
T TIGR02314       183 -------LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH  231 (343)
T ss_pred             -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence                   3333333 7899999999999864 899999999999999999999764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.90  E-value=7.7e-25  Score=187.78  Aligned_cols=83  Identities=31%  Similarity=0.541  Sum_probs=73.5

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      .++.+|||||||||||||||+++|+|+|.||||++||..+.+.+++.                                 
T Consensus       138 ~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l---------------------------------  184 (226)
T COG1136         138 KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL---------------------------------  184 (226)
T ss_pred             CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH---------------------------------
Confidence            45679999999999999999999999999999999999999999773                                 


Q ss_pred             hhhhcc-ccceeeeeeeehheecccceEEEeecccee
Q psy12535        123 VRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVE  158 (209)
Q Consensus       123 ~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~  158 (209)
                      +..... .|+|||+||||......|||++.|++|++.
T Consensus       185 l~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~  221 (226)
T COG1136         185 LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE  221 (226)
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence            333333 488999999999999999999999999843

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.90  E-value=1.6e-24  Score=182.86  Aligned_cols=115  Identities=28%  Similarity=0.517  Sum_probs=98.9

Q ss_pred             eeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCC
Q psy12535         21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR  100 (209)
Q Consensus        21 ~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~  100 (209)
                      ++.+++.+++..+|.|+++.++..+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.+          
T Consensus       113 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l----------  182 (229)
T cd03254         113 AKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL----------  182 (229)
T ss_pred             HHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH----------
Confidence            3445666778888889999999999999999999999999999999999999999999999888776632          


Q ss_pred             ccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                                             .... +++|||++||+++.+..||+|++|++|++++.|+.+++...
T Consensus       183 -----------------------~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~  227 (229)
T cd03254         183 -----------------------EKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK  227 (229)
T ss_pred             -----------------------HHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence                                   2222 47899999999998877999999999999999998887654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.90  E-value=7.6e-25  Score=207.90  Aligned_cols=112  Identities=21%  Similarity=0.309  Sum_probs=96.4

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .+++...++++.+++++++..+|.||+|.     .+|||||||||+||||++++|+|||||||||+||+.+.+.+.+.++
T Consensus       440 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~  514 (555)
T TIGR01194       440 ASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELL  514 (555)
T ss_pred             hhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            34455667888889999999999999985     6899999999999999999999999999999999999888876432


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF  160 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~  160 (209)
                      ..                                ...+++|+|+|||+++.+..+|+|++|++|++++.
T Consensus       515 ~~--------------------------------~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       515 PD--------------------------------LKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             HH--------------------------------HHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            11                                12357899999999999889999999999999864

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.90  E-value=2.8e-24  Score=182.67  Aligned_cols=114  Identities=34%  Similarity=0.587  Sum_probs=98.4

Q ss_pred             eeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCcc
Q psy12535         23 VCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD  102 (209)
Q Consensus        23 ~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~  102 (209)
                      .+++.+++..+|.|+++.++..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.             
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~-------------  181 (238)
T cd03249         115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEA-------------  181 (238)
T ss_pred             HcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-------------
Confidence            3455666778888899999999999999999999999999999999999999999999988777663             


Q ss_pred             ccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535        103 SRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                          ++... +++|||++||+++.+..||+|++|++|++++.|+.+++....
T Consensus       182 --------------------l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~  228 (238)
T cd03249         182 --------------------LDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK  228 (238)
T ss_pred             --------------------HHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence                                22333 578999999999988889999999999999999988887544

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=3e-24  Score=182.38  Aligned_cols=101  Identities=28%  Similarity=0.357  Sum_probs=84.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                          
T Consensus       125 ~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  178 (235)
T cd03261         125 GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL--------------------------  178 (235)
T ss_pred             CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH--------------------------
Confidence            333444566779999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             ++.... .++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       179 -------l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  227 (235)
T cd03261         179 -------IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS  227 (235)
T ss_pred             -------HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence                   223233 37899999999998764 899999999999999999888654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.89  E-value=1.7e-24  Score=180.79  Aligned_cols=113  Identities=28%  Similarity=0.468  Sum_probs=94.2

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      ++++.++...|+..+..++|.           +||||||||+||||+|+++-+||+||||+|+|||..+..+...+... 
T Consensus       108 ~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l-  175 (231)
T COG3840         108 EKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQL-  175 (231)
T ss_pred             HHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHH-
Confidence            344556666778888888886           99999999999999999999999999999999998887776632211 


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      +                               ..++.|+++|||.++.+.. +|+++++++|+|.+.|+.++++...
T Consensus       176 ~-------------------------------~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~  221 (231)
T COG3840         176 C-------------------------------DERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK  221 (231)
T ss_pred             H-------------------------------HhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence            1                               2368899999999998765 7999999999999999999987643

>PTZ00243 ABC transporter; Provisional

Probab=99.89  E-value=1.1e-24  Score=227.22  Aligned_cols=122  Identities=49%  Similarity=0.767  Sum_probs=109.8

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      +++.++++.|++.++++.+|.|++|.+|+++.+|||||||||+|||||+.+|+|||||||||+||+.+.+.+++.++.. 
T Consensus       750 ~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~-  828 (1560)
T PTZ00243        750 ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-  828 (1560)
T ss_pred             HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-
Confidence            3456677889999999999999999999999999999999999999999999999999999999999888888765321 


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                                                      ..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.++
T Consensus       829 --------------------------------~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~  871 (1560)
T PTZ00243        829 --------------------------------ALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT  871 (1560)
T ss_pred             --------------------------------hhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence                                            1247899999999999988999999999999999999998764

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.89  E-value=3.6e-24  Score=184.88  Aligned_cols=117  Identities=27%  Similarity=0.459  Sum_probs=100.6

Q ss_pred             eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535         20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP   99 (209)
Q Consensus        20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~   99 (209)
                      +++.+++.+.+..+|.|+++.+++.+..||+||+||++|||||+.+|++|||||||++||+.+...+++.          
T Consensus       129 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~----------  198 (257)
T cd03288         129 ALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV----------  198 (257)
T ss_pred             HHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH----------
Confidence            3344566777888898999999999999999999999999999999999999999999999887766553          


Q ss_pred             CccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535        100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                             ++.. ..++|||++||+++.+..+|+|++|++|++++.|+++++....
T Consensus       199 -----------------------l~~~-~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~  245 (257)
T cd03288         199 -----------------------VMTA-FADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE  245 (257)
T ss_pred             -----------------------HHHh-cCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence                                   2222 2478999999999998889999999999999999999987653

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=4.1e-24  Score=185.96  Aligned_cols=94  Identities=32%  Similarity=0.522  Sum_probs=82.0

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      .+...+|||||+|||.|||||+.+|++|||||||+|+|+.++..+++                                 
T Consensus       134 ~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~---------------------------------  180 (254)
T COG1121         134 DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD---------------------------------  180 (254)
T ss_pred             CCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH---------------------------------
Confidence            34556999999999999999999999999999999999998888876                                 


Q ss_pred             hhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      +++++..+|+||++||||++.+. .+|+|+.| |+++...|+++++...
T Consensus       181 lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~  228 (254)
T COG1121         181 LLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE  228 (254)
T ss_pred             HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH
Confidence            44555556999999999999876 58999999 5789999999998754

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=5.7e-24  Score=191.06  Aligned_cols=102  Identities=26%  Similarity=0.420  Sum_probs=88.5

Q ss_pred             CCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         35 SGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        35 ~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      .+.++.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+. +                       
T Consensus       213 ~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i-----------------------  268 (329)
T PRK14257        213 DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL-I-----------------------  268 (329)
T ss_pred             chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-H-----------------------
Confidence            3456778999999999999999999999999999999999999999988876552 2                       


Q ss_pred             cccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                               +.. .+++|+|+|||+++.+.. ||+|++|++|+|++.|++++++.+.
T Consensus       269 ---------~~l-~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~  315 (329)
T PRK14257        269 ---------LEL-KKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP  315 (329)
T ss_pred             ---------HHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence                     222 246899999999999876 8999999999999999999997643

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.89  E-value=7.7e-25  Score=199.35  Aligned_cols=102  Identities=25%  Similarity=0.415  Sum_probs=87.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++...++.+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.+..                       
T Consensus       118 gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~-----------------------  174 (363)
T TIGR01186       118 GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKK-----------------------  174 (363)
T ss_pred             CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-----------------------
Confidence            445556677789999999999999999999999999999999999999888774432                       


Q ss_pred             ccchhhhhhhhc-cccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSF-LKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                .. ..++|||+|||+++.+ ..+|+|++|++|++++.|+++++..+.
T Consensus       175 ----------l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p  221 (363)
T TIGR01186       175 ----------LQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP  221 (363)
T ss_pred             ----------HHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence                      22 2378999999999986 458999999999999999999987653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.89  E-value=1.3e-24  Score=196.79  Aligned_cols=112  Identities=29%  Similarity=0.444  Sum_probs=90.5

Q ss_pred             CCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccc
Q psy12535         16 NSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLH   95 (209)
Q Consensus        16 ~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~   95 (209)
                      ++.++++..++.++-.+.|           .+|||||||||||||||+.+|+|||||||+|+||.+.+.++..++..   
T Consensus       116 rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~---  181 (352)
T COG3842         116 RVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKE---  181 (352)
T ss_pred             HHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHH---
Confidence            3444555555555555544           59999999999999999999999999999999999988888665332   


Q ss_pred             cCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehhe-ecccceEEEeeccceeecchhhHHhhcc
Q psy12535         96 TGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                                +.   ..-|.|.|+||||.+. +..+|||++|++|+|.+.|+++++....
T Consensus       182 --------------------------lq---~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P  228 (352)
T COG3842         182 --------------------------LQ---RELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP  228 (352)
T ss_pred             --------------------------HH---HhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence                                      11   2248999999998876 5678999999999999999999998654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=3.3e-24  Score=190.20  Aligned_cols=109  Identities=30%  Similarity=0.450  Sum_probs=88.5

Q ss_pred             CcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcccc
Q psy12535         17 SRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT   96 (209)
Q Consensus        17 ~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~   96 (209)
                      ..+.++.|.|...-++.|           .+|||||||||||||||+.+|++||||||+++||.+..+.+...+.     
T Consensus       118 v~elL~lvqL~~la~ryP-----------~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr-----  181 (345)
T COG1118         118 VEELLRLVQLEGLADRYP-----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR-----  181 (345)
T ss_pred             HHHHHHHhcccchhhcCc-----------hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHH-----
Confidence            334455566655555555           4999999999999999999999999999999999988877755432     


Q ss_pred             CCCCccccchhhhhcccccccchhhhhhhhc-cccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhc
Q psy12535         97 GVPRFDSRWGRSFFGSALGVRGALSLVRTSF-LKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                                                  +.. +-+.|+|+||||.+++ +.+|||++|++|+|.+.|+++++...
T Consensus       182 ----------------------------~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~  228 (345)
T COG1118         182 ----------------------------KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH  228 (345)
T ss_pred             ----------------------------HHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence                                        222 2378999999999876 56899999999999999999999764

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.89  E-value=5.5e-24  Score=178.68  Aligned_cols=109  Identities=33%  Similarity=0.563  Sum_probs=92.1

Q ss_pred             ceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCC
Q psy12535         19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGV   98 (209)
Q Consensus        19 ~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~   98 (209)
                      ++++.+++.+.+...|.|++|.+.....+||||||||++||||++.+|++|||||||++||+.+...+++.+        
T Consensus       112 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l--------  183 (220)
T cd03245         112 RAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERL--------  183 (220)
T ss_pred             HHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH--------
Confidence            344555676777888889999998889999999999999999999999999999999999999888886632        


Q ss_pred             CCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecc
Q psy12535         99 PRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG  161 (209)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G  161 (209)
                                               +.... ++|||++||+++.+..+|+|++|++|++++.|
T Consensus       184 -------------------------~~~~~-~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         184 -------------------------RQLLG-DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             -------------------------HHhcC-CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence                                     22222 47999999999987778999999999997654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=3e-24  Score=194.74  Aligned_cols=102  Identities=27%  Similarity=0.442  Sum_probs=85.8

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+|||||||||+||+.++..+.+.+                         
T Consensus       123 gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-------------------------  177 (356)
T PRK11650        123 ELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEI-------------------------  177 (356)
T ss_pred             CChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence            3444556666799999999999999999999999999999999999888887643                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              +.... .+.|+|+|||+++.+. .+|+|++|++|++++.|+++++..+.
T Consensus       178 --------~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p  226 (356)
T PRK11650        178 --------QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP  226 (356)
T ss_pred             --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence                    22222 3789999999998765 58999999999999999999997653

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.89  E-value=3.8e-24  Score=194.63  Aligned_cols=102  Identities=30%  Similarity=0.443  Sum_probs=86.2

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++....+.+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+                         
T Consensus       126 gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-------------------------  180 (362)
T TIGR03258       126 GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEI-------------------------  180 (362)
T ss_pred             CCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH-------------------------
Confidence            3444556667799999999999999999999999999999999999888886643                         


Q ss_pred             ccchhhhhhhhccc--cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFLK--EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~~--~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              +....+  +.|+|+|||+++.+. .+|+|++|++|++++.|+++++....
T Consensus       181 --------~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p  230 (362)
T TIGR03258       181 --------AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP  230 (362)
T ss_pred             --------HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence                    222233  789999999999865 58999999999999999999998653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.88  E-value=7.9e-24  Score=199.81  Aligned_cols=102  Identities=24%  Similarity=0.397  Sum_probs=88.2

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+||||||||+.||+||+.+|++||+||||++||+.++.++.+.                                
T Consensus       149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l--------------------------------  196 (539)
T COG1123         149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL--------------------------------  196 (539)
T ss_pred             ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH--------------------------------
Confidence            446679999999999999999999999999999999999999888773                                


Q ss_pred             hhhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhc
Q psy12535        122 LVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQL  176 (209)
Q Consensus       122 ~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~  176 (209)
                       ++.+. ..|.++|+||||+..++. ||||+||++|++++.|++++++++.. .|+..
T Consensus       197 -lk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~  253 (539)
T COG1123         197 -LKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRG  253 (539)
T ss_pred             -HHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHH
Confidence             33333 358999999999999876 89999999999999999999998765 35433

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.88  E-value=1.3e-23  Score=178.14  Aligned_cols=100  Identities=29%  Similarity=0.416  Sum_probs=85.8

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++...+..+.+||||||||++|||||+.+|++|||||||++||+.+...+++.                          
T Consensus       132 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  185 (236)
T cd03219         132 GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL--------------------------  185 (236)
T ss_pred             CccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            455566778889999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                             +......++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       186 -------l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         186 -------IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             -------HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence                   22223357899999999999865 89999999999999999988754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.88  E-value=1.3e-23  Score=178.48  Aligned_cols=99  Identities=23%  Similarity=0.391  Sum_probs=84.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       133 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  186 (241)
T cd03256         133 GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL--------------------------  186 (241)
T ss_pred             CChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH--------------------------
Confidence            344455667789999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                             ++.... .++|||++||+++.+. .+|+|++|++|++++.|+++++.
T Consensus       187 -------l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         187 -------LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence                   222222 3789999999999987 58999999999999999998864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.88  E-value=1.3e-23  Score=198.25  Aligned_cols=104  Identities=25%  Similarity=0.415  Sum_probs=88.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .+.+++.+||||||||++|||||+.+|+++|+|||||+||+..+.++.+.                              
T Consensus       422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL------------------------------  471 (539)
T COG1123         422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL------------------------------  471 (539)
T ss_pred             HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH------------------------------
Confidence            45566679999999999999999999999999999999999998888773                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQL  176 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~  176 (209)
                         ++++.. -|.|.|+||||+..++. ||||++|++|+|++.|+.++++++.. .|++.
T Consensus       472 ---l~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~  528 (539)
T COG1123         472 ---LKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRK  528 (539)
T ss_pred             ---HHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHH
Confidence               223222 38899999999999986 89999999999999999999987643 45443

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.5e-24  Score=195.02  Aligned_cols=101  Identities=27%  Similarity=0.379  Sum_probs=85.2

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +..+....+.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+.                         
T Consensus       126 l~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~-------------------------  180 (351)
T PRK11432        126 LAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR-------------------------  180 (351)
T ss_pred             CchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH-------------------------
Confidence            3344556677999999999999999999999999999999999998888766432                         


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhcc
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              .... .+.|+|+|||+++.+ ..+|+|++|++|+|++.|+++++....
T Consensus       181 --------~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p  228 (351)
T PRK11432        181 --------ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP  228 (351)
T ss_pred             --------HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence                    2222 378999999999986 458999999999999999999997653

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.4e-23  Score=188.22  Aligned_cols=98  Identities=20%  Similarity=0.356  Sum_probs=85.4

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .++..+.+|||||+|||+|||||+.+|+|||+||||++||+.++..+++.                              
T Consensus       146 ~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~l------------------------------  195 (326)
T PRK11022        146 RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL------------------------------  195 (326)
T ss_pred             HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH------------------------------
Confidence            45667889999999999999999999999999999999999988888663                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                         +++... .+.|+|+|||+++.+. .+|+|++|.+|+|++.|++++++.+.
T Consensus       196 ---L~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p  245 (326)
T PRK11022        196 ---LLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAP  245 (326)
T ss_pred             ---HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence               333332 4789999999999985 58999999999999999999998754

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.88  E-value=1.1e-23  Score=177.03  Aligned_cols=109  Identities=32%  Similarity=0.547  Sum_probs=94.2

Q ss_pred             eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535         20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP   99 (209)
Q Consensus        20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~   99 (209)
                      +++..++.+++..+|.|+++.++..+..||+||+||++|||||+.+|+++||||||++||+.+...+.+.+         
T Consensus       112 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l---------  182 (221)
T cd03244         112 ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI---------  182 (221)
T ss_pred             HHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH---------
Confidence            44455677788888999999999999999999999999999999999999999999999999888776632         


Q ss_pred             CccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535        100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~  162 (209)
                                              +... ++.|||++||+++.+..+|++++|++|++++.|+
T Consensus       183 ------------------------~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         183 ------------------------REAF-KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             ------------------------HHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence                                    2222 3579999999999988899999999999998775

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3e-24  Score=190.83  Aligned_cols=97  Identities=24%  Similarity=0.417  Sum_probs=83.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.....+.+.                              
T Consensus       158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~------------------------------  207 (305)
T PRK13651        158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI------------------------------  207 (305)
T ss_pred             hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH------------------------------
Confidence            45667789999999999999999999999999999999999888777663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++.....++|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus       208 ---l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        208 ---FDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD  255 (305)
T ss_pred             ---HHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence               2232335889999999999875 5899999999999999999998754

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.88  E-value=1.6e-23  Score=188.18  Aligned_cols=98  Identities=20%  Similarity=0.358  Sum_probs=85.4

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .++..+.+|||||+|||+|||||+.+|+|||+||||++||+.++..+.+.                              
T Consensus       154 ~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~l------------------------------  203 (330)
T PRK09473        154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL------------------------------  203 (330)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence            35678889999999999999999999999999999999999988888663                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                         ++.... .+.|+|+|||+++.+. .+|+|++|++|+|++.|+++++..+.
T Consensus       204 ---L~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p  253 (330)
T PRK09473        204 ---LNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQP  253 (330)
T ss_pred             ---HHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence               222222 3789999999999986 58999999999999999999998754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.6e-23  Score=187.75  Aligned_cols=97  Identities=19%  Similarity=0.348  Sum_probs=84.0

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||+|||+|||||+.+|+||||||||++||+.++..+.+.                               
T Consensus       152 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l-------------------------------  200 (330)
T PRK15093        152 MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRL-------------------------------  200 (330)
T ss_pred             HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHH-------------------------------
Confidence            3556679999999999999999999999999999999999988888663                               


Q ss_pred             hhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        121 SLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       121 ~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                        ++.... .+.|||+|||+++.+.. +|+|++|++|+|++.|+.++++.+.
T Consensus       201 --L~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p  250 (330)
T PRK15093        201 --LTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTP  250 (330)
T ss_pred             --HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence              333333 37899999999999864 8999999999999999999987653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.88  E-value=1.7e-23  Score=185.02  Aligned_cols=101  Identities=23%  Similarity=0.395  Sum_probs=85.9

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|++|||||||+|||+.+...+++.                          
T Consensus       113 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~--------------------------  166 (302)
T TIGR01188       113 ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY--------------------------  166 (302)
T ss_pred             CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH--------------------------
Confidence            334445667789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             ++....+|+|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       167 -------l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  214 (302)
T TIGR01188       167 -------IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR  214 (302)
T ss_pred             -------HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence                   33333358899999999999865 899999999999999999998764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=7.7e-24  Score=189.99  Aligned_cols=97  Identities=29%  Similarity=0.409  Sum_probs=84.2

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||+|||+|||||+.+|+|||+||||++||..++..+++.+                              
T Consensus       148 ~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL------------------------------  197 (327)
T PRK11308        148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLM------------------------------  197 (327)
T ss_pred             hcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHH------------------------------
Confidence            34566799999999999999999999999999999999999888887633                              


Q ss_pred             hhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        121 SLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       121 ~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                         .+... .+.|+|+|||+++.+.. +|+|++|.+|+|++.|+.++++++.
T Consensus       198 ---~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p  246 (327)
T PRK11308        198 ---MDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP  246 (327)
T ss_pred             ---HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCC
Confidence               22222 37899999999999875 8999999999999999999998754

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4e-24  Score=187.12  Aligned_cols=100  Identities=27%  Similarity=0.412  Sum_probs=84.5

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ++..+...+.+||||||||++|||||+.+|+||||||||++||+.+...+++.                           
T Consensus       130 L~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~---------------------------  182 (279)
T PRK13650        130 MQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT---------------------------  182 (279)
T ss_pred             CHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH---------------------------
Confidence            33344556679999999999999999999999999999999999888877663                           


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                            ++.... .++|||++||+++.+..||+|++|++|+++..|+++++...
T Consensus       183 ------l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        183 ------IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             ------HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence                  223233 38899999999998877999999999999999999988754

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2e-23  Score=186.73  Aligned_cols=98  Identities=22%  Similarity=0.446  Sum_probs=84.8

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.+                            
T Consensus       168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L----------------------------  219 (320)
T PRK13631        168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI----------------------------  219 (320)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHH----------------------------
Confidence            4567788899999999999999999999999999999999999888886632                            


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                           .....+++|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus       220 -----~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~  266 (320)
T PRK13631        220 -----LDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD  266 (320)
T ss_pred             -----HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence                 222335889999999999874 6899999999999999999988653

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.88  E-value=7.9e-24  Score=190.27  Aligned_cols=98  Identities=23%  Similarity=0.409  Sum_probs=84.8

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||+|||+|||||+.+|+|||+||||++||+.++..+++.                              
T Consensus       154 ~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l------------------------------  203 (331)
T PRK15079        154 LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL------------------------------  203 (331)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence            34566779999999999999999999999999999999999988888763                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                         ++.... .+.|+|+|||+++.+.. +|+|++|.+|+|++.|++++++.+.
T Consensus       204 ---L~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~  253 (331)
T PRK15079        204 ---LQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP  253 (331)
T ss_pred             ---HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence               222222 37899999999999875 8999999999999999999998654

>KOG0054|consensus

Probab=99.88  E-value=1.6e-23  Score=213.84  Aligned_cols=137  Identities=27%  Similarity=0.479  Sum_probs=120.9

Q ss_pred             CCccccCCC--CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhh
Q psy12535          2 GPILAPMGP--GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD   79 (209)
Q Consensus         2 g~~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD   79 (209)
                      |++..+..|  +++|+.++++++.|+|.+.+..+|.|+++.|.|+|.++|-||||.++|||||+++++||+|||+|+++|
T Consensus      1228 GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1228 GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred             CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCC
Confidence            455555544  478889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceee
Q psy12535         80 AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEA  159 (209)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~  159 (209)
                      +.+...+-+.                                 +++ .-+++|||.|.|+++.+-.+|||+||++|+|+|
T Consensus      1308 ~~TD~lIQ~t---------------------------------IR~-~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1308 PETDALIQKT---------------------------------IRE-EFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred             hHHHHHHHHH---------------------------------HHH-HhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence            9887666443                                 222 236899999999999999999999999999999


Q ss_pred             cchhhHHhhccCC
Q psy12535        160 FGTTTQLLASGLD  172 (209)
Q Consensus       160 ~G~~~~l~~~~~~  172 (209)
                      .|+|.+|+++...
T Consensus      1354 fdsP~~Ll~~~~S 1366 (1381)
T KOG0054|consen 1354 FDSPAELLSDKDS 1366 (1381)
T ss_pred             cCChHHHHhCCcc
Confidence            9999999987543

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.88  E-value=1.7e-23  Score=184.33  Aligned_cols=124  Identities=44%  Similarity=0.794  Sum_probs=102.3

Q ss_pred             eeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCC
Q psy12535         21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR  100 (209)
Q Consensus        21 ~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~  100 (209)
                      ++.+++.+.+..+|.++++.+++.+..||||||||++|||||+.+|++|||||||++||+.+...+++.++..       
T Consensus       133 l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~-------  205 (282)
T cd03291         133 VKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCK-------  205 (282)
T ss_pred             HHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHH-------
Confidence            3445566677788888888999999999999999999999999999999999999999998877776533211       


Q ss_pred             ccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhcc
Q psy12535        101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL  177 (209)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~  177 (209)
                                                ...+.|||++||+++.+..||+|++|++|++++.|+++++.+....+.+.+
T Consensus       206 --------------------------~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~  256 (282)
T cd03291         206 --------------------------LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL  256 (282)
T ss_pred             --------------------------hhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence                                      123689999999999888899999999999999999999876544454333

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.88  E-value=9.7e-24  Score=191.25  Aligned_cols=101  Identities=32%  Similarity=0.439  Sum_probs=85.2

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +......++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+                          
T Consensus       126 L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L--------------------------  179 (353)
T PRK10851        126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL--------------------------  179 (353)
T ss_pred             CchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH--------------------------
Confidence            334455667799999999999999999999999999999999999888886632                          


Q ss_pred             cchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        117 RGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                             ++...+ ++|+|+|||+++.+. .+|+|++|++|+|++.|+++++..+.
T Consensus       180 -------~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p  228 (353)
T PRK10851        180 -------RQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP  228 (353)
T ss_pred             -------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence                   222223 789999999999865 58999999999999999999997653

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.88  E-value=2.2e-23  Score=188.91  Aligned_cols=102  Identities=30%  Similarity=0.423  Sum_probs=87.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.....+.+.+|||||||||+|||||+.+|++||||||||+||+.++..+.+.+.                        
T Consensus       123 ~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~------------------------  178 (353)
T TIGR03265       123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIR------------------------  178 (353)
T ss_pred             CCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH------------------------
Confidence            45556677788999999999999999999999999999999999998888866432                        


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                               +... .+.|+|+|||+++.+. .+|+|++|++|++++.|+++++....
T Consensus       179 ---------~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p  226 (353)
T TIGR03265       179 ---------QLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP  226 (353)
T ss_pred             ---------HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence                     2222 3789999999999865 58999999999999999999998653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.88  E-value=2.3e-23  Score=185.06  Aligned_cols=97  Identities=31%  Similarity=0.504  Sum_probs=84.0

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .......+||||||||++|||||+.+|++|||||||+|||+.++..+++.                              
T Consensus       131 ~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~------------------------------  180 (306)
T PRK13537        131 KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER------------------------------  180 (306)
T ss_pred             HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH------------------------------
Confidence            33455679999999999999999999999999999999999988887663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++....+|+|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       181 ---l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        181 ---LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             ---HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence               33333458999999999999865 899999999999999999999755

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3e-23  Score=182.46  Aligned_cols=98  Identities=21%  Similarity=0.462  Sum_probs=84.6

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.....+.+||||||||++|||||+.+|+||||||||++||+.+...+++.                             
T Consensus       136 ~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~-----------------------------  186 (287)
T PRK13637        136 DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK-----------------------------  186 (287)
T ss_pred             hhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-----------------------------
Confidence            456677889999999999999999999999999999999999988888663                             


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          ++.... .++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus       187 ----l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  235 (287)
T PRK13637        187 ----IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE  235 (287)
T ss_pred             ----HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence                223233 3789999999999875 5899999999999999999998653

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.88  E-value=2.9e-23  Score=176.71  Aligned_cols=99  Identities=25%  Similarity=0.414  Sum_probs=83.2

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       134 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  187 (243)
T TIGR02315       134 GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY--------------------------  187 (243)
T ss_pred             CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            344455667789999999999999999999999999999999999888777653                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                             ++.... .++|||++||+++.+. .||+|++|++|++++.|+++++.
T Consensus       188 -------l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (243)
T TIGR02315       188 -------LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD  234 (243)
T ss_pred             -------HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence                   222222 3789999999999985 58999999999999999988863

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.88  E-value=2.9e-23  Score=176.94  Aligned_cols=101  Identities=34%  Similarity=0.446  Sum_probs=84.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       125 ~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~--------------------------  178 (239)
T cd03296         125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW--------------------------  178 (239)
T ss_pred             CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            344455667789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             +..... .++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       179 -------l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  227 (239)
T cd03296         179 -------LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH  227 (239)
T ss_pred             -------HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence                   222223 3789999999999875 4899999999999999999888643

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.88  E-value=3.5e-23  Score=176.10  Aligned_cols=101  Identities=28%  Similarity=0.427  Sum_probs=87.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.+                         
T Consensus       121 gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-------------------------  175 (236)
T TIGR03864       121 GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV-------------------------  175 (236)
T ss_pred             CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH-------------------------
Confidence            5556667788899999999999999999999999999999999999888887632                         


Q ss_pred             ccchhhhhhhhc-cccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              .+.. .+++|+|++||+++.+..+|+|++|++|++++.|+++++..+
T Consensus       176 --------~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       176 --------RALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             --------HHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence                    2222 247899999999998877999999999999999999888765

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.88  E-value=3.4e-23  Score=175.12  Aligned_cols=100  Identities=27%  Similarity=0.377  Sum_probs=84.7

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       122 ~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~--------------------------  175 (232)
T cd03218         122 HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKI--------------------------  175 (232)
T ss_pred             CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH--------------------------
Confidence            455556777889999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                             ++.....++|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus       176 -------l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         176 -------IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             -------HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence                   2222335789999999998765 589999999999999999888753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.87  E-value=1.9e-23  Score=191.18  Aligned_cols=96  Identities=27%  Similarity=0.460  Sum_probs=83.5

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      +.+.++|||||||+|||||++-+|++++||||||+||...+.++.+.                                 
T Consensus       422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L---------------------------------  468 (534)
T COG4172         422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL---------------------------------  468 (534)
T ss_pred             cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH---------------------------------
Confidence            33459999999999999999999999999999999999888888763                                 


Q ss_pred             hhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        123 VRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       123 ~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                      ++.+. +.+-+-++||||+..++. ||+|+||++|+|+++|+.++++++..
T Consensus       469 Lr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~  519 (534)
T COG4172         469 LRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQ  519 (534)
T ss_pred             HHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCC
Confidence            33332 247799999999999975 89999999999999999999998764

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.87  E-value=1.3e-23  Score=191.89  Aligned_cols=102  Identities=27%  Similarity=0.412  Sum_probs=85.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+                         
T Consensus       133 ~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L-------------------------  187 (375)
T PRK09452        133 QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL-------------------------  187 (375)
T ss_pred             CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH-------------------------
Confidence            3444455666799999999999999999999999999999999999888876643                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              +.... .+.|+|+|||+++.+. .+|+|++|++|+|++.|+++++....
T Consensus       188 --------~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p  236 (375)
T PRK09452        188 --------KALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP  236 (375)
T ss_pred             --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence                    22222 3789999999999864 58999999999999999999997653

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.87  E-value=2.8e-23  Score=175.60  Aligned_cols=101  Identities=22%  Similarity=0.370  Sum_probs=88.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      ++...+..+..+||-||||||+|||||+++|+++||||||||||..+.+.+.+                           
T Consensus       122 ~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~d---------------------------  174 (245)
T COG4555         122 QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD---------------------------  174 (245)
T ss_pred             ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHH---------------------------
Confidence            45556677888999999999999999999999999999999999987776655                           


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                            .+..+..+|++||++||.++.++ .||+|++|++|+++..|+.+++.+.
T Consensus       175 ------fi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r  223 (245)
T COG4555         175 ------FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR  223 (245)
T ss_pred             ------HHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence                  34444567999999999999998 6999999999999999999998754

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.5e-23  Score=183.01  Aligned_cols=95  Identities=28%  Similarity=0.415  Sum_probs=80.6

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++|||||+.+|++|||||||++||+.+...+++.                              
T Consensus       131 ~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------  180 (274)
T PRK13647        131 FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI------------------------------  180 (274)
T ss_pred             HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH------------------------------
Confidence            34455569999999999999999999999999999999999988888663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                         ++.....++|||++||+++.+. .||+|++|++|++++.|+++++.
T Consensus       181 ---l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  226 (274)
T PRK13647        181 ---LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT  226 (274)
T ss_pred             ---HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence               2232334789999999999885 58999999999999999987653

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.87  E-value=5e-23  Score=176.13  Aligned_cols=101  Identities=27%  Similarity=0.500  Sum_probs=85.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       133 gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------  186 (250)
T PRK11264        133 GLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT--------------------------  186 (250)
T ss_pred             CCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH--------------------------
Confidence            444445667889999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             +.....+++|||++||+++.+.. +|+|++|++|++++.|+++++...
T Consensus       187 -------l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  234 (250)
T PRK11264        187 -------IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD  234 (250)
T ss_pred             -------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence                   22223347899999999998864 899999999999999999988653

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.2e-23  Score=180.99  Aligned_cols=97  Identities=27%  Similarity=0.440  Sum_probs=83.4

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+..||||||||++|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       137 ~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~------------------------------  186 (288)
T PRK13643        137 FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL------------------------------  186 (288)
T ss_pred             hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH------------------------------
Confidence            34567789999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +......++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus       187 ---l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  234 (288)
T PRK13643        187 ---FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE  234 (288)
T ss_pred             ---HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence               2222335889999999999875 5899999999999999999998653

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.87  E-value=4e-23  Score=182.72  Aligned_cols=100  Identities=28%  Similarity=0.460  Sum_probs=85.0

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                           
T Consensus       125 l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~---------------------------  177 (303)
T TIGR01288       125 LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER---------------------------  177 (303)
T ss_pred             ChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH---------------------------
Confidence            33344566779999999999999999999999999999999999988877663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                            ++....+++|||++||+++.+. .||+|++|++|+++..|+++++...
T Consensus       178 ------l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  225 (303)
T TIGR01288       178 ------LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE  225 (303)
T ss_pred             ------HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence                  2333335889999999999986 4899999999999999999998754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.87  E-value=4.2e-23  Score=173.27  Aligned_cols=98  Identities=28%  Similarity=0.477  Sum_probs=83.0

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      .......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                            
T Consensus       123 ~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~----------------------------  174 (222)
T cd03224         123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA----------------------------  174 (222)
T ss_pred             hhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHH----------------------------
Confidence            3445667789999999999999999999999999999999999988887663                            


Q ss_pred             chhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                           ++.....++|||++||+++.+.. +|+|++|++|++++.|+++++..
T Consensus       175 -----l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  221 (222)
T cd03224         175 -----IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA  221 (222)
T ss_pred             -----HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence                 22223357899999999998754 89999999999999998887653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.87  E-value=5e-23  Score=184.28  Aligned_cols=101  Identities=28%  Similarity=0.437  Sum_probs=85.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+                         
T Consensus        89 ~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l-------------------------  143 (325)
T TIGR01187        89 QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL-------------------------  143 (325)
T ss_pred             CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH-------------------------
Confidence            4445556677899999999999999999999999999999999999888876632                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              ++... .++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus       144 --------~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~  191 (325)
T TIGR01187       144 --------KTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE  191 (325)
T ss_pred             --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence                    22222 3789999999999875 5899999999999999999998764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.87  E-value=4.5e-23  Score=187.71  Aligned_cols=101  Identities=28%  Similarity=0.435  Sum_probs=85.2

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.+                         
T Consensus       122 gL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L-------------------------  176 (369)
T PRK11000        122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI-------------------------  176 (369)
T ss_pred             CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence            3444556667799999999999999999999999999999999999888876632                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              ++... .+.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus       177 --------~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        177 --------SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             --------HHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence                    22222 3789999999999875 5899999999999999999998764

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.87  E-value=4.3e-23  Score=173.65  Aligned_cols=97  Identities=27%  Similarity=0.431  Sum_probs=81.1

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+||||||||++||||++.+|++|||||||++||+.+...+.+.                           
T Consensus       121 l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------  173 (220)
T cd03265         121 LLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY---------------------------  173 (220)
T ss_pred             CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH---------------------------
Confidence            33444566779999999999999999999999999999999999988877663                           


Q ss_pred             cchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535        117 RGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l  166 (209)
                            +.....+ ++|||++||+++.+.. +|+|++|++|++++.|+++++
T Consensus       174 ------l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         174 ------IEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             ------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence                  2222333 7899999999998865 899999999999999887764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.87  E-value=3.7e-23  Score=173.04  Aligned_cols=93  Identities=31%  Similarity=0.490  Sum_probs=77.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+++.                          
T Consensus       119 ~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~--------------------------  172 (213)
T cd03259         119 GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE--------------------------  172 (213)
T ss_pred             CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            444455666789999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG  161 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G  161 (209)
                             +..... .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus       173 -------l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         173 -------LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             -------HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence                   222222 37899999999998764 8999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.9e-23  Score=185.69  Aligned_cols=101  Identities=27%  Similarity=0.431  Sum_probs=86.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       129 gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~--------------------------  182 (343)
T PRK11153        129 GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL--------------------------  182 (343)
T ss_pred             CCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            444555667789999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             ++.... .++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       183 -------L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~  231 (343)
T PRK11153        183 -------LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH  231 (343)
T ss_pred             -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence                   233222 37899999999998765 899999999999999999998765

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.87  E-value=5.2e-23  Score=174.32  Aligned_cols=100  Identities=31%  Similarity=0.463  Sum_probs=84.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.........+||||||||++|||||+.+|++|||||||++||+.+...+++.                          
T Consensus       129 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~--------------------------  182 (233)
T cd03258         129 GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL--------------------------  182 (233)
T ss_pred             CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH--------------------------
Confidence            445555667789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                             ++....+ ++|||++||+++.+.. +|++++|++|++++.|+++++..
T Consensus       183 -------l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         183 -------LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             -------HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence                   2232333 7899999999998764 89999999999999999888754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.87  E-value=5.9e-23  Score=174.29  Aligned_cols=98  Identities=20%  Similarity=0.328  Sum_probs=83.9

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+                            
T Consensus       117 ~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l----------------------------  168 (230)
T TIGR02770       117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL----------------------------  168 (230)
T ss_pred             HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH----------------------------
Confidence            4456777899999999999999999999999999999999999887776632                            


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                           .+... .++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       169 -----~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  216 (230)
T TIGR02770       169 -----RELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN  216 (230)
T ss_pred             -----HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence                 22222 3789999999999986 5899999999999999999998754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.8e-23  Score=180.92  Aligned_cols=101  Identities=22%  Similarity=0.387  Sum_probs=86.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       133 gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~--------------------------  186 (280)
T PRK13633        133 GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT--------------------------  186 (280)
T ss_pred             CCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            444455666779999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             ++.... .+.|||++||+++.+..||++++|++|++++.|+++++..+
T Consensus       187 -------l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  234 (280)
T PRK13633        187 -------IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE  234 (280)
T ss_pred             -------HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence                   222222 37899999999999877999999999999999999998764

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=5.2e-23  Score=169.78  Aligned_cols=91  Identities=24%  Similarity=0.475  Sum_probs=79.4

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      .+-.|||||+|||+|||||+.+|++|++||||++|||+...++.+                                 ++
T Consensus       138 ~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~---------------------------------ii  184 (242)
T COG4161         138 YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS---------------------------------II  184 (242)
T ss_pred             CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH---------------------------------HH
Confidence            334999999999999999999999999999999999987666654                                 55


Q ss_pred             hhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535        124 RTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       124 ~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      +++...|.|-++|||..+..+. +.+|++|++|+|++.|+.+-.-
T Consensus       185 kel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft  229 (242)
T COG4161         185 KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             HHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence            5656678999999999999876 7999999999999999986543

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=6.3e-23  Score=179.15  Aligned_cols=101  Identities=24%  Similarity=0.417  Sum_probs=86.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++......+..|||||+||++|||||+.+|+||||||||++||+.++..+++.                          
T Consensus       125 gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~--------------------------  178 (274)
T PRK13644        125 GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER--------------------------  178 (274)
T ss_pred             CCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            444555667789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             ++....++.|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus       179 -------l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  225 (274)
T PRK13644        179 -------IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD  225 (274)
T ss_pred             -------HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence                   22223358899999999999877999999999999999999988654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.87  E-value=5.9e-23  Score=174.93  Aligned_cols=101  Identities=24%  Similarity=0.447  Sum_probs=85.9

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++......+.+||||||||++|||||+.+|+|+||||||++||+.+...+.+.                          
T Consensus       125 gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~--------------------------  178 (240)
T PRK09493        125 GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV--------------------------  178 (240)
T ss_pred             CChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            555566677789999999999999999999999999999999999988877662                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             +......++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus       179 -------l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (240)
T PRK09493        179 -------MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN  226 (240)
T ss_pred             -------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence                   22223347899999999999864 899999999999999999887653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=6.5e-23  Score=180.55  Aligned_cols=96  Identities=27%  Similarity=0.437  Sum_probs=82.6

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                               
T Consensus       139 ~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-------------------------------  187 (290)
T PRK13634        139 LARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-------------------------------  187 (290)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-------------------------------
Confidence            4566789999999999999999999999999999999999988877663                               


Q ss_pred             hhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        121 SLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                        ++.... .+.|||++||+++.+. .||||++|++|++++.|+++++...
T Consensus       188 --L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  236 (290)
T PRK13634        188 --FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD  236 (290)
T ss_pred             --HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence              223223 3789999999999875 5899999999999999999988654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=7.8e-23  Score=179.65  Aligned_cols=97  Identities=24%  Similarity=0.442  Sum_probs=83.4

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       138 ~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~------------------------------  187 (287)
T PRK13641        138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL------------------------------  187 (287)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH------------------------------
Confidence            44667789999999999999999999999999999999999888777653                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +......+.|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus       188 ---l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  235 (287)
T PRK13641        188 ---FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD  235 (287)
T ss_pred             ---HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence               2233335889999999999876 5899999999999999999988654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.87  E-value=5.1e-23  Score=173.76  Aligned_cols=88  Identities=34%  Similarity=0.515  Sum_probs=76.2

Q ss_pred             ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR  124 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (209)
                      +.+||||||||++|||||+.+|++|||||||++||+.+...+++.                                 ++
T Consensus       139 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------------l~  185 (227)
T cd03260         139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL---------------------------------IA  185 (227)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH---------------------------------HH
Confidence            479999999999999999999999999999999999988888663                                 33


Q ss_pred             hhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHH
Q psy12535        125 TSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       125 ~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l  166 (209)
                      +...+ +|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus       186 ~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         186 ELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             HHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            33334 89999999999876 5899999999999999887653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.87  E-value=6.6e-23  Score=184.98  Aligned_cols=97  Identities=29%  Similarity=0.502  Sum_probs=84.4

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      ....+..+||||||||++|||||+.+|++|||||||+|||+.+...+++.                              
T Consensus       165 ~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~------------------------------  214 (340)
T PRK13536        165 KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER------------------------------  214 (340)
T ss_pred             hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH------------------------------
Confidence            34556679999999999999999999999999999999999988888663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++.....|+|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       215 ---l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        215 ---LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             ---HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence               33333358999999999999864 899999999999999999998764

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.87  E-value=7.5e-23  Score=178.11  Aligned_cols=101  Identities=26%  Similarity=0.414  Sum_probs=84.7

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.+                         
T Consensus       149 ~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l-------------------------  203 (269)
T cd03294         149 GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL-------------------------  203 (269)
T ss_pred             CCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-------------------------
Confidence            3444456667799999999999999999999999999999999999888776632                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              ..... .++|||++||+++.+. .+|+|++|++|++++.|+++++.++
T Consensus       204 --------~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         204 --------LRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             --------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence                    22222 3789999999999875 5899999999999999999988754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=7.6e-23  Score=185.01  Aligned_cols=102  Identities=27%  Similarity=0.500  Sum_probs=86.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.+                         
T Consensus       117 gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L-------------------------  171 (352)
T PRK11144        117 GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL-------------------------  171 (352)
T ss_pred             CCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-------------------------
Confidence            4455566777899999999999999999999999999999999999888776632                         


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              +....+ ++|+|+|||+++.+. .+|+|++|++|++++.|+++++..+.
T Consensus       172 --------~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p  220 (352)
T PRK11144        172 --------ERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS  220 (352)
T ss_pred             --------HHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence                    222223 789999999999875 48999999999999999999997654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=8.2e-23  Score=179.44  Aligned_cols=101  Identities=20%  Similarity=0.446  Sum_probs=85.7

Q ss_pred             CCc-eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         36 GDR-TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        36 g~~-t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      |++ ......+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                         
T Consensus       133 gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~-------------------------  187 (286)
T PRK13646        133 GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL-------------------------  187 (286)
T ss_pred             CCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-------------------------
Confidence            554 345667889999999999999999999999999999999999988887663                         


Q ss_pred             cccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        115 GVRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       115 ~~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              ++.... .++|||+|||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       188 --------l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  236 (286)
T PRK13646        188 --------LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD  236 (286)
T ss_pred             --------HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence                    333332 4789999999999875 5899999999999999999988764

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=9.1e-23  Score=174.94  Aligned_cols=97  Identities=26%  Similarity=0.432  Sum_probs=83.8

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                             
T Consensus       138 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-----------------------------  188 (250)
T PRK14245        138 DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL-----------------------------  188 (250)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-----------------------------
Confidence            345667789999999999999999999999999999999999988887663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          +++. .+++|||++||+++.+. .+|+|++|++|++++.|+++++.++
T Consensus       189 ----l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~  235 (250)
T PRK14245        189 ----IHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN  235 (250)
T ss_pred             ----HHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence                3333 24689999999999875 5899999999999999999998754

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=8.8e-23  Score=177.51  Aligned_cols=97  Identities=24%  Similarity=0.388  Sum_probs=82.9

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       129 ~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  178 (271)
T PRK13638        129 FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI------------------------------  178 (271)
T ss_pred             HhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            34556779999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +.+...+++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       179 ---l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (271)
T PRK13638        179 ---IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC  226 (271)
T ss_pred             ---HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence               2232334789999999999985 5899999999999999999888654

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=7.9e-23  Score=175.37  Aligned_cols=100  Identities=23%  Similarity=0.359  Sum_probs=85.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+                         
T Consensus       142 gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L-------------------------  196 (255)
T PRK11300        142 GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI-------------------------  196 (255)
T ss_pred             ChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH-------------------------
Confidence            5556677888899999999999999999999999999999999999888776632                         


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                              .....+ ++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       197 --------~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  243 (255)
T PRK11300        197 --------AELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN  243 (255)
T ss_pred             --------HHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence                    222233 7899999999999864 89999999999999999988754

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.87  E-value=5.4e-23  Score=171.21  Aligned_cols=107  Identities=59%  Similarity=1.030  Sum_probs=90.8

Q ss_pred             cceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccC
Q psy12535         18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTG   97 (209)
Q Consensus        18 ~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~   97 (209)
                      .++++.+++.+++..+|.|+++.++..+.+||+|||||++||||++.+|+++||||||++||+.+...+++.++.     
T Consensus        98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~-----  172 (204)
T cd03250          98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL-----  172 (204)
T ss_pred             HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH-----
Confidence            344555677778888999999999999999999999999999999999999999999999999887777664322     


Q ss_pred             CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535         98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS  156 (209)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~  156 (209)
                                                 .....++|||++||+++.+..+|+|++|++|+
T Consensus       173 ---------------------------~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         173 ---------------------------GLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             ---------------------------HhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence                                       11234789999999999887799999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.87  E-value=7.6e-23  Score=177.38  Aligned_cols=97  Identities=26%  Similarity=0.364  Sum_probs=83.8

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+..||||||||++|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       143 ~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~------------------------------  192 (265)
T TIGR02769       143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL------------------------------  192 (265)
T ss_pred             hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            45667789999999999999999999999999999999999888777663                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++.... .++|||++||+++.+. .+|++++|++|++++.|+++++...
T Consensus       193 ---l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  241 (265)
T TIGR02769       193 ---LRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF  241 (265)
T ss_pred             ---HHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCC
Confidence               222222 3789999999999987 4899999999999999999998764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.8e-23  Score=188.98  Aligned_cols=102  Identities=24%  Similarity=0.409  Sum_probs=84.9

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+|||||||||+|||||+.+|+||||||||++||...+..+.+.+...                       
T Consensus       139 L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l-----------------------  195 (377)
T PRK11607        139 MQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI-----------------------  195 (377)
T ss_pred             CchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----------------------
Confidence            334455667799999999999999999999999999999999999888776543211                       


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                            .   ...+.|+|+|||+++.+. .+|+|++|++|++++.|+++++..+.
T Consensus       196 ------~---~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p  241 (377)
T PRK11607        196 ------L---ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP  241 (377)
T ss_pred             ------H---HhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence                  1   123789999999999864 68999999999999999999997653

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.87  E-value=1e-22  Score=180.31  Aligned_cols=95  Identities=31%  Similarity=0.503  Sum_probs=83.7

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ..+..+||+|||||++||+||+.+|++|||||||+|||+.....+++                                 
T Consensus       131 ~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~---------------------------------  177 (293)
T COG1131         131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWE---------------------------------  177 (293)
T ss_pred             CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHH---------------------------------
Confidence            45578999999999999999999999999999999999998887766                                 


Q ss_pred             hhhhhcccc-ceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        122 LVRTSFLKE-KTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       122 ~~~~~~~~~-~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                      +++....++ +||+++||.++.+.. ||+|++|++|++++.|+++++...
T Consensus       178 ~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~  227 (293)
T COG1131         178 LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK  227 (293)
T ss_pred             HHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence            344445555 799999999999876 899999999999999999998765

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.86  E-value=1.1e-22  Score=175.47  Aligned_cols=98  Identities=22%  Similarity=0.412  Sum_probs=84.5

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.++..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+                            
T Consensus       143 ~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l----------------------------  194 (258)
T PRK11701        143 ARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL----------------------------  194 (258)
T ss_pred             hHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH----------------------------
Confidence            4567788999999999999999999999999999999999999888776632                            


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                           +.... .+.|||++||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus       195 -----~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~  242 (258)
T PRK11701        195 -----RGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD  242 (258)
T ss_pred             -----HHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence                 22222 3789999999999987 5899999999999999999988654

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1e-22  Score=178.63  Aligned_cols=101  Identities=23%  Similarity=0.340  Sum_probs=85.7

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|+||||||||++||+.+...+++.+                         
T Consensus       130 gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l-------------------------  184 (283)
T PRK13636        130 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL-------------------------  184 (283)
T ss_pred             CChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-------------------------
Confidence            3344456677899999999999999999999999999999999999888776632                         


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              +....+ ++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus       185 --------~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  232 (283)
T PRK13636        185 --------VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  232 (283)
T ss_pred             --------HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence                    222323 789999999999986 5899999999999999999998764

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=7.1e-23  Score=178.91  Aligned_cols=100  Identities=25%  Similarity=0.407  Sum_probs=84.5

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+++.                           
T Consensus       127 l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~---------------------------  179 (277)
T PRK13652        127 LEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF---------------------------  179 (277)
T ss_pred             ChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence            33345566779999999999999999999999999999999999988877663                           


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                            ++.... .+.|||++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus       180 ------l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  228 (277)
T PRK13652        180 ------LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ  228 (277)
T ss_pred             ------HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence                  222233 3789999999999985 5899999999999999999998754

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.86  E-value=1e-22  Score=184.16  Aligned_cols=101  Identities=28%  Similarity=0.463  Sum_probs=86.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++...+..+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+                         
T Consensus       120 gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L-------------------------  174 (354)
T TIGR02142       120 GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL-------------------------  174 (354)
T ss_pred             CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH-------------------------
Confidence            4555667778899999999999999999999999999999999999888876633                         


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              +....+ ++|+|++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       175 --------~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (354)
T TIGR02142       175 --------ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS  222 (354)
T ss_pred             --------HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence                    222333 789999999999876 4899999999999999999998754

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.2e-22  Score=173.92  Aligned_cols=97  Identities=30%  Similarity=0.486  Sum_probs=82.6

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+++.                             
T Consensus       136 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-----------------------------  186 (247)
T TIGR00972       136 DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL-----------------------------  186 (247)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence            345667789999999999999999999999999999999999988877663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          ++... +++|||++||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus       187 ----l~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  233 (247)
T TIGR00972       187 ----IQELK-KKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN  233 (247)
T ss_pred             ----HHHHH-hcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence                22222 2479999999999876 5899999999999999999988654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.7e-23  Score=180.54  Aligned_cols=100  Identities=27%  Similarity=0.441  Sum_probs=84.8

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +...+...+..|||||||||+|||||+.+|+||||||||++||+.+...+++.                           
T Consensus       130 L~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~---------------------------  182 (279)
T PRK13635        130 MEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLET---------------------------  182 (279)
T ss_pred             ChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence            33444556679999999999999999999999999999999999988888763                           


Q ss_pred             cchhhhhhhhccc-cceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        117 RGALSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                            ++....+ +.|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus       183 ------l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13635        183 ------VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS  230 (279)
T ss_pred             ------HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence                  2232333 7899999999998878999999999999999999888654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.86  E-value=2.5e-23  Score=174.43  Aligned_cols=103  Identities=27%  Similarity=0.463  Sum_probs=88.2

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      ++..++++.++|.+....+|.           +||||||||++||||++++|++||.||||.+|||.....++.      
T Consensus       116 ~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~------  178 (223)
T COG2884         116 RRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR------  178 (223)
T ss_pred             HHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH------
Confidence            344556677777777777776           999999999999999999999999999999999998887766      


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheeccc-ceEEEeeccceeecc
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG  161 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~~~G  161 (209)
                                                 ++.+..+.|.|||++|||.+.+... .|++.|++|+++...
T Consensus       179 ---------------------------lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         179 ---------------------------LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE  219 (223)
T ss_pred             ---------------------------HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence                                       4445566799999999999999875 899999999998654

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.86  E-value=1.1e-22  Score=176.96  Aligned_cols=100  Identities=23%  Similarity=0.299  Sum_probs=84.3

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                           
T Consensus       133 l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~---------------------------  185 (269)
T PRK11831        133 LRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL---------------------------  185 (269)
T ss_pred             ChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH---------------------------
Confidence            33445566789999999999999999999999999999999999988877663                           


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                            ++.... .++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       186 ------l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  234 (269)
T PRK11831        186 ------ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN  234 (269)
T ss_pred             ------HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence                  222222 37899999999998765 899999999999999999998754

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.86  E-value=1.3e-22  Score=174.79  Aligned_cols=101  Identities=33%  Similarity=0.545  Sum_probs=85.0

Q ss_pred             CCceee-cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         36 GDRTLV-GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        36 g~~t~v-g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      |+.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                         
T Consensus       140 gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------  194 (257)
T PRK10619        140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI-------------------------  194 (257)
T ss_pred             CCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-------------------------
Confidence            344333 566789999999999999999999999999999999999988887663                         


Q ss_pred             cccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              +++....++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       195 --------l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  242 (257)
T PRK10619        195 --------MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN  242 (257)
T ss_pred             --------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhC
Confidence                    22333358999999999999875 899999999999999999988643

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.86  E-value=6.2e-23  Score=170.97  Aligned_cols=88  Identities=32%  Similarity=0.509  Sum_probs=73.8

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      ...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                            
T Consensus       117 ~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~----------------------------  168 (205)
T cd03226         117 YALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL----------------------------  168 (205)
T ss_pred             chhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHH----------------------------
Confidence            3344556679999999999999999999999999999999999988877663                            


Q ss_pred             chhhhhhhhccccceeeeeeeehheec-ccceEEEeecccee
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVE  158 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~  158 (209)
                           ++....+++|||++||+++.+. .+|+|++|++|+++
T Consensus       169 -----l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         169 -----IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             -----HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence                 2232335789999999999886 48999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.2e-22  Score=172.64  Aligned_cols=94  Identities=22%  Similarity=0.358  Sum_probs=81.1

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                                
T Consensus       132 ~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~--------------------------------  179 (237)
T PRK11614        132 IQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDT--------------------------------  179 (237)
T ss_pred             hCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHH--------------------------------
Confidence            456678999999999999999999999999999999999988877663                                


Q ss_pred             hhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                       ++....+++|||++||+++.+. .+|++++|++|++++.|+++++..
T Consensus       180 -l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        180 -IEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             -HHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence             2222335889999999999765 589999999999999999998864

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.86  E-value=1.4e-22  Score=172.60  Aligned_cols=99  Identities=22%  Similarity=0.358  Sum_probs=84.8

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++......+..|||||+||++||||++.+|++|||||||++||+.+...+.+.                          
T Consensus       132 ~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~--------------------------  185 (242)
T TIGR03411       132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL--------------------------  185 (242)
T ss_pred             CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHH--------------------------
Confidence            455556777889999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                             ++... +++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       186 -------l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  231 (242)
T TIGR03411       186 -------LKSLA-GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA  231 (242)
T ss_pred             -------HHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence                   22222 36899999999999864 89999999999999999988754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.86  E-value=1.2e-22  Score=187.26  Aligned_cols=98  Identities=33%  Similarity=0.481  Sum_probs=83.8

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ........+||||||||++|||||+++|+||||||||++||+.++..+++                              
T Consensus       131 ~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~------------------------------  180 (402)
T PRK09536        131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE------------------------------  180 (402)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH------------------------------
Confidence            33455667999999999999999999999999999999999988877765                              


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +++++...++|||++||+++.+. .||++++|++|++++.|++++++..
T Consensus       181 ---lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~  229 (402)
T PRK09536        181 ---LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA  229 (402)
T ss_pred             ---HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence               33333335789999999999985 5899999999999999999997653

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=5.7e-23  Score=180.08  Aligned_cols=101  Identities=25%  Similarity=0.408  Sum_probs=85.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.+                         
T Consensus       132 ~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l-------------------------  186 (282)
T PRK13640        132 GMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLI-------------------------  186 (282)
T ss_pred             CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-------------------------
Confidence            3344456667799999999999999999999999999999999999888876632                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              ..... .++|||++||+++.+..||++++|++|++++.|+++++...
T Consensus       187 --------~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  233 (282)
T PRK13640        187 --------RKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK  233 (282)
T ss_pred             --------HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence                    22222 37899999999998877999999999999999999988653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.86  E-value=1.1e-22  Score=171.29  Aligned_cols=96  Identities=36%  Similarity=0.478  Sum_probs=79.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+.....+||||||||++|||||+.+|++|||||||++||+.+...+++.                          
T Consensus       120 ~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~--------------------------  173 (220)
T cd03293         120 GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE--------------------------  173 (220)
T ss_pred             CChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHH--------------------------
Confidence            344455666789999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEee--ccceeecchhh
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLE--KGSVEAFGTTT  164 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~--~G~i~~~G~~~  164 (209)
                             +++... .++|||++||+++.+. .||++++|+  +|++++.++.+
T Consensus       174 -------l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         174 -------LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             -------HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence                   222222 3789999999999875 589999999  79999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=5.5e-23  Score=189.35  Aligned_cols=101  Identities=26%  Similarity=0.444  Sum_probs=85.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+                         
T Consensus       153 gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L-------------------------  207 (400)
T PRK10070        153 GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDEL-------------------------  207 (400)
T ss_pred             CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH-------------------------
Confidence            3444556667799999999999999999999999999999999999888886643                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              ..... .++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       208 --------~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~  255 (400)
T PRK10070        208 --------VKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN  255 (400)
T ss_pred             --------HHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence                    22222 4789999999999875 5899999999999999999998764

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.86  E-value=1e-22  Score=170.68  Aligned_cols=88  Identities=22%  Similarity=0.399  Sum_probs=73.7

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.                           
T Consensus       128 l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------  180 (216)
T TIGR00960       128 LEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL---------------------------  180 (216)
T ss_pred             ChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH---------------------------
Confidence            33445556679999999999999999999999999999999999988887663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV  157 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i  157 (209)
                            +.....+++|||+|||+++.+.. ||+|++|++|+|
T Consensus       181 ------l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       181 ------FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             ------HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence                  22223347899999999998874 899999999975

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.9e-22  Score=173.32  Aligned_cols=96  Identities=27%  Similarity=0.415  Sum_probs=82.6

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.                               
T Consensus       144 ~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------------  192 (254)
T PRK14273        144 LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL-------------------------------  192 (254)
T ss_pred             HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-------------------------------
Confidence            3556789999999999999999999999999999999999988887663                               


Q ss_pred             hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                        ++... +++|||++||+++.+. .+|+|++|++|++++.|+++++..+.
T Consensus       193 --l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  240 (254)
T PRK14273        193 --IINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNP  240 (254)
T ss_pred             --HHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence              22322 3689999999999875 48999999999999999999987543

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.86  E-value=8.7e-23  Score=173.65  Aligned_cols=98  Identities=30%  Similarity=0.474  Sum_probs=81.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+                         
T Consensus       103 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l-------------------------  157 (230)
T TIGR01184       103 GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL-------------------------  157 (230)
T ss_pred             CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH-------------------------
Confidence            3344455667899999999999999999999999999999999999888876632                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHH
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l  166 (209)
                              .+... .++|||+|||+++.+. .+|+|++|++|++++.|+..++
T Consensus       158 --------~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       158 --------MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             --------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence                    22223 3789999999999876 4899999999999998876655

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.3e-22  Score=185.86  Aligned_cols=101  Identities=27%  Similarity=0.463  Sum_probs=85.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.+.                        
T Consensus       153 gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~------------------------  208 (382)
T TIGR03415       153 GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELL------------------------  208 (382)
T ss_pred             CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH------------------------
Confidence            34444556677999999999999999999999999999999999998888876432                        


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                               .... .++|||+|||+++.+ +.+|+|++|++|++++.|+++++..+
T Consensus       209 ---------~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~  255 (382)
T TIGR03415       209 ---------ELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN  255 (382)
T ss_pred             ---------HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence                     2222 378999999999986 45899999999999999999999754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.86  E-value=1.2e-22  Score=170.34  Aligned_cols=93  Identities=28%  Similarity=0.529  Sum_probs=78.7

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       120 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  173 (214)
T cd03297         120 GLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE--------------------------  173 (214)
T ss_pred             CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            455556777889999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G  161 (209)
                             +++...+ ++|||++||+++.+. .+|++++|++|++++.|
T Consensus       174 -------l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         174 -------LKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             -------HHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence                   2232233 789999999999886 58999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=1e-22  Score=177.98  Aligned_cols=95  Identities=26%  Similarity=0.428  Sum_probs=82.9

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      .+.+|||||+||++|||||+.+|+++++|||+|+||...+.++...                                 +
T Consensus       106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnL---------------------------------L  152 (268)
T COG4608         106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNL---------------------------------L  152 (268)
T ss_pred             CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHH---------------------------------H
Confidence            3349999999999999999999999999999999999888777652                                 2


Q ss_pred             hhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        124 RTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       124 ~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                      .... ..+.|.++||||++.+++ +|||++|..|+|++.|+.++++.+..
T Consensus       153 ~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~  202 (268)
T COG4608         153 KDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL  202 (268)
T ss_pred             HHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence            2322 348899999999999987 79999999999999999999998654

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.5e-22  Score=172.54  Aligned_cols=100  Identities=26%  Similarity=0.372  Sum_probs=84.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+..........|||||+||++||||++.+|++|||||||++||+.+...+.+.                          
T Consensus       126 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  179 (241)
T PRK10895        126 HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI--------------------------  179 (241)
T ss_pred             CCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            445556677889999999999999999999999999999999999888777552                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                             +......++|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus       180 -------l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        180 -------IEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             -------HHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence                   2222335789999999998775 589999999999999999988764

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.3e-22  Score=172.98  Aligned_cols=99  Identities=23%  Similarity=0.407  Sum_probs=84.7

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       130 gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~--------------------------  183 (242)
T PRK11124        130 RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI--------------------------  183 (242)
T ss_pred             CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHH--------------------------
Confidence            555666777889999999999999999999999999999999999888777662                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                             ++.....++|+|++||+++.+. .+|++++|++|++++.|+++++.
T Consensus       184 -------l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  229 (242)
T PRK11124        184 -------IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             -------HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence                   2232334789999999999986 48999999999999999988764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.86  E-value=1.5e-22  Score=172.90  Aligned_cols=96  Identities=27%  Similarity=0.466  Sum_probs=82.0

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+                             
T Consensus       128 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L-----------------------------  178 (242)
T cd03295         128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF-----------------------------  178 (242)
T ss_pred             HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH-----------------------------
Confidence            456677899999999999999999999999999999999998887776632                             


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                          ..... .++|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus       179 ----~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  225 (242)
T cd03295         179 ----KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR  225 (242)
T ss_pred             ----HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence                22222 3789999999999865 589999999999999999888754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.7e-22  Score=173.38  Aligned_cols=96  Identities=27%  Similarity=0.440  Sum_probs=82.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .++..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       142 ~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------  191 (253)
T PRK14242        142 RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL------------------------------  191 (253)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            44667789999999999999999999999999999999999988777663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++.. .+++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       192 ---l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  238 (253)
T PRK14242        192 ---IHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR  238 (253)
T ss_pred             ---HHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence               2232 23689999999999885 5899999999999999999988653

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.6e-22  Score=171.59  Aligned_cols=101  Identities=27%  Similarity=0.485  Sum_probs=85.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+......||||||||++||||++.+|++|||||||++||+.++..+.+.                          
T Consensus       118 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~--------------------------  171 (232)
T PRK10771        118 GIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTL--------------------------  171 (232)
T ss_pred             CcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            344455666679999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             +..... .++|+|++||+++.+.. +|+|++|++|++++.|+++++..+
T Consensus       172 -------l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~  220 (232)
T PRK10771        172 -------VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG  220 (232)
T ss_pred             -------HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence                   222222 37899999999998765 799999999999999999988754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2e-22  Score=175.79  Aligned_cols=97  Identities=26%  Similarity=0.421  Sum_probs=83.2

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       138 ~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  187 (280)
T PRK13649        138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL------------------------------  187 (280)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            44667789999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +......++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       188 ---l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  235 (280)
T PRK13649        188 ---FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD  235 (280)
T ss_pred             ---HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence               2222234789999999999886 4899999999999999999988654

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.8e-22  Score=176.40  Aligned_cols=97  Identities=23%  Similarity=0.384  Sum_probs=83.7

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+..|||||+||++|||||+.+|++|||||||++||+.+...+.+.+                             
T Consensus       133 ~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l-----------------------------  183 (277)
T PRK13642        133 FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI-----------------------------  183 (277)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH-----------------------------
Confidence            344566799999999999999999999999999999999999888886632                             


Q ss_pred             hhhhhhhccc-cceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          .....+ ++|||++||+++.+..+|+|++|++|++++.|+++++...
T Consensus       184 ----~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (277)
T PRK13642        184 ----HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT  230 (277)
T ss_pred             ----HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence                222333 7899999999999877999999999999999999998754

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.8e-22  Score=177.14  Aligned_cols=97  Identities=22%  Similarity=0.423  Sum_probs=82.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++|||||+.+|+||||||||++||+.+...+++.                              
T Consensus       143 ~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~------------------------------  192 (289)
T PRK13645        143 YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL------------------------------  192 (289)
T ss_pred             HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            34567789999999999999999999999999999999999988777663                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++.... .++|||+|||+++.+. .||+|++|++|++++.|+++++.++
T Consensus       193 ---l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  241 (289)
T PRK13645        193 ---FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN  241 (289)
T ss_pred             ---HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence               222222 3789999999999875 5899999999999999999887653

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.7e-22  Score=173.49  Aligned_cols=101  Identities=27%  Similarity=0.457  Sum_probs=85.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+...+.+|||||+||++|||||+.+|++|||||||++||+.+...+++.                          
T Consensus       135 gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~--------------------------  188 (252)
T TIGR03005       135 GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV--------------------------  188 (252)
T ss_pred             CChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            445556677789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             ++.... .++|+|++||+++.+. .+|++++|++|++++.|+++++...
T Consensus       189 -------l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  237 (252)
T TIGR03005       189 -------IRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ  237 (252)
T ss_pred             -------HHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence                   222222 3789999999999885 5899999999999999999988654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.86  E-value=1.4e-22  Score=169.27  Aligned_cols=93  Identities=28%  Similarity=0.501  Sum_probs=78.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+...+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.                          
T Consensus       119 ~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  172 (213)
T cd03301         119 QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE--------------------------  172 (213)
T ss_pred             CCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            444455667789999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG  161 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G  161 (209)
                             +++... .++|||++||+++.+.. +|+|++|++|++++.|
T Consensus       173 -------l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         173 -------LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             -------HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence                   222222 37899999999998765 8999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.86  E-value=1.4e-22  Score=170.26  Aligned_cols=90  Identities=23%  Similarity=0.440  Sum_probs=76.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+...+..|||||||||+|||||+.+|+||||||||++||+.+...+.+.+                         
T Consensus       130 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-------------------------  184 (221)
T TIGR02211       130 GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM-------------------------  184 (221)
T ss_pred             CChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHH-------------------------
Confidence            4455566777899999999999999999999999999999999999888876632                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeecccee
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVE  158 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~  158 (209)
                              ..... .++|||++||+++.+..+|+|++|++|+++
T Consensus       185 --------~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       185 --------LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             --------HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence                    22222 378999999999988778999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.2e-22  Score=176.23  Aligned_cols=98  Identities=30%  Similarity=0.353  Sum_probs=82.5

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      ...+.....+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                            
T Consensus       138 ~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~----------------------------  189 (265)
T PRK10575        138 KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL----------------------------  189 (265)
T ss_pred             HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH----------------------------
Confidence            3344556679999999999999999999999999999999999988877663                            


Q ss_pred             chhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        118 GALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       118 ~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                           +..... .+.|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus       190 -----l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (265)
T PRK10575        190 -----VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR  237 (265)
T ss_pred             -----HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence                 222222 3789999999999886 589999999999999999988764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.86  E-value=1.5e-22  Score=170.28  Aligned_cols=90  Identities=27%  Similarity=0.439  Sum_probs=76.6

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ..+...+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                             
T Consensus       137 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-----------------------------  187 (228)
T cd03257         137 EVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDL-----------------------------  187 (228)
T ss_pred             hHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH-----------------------------
Confidence            345677789999999999999999999999999999999999988877663                             


Q ss_pred             hhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535        119 ALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       119 ~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G  161 (209)
                          +.....+ ++|||++||+++.+. .+|+|++|++|++++.|
T Consensus       188 ----l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         188 ----LKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             ----HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence                2222333 789999999999887 58999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.86  E-value=1.4e-22  Score=169.98  Aligned_cols=89  Identities=27%  Similarity=0.455  Sum_probs=75.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       129 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~--------------------------  182 (218)
T cd03255         129 GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL--------------------------  182 (218)
T ss_pred             CCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            445555677789999999999999999999999999999999999988777663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccce
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSV  157 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i  157 (209)
                             +..... .++|||++||+++.+..||+|++|++|++
T Consensus       183 -------l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         183 -------LRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             -------HHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence                   233233 37899999999998877899999999975

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.86  E-value=1.5e-22  Score=174.88  Aligned_cols=97  Identities=27%  Similarity=0.462  Sum_probs=82.2

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +...+...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                           
T Consensus       142 l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------  194 (262)
T PRK09984        142 MVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT---------------------------  194 (262)
T ss_pred             CHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHH---------------------------
Confidence            33345667789999999999999999999999999999999999988887663                           


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHH
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l  166 (209)
                            ++.... .++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus       195 ------l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        195 ------LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             ------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence                  222222 3789999999999865 5899999999999999999886

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.2e-22  Score=173.20  Aligned_cols=99  Identities=30%  Similarity=0.414  Sum_probs=83.6

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+|||||+||++||||++.+|++|||||||++||+.+...+.+.                           
T Consensus       128 l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~---------------------------  180 (255)
T PRK11231        128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL---------------------------  180 (255)
T ss_pred             CHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH---------------------------
Confidence            33444566779999999999999999999999999999999999988877663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                            ++....+++|||++||+++.+. .+|+|++|++|+++..|+++++..
T Consensus       181 ------l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  227 (255)
T PRK11231        181 ------MRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT  227 (255)
T ss_pred             ------HHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence                  2222334789999999999876 589999999999999999988764

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.86  E-value=1.4e-22  Score=169.99  Aligned_cols=93  Identities=29%  Similarity=0.425  Sum_probs=78.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+||||||||++||||++.+|++|||||||++||+.+...+.+.                          
T Consensus       125 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~--------------------------  178 (218)
T cd03266         125 GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF--------------------------  178 (218)
T ss_pred             CCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHH--------------------------
Confidence            455556677889999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG  161 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G  161 (209)
                             +.....+++|||+|||+++.+.. +|+|++|++|++++.|
T Consensus       179 -------l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         179 -------IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             -------HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence                   22323357899999999998764 8999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.86  E-value=1.3e-22  Score=169.14  Aligned_cols=93  Identities=24%  Similarity=0.314  Sum_probs=77.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+|||||||||+||||++.+|++|||||||++||+.+...+.+.                          
T Consensus       115 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  168 (208)
T cd03268         115 GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELREL--------------------------  168 (208)
T ss_pred             CCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHH--------------------------
Confidence            334445666789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G  161 (209)
                             +......++|+|++||+++.+. .+|+|++|++|++++.|
T Consensus       169 -------l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         169 -------ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             -------HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence                   2222235789999999999886 48999999999998764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.2e-22  Score=173.69  Aligned_cols=96  Identities=27%  Similarity=0.429  Sum_probs=82.6

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       147 ~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------  196 (258)
T PRK14268        147 RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL------------------------------  196 (258)
T ss_pred             hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH------------------------------
Confidence            34567789999999999999999999999999999999999988877653                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++... +++|||++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus       197 ---l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  243 (258)
T PRK14268        197 ---IMNLK-KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN  243 (258)
T ss_pred             ---HHHHh-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence               33322 3689999999999875 5899999999999999999988654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.7e-22  Score=173.83  Aligned_cols=94  Identities=24%  Similarity=0.414  Sum_probs=82.4

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      .+..+|||||+|||+|||||+.+|+|+|.|||+++|||.+.+.+++.+...                             
T Consensus       143 qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i-----------------------------  193 (258)
T COG3638         143 QRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI-----------------------------  193 (258)
T ss_pred             HHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH-----------------------------
Confidence            456799999999999999999999999999999999999999998853221                             


Q ss_pred             hhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                         ....|.|+|+..|+++.+. +||||+-|++|+|++.|++.++-.
T Consensus       194 ---n~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~  237 (258)
T COG3638         194 ---NQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD  237 (258)
T ss_pred             ---HHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence               1346899999999999976 589999999999999999988644

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.6e-22  Score=174.33  Aligned_cols=98  Identities=29%  Similarity=0.439  Sum_probs=83.9

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++||||++.+|++|||||||++||+.+...+++.                              
T Consensus       135 ~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  184 (269)
T PRK13648        135 RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL------------------------------  184 (269)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            44556779999999999999999999999999999999999988887663                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                         ++.... .++|||++||+++.+..+|+|++|++|++++.|+++++..+.
T Consensus       185 ---L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  233 (269)
T PRK13648        185 ---VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA  233 (269)
T ss_pred             ---HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence               222222 378999999999988779999999999999999999987653

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.86  E-value=2.8e-22  Score=170.43  Aligned_cols=93  Identities=20%  Similarity=0.246  Sum_probs=78.7

Q ss_pred             cccce-ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         42 GDKGV-SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        42 g~~g~-~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ..... +|||||||||+|||||+.+|++|||||||++||+.+...+.+.                               
T Consensus       138 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------------  186 (243)
T TIGR01978       138 NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG-------------------------------  186 (243)
T ss_pred             ccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-------------------------------
Confidence            34444 5999999999999999999999999999999999988877663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc--cceEEEeeccceeecchhhHHh
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                        ++....+++|||++||+++.+..  +|+|++|++|++++.|+++++.
T Consensus       187 --l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       187 --INRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             --HHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence              22323357899999999999864  6999999999999999987654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.86  E-value=2.3e-22  Score=172.55  Aligned_cols=98  Identities=24%  Similarity=0.428  Sum_probs=84.5

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +..+..+..|||||||||+|||||+.+|++|||||||++||+.+...+.+.+                            
T Consensus       140 ~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l----------------------------  191 (253)
T TIGR02323       140 TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL----------------------------  191 (253)
T ss_pred             hhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH----------------------------
Confidence            4567788899999999999999999999999999999999999888876632                            


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                           ..... .+.|+|+|||+++.+. .+|++++|++|++++.|+++++...
T Consensus       192 -----~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~  239 (253)
T TIGR02323       192 -----RGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD  239 (253)
T ss_pred             -----HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcC
Confidence                 22222 3789999999999987 4899999999999999999888654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.86  E-value=3e-22  Score=172.46  Aligned_cols=99  Identities=29%  Similarity=0.426  Sum_probs=84.2

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+|||||+||++|||||+.+|+++||||||++||+.+...+.+.                           
T Consensus       127 l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------  179 (256)
T TIGR03873       127 LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL---------------------------  179 (256)
T ss_pred             cHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH---------------------------
Confidence            34445667789999999999999999999999999999999999988877663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                            ++....+++|||++||+++.+. .+|+|++|++|++++.|+.+++..
T Consensus       180 ------l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (256)
T TIGR03873       180 ------VRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT  226 (256)
T ss_pred             ------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence                  2232334789999999999985 589999999999999999988764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2e-22  Score=171.13  Aligned_cols=94  Identities=22%  Similarity=0.387  Sum_probs=79.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++||||++.+|+||||||||++||+.+...+.+.                          
T Consensus       134 gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------  187 (233)
T PRK11629        134 GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL--------------------------  187 (233)
T ss_pred             CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH--------------------------
Confidence            445556677789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~  162 (209)
                             ++.... +++|||++||+++.+..+|++++|++|++++.++
T Consensus       188 -------l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        188 -------LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             -------HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence                   223222 4789999999999988888999999999987765

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.86  E-value=3e-22  Score=177.19  Aligned_cols=100  Identities=30%  Similarity=0.393  Sum_probs=86.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+..||||||||++|||||+.+|++|||||||+|||+.+.+.+++.                          
T Consensus       122 gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~--------------------------  175 (301)
T TIGR03522       122 GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNV--------------------------  175 (301)
T ss_pred             CCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            455556777889999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             ++... +++|||++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus       176 -------l~~~~-~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (301)
T TIGR03522       176 -------IKNIG-KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA  222 (301)
T ss_pred             -------HHHhc-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence                   22222 36899999999998765 899999999999999999998764

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.86  E-value=2.2e-22  Score=168.99  Aligned_cols=96  Identities=24%  Similarity=0.432  Sum_probs=80.8

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.........+||+||+||++|||||+.+|++|||||||++||+.+...+.+.+                          
T Consensus       123 l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l--------------------------  176 (220)
T cd03263         123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI--------------------------  176 (220)
T ss_pred             CHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHH--------------------------
Confidence            333445566799999999999999999999999999999999999888876632                          


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l  166 (209)
                             +... +++|||++||+++.+.. +|+|++|++|++++.|+++++
T Consensus       177 -------~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         177 -------LEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             -------HHHh-cCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence                   2222 35899999999998864 899999999999999988765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.2e-22  Score=171.06  Aligned_cols=97  Identities=28%  Similarity=0.371  Sum_probs=82.6

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++||||++.+|++|||||||++||+.+...+.+.                              
T Consensus       124 ~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------  173 (241)
T PRK14250        124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL------------------------------  173 (241)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            34566779999999999999999999999999999999999888777653                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++.... .++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus       174 ---l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (241)
T PRK14250        174 ---IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN  222 (241)
T ss_pred             ---HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence               222222 3789999999999876 4899999999999999999988754

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.85  E-value=2.9e-22  Score=172.61  Aligned_cols=97  Identities=19%  Similarity=0.341  Sum_probs=83.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .++..+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       133 ~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~------------------------------  182 (254)
T PRK10418        133 VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL------------------------------  182 (254)
T ss_pred             hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH------------------------------
Confidence            45677889999999999999999999999999999999999888777663                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++.... .+.|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       183 ---L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  231 (254)
T PRK10418        183 ---LESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA  231 (254)
T ss_pred             ---HHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence               222222 3789999999999986 5899999999999999999998754

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.1e-22  Score=174.70  Aligned_cols=98  Identities=20%  Similarity=0.384  Sum_probs=83.9

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ......+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.                             
T Consensus       129 ~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~-----------------------------  179 (275)
T PRK13639        129 GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKL-----------------------------  179 (275)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-----------------------------
Confidence            344556779999999999999999999999999999999999988887663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          +......++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus       180 ----l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  227 (275)
T PRK13639        180 ----LYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD  227 (275)
T ss_pred             ----HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence                2232334789999999999876 5899999999999999999998754

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.85  E-value=2.7e-22  Score=169.29  Aligned_cols=99  Identities=31%  Similarity=0.555  Sum_probs=84.8

Q ss_pred             echhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCcccc
Q psy12535         25 ALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR  104 (209)
Q Consensus        25 ~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~  104 (209)
                      .+.+++..++.|+++.+...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.               
T Consensus       128 ~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~---------------  192 (226)
T cd03248         128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQA---------------  192 (226)
T ss_pred             CcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH---------------
Confidence            34556777777888889999999999999999999999999999999999999999988877663               


Q ss_pred             chhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccce
Q psy12535        105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV  157 (209)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i  157 (209)
                                        ++... +++|+|++||+++.+..+|+|++|++|++
T Consensus       193 ------------------l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         193 ------------------LYDWP-ERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             ------------------HHHHc-CCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence                              22222 35899999999999877999999999975

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.85  E-value=2.9e-22  Score=169.67  Aligned_cols=99  Identities=33%  Similarity=0.400  Sum_probs=83.3

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+                          
T Consensus       103 l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l--------------------------  156 (223)
T TIGR03771       103 LTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF--------------------------  156 (223)
T ss_pred             CchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH--------------------------
Confidence            334445566789999999999999999999999999999999999888887632                          


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             .....+++|+|++||+++.+. .+|+|+++ +|++++.|+++++.++
T Consensus       157 -------~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~  202 (223)
T TIGR03771       157 -------IELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP  202 (223)
T ss_pred             -------HHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence                   222335789999999999876 48999999 8999999999988654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.4e-22  Score=171.20  Aligned_cols=96  Identities=26%  Similarity=0.417  Sum_probs=82.8

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      ..+..+.+||||||||++|||||+.+|+||||||||++||+.+...+++.                              
T Consensus       141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------  190 (252)
T PRK14239        141 RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET------------------------------  190 (252)
T ss_pred             HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH------------------------------
Confidence            45667789999999999999999999999999999999999988887663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++... +++|||++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus       191 ---l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  237 (252)
T PRK14239        191 ---LLGLK-DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN  237 (252)
T ss_pred             ---HHHHh-hCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence               22222 3589999999999875 5899999999999999999998754

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.85  E-value=2.4e-22  Score=170.01  Aligned_cols=95  Identities=26%  Similarity=0.503  Sum_probs=81.9

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ......+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.                             
T Consensus       123 ~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~-----------------------------  173 (230)
T TIGR03410       123 EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV-----------------------------  173 (230)
T ss_pred             HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-----------------------------
Confidence            345667789999999999999999999999999999999999988887663                             


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l  166 (209)
                          +..... .++|||++||+++.+.. +|+|++|++|++++.|+++++
T Consensus       174 ----l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       174 ----IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             ----HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence                222222 37899999999999875 899999999999999999887

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.8e-22  Score=170.87  Aligned_cols=96  Identities=28%  Similarity=0.387  Sum_probs=82.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       139 ~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~------------------------------  188 (250)
T PRK14247        139 RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL------------------------------  188 (250)
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence            34566789999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +.... +++|+|++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       189 ---l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  235 (250)
T PRK14247        189 ---FLELK-KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN  235 (250)
T ss_pred             ---HHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence               22222 3689999999999875 5899999999999999999988654

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.7e-22  Score=173.73  Aligned_cols=101  Identities=22%  Similarity=0.366  Sum_probs=85.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+|||||+||++|||||+.+|+||||||||++||+.+...+++.+                         
T Consensus       131 ~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l-------------------------  185 (271)
T PRK13632        131 GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM-------------------------  185 (271)
T ss_pred             CCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence            3444456677899999999999999999999999999999999999888876632                         


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              ++...+ ++|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus       186 --------~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  232 (271)
T PRK13632        186 --------VDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN  232 (271)
T ss_pred             --------HHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence                    222223 4899999999998877999999999999999999887654

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.85  E-value=3e-22  Score=167.14  Aligned_cols=88  Identities=31%  Similarity=0.535  Sum_probs=74.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+..|||||||||+|||||+.+|++|||||||++||+.+...+++.                          
T Consensus       123 ~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~--------------------------  176 (211)
T cd03225         123 GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL--------------------------  176 (211)
T ss_pred             CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            344455667789999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGS  156 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~  156 (209)
                             +.....+++|||++||+++.+.. ||+|++|++|+
T Consensus       177 -------l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         177 -------LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             -------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence                   22223347899999999999876 89999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.5e-22  Score=195.03  Aligned_cols=97  Identities=21%  Similarity=0.309  Sum_probs=84.2

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.                              
T Consensus       456 ~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~l------------------------------  505 (623)
T PRK10261        456 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINL------------------------------  505 (623)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            44566789999999999999999999999999999999999988888763                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +++... .+.|||+|||+++.+.. ||+|++|++|+|++.|++++++.+
T Consensus       506 ---l~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~  554 (623)
T PRK10261        506 ---LLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN  554 (623)
T ss_pred             ---HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence               333333 37899999999999865 899999999999999999998764

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.4e-22  Score=171.70  Aligned_cols=96  Identities=27%  Similarity=0.440  Sum_probs=82.7

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .+...+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       148 ~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------  197 (259)
T PRK14274        148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL------------------------------  197 (259)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH------------------------------
Confidence            45667789999999999999999999999999999999999988777653                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +.... +++|+|+|||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus       198 ---l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  244 (259)
T PRK14274        198 ---ILKLK-EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN  244 (259)
T ss_pred             ---HHHHh-cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence               22222 3689999999999876 4899999999999999999998754

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.7e-22  Score=171.23  Aligned_cols=96  Identities=26%  Similarity=0.468  Sum_probs=82.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .++..+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       142 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------  191 (251)
T PRK14244        142 RLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL------------------------------  191 (251)
T ss_pred             HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence            45567789999999999999999999999999999999999888777552                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +... .+++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       192 ---l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  238 (251)
T PRK14244        192 ---IQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN  238 (251)
T ss_pred             ---HHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence               2232 24789999999999876 4899999999999999999988654

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=5.2e-22  Score=170.05  Aligned_cols=96  Identities=25%  Similarity=0.432  Sum_probs=82.3

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .+.+.+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       135 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~------------------------------  184 (246)
T PRK14269        135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL------------------------------  184 (246)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH------------------------------
Confidence            34567789999999999999999999999999999999999888777653                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +.... +++|+|++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       185 ---l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  231 (246)
T PRK14269        185 ---LKELS-HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN  231 (246)
T ss_pred             ---HHHHh-CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence               22222 3789999999999876 5899999999999999999988653

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.85  E-value=3.5e-22  Score=166.92  Aligned_cols=92  Identities=30%  Similarity=0.470  Sum_probs=76.2

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                           
T Consensus       118 l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~---------------------------  170 (211)
T cd03298         118 LAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL---------------------------  170 (211)
T ss_pred             CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH---------------------------
Confidence            33344556679999999999999999999999999999999999988887663                           


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG  161 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G  161 (209)
                            ++.... .++|||++||+++.+.. +|+|++|++|++++.|
T Consensus       171 ------l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         171 ------VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             ------HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence                  222222 37899999999999865 8999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.9e-22  Score=172.34  Aligned_cols=97  Identities=31%  Similarity=0.477  Sum_probs=83.0

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ..++..+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.                             
T Consensus       148 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-----------------------------  198 (260)
T PRK10744        148 DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL-----------------------------  198 (260)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHH-----------------------------
Confidence            345667789999999999999999999999999999999999888777663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          ++.. .+++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus       199 ----L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  245 (260)
T PRK10744        199 ----ITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK  245 (260)
T ss_pred             ----HHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence                2222 23679999999999886 5899999999999999999988653

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.7e-22  Score=170.60  Aligned_cols=96  Identities=29%  Similarity=0.394  Sum_probs=82.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------  191 (253)
T PRK14267        142 RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL------------------------------  191 (253)
T ss_pred             hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence            34567789999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++... +++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus       192 ---l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  238 (253)
T PRK14267        192 ---LFELK-KEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN  238 (253)
T ss_pred             ---HHHHh-hCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence               22322 3589999999999876 4899999999999999999988654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.9e-22  Score=172.30  Aligned_cols=100  Identities=25%  Similarity=0.340  Sum_probs=84.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++||||++.+|++|||||||++||+.+...+.+.+                         
T Consensus       132 ~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L-------------------------  186 (265)
T PRK10253        132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL-------------------------  186 (265)
T ss_pred             CCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-------------------------
Confidence            3344456677899999999999999999999999999999999999888886633                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                              ..... .++|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus       187 --------~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (265)
T PRK10253        187 --------SELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT  233 (265)
T ss_pred             --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence                    22222 3789999999999875 589999999999999999988764

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=5.3e-22  Score=172.16  Aligned_cols=96  Identities=28%  Similarity=0.452  Sum_probs=82.4

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      ..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       157 ~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  206 (268)
T PRK14248        157 RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEEL------------------------------  206 (268)
T ss_pred             HHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHH------------------------------
Confidence            34567789999999999999999999999999999999999988877653                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++... +++|||++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus       207 ---l~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  253 (268)
T PRK14248        207 ---ITELK-EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS  253 (268)
T ss_pred             ---HHHHh-cCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence               22322 3579999999999875 5899999999999999999988754

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.9e-22  Score=170.52  Aligned_cols=97  Identities=27%  Similarity=0.448  Sum_probs=83.5

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.                             
T Consensus       139 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-----------------------------  189 (251)
T PRK14249        139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-----------------------------  189 (251)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-----------------------------
Confidence            345677889999999999999999999999999999999999988777652                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          ++.. .+++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       190 ----l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  236 (251)
T PRK14249        190 ----MQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR  236 (251)
T ss_pred             ----HHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence                2222 247899999999999875 799999999999999999988654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.85  E-value=4.3e-22  Score=173.23  Aligned_cols=105  Identities=20%  Similarity=0.310  Sum_probs=87.3

Q ss_pred             CCce-eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         36 GDRT-LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      |+.+ ..+..+..|||||+||++|||||+.+|+||||||||++||+.+...+.+.                         
T Consensus       139 gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~-------------------------  193 (268)
T PRK10419        139 DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL-------------------------  193 (268)
T ss_pred             CCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH-------------------------
Confidence            5543 55777889999999999999999999999999999999999888777663                         


Q ss_pred             cccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccCCc
Q psy12535        115 GVRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGLDF  173 (209)
Q Consensus       115 ~~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~~~  173 (209)
                              ++.... .++|+|++||+++.+. .||+|++|++|++++.|+++++......+
T Consensus       194 --------l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~  246 (268)
T PRK10419        194 --------LKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPA  246 (268)
T ss_pred             --------HHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccCCCCHH
Confidence                    222222 3789999999999987 48999999999999999999987544434

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.85  E-value=4.1e-22  Score=166.75  Aligned_cols=92  Identities=34%  Similarity=0.538  Sum_probs=74.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       121 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  174 (213)
T cd03235         121 GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL--------------------------  174 (213)
T ss_pred             CCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            334445566779999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG  161 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G  161 (209)
                             +.+...+++|||++||+++.+.. +|+|++|++| +++.|
T Consensus       175 -------l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         175 -------LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             -------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence                   22223357899999999998865 8999999886 55443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.85  E-value=4.2e-22  Score=166.44  Aligned_cols=87  Identities=25%  Similarity=0.378  Sum_probs=74.1

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                               
T Consensus       124 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------------  172 (211)
T cd03264         124 AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL-------------------------------  172 (211)
T ss_pred             HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-------------------------------
Confidence            3456679999999999999999999999999999999999988888663                               


Q ss_pred             hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G  161 (209)
                        ++... +++|||++||+++.+. .+|++++|++|++++.|
T Consensus       173 --l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         173 --LSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             --HHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence              22222 2589999999999986 48999999999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.85  E-value=5.7e-22  Score=171.46  Aligned_cols=100  Identities=29%  Similarity=0.431  Sum_probs=84.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHh------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhh
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVY------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSF  109 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (209)
                      |+.......+.+|||||||||+|||||+      .+|++|||||||++||+.+...+.+.                    
T Consensus       123 ~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------  182 (258)
T PRK13548        123 DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL--------------------  182 (258)
T ss_pred             CCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHH--------------------
Confidence            4444556677899999999999999999      59999999999999999988877663                    


Q ss_pred             hcccccccchhhhhhhhc-cccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        110 FGSALGVRGALSLVRTSF-LKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~-~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                                   ++... ..++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       183 -------------l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (258)
T PRK13548        183 -------------ARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT  230 (258)
T ss_pred             -------------HHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence                         22222 34789999999999886 589999999999999999988764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.85  E-value=1.8e-22  Score=170.53  Aligned_cols=89  Identities=27%  Similarity=0.434  Sum_probs=74.7

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ..+...+..||||||||++|||||+.+|++|||||||++||+.+...+++.                             
T Consensus       138 ~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-----------------------------  188 (228)
T PRK10584        138 KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL-----------------------------  188 (228)
T ss_pred             hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-----------------------------
Confidence            334556679999999999999999999999999999999999988777663                             


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeec
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF  160 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~  160 (209)
                          +++... .++|||++||+++.+..+|++++|++|++++.
T Consensus       189 ----l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        189 ----LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             ----HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence                223222 37899999999998877999999999998753

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.85  E-value=6.5e-22  Score=184.75  Aligned_cols=100  Identities=20%  Similarity=0.331  Sum_probs=85.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       124 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------  177 (490)
T PRK10938        124 GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAEL--------------------------  177 (490)
T ss_pred             CCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            444455677889999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                             +.+...+++|||+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus       178 -------l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  224 (490)
T PRK10938        178 -------LASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ  224 (490)
T ss_pred             -------HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence                   33333357899999999998865 89999999999999999888754

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.85  E-value=3.9e-22  Score=166.53  Aligned_cols=93  Identities=28%  Similarity=0.430  Sum_probs=77.8

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       117 ~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~--------------------------  170 (210)
T cd03269         117 ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDV--------------------------  170 (210)
T ss_pred             CChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH--------------------------
Confidence            445555667789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG  161 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G  161 (209)
                             ++....+++|||++||+++.+.. +|++++|++|++++.|
T Consensus       171 -------l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         171 -------IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             -------HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence                   22223347899999999998764 8999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.85  E-value=5.1e-22  Score=173.23  Aligned_cols=109  Identities=16%  Similarity=0.295  Sum_probs=89.6

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +...+...+.+|||||+||++||||++.+|+||||||||++||+.+...+.+.+                          
T Consensus       133 l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L--------------------------  186 (264)
T PRK13546        133 LGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI--------------------------  186 (264)
T ss_pred             CchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH--------------------------
Confidence            344556677899999999999999999999999999999999998877776632                          


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCCchhccC
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD  178 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~  178 (209)
                             ......++|||++||+++.+.. +|+|++|++|++++.|+++++......+.+.+.
T Consensus       187 -------~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  242 (264)
T PRK13546        187 -------YEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFK  242 (264)
T ss_pred             -------HHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHHH
Confidence                   2222357899999999998865 899999999999999999999876555544443

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.2e-22  Score=169.27  Aligned_cols=95  Identities=29%  Similarity=0.461  Sum_probs=81.7

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.                               
T Consensus       141 ~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~-------------------------------  189 (251)
T PRK14251        141 LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET-------------------------------  189 (251)
T ss_pred             hccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHH-------------------------------
Confidence            4567789999999999999999999999999999999999988777663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                        +.+. .+++|||+|||+++.+.. +|+|++|++|++++.|+++++...
T Consensus       190 --l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  236 (251)
T PRK14251        190 --LMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA  236 (251)
T ss_pred             --HHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence              2222 236899999999998764 899999999999999999988644

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=6.2e-22  Score=169.86  Aligned_cols=96  Identities=27%  Similarity=0.425  Sum_probs=82.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||+|||||++||||++.+|+||||||||++||+.+...+.+.                              
T Consensus       140 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------  189 (251)
T PRK14270        140 DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL------------------------------  189 (251)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            34567789999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++... +++|||++||+++.+.. +|+|++|++|++++.|+++++..+
T Consensus       190 ---L~~~~-~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  236 (251)
T PRK14270        190 ---MVELK-KEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE  236 (251)
T ss_pred             ---HHHHH-hCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence               22222 35899999999998764 899999999999999999998654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=8.2e-22  Score=168.82  Aligned_cols=96  Identities=29%  Similarity=0.498  Sum_probs=82.0

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .++..+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       139 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------  188 (250)
T PRK14240        139 RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL------------------------------  188 (250)
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence            34566789999999999999999999999999999999999988877653                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++.. .+++|||++||+++.+.. +|+|++|++|++++.|+++++...
T Consensus       189 ---l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  235 (250)
T PRK14240        189 ---IQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN  235 (250)
T ss_pred             ---HHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence               2222 236899999999998764 899999999999999999988643

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.85  E-value=7.8e-22  Score=171.38  Aligned_cols=96  Identities=26%  Similarity=0.391  Sum_probs=82.0

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+                               
T Consensus       144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-------------------------------  192 (267)
T PRK15112        144 SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM-------------------------------  192 (267)
T ss_pred             hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH-------------------------------
Confidence            3455789999999999999999999999999999999998887776632                               


Q ss_pred             hhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        122 LVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       122 ~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                        ..... .+.|||++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus       193 --~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  241 (267)
T PRK15112        193 --LELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP  241 (267)
T ss_pred             --HHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCC
Confidence              22222 37899999999999875 8999999999999999999987653

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.85  E-value=7.5e-22  Score=169.80  Aligned_cols=100  Identities=27%  Similarity=0.410  Sum_probs=83.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhh-------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYK-------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS  108 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~-------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (209)
                      |+...+...+..||||||||++|||||+.       +|++|||||||++||+.+...+.+.                   
T Consensus       115 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~-------------------  175 (248)
T PRK03695        115 GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRL-------------------  175 (248)
T ss_pred             CCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHH-------------------
Confidence            34445566778999999999999999997       6799999999999999988777653                   


Q ss_pred             hhcccccccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        109 FFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                                    ++....+++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       176 --------------L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  222 (248)
T PRK03695        176 --------------LSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT  222 (248)
T ss_pred             --------------HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence                          2232335789999999999765 589999999999999999988754

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.85  E-value=6.6e-22  Score=162.28  Aligned_cols=91  Identities=34%  Similarity=0.481  Sum_probs=75.2

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      ...+...+.+|||||+||++||||++.+|+++||||||++||+.+...+.+.                            
T Consensus        88 ~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~----------------------------  139 (180)
T cd03214          88 AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL----------------------------  139 (180)
T ss_pred             HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH----------------------------
Confidence            3344556779999999999999999999999999999999999888777663                            


Q ss_pred             chhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535        118 GALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       118 ~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G  161 (209)
                           +.....+ ++|+|++||+++.+. .+|++++|++|++++.|
T Consensus       140 -----l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         140 -----LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             -----HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence                 2222233 689999999999875 58999999999997653

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.84  E-value=4.1e-22  Score=167.51  Aligned_cols=106  Identities=42%  Similarity=0.802  Sum_probs=87.5

Q ss_pred             ceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh-hhhccccC
Q psy12535         19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED-CITGLHTG   97 (209)
Q Consensus        19 ~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~-~~~~~~~~   97 (209)
                      ++++.+++.+.+..+|.|+++.++..+..|||||||||+||||++.+|++|||||||++||+.+...+++. ++..    
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~----  187 (218)
T cd03290         112 AVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF----  187 (218)
T ss_pred             HHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHH----
Confidence            34455566666777788999999999999999999999999999999999999999999999888777652 2211    


Q ss_pred             CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535         98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS  156 (209)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~  156 (209)
                                                  ....+.|+|++||+++.+..+|++++|++|.
T Consensus       188 ----------------------------~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         188 ----------------------------LQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             ----------------------------HhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence                                        1224789999999999887899999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=9.3e-22  Score=168.46  Aligned_cols=95  Identities=26%  Similarity=0.443  Sum_probs=82.1

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.                               
T Consensus       142 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-------------------------------  190 (252)
T PRK14272        142 LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL-------------------------------  190 (252)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-------------------------------
Confidence            3456789999999999999999999999999999999999988777663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                        ++... +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus       191 --l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  237 (252)
T PRK14272        191 --MTDLK-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN  237 (252)
T ss_pred             --HHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence              22222 36899999999999875 899999999999999999998754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.84  E-value=6.4e-22  Score=186.68  Aligned_cols=96  Identities=24%  Similarity=0.445  Sum_probs=82.6

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                               
T Consensus       150 ~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------------  198 (529)
T PRK15134        150 LTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-------------------------------  198 (529)
T ss_pred             HhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-------------------------------
Confidence            3556789999999999999999999999999999999999988888663                               


Q ss_pred             hhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        121 SLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                        +++... .++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       199 --l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  247 (529)
T PRK15134        199 --LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSA  247 (529)
T ss_pred             --HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhC
Confidence              333222 37899999999998764 899999999999999999888653

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.84  E-value=9.1e-22  Score=168.54  Aligned_cols=93  Identities=22%  Similarity=0.345  Sum_probs=78.6

Q ss_pred             eecccce-ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         40 LVGDKGV-SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        40 ~vg~~g~-~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      .++.... .|||||+|||+|||||+.+|+||||||||++||+.+...+.+.                             
T Consensus       143 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-----------------------------  193 (252)
T CHL00131        143 FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEG-----------------------------  193 (252)
T ss_pred             hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-----------------------------
Confidence            3445555 5999999999999999999999999999999999988887663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecc--cceEEEeeccceeecchhhH
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQ  165 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~  165 (209)
                          ++....+++|||++||+++.+..  +|+|++|++|++++.|+++.
T Consensus       194 ----l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~  238 (252)
T CHL00131        194 ----INKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL  238 (252)
T ss_pred             ----HHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence                22323357899999999998864  79999999999999998874

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=8e-22  Score=168.81  Aligned_cols=96  Identities=26%  Similarity=0.411  Sum_probs=81.8

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.+...+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.                             
T Consensus       137 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-----------------------------  187 (249)
T PRK14253        137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL-----------------------------  187 (249)
T ss_pred             HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-----------------------------
Confidence            344567789999999999999999999999999999999999988777663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                          ++... +++|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       188 ----l~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (249)
T PRK14253        188 ----MEELK-KNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS  233 (249)
T ss_pred             ----HHHHh-cCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence                22222 35799999999998775 89999999999999999988754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=8.2e-22  Score=171.25  Aligned_cols=96  Identities=26%  Similarity=0.455  Sum_probs=82.0

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .++..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       156 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  205 (267)
T PRK14235        156 RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL------------------------------  205 (267)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH------------------------------
Confidence            34566789999999999999999999999999999999999988777663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++... +++|||++||+++.+.. +|++++|++|++++.|+++++...
T Consensus       206 ---L~~l~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  252 (267)
T PRK14235        206 ---IDELR-QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN  252 (267)
T ss_pred             ---HHHHh-cCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence               22222 36799999999999864 799999999999999999988643

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.84  E-value=4.3e-22  Score=167.01  Aligned_cols=93  Identities=23%  Similarity=0.454  Sum_probs=77.3

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+|||||+||++||||++.+|+|+||||||++||+.+...+++.+                          
T Consensus       118 l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l--------------------------  171 (213)
T TIGR01277       118 IADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV--------------------------  171 (213)
T ss_pred             cHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH--------------------------
Confidence            333445556799999999999999999999999999999999999888886632                          


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecch
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~  162 (209)
                             ..... .+.|||+|||+++.+. .+|+|++|++|++++.|.
T Consensus       172 -------~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       172 -------KQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             -------HHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence                   22222 3789999999999876 489999999999998764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.84  E-value=1.1e-21  Score=167.48  Aligned_cols=87  Identities=22%  Similarity=0.314  Sum_probs=75.5

Q ss_pred             ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535         47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS  126 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (209)
                      .|||||||||+||||++.+|+||||||||++||+.+...+.+.                                 ++..
T Consensus       145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~---------------------------------l~~l  191 (248)
T PRK09580        145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADG---------------------------------VNSL  191 (248)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH---------------------------------HHHH
Confidence            7999999999999999999999999999999999988777652                                 2222


Q ss_pred             ccccceeeeeeeehheecc--cceEEEeeccceeecchhhHH
Q psy12535        127 FLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       127 ~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~l  166 (209)
                      ...++|||++||+++.+..  +|+|++|++|++++.|+++.+
T Consensus       192 ~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  233 (248)
T PRK09580        192 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  233 (248)
T ss_pred             HhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence            2347899999999998875  799999999999999998754

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.84  E-value=1.4e-21  Score=179.03  Aligned_cols=103  Identities=27%  Similarity=0.473  Sum_probs=87.6

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      +...+.+|||||||||.||.||+++|++||.||||.+||...+.++++                                
T Consensus       151 l~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~--------------------------------  198 (534)
T COG4172         151 LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD--------------------------------  198 (534)
T ss_pred             hhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH--------------------------------
Confidence            344455999999999999999999999999999999999988877766                                


Q ss_pred             hhhhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhc
Q psy12535        121 SLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQL  176 (209)
Q Consensus       121 ~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~  176 (209)
                       +++.+. +-|+.+++||||+..++. +|||+||.+|+|++.|+.++++.+.. .|++.
T Consensus       199 -Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~  256 (534)
T COG4172         199 -LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRK  256 (534)
T ss_pred             -HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHH
Confidence             333333 348999999999999986 69999999999999999999998764 45544

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.84  E-value=8.3e-22  Score=185.42  Aligned_cols=101  Identities=23%  Similarity=0.385  Sum_probs=84.8

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       157 gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------  210 (520)
T TIGR03269       157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA--------------------------  210 (520)
T ss_pred             CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH--------------------------
Confidence            344445667789999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             +++... .++|||+|||+++.+. .||+|++|++|+++..|+++++...
T Consensus       211 -------l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  259 (520)
T TIGR03269       211 -------LEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV  259 (520)
T ss_pred             -------HHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence                   223222 3789999999999986 4899999999999999998887653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=9.9e-22  Score=170.05  Aligned_cols=97  Identities=25%  Similarity=0.456  Sum_probs=83.1

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .++..+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.+                             
T Consensus       143 ~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l-----------------------------  193 (261)
T PRK14258        143 KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI-----------------------------  193 (261)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-----------------------------
Confidence            346677899999999999999999999999999999999999888776632                             


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeec-----cceeecchhhHHhhc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEK-----GSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~-----G~i~~~G~~~~l~~~  169 (209)
                          ..... .++|||+|||+++.+.. ||+|++|++     |++++.|+++++..+
T Consensus       194 ----~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~  246 (261)
T PRK14258        194 ----QSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS  246 (261)
T ss_pred             ----HHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence                22222 37899999999998864 799999999     999999999998754

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=9.1e-22  Score=171.46  Aligned_cols=97  Identities=28%  Similarity=0.450  Sum_probs=83.4

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ..+...+..||||||||++|||||+.+|+||||||||++||+.+...+.+.                             
T Consensus       159 ~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~-----------------------------  209 (271)
T PRK14238        159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEEL-----------------------------  209 (271)
T ss_pred             HHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH-----------------------------
Confidence            345667889999999999999999999999999999999999988877663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          +.... +++|||++||+++.+. .||++++|++|++++.|+++++..+
T Consensus       210 ----l~~~~-~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~  256 (271)
T PRK14238        210 ----VQELK-KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN  256 (271)
T ss_pred             ----HHHHH-cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence                22222 3689999999999876 4899999999999999999998654

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.84  E-value=9e-22  Score=186.38  Aligned_cols=102  Identities=23%  Similarity=0.383  Sum_probs=81.6

Q ss_pred             hhhhccCCCCCceeeccc---ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccc
Q psy12535         27 KEDFAQLPSGDRTLVGDK---GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS  103 (209)
Q Consensus        27 ~~~i~~lp~g~~t~vg~~---g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
                      .++++.++.+..+..+++   |.+||||||||++||||++++|++||||||||+||+.++..+.+.+...          
T Consensus       426 ~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~----------  495 (547)
T PRK10522        426 EKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPL----------  495 (547)
T ss_pred             HHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH----------
Confidence            344555555444444433   7899999999999999999999999999999999999988876643211          


Q ss_pred             cchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535        104 RWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF  160 (209)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~  160 (209)
                                            ....++|+|+|||+++.+..+|+|++|++|++++.
T Consensus       496 ----------------------~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        496 ----------------------LQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL  530 (547)
T ss_pred             ----------------------HHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence                                  11247899999999999889999999999999876

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.84  E-value=6.5e-22  Score=165.21  Aligned_cols=89  Identities=22%  Similarity=0.374  Sum_probs=73.9

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       125 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~--------------------------  178 (214)
T cd03292         125 GLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNL--------------------------  178 (214)
T ss_pred             CCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH--------------------------
Confidence            333344556679999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV  157 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i  157 (209)
                             ++....+++|||++||+++.+.. ||++++|++|++
T Consensus       179 -------l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         179 -------LKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             -------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence                   33323357899999999999875 899999999975

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.84  E-value=8.3e-22  Score=185.94  Aligned_cols=97  Identities=25%  Similarity=0.438  Sum_probs=83.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.+                             
T Consensus       418 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-----------------------------  468 (529)
T PRK15134        418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALL-----------------------------  468 (529)
T ss_pred             HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHH-----------------------------
Confidence            345667899999999999999999999999999999999999888887632                             


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          +.... .++|||+|||+++.+. .||+|++|++|++++.|+++++.++
T Consensus       469 ----~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  516 (529)
T PRK15134        469 ----KSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA  516 (529)
T ss_pred             ----HHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence                22222 3789999999999876 4899999999999999999998754

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.84  E-value=7e-22  Score=171.63  Aligned_cols=96  Identities=32%  Similarity=0.462  Sum_probs=80.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+                         
T Consensus       122 gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L-------------------------  176 (257)
T PRK11247        122 GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI-------------------------  176 (257)
T ss_pred             CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-------------------------
Confidence            4444556777899999999999999999999999999999999999888776632                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhh
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTT  164 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~  164 (209)
                              ..... .++|||+|||+++.+. .||+|++|++|++++.|+.+
T Consensus       177 --------~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        177 --------ESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             --------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence                    22222 3789999999999875 58999999999999888764

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.84  E-value=9.8e-22  Score=171.99  Aligned_cols=100  Identities=31%  Similarity=0.513  Sum_probs=85.9

Q ss_pred             CCceeecccceecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccch
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG  106 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (209)
                      |+.+.++..+.+|||||+|||+|||||+         .+|++|||||||++||+.+...+.+.                 
T Consensus       134 ~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~-----------------  196 (272)
T PRK13547        134 GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT-----------------  196 (272)
T ss_pred             CcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHH-----------------
Confidence            5666777888999999999999999999         49999999999999999988888663                 


Q ss_pred             hhhhcccccccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        107 RSFFGSALGVRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                                      ++....+ ++|||+|||+++.+. .||++++|++|++++.|+++++..
T Consensus       197 ----------------l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  244 (272)
T PRK13547        197 ----------------VRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT  244 (272)
T ss_pred             ----------------HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence                            2222233 789999999999886 589999999999999999988754

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.84  E-value=9e-22  Score=166.97  Aligned_cols=93  Identities=26%  Similarity=0.344  Sum_probs=77.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.........+||||||||++||||++.+|+++||||||++||+.+...+++.+                         
T Consensus       131 ~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l-------------------------  185 (224)
T cd03220         131 ELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL-------------------------  185 (224)
T ss_pred             CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence            3344455667899999999999999999999999999999999999888876632                         


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G  161 (209)
                              .....+++|||++||+++.+. .+|+|++|++|++++.|
T Consensus       186 --------~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         186 --------RELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             --------HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence                    222234789999999999876 48999999999998765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.1e-21  Score=168.23  Aligned_cols=97  Identities=28%  Similarity=0.445  Sum_probs=82.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       141 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------  190 (252)
T PRK14255        141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENM------------------------------  190 (252)
T ss_pred             HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence            34567789999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                         ++... +++|+|+|||+++.+. .+|+|++|++|++++.|++.++..+.
T Consensus       191 ---l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  238 (252)
T PRK14255        191 ---LLELR-DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP  238 (252)
T ss_pred             ---HHHHH-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence               22222 2579999999999986 48999999999999999998887543

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.3e-21  Score=168.06  Aligned_cols=95  Identities=25%  Similarity=0.439  Sum_probs=81.6

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      .+..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                               
T Consensus       142 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~-------------------------------  190 (252)
T PRK14256        142 LKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEEL-------------------------------  190 (252)
T ss_pred             hhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-------------------------------
Confidence            4456779999999999999999999999999999999999988877663                               


Q ss_pred             hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                        ++... +++|||++||+++.+. .||++++|++|++++.|+++++...
T Consensus       191 --l~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  237 (252)
T PRK14256        191 --IEELK-EKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT  237 (252)
T ss_pred             --HHHHH-hCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence              22222 3579999999999875 5899999999999999999988654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.2e-22  Score=190.26  Aligned_cols=97  Identities=25%  Similarity=0.463  Sum_probs=83.9

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .+...+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+                               
T Consensus       161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-------------------------------  209 (623)
T PRK10261        161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-------------------------------  209 (623)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-------------------------------
Confidence            4567788999999999999999999999999999999999998888766                               


Q ss_pred             hhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                        +++.+..+ |+|||+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus       210 --ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~~  259 (623)
T PRK10261        210 --LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA  259 (623)
T ss_pred             --HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhcC
Confidence              33333333 8899999999998764 899999999999999999988653

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.2e-21  Score=168.24  Aligned_cols=97  Identities=31%  Similarity=0.450  Sum_probs=83.4

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.++..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                             
T Consensus       141 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~-----------------------------  191 (253)
T PRK14261        141 DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDL-----------------------------  191 (253)
T ss_pred             HHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence            445677889999999999999999999999999999999999988877653                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          ++... +++|||++||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus       192 ----l~~~~-~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  238 (253)
T PRK14261        192 ----IEDLK-KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN  238 (253)
T ss_pred             ----HHHHh-hCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhC
Confidence                22222 3579999999999986 5899999999999999999988654

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.2e-21  Score=170.63  Aligned_cols=97  Identities=29%  Similarity=0.438  Sum_probs=82.8

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.++..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                             
T Consensus       160 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-----------------------------  210 (272)
T PRK14236        160 DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL-----------------------------  210 (272)
T ss_pred             HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence            345677889999999999999999999999999999999999988777653                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          +.+.. ++.|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus       211 ----L~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  257 (272)
T PRK14236        211 ----ITELK-SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS  257 (272)
T ss_pred             ----HHHHH-hCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence                22222 3679999999999875 5899999999999999999988643

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.84  E-value=8.6e-22  Score=166.08  Aligned_cols=97  Identities=22%  Similarity=0.288  Sum_probs=80.9

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++......+.+|||||+||++||||++.+|++|||||||++||+.+...+.+.                          
T Consensus       113 ~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~--------------------------  166 (223)
T TIGR03740       113 DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELREL--------------------------  166 (223)
T ss_pred             CCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHH--------------------------
Confidence            344445566779999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhH
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQ  165 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~  165 (209)
                             +.....+++|||++||+++.+. .+|+|++|++|++++.|++.+
T Consensus       167 -------L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       167 -------IRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             -------HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence                   2232334789999999999885 589999999999999988754

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.84  E-value=1.4e-21  Score=166.49  Aligned_cols=101  Identities=28%  Similarity=0.434  Sum_probs=84.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+|||||+||++||||++.+|+++||||||++||+.+...+.+.+                         
T Consensus       118 ~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l-------------------------  172 (235)
T cd03299         118 GIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL-------------------------  172 (235)
T ss_pred             CChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH-------------------------
Confidence            3334455667799999999999999999999999999999999999888776632                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              +.... .++|+|++||+++.+. .+|+|++|++|++++.|+++++.+.
T Consensus       173 --------~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  220 (235)
T cd03299         173 --------KKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK  220 (235)
T ss_pred             --------HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence                    22222 3789999999999876 4899999999999999999887653

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.84  E-value=1.4e-21  Score=166.12  Aligned_cols=101  Identities=27%  Similarity=0.437  Sum_probs=84.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+.....+||+||+||++|||||+.+|+++||||||++||+.+...+.+.+                         
T Consensus       119 ~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l-------------------------  173 (232)
T cd03300         119 QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL-------------------------  173 (232)
T ss_pred             CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-------------------------
Confidence            4444556667799999999999999999999999999999999999888776632                         


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              .....+ ++|||++||+++.+. .+|+|++|++|++.+.|+++++...
T Consensus       174 --------~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~  221 (232)
T cd03300         174 --------KRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE  221 (232)
T ss_pred             --------HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence                    222222 789999999999876 4899999999999999998887653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.84  E-value=9.2e-22  Score=164.50  Aligned_cols=84  Identities=23%  Similarity=0.464  Sum_probs=71.2

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       130 ~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  179 (214)
T TIGR02673       130 KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL------------------------------  179 (214)
T ss_pred             hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence            34455679999999999999999999999999999999999988887663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGS  156 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~  156 (209)
                         ++....+++|||++||+++.+.. ||+|++|++|+
T Consensus       180 ---l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       180 ---LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             ---HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence               33323357899999999998875 89999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.6e-21  Score=166.96  Aligned_cols=96  Identities=27%  Similarity=0.466  Sum_probs=82.2

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      ..+..+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       139 ~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------  188 (250)
T PRK14262        139 ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL------------------------------  188 (250)
T ss_pred             HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHH------------------------------
Confidence            35667789999999999999999999999999999999999988877653                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         +.... +++|+|++||+++.+. .+|+|++|++|+++..|+++++...
T Consensus       189 ---l~~~~-~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  235 (250)
T PRK14262        189 ---LEELS-ENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER  235 (250)
T ss_pred             ---HHHHh-cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence               22222 3689999999999765 5899999999999999999988654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.1e-21  Score=184.30  Aligned_cols=99  Identities=17%  Similarity=0.273  Sum_probs=83.7

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.........+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                           
T Consensus       135 l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~---------------------------  187 (510)
T PRK09700        135 LKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI---------------------------  187 (510)
T ss_pred             CCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH---------------------------
Confidence            33345666789999999999999999999999999999999999988888663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                            +++...+++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       188 ------l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (510)
T PRK09700        188 ------MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN  234 (510)
T ss_pred             ------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence                  33333358899999999999864 89999999999999999887643

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.8e-21  Score=168.91  Aligned_cols=95  Identities=29%  Similarity=0.482  Sum_probs=81.6

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      .+..+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                               
T Consensus       145 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------------  193 (264)
T PRK14243        145 LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL-------------------------------  193 (264)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-------------------------------
Confidence            4567789999999999999999999999999999999999988887663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEee---------ccceeecchhhHHhhc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE---------KGSVEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~---------~G~i~~~G~~~~l~~~  169 (209)
                        +.... +++|||++||+++.+.. ||+|++|+         +|++++.|+++++..+
T Consensus       194 --L~~~~-~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~  249 (264)
T PRK14243        194 --MHELK-EQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS  249 (264)
T ss_pred             --HHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence              22222 35799999999998764 79999998         7999999999999754

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.5e-21  Score=168.34  Aligned_cols=96  Identities=26%  Similarity=0.444  Sum_probs=81.7

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------  190 (258)
T PRK14241        141 RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDL------------------------------  190 (258)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence            44567789999999999999999999999999999999999888777653                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEee------ccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLE------KGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~------~G~i~~~G~~~~l~~~  169 (209)
                         +... .+++|||++||+++.+. .+|+|++|+      +|+|++.|+++++...
T Consensus       191 ---l~~~-~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~  243 (258)
T PRK14241        191 ---INEL-KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN  243 (258)
T ss_pred             ---HHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhC
Confidence               2222 23579999999999875 589999996      7999999999998653

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.6e-21  Score=169.76  Aligned_cols=99  Identities=28%  Similarity=0.461  Sum_probs=82.8

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      ...+...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.                            
T Consensus       145 ~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~----------------------------  196 (269)
T PRK14259        145 KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEET----------------------------  196 (269)
T ss_pred             hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH----------------------------
Confidence            3445667789999999999999999999999999999999999988877663                            


Q ss_pred             chhhhhhhhccccceeeeeeeehheec-ccceEEEeec-----------cceeecchhhHHhhcc
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEK-----------GSVEAFGTTTQLLASG  170 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~-----------G~i~~~G~~~~l~~~~  170 (209)
                           +.+. .+++|||++||+++.+. .||+|++|++           |++++.|+++++..+.
T Consensus       197 -----l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~  255 (269)
T PRK14259        197 -----MHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSP  255 (269)
T ss_pred             -----HHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhCc
Confidence                 2222 23689999999999876 5899999996           6689999999987643

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.3e-21  Score=170.32  Aligned_cols=99  Identities=30%  Similarity=0.421  Sum_probs=82.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       131 gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  184 (272)
T PRK15056        131 DMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISL--------------------------  184 (272)
T ss_pred             CChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH--------------------------
Confidence            333445566779999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                             +.....+++|||++||+++.+. .||+++++ +|++++.|+++++..
T Consensus       185 -------L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~  230 (272)
T PRK15056        185 -------LRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT  230 (272)
T ss_pred             -------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence                   2333335789999999999875 58999877 899999999988753

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1.2e-21  Score=183.95  Aligned_cols=94  Identities=16%  Similarity=0.310  Sum_probs=81.2

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                              
T Consensus       398 ~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  447 (506)
T PRK13549        398 SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKL------------------------------  447 (506)
T ss_pred             CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHH------------------------------
Confidence            34667789999999999999999999999999999999999988888663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l  166 (209)
                         +.....+++|||++||+++.+.. ||++++|++|+++..|+.+++
T Consensus       448 ---l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        448 ---INQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             ---HHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence               22333458899999999998865 899999999999999888765

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.84  E-value=1.1e-21  Score=163.62  Aligned_cols=89  Identities=26%  Similarity=0.470  Sum_probs=75.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       124 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~--------------------------  177 (213)
T cd03262         124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV--------------------------  177 (213)
T ss_pred             CCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence            445556677789999999999999999999999999999999999888777663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccce
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSV  157 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i  157 (209)
                             +......++|||++||+++.+. .+|+|++|++|++
T Consensus       178 -------l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         178 -------MKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             -------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence                   2222334789999999999986 4899999999975

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.84  E-value=1.9e-21  Score=162.29  Aligned_cols=89  Identities=27%  Similarity=0.555  Sum_probs=76.6

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ++..+..|||||+||++||||++.+|+++||||||++||+.+...+.+.                               
T Consensus       119 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-------------------------------  167 (207)
T cd03369         119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKT-------------------------------  167 (207)
T ss_pred             ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH-------------------------------
Confidence            4567789999999999999999999999999999999999888777552                               


Q ss_pred             hhhhhhccccceeeeeeeehheecccceEEEeeccceeecchh
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTT  163 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~  163 (209)
                        ++.. .+++|+|++||+++.+..+|++++|++|++.+.|++
T Consensus       168 --l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         168 --IREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             --HHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence              3332 247899999999998877999999999999887753

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.9e-21  Score=170.10  Aligned_cols=97  Identities=32%  Similarity=0.448  Sum_probs=83.1

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.+...+.+|||||+||++|||||+.+|+||||||||++||+.+...+++.                             
T Consensus       155 ~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~-----------------------------  205 (276)
T PRK14271        155 DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF-----------------------------  205 (276)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-----------------------------
Confidence            345667889999999999999999999999999999999999988877663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          +.+.. +++|||++||+++.+. .+|+|++|++|++++.|+++++.+.
T Consensus       206 ----L~~~~-~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  252 (276)
T PRK14271        206 ----IRSLA-DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS  252 (276)
T ss_pred             ----HHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence                22222 2479999999999876 4899999999999999999998764

>PRK10908 cell division protein FtsE; Provisional

Probab=99.84  E-value=1.3e-21  Score=164.79  Aligned_cols=88  Identities=24%  Similarity=0.397  Sum_probs=74.1

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                             
T Consensus       129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-----------------------------  179 (222)
T PRK10908        129 DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL-----------------------------  179 (222)
T ss_pred             hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH-----------------------------
Confidence            344566789999999999999999999999999999999999888777663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceee
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEA  159 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~  159 (209)
                          +.....++.|+|++||+++.+.. +|+|++|++|+++.
T Consensus       180 ----l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        180 ----FEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             ----HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence                22222347899999999999875 79999999999853

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=1.2e-21  Score=184.02  Aligned_cols=98  Identities=16%  Similarity=0.233  Sum_probs=83.0

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.........+|||||||||+|||||+.+|+||||||||++||+.....+++.                           
T Consensus       133 l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~---------------------------  185 (506)
T PRK13549        133 LDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI---------------------------  185 (506)
T ss_pred             CCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH---------------------------
Confidence            33445667789999999999999999999999999999999999988888663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                            +.+...+++|||+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus       186 ------l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  231 (506)
T PRK13549        186 ------IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT  231 (506)
T ss_pred             ------HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence                  22323357899999999998865 8999999999999999887764

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.83  E-value=2.1e-21  Score=158.91  Aligned_cols=83  Identities=34%  Similarity=0.608  Sum_probs=72.7

Q ss_pred             ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR  124 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (209)
                      +..|||||+||++||||++.+|++|||||||++||+.+...+++.+                                 .
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l---------------------------------~  142 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI---------------------------------F  142 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH---------------------------------H
Confidence            6789999999999999999999999999999999999888776632                                 2


Q ss_pred             hhccccceeeeeeeehheecccceEEEeeccceeecc
Q psy12535        125 TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       125 ~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G  161 (209)
                      ... +++|||++||+++.+..+|++++|++|++++.|
T Consensus       143 ~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         143 EVL-KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG  178 (178)
T ss_pred             HHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence            222 478999999999998879999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.83  E-value=2e-21  Score=165.54  Aligned_cols=88  Identities=26%  Similarity=0.402  Sum_probs=76.4

Q ss_pred             ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ....+.+||||||||++|||||+.+|  ++|||||||++||+.+...+++.+                            
T Consensus       131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l----------------------------  182 (226)
T cd03270         131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETL----------------------------  182 (226)
T ss_pred             ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHH----------------------------
Confidence            56778899999999999999999998  599999999999999888876632                            


Q ss_pred             hhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFG  161 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G  161 (209)
                           +....++.|+|+|||+++.+..||+|++|      ++|+|+++|
T Consensus       183 -----~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         183 -----KRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             -----HHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence                 22233588999999999988789999999      999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.83  E-value=1.6e-21  Score=183.57  Aligned_cols=99  Identities=17%  Similarity=0.367  Sum_probs=84.1

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.........+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                           
T Consensus       130 l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~---------------------------  182 (510)
T PRK15439        130 CQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR---------------------------  182 (510)
T ss_pred             CCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH---------------------------
Confidence            33445667789999999999999999999999999999999999988888663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                            ++....+++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       183 ------l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (510)
T PRK15439        183 ------IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST  229 (510)
T ss_pred             ------HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence                  3333335789999999999886 489999999999999999888754

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2e-21  Score=170.75  Aligned_cols=96  Identities=27%  Similarity=0.451  Sum_probs=82.3

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+..|||||||||+|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       175 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~------------------------------  224 (286)
T PRK14275        175 RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDL------------------------------  224 (286)
T ss_pred             HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence            34566789999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++... +++|||++||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus       225 ---L~~~~-~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~  271 (286)
T PRK14275        225 ---IQELR-GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN  271 (286)
T ss_pred             ---HHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence               22222 3579999999999976 4899999999999999999988654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.83  E-value=1.7e-21  Score=183.36  Aligned_cols=96  Identities=17%  Similarity=0.399  Sum_probs=82.8

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       396 ~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~------------------------------  445 (510)
T PRK15439        396 HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQL------------------------------  445 (510)
T ss_pred             CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHH------------------------------
Confidence            45667789999999999999999999999999999999999988888663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                         ++....++.|||+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus       446 ---l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  492 (510)
T PRK15439        446 ---IRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV  492 (510)
T ss_pred             ---HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence               23333357899999999999875 89999999999999998877653

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.7e-21  Score=182.20  Aligned_cols=99  Identities=22%  Similarity=0.252  Sum_probs=83.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       123 ~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------  176 (491)
T PRK10982        123 DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI--------------------------  176 (491)
T ss_pred             CCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH--------------------------
Confidence            334445667789999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                             ++.....++|||+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus       177 -------l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  222 (491)
T PRK10982        177 -------IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT  222 (491)
T ss_pred             -------HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence                   2232335789999999999876 48999999999999999887763

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.4e-21  Score=168.36  Aligned_cols=97  Identities=27%  Similarity=0.439  Sum_probs=83.2

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.++..+.+|||||+||++||||++.+|++|||||||++||+.+...+.+.                             
T Consensus       155 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-----------------------------  205 (267)
T PRK14237        155 DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET-----------------------------  205 (267)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence            345677889999999999999999999999999999999999888777663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          +... .++.|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus       206 ----l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  252 (267)
T PRK14237        206 ----MFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN  252 (267)
T ss_pred             ----HHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence                2222 23689999999999875 5899999999999999999998653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.8e-21  Score=168.73  Aligned_cols=96  Identities=32%  Similarity=0.563  Sum_probs=82.3

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.+                             
T Consensus       154 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L-----------------------------  204 (274)
T PRK14265        154 KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELC-----------------------------  204 (274)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH-----------------------------
Confidence            345667899999999999999999999999999999999999888776632                             


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEee---------ccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLE---------KGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~---------~G~i~~~G~~~~l~~~  169 (209)
                          .... +++|||++||+++.+. .+|++++|+         +|++++.|+++++..+
T Consensus       205 ----~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~  259 (274)
T PRK14265        205 ----LELK-EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGS  259 (274)
T ss_pred             ----HHHh-cCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence                2222 3689999999999886 589999997         8999999999998754

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.83  E-value=2.8e-21  Score=161.14  Aligned_cols=88  Identities=26%  Similarity=0.385  Sum_probs=75.2

Q ss_pred             eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535         46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT  125 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (209)
                      .+|||||+||++||||++.+|++|||||||++||+.+...+++.                                 +.+
T Consensus       103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~---------------------------------L~~  149 (200)
T cd03217         103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEV---------------------------------INK  149 (200)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH---------------------------------HHH
Confidence            58999999999999999999999999999999999888777663                                 222


Q ss_pred             hccccceeeeeeeehheec--ccceEEEeeccceeecchhhHHh
Q psy12535        126 SFLKEKTVMLITHQIQYLT--HVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       126 ~~~~~~TiIvitH~l~~l~--~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      ...+++|||++||+++.+.  .+|++++|++|++.+.|+. ++.
T Consensus       150 ~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~-~~~  192 (200)
T cd03217         150 LREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK-ELA  192 (200)
T ss_pred             HHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH-HHH
Confidence            2234789999999999887  5899999999999999844 443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.83  E-value=2.5e-21  Score=163.78  Aligned_cols=91  Identities=27%  Similarity=0.437  Sum_probs=75.1

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      ..........|||||+||++|||||+.+|++|||||||++||+.+...+.+.                            
T Consensus       134 ~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~----------------------------  185 (226)
T cd03234         134 TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST----------------------------  185 (226)
T ss_pred             hhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHH----------------------------
Confidence            3344556789999999999999999999999999999999999988877663                            


Q ss_pred             chhhhhhhhccccceeeeeeeeh-hee-cccceEEEeeccceeecc
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQI-QYL-THVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l-~~l-~~~DrV~~L~~G~i~~~G  161 (209)
                           +.+....+.|+|++||++ +.+ ..+|+|++|++|++++.|
T Consensus       186 -----l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         186 -----LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             -----HHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence                 222233478999999998 355 568999999999998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.83  E-value=2.4e-21  Score=158.04  Aligned_cols=77  Identities=35%  Similarity=0.548  Sum_probs=67.8

Q ss_pred             cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535         48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF  127 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (209)
                      |||||+||++||||++.+|++|||||||++||+.+...+.+.+                                 +...
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l---------------------------------~~~~  143 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI---------------------------------AALK  143 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHH---------------------------------HHHH
Confidence            9999999999999999999999999999999999888886632                                 2223


Q ss_pred             cccceeeeeeeehheecccceEEEeeccce
Q psy12535        128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSV  157 (209)
Q Consensus       128 ~~~~TiIvitH~l~~l~~~DrV~~L~~G~i  157 (209)
                      .+++|+|++||+++.+..+|+|++|++|++
T Consensus       144 ~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         144 AAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             hCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            347899999999998877999999999975

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.83  E-value=2e-21  Score=182.79  Aligned_cols=96  Identities=20%  Similarity=0.425  Sum_probs=82.4

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+                             
T Consensus       420 ~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l-----------------------------  470 (520)
T TIGR03269       420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI-----------------------------  470 (520)
T ss_pred             hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-----------------------------
Confidence            346677899999999999999999999999999999999999888887632                             


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                          +.... .+.|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       471 ----~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       471 ----LKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             ----HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence                22222 37899999999998864 89999999999999999888753

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.83  E-value=1.9e-21  Score=182.44  Aligned_cols=96  Identities=19%  Similarity=0.280  Sum_probs=81.5

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ........+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                             
T Consensus       133 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-----------------------------  183 (501)
T PRK10762        133 FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV-----------------------------  183 (501)
T ss_pred             CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHH-----------------------------
Confidence            344566789999999999999999999999999999999999988888663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                          ++.....++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       184 ----l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (501)
T PRK10762        184 ----IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT  229 (501)
T ss_pred             ----HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence                22323347899999999998864 8999999999999999887653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=2e-21  Score=168.05  Aligned_cols=96  Identities=30%  Similarity=0.381  Sum_probs=79.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       117 gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------  170 (255)
T PRK11248        117 GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL--------------------------  170 (255)
T ss_pred             CChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH--------------------------
Confidence            344445567789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhc-cccceeeeeeeehheecc-cceEEEee--ccceeecchhh
Q psy12535        116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLE--KGSVEAFGTTT  164 (209)
Q Consensus       116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~--~G~i~~~G~~~  164 (209)
                             +.... ..++|||++||+++.+.. ||+|++|+  +|++++.++.+
T Consensus       171 -------L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        171 -------LLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence                   22222 247899999999998764 89999998  59999887653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4e-21  Score=165.93  Aligned_cols=96  Identities=31%  Similarity=0.497  Sum_probs=81.8

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      ..+..+..|||||+||++|||||+.+|++|||||||++||+.+...+.+.                              
T Consensus       143 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  192 (259)
T PRK14260        143 KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEEL------------------------------  192 (259)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence            34567789999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEee-----ccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE-----KGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~-----~G~i~~~G~~~~l~~~  169 (209)
                         ++... +++|||++||+++.+.. ||++++|+     +|++++.|+++++.+.
T Consensus       193 ---l~~~~-~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~  244 (259)
T PRK14260        193 ---IHSLR-SELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN  244 (259)
T ss_pred             ---HHHHh-cCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcC
Confidence               22222 35899999999999865 89999997     5999999999998653

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.2e-21  Score=166.59  Aligned_cols=95  Identities=33%  Similarity=0.500  Sum_probs=81.5

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      .+..+.+|||||+||++|||||+.+|++|||||||++||+.+...+++.                               
T Consensus       143 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~-------------------------------  191 (261)
T PRK14263        143 LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEEL-------------------------------  191 (261)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-------------------------------
Confidence            3456779999999999999999999999999999999999988887663                               


Q ss_pred             hhhhhhccccceeeeeeeehheec-ccceEEEee--------ccceeecchhhHHhhc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLE--------KGSVEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~--------~G~i~~~G~~~~l~~~  169 (209)
                        +++. .+++|+|++||+++.+. .+|+|++|+        +|++++.|+++++.++
T Consensus       192 --l~~~-~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~~  246 (261)
T PRK14263        192 --MVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN  246 (261)
T ss_pred             --HHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHhC
Confidence              2232 24689999999999875 589999996        8999999999998754

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.83  E-value=3.1e-21  Score=164.58  Aligned_cols=97  Identities=32%  Similarity=0.473  Sum_probs=82.3

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ........+||+||+||++|||||+.+|+++||||||++||+.+...+.+.+                            
T Consensus       122 ~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l----------------------------  173 (237)
T TIGR00968       122 GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL----------------------------  173 (237)
T ss_pred             hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH----------------------------
Confidence            3345566799999999999999999999999999999999999888776632                            


Q ss_pred             hhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535        119 ALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       119 ~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                           .....+ ++|||++||+++.+.. +|+|++|++|++++.|+.+++..
T Consensus       174 -----~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  220 (237)
T TIGR00968       174 -----RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD  220 (237)
T ss_pred             -----HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence                 222223 7899999999998754 89999999999999999998864

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.4e-21  Score=166.85  Aligned_cols=97  Identities=28%  Similarity=0.459  Sum_probs=83.0

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.++..+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.                             
T Consensus       153 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~-----------------------------  203 (265)
T PRK14252        153 DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL-----------------------------  203 (265)
T ss_pred             HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-----------------------------
Confidence            445677789999999999999999999999999999999999988777663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                          +++.. ++.|||+|||+++.+. .||+|++|++|++++.|+.+++..+
T Consensus       204 ----l~~l~-~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  250 (265)
T PRK14252        204 ----ISDLK-NKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIK  250 (265)
T ss_pred             ----HHHHH-hCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence                22222 3579999999999986 5899999999999999999888653

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.6e-21  Score=164.22  Aligned_cols=95  Identities=25%  Similarity=0.436  Sum_probs=81.7

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ++..+..||+|||||++|||||+.+|+||||||||++||+.+...+.+.                               
T Consensus       140 ~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~-------------------------------  188 (250)
T PRK14266        140 LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL-------------------------------  188 (250)
T ss_pred             HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHH-------------------------------
Confidence            4566789999999999999999999999999999999999888777653                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                        ++.. .++.|||++||+++.+.. +|+|++|++|++++.|+++++...
T Consensus       189 --l~~~-~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~  235 (250)
T PRK14266        189 --IHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN  235 (250)
T ss_pred             --HHHH-hcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence              2222 236899999999998765 799999999999999999998644

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.6e-21  Score=170.71  Aligned_cols=99  Identities=26%  Similarity=0.452  Sum_probs=83.0

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.+.++..+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.                           
T Consensus       190 ~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~---------------------------  242 (305)
T PRK14264        190 VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDL---------------------------  242 (305)
T ss_pred             hhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence            34556777889999999999999999999999999999999999888877663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceE-EEeeccceeecchhhHHhhc
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHV-MLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV-~~L~~G~i~~~G~~~~l~~~  169 (209)
                            ++... +++|||++||+++.+. .+|++ ++|++|++++.|+++++...
T Consensus       243 ------L~~~~-~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~  290 (305)
T PRK14264        243 ------IEELA-EEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFEN  290 (305)
T ss_pred             ------HHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHhC
Confidence                  22222 2479999999999976 48997 57799999999999988653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3e-21  Score=181.07  Aligned_cols=95  Identities=17%  Similarity=0.292  Sum_probs=81.6

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                              
T Consensus       389 ~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  438 (501)
T PRK11288        389 SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNV------------------------------  438 (501)
T ss_pred             CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHH------------------------------
Confidence            34566789999999999999999999999999999999999988888663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                         +......+.|||+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus       439 ---l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        439 ---IYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT  484 (501)
T ss_pred             ---HHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence               22333458899999999999864 8999999999999999887654

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.82  E-value=3.2e-21  Score=182.67  Aligned_cols=106  Identities=19%  Similarity=0.331  Sum_probs=87.3

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+++.                           
T Consensus       133 L~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Llel---------------------------  185 (549)
T PRK13545        133 IGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDK---------------------------  185 (549)
T ss_pred             ChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH---------------------------
Confidence            33345566789999999999999999999999999999999999988777663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCCchh
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLDFTQ  175 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~  175 (209)
                            +......++|||++||+++.+.. ||+|++|++|++++.|+++++......|..
T Consensus       186 ------L~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~  239 (549)
T PRK13545        186 ------MNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK  239 (549)
T ss_pred             ------HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHH
Confidence                  22223357899999999998865 899999999999999999998766444433

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.82  E-value=3.6e-21  Score=164.29  Aligned_cols=92  Identities=23%  Similarity=0.333  Sum_probs=76.3

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.........+||||||||++|||||+.+|++|||||||++||+.+...+.+.+                          
T Consensus       143 l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l--------------------------  196 (236)
T cd03267         143 LEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL--------------------------  196 (236)
T ss_pred             ChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH--------------------------
Confidence            333345567789999999999999999999999999999999999888886632                          


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG  161 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G  161 (209)
                             ..... .++|||++||+++.+.. +|+|++|++|++++.|
T Consensus       197 -------~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         197 -------KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             -------HHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence                   22222 37899999999998765 8999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.4e-21  Score=168.09  Aligned_cols=96  Identities=29%  Similarity=0.507  Sum_probs=80.6

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .++.++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       173 ~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~------------------------------  222 (285)
T PRK14254        173 QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL------------------------------  222 (285)
T ss_pred             HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH------------------------------
Confidence            34667789999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEE-EeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVM-LLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~-~L~~G~i~~~G~~~~l~~~  169 (209)
                         ++... +++|||++||+++.+.. +|+++ +|++|+|++.|+++++..+
T Consensus       223 ---L~~~~-~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~  270 (285)
T PRK14254        223 ---IEELA-EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN  270 (285)
T ss_pred             ---HHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence               22222 24799999999999765 89975 6799999999999887643

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.82  E-value=4.7e-21  Score=155.39  Aligned_cols=80  Identities=29%  Similarity=0.473  Sum_probs=69.3

Q ss_pred             ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535         47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS  126 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (209)
                      +|||||+||++||||++.+|++|||||||++||+.+...+.+.                                 ++..
T Consensus        82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~---------------------------------l~~~  128 (163)
T cd03216          82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKV---------------------------------IRRL  128 (163)
T ss_pred             ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH---------------------------------HHHH
Confidence            3999999999999999999999999999999999988887663                                 2232


Q ss_pred             ccccceeeeeeeehheecc-cceEEEeeccceee
Q psy12535        127 FLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEA  159 (209)
Q Consensus       127 ~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~  159 (209)
                      ..++.|+|++||+++.+.. +|++++|++|++++
T Consensus       129 ~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         129 RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            3347899999999998764 89999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.82  E-value=4.6e-21  Score=168.84  Aligned_cols=102  Identities=24%  Similarity=0.442  Sum_probs=86.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |...++.+.+..|||||||||||+|||+..|++|+||||+|+||...+.+++-                           
T Consensus       117 GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilp---------------------------  169 (352)
T COG4148         117 GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP---------------------------  169 (352)
T ss_pred             CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHH---------------------------
Confidence            56666777778999999999999999999999999999999999987777654                           


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                            .+.++.. -+.-|++|||.++++. .+|+|++|++|+|.+.|..++++.+.
T Consensus       170 ------ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~  220 (352)
T COG4148         170 ------YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP  220 (352)
T ss_pred             ------HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence                  2223222 2568999999999875 58999999999999999999998753

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.82  E-value=3.7e-21  Score=180.44  Aligned_cols=94  Identities=20%  Similarity=0.377  Sum_probs=81.3

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       388 ~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  437 (501)
T PRK10762        388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQL------------------------------  437 (501)
T ss_pred             CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHH------------------------------
Confidence            35667789999999999999999999999999999999999988888663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l  166 (209)
                         ++....+|.|||++||+++.+.. ||+|++|++|+++..|+++++
T Consensus       438 ---l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        438 ---INQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             ---HHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence               33333358899999999998865 899999999999998887765

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.82  E-value=5.5e-21  Score=158.48  Aligned_cols=82  Identities=22%  Similarity=0.414  Sum_probs=70.4

Q ss_pred             ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535         47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS  126 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (209)
                      +|||||+||++||||++.+|++|||||||++||+.+...+++.                                 ++..
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~---------------------------------l~~~  154 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF---------------------------------LKKL  154 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHH---------------------------------HHHH
Confidence            8999999999999999999999999999999999988887663                                 2222


Q ss_pred             ccccceeeeeeeehhe-e-cccceEEEeec-cceeecc
Q psy12535        127 FLKEKTVMLITHQIQY-L-THVDHVMLLEK-GSVEAFG  161 (209)
Q Consensus       127 ~~~~~TiIvitH~l~~-l-~~~DrV~~L~~-G~i~~~G  161 (209)
                      ...++|+|++||+++. + ..+|+|++|++ |++++.|
T Consensus       155 ~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         155 ADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             HHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            2347899999999984 4 56899999999 9998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.82  E-value=5.1e-21  Score=165.49  Aligned_cols=108  Identities=23%  Similarity=0.405  Sum_probs=85.3

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +...+...+..||||||||++|||||+.+|++|||||||++||+.+...+++.+                          
T Consensus       110 l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L--------------------------  163 (251)
T PRK09544        110 AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI--------------------------  163 (251)
T ss_pred             ChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH--------------------------
Confidence            333445567799999999999999999999999999999999999888776632                          


Q ss_pred             cchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccCCchhccCC
Q psy12535        117 RGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA  179 (209)
Q Consensus       117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~~  179 (209)
                             .....+ ++|||++||+++.+. .+|+|++|++ ++++.|+++++... ..+..++..
T Consensus       164 -------~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~-~~~~~~~~~  219 (251)
T PRK09544        164 -------DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH-PEFISMFGP  219 (251)
T ss_pred             -------HHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC-HHHHHHhCC
Confidence                   222223 789999999999975 5899999964 79999999988643 344455543

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.9e-21  Score=179.26  Aligned_cols=91  Identities=15%  Similarity=0.341  Sum_probs=78.0

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       402 ~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~------------------------------  451 (510)
T PRK09700        402 SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV------------------------------  451 (510)
T ss_pred             CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHH------------------------------
Confidence            35667789999999999999999999999999999999999988888663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchh
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTT  163 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~  163 (209)
                         ++....+++|||+|||+++.+. .||+|++|++|+++..++.
T Consensus       452 ---l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        452 ---MRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             ---HHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence               3332335889999999999876 4899999999999987765

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.82  E-value=4.4e-21  Score=162.52  Aligned_cols=93  Identities=27%  Similarity=0.343  Sum_probs=77.7

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.....+.+|||||+|||+|||||+.+|++|||||||++||+.+...+.+.                             
T Consensus       129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-----------------------------  179 (225)
T PRK10247        129 TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEI-----------------------------  179 (225)
T ss_pred             HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence            456677889999999999999999999999999999999999887777653                             


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehheecccceEEEee-ccceeecchhh
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLE-KGSVEAFGTTT  164 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~-~G~i~~~G~~~  164 (209)
                          +..... .++|||++||+++.+..||++++|+ ++..+++|+++
T Consensus       180 ----l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        180 ----IHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             ----HHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence                222222 3789999999999988899999994 66777788774

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.82  E-value=1.3e-20  Score=181.40  Aligned_cols=102  Identities=24%  Similarity=0.375  Sum_probs=87.7

Q ss_pred             CCCCceeeccc--ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535         34 PSGDRTLVGDK--GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG  111 (209)
Q Consensus        34 p~g~~t~vg~~--g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (209)
                      ....+|.+|+.  +..|||||||||+|||+|+.+|+|++|||||+|||+.+...+++.+                     
T Consensus       151 ~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L---------------------  209 (617)
T TIGR00955       151 RKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL---------------------  209 (617)
T ss_pred             hhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHH---------------------
Confidence            34668999974  4789999999999999999999999999999999999999887743                     


Q ss_pred             ccccccchhhhhhhhccccceeeeeeeehh-e-ecccceEEEeeccceeecchhhHHhh
Q psy12535        112 SALGVRGALSLVRTSFLKEKTVMLITHQIQ-Y-LTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~-~-l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                                  ++...+|+|||+++|+++ . ...+|+|++|++|++++.|+++++..
T Consensus       210 ------------~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~  256 (617)
T TIGR00955       210 ------------KGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP  256 (617)
T ss_pred             ------------HHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence                        222345899999999986 3 46789999999999999999998854

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.1e-20  Score=163.62  Aligned_cols=96  Identities=25%  Similarity=0.451  Sum_probs=82.3

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      .+..+..||+|||||++|||||+.+|+++||||||++||+.+...+.+.                               
T Consensus       147 ~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~-------------------------------  195 (257)
T PRK14246        147 LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL-------------------------------  195 (257)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHH-------------------------------
Confidence            4567789999999999999999999999999999999999888777653                               


Q ss_pred             hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                        +... .++.|||++||+++.+. .||++++|++|++++.|+++++....
T Consensus       196 --l~~~-~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~  243 (257)
T PRK14246        196 --ITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP  243 (257)
T ss_pred             --HHHH-hcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence              2222 23589999999999885 58999999999999999999987643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.81  E-value=5.8e-21  Score=178.80  Aligned_cols=91  Identities=20%  Similarity=0.337  Sum_probs=78.4

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      ..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                                 
T Consensus       137 ~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~---------------------------------  183 (500)
T TIGR02633       137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI---------------------------------  183 (500)
T ss_pred             CchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH---------------------------------
Confidence            44678999999999999999999999999999999999988888663                                 


Q ss_pred             hhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l  166 (209)
                      +++...+++|||+|||+++.+.. ||+|++|++|+++..|+++++
T Consensus       184 l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (500)
T TIGR02633       184 IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM  228 (500)
T ss_pred             HHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence            23333358899999999999865 899999999999998877654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.81  E-value=8.4e-21  Score=157.77  Aligned_cols=82  Identities=29%  Similarity=0.469  Sum_probs=70.0

Q ss_pred             ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535         47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS  126 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (209)
                      +|||||+||++|||||+.+|+++||||||++||+.+.+.+++.                                 +++.
T Consensus       111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~---------------------------------l~~~  157 (194)
T cd03213         111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL---------------------------------LRRL  157 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH---------------------------------HHHH
Confidence            7999999999999999999999999999999999988877663                                 2232


Q ss_pred             ccccceeeeeeeehh-eec-ccceEEEeeccceeecc
Q psy12535        127 FLKEKTVMLITHQIQ-YLT-HVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       127 ~~~~~TiIvitH~l~-~l~-~~DrV~~L~~G~i~~~G  161 (209)
                      ..+++|+|++||+++ .+. .+|+|++|++|++++.|
T Consensus       158 ~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         158 ADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             HhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            334889999999996 454 58999999999998654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.81  E-value=1.5e-20  Score=182.47  Aligned_cols=100  Identities=28%  Similarity=0.441  Sum_probs=85.3

Q ss_pred             CCceeecc-cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         36 GDRTLVGD-KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        36 g~~t~vg~-~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      ..+|.+|. .+.+|||||||||+|||+|+.+|+||||||||+|||+.+...+.+.                         
T Consensus       194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~-------------------------  248 (659)
T PLN03211        194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT-------------------------  248 (659)
T ss_pred             hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH-------------------------
Confidence            34777765 4678999999999999999999999999999999999988888663                         


Q ss_pred             cccchhhhhhhhccccceeeeeeeehhe-e-cccceEEEeeccceeecchhhHHhh
Q psy12535        115 GVRGALSLVRTSFLKEKTVMLITHQIQY-L-THVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~-l-~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                              +++...+|+|||++||+++. + ..+|+|++|++|++++.|+++++..
T Consensus       249 --------L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~  296 (659)
T PLN03211        249 --------LGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA  296 (659)
T ss_pred             --------HHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence                    33333468999999999974 4 5689999999999999999998864

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.81  E-value=8.7e-21  Score=155.89  Aligned_cols=77  Identities=27%  Similarity=0.481  Sum_probs=67.2

Q ss_pred             cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535         48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF  127 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (209)
                      ||+|||||++||||++.+|++|||||||++||+.+...+.+.+                                 +...
T Consensus       105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l---------------------------------~~~~  151 (182)
T cd03215         105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI---------------------------------RELA  151 (182)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHH---------------------------------HHHH
Confidence            9999999999999999999999999999999999888876632                                 2222


Q ss_pred             cccceeeeeeeehheecc-cceEEEeeccce
Q psy12535        128 LKEKTVMLITHQIQYLTH-VDHVMLLEKGSV  157 (209)
Q Consensus       128 ~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i  157 (209)
                      .+++|+|++||+++.+.. +|+|++|++|++
T Consensus       152 ~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         152 DAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             HCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            347899999999998865 899999999975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.81  E-value=9.1e-21  Score=177.25  Aligned_cols=91  Identities=20%  Similarity=0.390  Sum_probs=78.3

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||||||+||||++.+|+||||||||+|||+.+...+++.                               
T Consensus       385 ~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~-------------------------------  433 (491)
T PRK10982        385 HRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQL-------------------------------  433 (491)
T ss_pred             cccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHH-------------------------------
Confidence            4667789999999999999999999999999999999999988888763                               


Q ss_pred             hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhh
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTT  164 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~  164 (209)
                        +......++|||++||+++.+. .||+|++|++|+++..++..
T Consensus       434 --l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        434 --IAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             --HHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence              2233345889999999999886 48999999999999776554

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=1.5e-20  Score=162.29  Aligned_cols=103  Identities=27%  Similarity=0.378  Sum_probs=87.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+....++...+||+|||+||.|||||+.+|++||||||.+||.+.....+.+.                          
T Consensus       138 gL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~--------------------------  191 (250)
T COG0411         138 GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL--------------------------  191 (250)
T ss_pred             CCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHH--------------------------
Confidence            444455666779999999999999999999999999999999999888777663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccC
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                             +++... .+.||++|.|+++.+. .||||+||+.|+++++|+|+++.++..
T Consensus       192 -------i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~  242 (250)
T COG0411         192 -------IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR  242 (250)
T ss_pred             -------HHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCHH
Confidence                   333343 4689999999999875 589999999999999999999987653

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.81  E-value=4.7e-21  Score=159.08  Aligned_cols=92  Identities=26%  Similarity=0.355  Sum_probs=77.7

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +-..+.-.+.+||||++|||+||||++..|+||+.||||.+||..+...+.+.++..                       
T Consensus       136 Lg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-----------------------  192 (228)
T COG4181         136 LGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-----------------------  192 (228)
T ss_pred             cccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-----------------------
Confidence            333444455699999999999999999999999999999999999999987743321                       


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF  160 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~  160 (209)
                               ....|+|.|+||||......|+|.+-|++|++++.
T Consensus       193 ---------nre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~  227 (228)
T COG4181         193 ---------NRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED  227 (228)
T ss_pred             ---------hhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence                     13468999999999999999999999999999753

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.81  E-value=1.1e-20  Score=177.02  Aligned_cols=92  Identities=16%  Similarity=0.262  Sum_probs=77.8

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+..|||||||||+|||||+.+|+||||||||++||+.+...+++.                               
T Consensus       397 ~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------------  445 (500)
T TIGR02633       397 PFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKL-------------------------------  445 (500)
T ss_pred             ccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHH-------------------------------
Confidence            4556779999999999999999999999999999999999988877663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhH
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQ  165 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~  165 (209)
                        +.....++.|||++||+++.+.. ||+|++|++|+++..++.++
T Consensus       446 --l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~  489 (500)
T TIGR02633       446 --INQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA  489 (500)
T ss_pred             --HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence              22333358899999999998865 89999999999988765543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.81  E-value=1.2e-20  Score=153.98  Aligned_cols=77  Identities=30%  Similarity=0.549  Sum_probs=67.4

Q ss_pred             cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535         48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF  127 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (209)
                      |||||+||++|||||+.+|+||||||||++||+.+...+.+.                                 ++...
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~---------------------------------l~~~~  142 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL---------------------------------LRELK  142 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH---------------------------------HHHHH
Confidence            999999999999999999999999999999999988888663                                 33333


Q ss_pred             cccceeeeeeeehheec-ccceEEEeeccce
Q psy12535        128 LKEKTVMLITHQIQYLT-HVDHVMLLEKGSV  157 (209)
Q Consensus       128 ~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i  157 (209)
                      .++.|+|++||+.+.+. .+|++++|++|++
T Consensus       143 ~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         143 KEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             HCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            34789999999999887 5899999999975

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.3e-20  Score=176.79  Aligned_cols=90  Identities=22%  Similarity=0.305  Sum_probs=76.6

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                              
T Consensus       133 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------  182 (501)
T PRK11288        133 DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV------------------------------  182 (501)
T ss_pred             CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH------------------------------
Confidence            34566789999999999999999999999999999999999988887663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecch
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~  162 (209)
                         ++....+++|||+|||+++.+.. ||+|++|++|+++..++
T Consensus       183 ---l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        183 ---IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             ---HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence               22323357899999999998765 89999999999987654

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.81  E-value=1.6e-20  Score=164.33  Aligned_cols=95  Identities=34%  Similarity=0.511  Sum_probs=80.9

Q ss_pred             CCce-eecccceecCCccchhhhhHHHHhhh---cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535         36 GDRT-LVGDKGVSLSGGQRARISLARAVYKR---ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG  111 (209)
Q Consensus        36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~~---p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (209)
                      |+.. .+++...+|||||+||++|||+|+.+   |+++||||||++||+.....+.+.                      
T Consensus       157 gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~----------------------  214 (261)
T cd03271         157 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEV----------------------  214 (261)
T ss_pred             CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHH----------------------
Confidence            4444 36888899999999999999999996   799999999999999988877663                      


Q ss_pred             ccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchh
Q psy12535        112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTT  163 (209)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~  163 (209)
                                 +.....++.|||+|||+++.+..+|+|++|      ++|+|+++|++
T Consensus       215 -----------L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         215 -----------LQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             -----------HHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence                       223333588999999999998889999999      89999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.80  E-value=2.1e-20  Score=154.64  Aligned_cols=88  Identities=27%  Similarity=0.463  Sum_probs=74.4

Q ss_pred             ecccceecCCccchhhhhHHHHhhh--cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKR--ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~--p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ++.++.+||||||||++||||++.+  |+++||||||++||+.+...+.+.+                            
T Consensus        81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l----------------------------  132 (176)
T cd03238          81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI----------------------------  132 (176)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHH----------------------------
Confidence            5677889999999999999999999  9999999999999999888876632                            


Q ss_pred             hhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G  161 (209)
                           +.....++|||++||+++.+..+|++++|++|+....|
T Consensus       133 -----~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~  170 (176)
T cd03238         133 -----KGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGG  170 (176)
T ss_pred             -----HHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCc
Confidence                 22223588999999999988779999999887664443

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.80  E-value=1.6e-20  Score=158.27  Aligned_cols=89  Identities=28%  Similarity=0.478  Sum_probs=74.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.                          
T Consensus       130 ~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~--------------------------  183 (220)
T TIGR02982       130 GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL--------------------------  183 (220)
T ss_pred             CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH--------------------------
Confidence            344455566679999999999999999999999999999999999988777663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccce
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSV  157 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i  157 (209)
                             ++.... .++|+|++||+++....||+|++|++|++
T Consensus       184 -------l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       184 -------MQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             -------HHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence                   222222 37899999999987667899999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.80  E-value=2.1e-20  Score=160.20  Aligned_cols=109  Identities=25%  Similarity=0.441  Sum_probs=91.8

Q ss_pred             hhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchh
Q psy12535         28 EDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR  107 (209)
Q Consensus        28 ~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (209)
                      ...+.+| -+....+.++.+|||||||.+||||||+.+|++|+|||||.||-|...+.+++.+                 
T Consensus       118 ~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i-----------------  179 (237)
T COG0410         118 EVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI-----------------  179 (237)
T ss_pred             HHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHH-----------------
Confidence            3445556 3666778889999999999999999999999999999999999998888887743                 


Q ss_pred             hhhcccccccchhhhhhhhccc-cceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhcc
Q psy12535        108 SFFGSALGVRGALSLVRTSFLK-EKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                      +...++ +.||++|.++.... +.+||.++|++|+|+.+|+.+++..+.
T Consensus       180 ----------------~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~  228 (237)
T COG0410         180 ----------------KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP  228 (237)
T ss_pred             ----------------HHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence                            333433 67999999999985 468999999999999999999998663

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.80  E-value=2.6e-20  Score=160.92  Aligned_cols=99  Identities=24%  Similarity=0.351  Sum_probs=77.9

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.                          
T Consensus       104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------  157 (246)
T cd03237         104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKV--------------------------  157 (246)
T ss_pred             CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            445556677789999999999999999999999999999999999988777653                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeecccee--ecchhhHHh
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVE--AFGTTTQLL  167 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~--~~G~~~~l~  167 (209)
                             ++.... .++|||+|||+++.+.. ||+|++|+++..+  ..+++..+.
T Consensus       158 -------l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~  206 (246)
T cd03237         158 -------IRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR  206 (246)
T ss_pred             -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence                   222222 37899999999999875 8999999764333  345555543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.80  E-value=1.1e-20  Score=183.17  Aligned_cols=101  Identities=21%  Similarity=0.346  Sum_probs=86.4

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      +...++++.+++.+++.. |.|++|..+ .+..||||||||++||||++++|+++|||||||+||+.+...+.+.+    
T Consensus       552 ~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l----  625 (659)
T TIGR00954       552 KDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC----  625 (659)
T ss_pred             HHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH----
Confidence            344566777888887777 889999876 56799999999999999999999999999999999999887776532    


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE  153 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~  153 (209)
                                                   ++   .++|+|+|||+++.+..+|+|++|+
T Consensus       626 -----------------------------~~---~~~tvI~isH~~~~~~~~d~il~l~  652 (659)
T TIGR00954       626 -----------------------------RE---FGITLFSVSHRKSLWKYHEYLLYMD  652 (659)
T ss_pred             -----------------------------HH---cCCEEEEEeCchHHHHhCCEEEEEe
Confidence                                         11   3789999999999998899999996

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.80  E-value=2e-20  Score=157.94  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=80.2

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      .......||+|||||++||||++.+|+++||||||+++|+.+...+.+.+...                           
T Consensus        98 ~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~---------------------------  150 (213)
T PRK15177         98 YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ---------------------------  150 (213)
T ss_pred             hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH---------------------------
Confidence            34556789999999999999999999999999999999998887776532211                           


Q ss_pred             hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             .+++|+|++||+++.+. .||+|++|++|++++.|+.++..+.
T Consensus       151 -------~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  193 (213)
T PRK15177        151 -------LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL  193 (213)
T ss_pred             -------hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence                   13568999999999986 5899999999999999999888643

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=2.9e-20  Score=158.46  Aligned_cols=103  Identities=27%  Similarity=0.434  Sum_probs=82.7

Q ss_pred             ccceecCCccchhhhhHHHHhhh------cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         43 DKGVSLSGGQRARISLARAVYKR------ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~------p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +....|||||||||.+||.|+.-      +++|+||||||+||...+...+.                            
T Consensus       131 R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~----------------------------  182 (259)
T COG4559         131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLR----------------------------  182 (259)
T ss_pred             cchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHH----------------------------
Confidence            33458999999999999999843      35889999999999988777765                            


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccCCchhccCC
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA  179 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~~  179 (209)
                           +.+.+..+|..|++|-||++... +||||++|.+|++++.|++++++... ..+.+|..
T Consensus       183 -----laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~E-tl~~vyg~  240 (259)
T COG4559         183 -----LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE-TLERVYGA  240 (259)
T ss_pred             -----HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHH-HHHHHhCC
Confidence                 33444567889999999999876 58999999999999999999987542 23444433

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.79  E-value=3.9e-20  Score=151.53  Aligned_cols=76  Identities=37%  Similarity=0.548  Sum_probs=66.3

Q ss_pred             cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535         48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF  127 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (209)
                      ||||||||++|||||+.+|++|||||||++||+.++..+++.                                 ++...
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~---------------------------------l~~~~  147 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL---------------------------------LKSLQ  147 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH---------------------------------HHHHH
Confidence            999999999999999999999999999999999988877663                                 22323


Q ss_pred             cc-cceeeeeeeehheec-ccceEEEeeccc
Q psy12535        128 LK-EKTVMLITHQIQYLT-HVDHVMLLEKGS  156 (209)
Q Consensus       128 ~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~  156 (209)
                      .+ ++|+|++||+++.+. .+|++++|++|+
T Consensus       148 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         148 AQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            34 689999999999987 589999999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.79  E-value=7.4e-20  Score=154.76  Aligned_cols=102  Identities=25%  Similarity=0.397  Sum_probs=86.9

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ........+.+||||||+|+.|||||+.+|+.+|||||++|+||.+...+                              
T Consensus       129 i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dI------------------------------  178 (243)
T COG1137         129 ITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI------------------------------  178 (243)
T ss_pred             hHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHH------------------------------
Confidence            34445677889999999999999999999999999999999999755444                              


Q ss_pred             cchhhhhhhhccccceeeeeeeehhe-ecccceEEEeeccceeecchhhHHhhccC
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                         +.+++.+..+|..|+++-|+... +..|||.+++.+|+|..+|+++++.++..
T Consensus       179 ---q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~  231 (243)
T COG1137         179 ---QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED  231 (243)
T ss_pred             ---HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChh
Confidence               33555556678999999998865 77899999999999999999999988753

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.79  E-value=6.3e-20  Score=149.39  Aligned_cols=75  Identities=36%  Similarity=0.657  Sum_probs=65.7

Q ss_pred             cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535         48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF  127 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (209)
                      ||+|||||++|||||+.+|++|||||||++||+.+...+.+.                                 +... 
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~---------------------------------l~~~-  142 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA---------------------------------LRAL-  142 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH---------------------------------HHHh-
Confidence            999999999999999999999999999999999888777663                                 2222 


Q ss_pred             cccceeeeeeeehheecccceEEEeeccc
Q psy12535        128 LKEKTVMLITHQIQYLTHVDHVMLLEKGS  156 (209)
Q Consensus       128 ~~~~TiIvitH~l~~l~~~DrV~~L~~G~  156 (209)
                      .+++|+|++||+++.+..||++++|++|+
T Consensus       143 ~~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228         143 AKGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             cCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            23689999999999987799999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=7.3e-20  Score=172.77  Aligned_cols=94  Identities=19%  Similarity=0.357  Sum_probs=80.7

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.+                             
T Consensus       431 ~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-----------------------------  481 (530)
T PRK15064        431 DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMAL-----------------------------  481 (530)
T ss_pred             HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH-----------------------------
Confidence            456677899999999999999999999999999999999999888776632                             


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~~  169 (209)
                          ...   +.|||+|||+++.+.. ||+|++|++|+++ +.|++.++.+.
T Consensus       482 ----~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        482 ----EKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS  526 (530)
T ss_pred             ----HHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence                221   3599999999998875 8999999999998 88999887654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.78  E-value=5.3e-20  Score=152.85  Aligned_cols=83  Identities=27%  Similarity=0.392  Sum_probs=68.9

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +...++....+|||||+||++|||||+.+|++|||||||++||+.+...+.+.                           
T Consensus       124 l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------  176 (206)
T TIGR03608       124 LNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDL---------------------------  176 (206)
T ss_pred             chhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHH---------------------------
Confidence            33445666789999999999999999999999999999999999988877663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL  152 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L  152 (209)
                            ++.....++|+|++||+++.+..||+|++|
T Consensus       177 ------l~~~~~~~~tii~~sh~~~~~~~~d~i~~l  206 (206)
T TIGR03608       177 ------LLELNDEGKTIIIVTHDPEVAKQADRVIEL  206 (206)
T ss_pred             ------HHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence                  222223478999999999977778999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.78  E-value=1.1e-19  Score=147.80  Aligned_cols=77  Identities=25%  Similarity=0.374  Sum_probs=66.1

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      .+..||||||||++||||++.+|+++||||||++||+.+...+.+.+                                 
T Consensus        88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l---------------------------------  134 (166)
T cd03223          88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL---------------------------------  134 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH---------------------------------
Confidence            45689999999999999999999999999999999999888776632                                 


Q ss_pred             hhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535        124 RTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS  156 (209)
Q Consensus       124 ~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~  156 (209)
                      .+.   ++|+|++||+++....+|+|++|++|-
T Consensus       135 ~~~---~~tiiivsh~~~~~~~~d~i~~l~~~~  164 (166)
T cd03223         135 KEL---GITVISVGHRPSLWKFHDRVLDLDGEG  164 (166)
T ss_pred             HHh---CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence            221   579999999998777789999998753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.78  E-value=1.2e-19  Score=151.74  Aligned_cols=88  Identities=24%  Similarity=0.318  Sum_probs=69.8

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      .......||+||+||++|||||+.+|++|||||||++||+.+++.+.+.+                              
T Consensus       112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l------------------------------  161 (202)
T cd03233         112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI------------------------------  161 (202)
T ss_pred             cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHH------------------------------
Confidence            35567799999999999999999999999999999999999888876632                              


Q ss_pred             hhhhhhccc-cceeeeee-eehheec-ccceEEEeeccceeecc
Q psy12535        121 SLVRTSFLK-EKTVMLIT-HQIQYLT-HVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       121 ~~~~~~~~~-~~TiIvit-H~l~~l~-~~DrV~~L~~G~i~~~G  161 (209)
                         +....+ +.|+|+++ |+.+.+. .+|++++|++|++++.|
T Consensus       162 ---~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         162 ---RTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             ---HHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence               222222 55666655 5556654 58999999999998654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.1e-19  Score=171.48  Aligned_cols=90  Identities=22%  Similarity=0.408  Sum_probs=77.5

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      ....+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                                 
T Consensus       151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~---------------------------------  197 (530)
T PRK15064        151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV---------------------------------  197 (530)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH---------------------------------
Confidence            45679999999999999999999999999999999999988777552                                 


Q ss_pred             hhhhccccceeeeeeeehheecc-cceEEEeeccce-eecchhhHHhh
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV-EAFGTTTQLLA  168 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i-~~~G~~~~l~~  168 (209)
                      +.   ..++|||+|||+++.+.. ||+|++|++|++ ++.|+++++.+
T Consensus       198 l~---~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  242 (530)
T PRK15064        198 LN---ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMT  242 (530)
T ss_pred             HH---hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence            21   137899999999998865 899999999999 47898887753

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.78  E-value=1e-19  Score=169.97  Aligned_cols=88  Identities=18%  Similarity=0.270  Sum_probs=74.0

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       394 ~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~------------------------------  443 (490)
T PRK10938        394 TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRF------------------------------  443 (490)
T ss_pred             hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH------------------------------
Confidence            45666789999999999999999999999999999999999988888763                              


Q ss_pred             hhhhhhhcccc-ceeeeeeeehheecc--cceEEEeeccceeec
Q psy12535        120 LSLVRTSFLKE-KTVMLITHQIQYLTH--VDHVMLLEKGSVEAF  160 (209)
Q Consensus       120 ~~~~~~~~~~~-~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~  160 (209)
                         +.....++ .|||+|||+++.+..  +|+|++|++|+|++.
T Consensus       444 ---L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        444 ---VDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             ---HHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence               22323344 469999999999863  699999999998764

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.78  E-value=9.3e-20  Score=158.05  Aligned_cols=97  Identities=23%  Similarity=0.354  Sum_probs=86.0

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ..+..+||.|++|+|.+..+++++|+++|||||+|||||.+.+.+.+.++                              
T Consensus       125 ~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~------------------------------  174 (300)
T COG4152         125 TKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIF------------------------------  174 (300)
T ss_pred             cchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHH------------------------------
Confidence            45778999999999999999999999999999999999998877766432                              


Q ss_pred             hhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                         ....+|+|||++||+|+.++. ||++++|++|+.+-.|+.+++.++++
T Consensus       175 ---~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G  222 (300)
T COG4152         175 ---ELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG  222 (300)
T ss_pred             ---HHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence               335579999999999999975 99999999999999999999987544

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.77  E-value=1.4e-19  Score=191.77  Aligned_cols=103  Identities=20%  Similarity=0.343  Sum_probs=88.2

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+..........|||||||||+||+||+.+|+||||||||+|||+.+++.+++.                          
T Consensus      2059 gL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~l-------------------------- 2112 (2272)
T TIGR01257      2059 GLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNT-------------------------- 2112 (2272)
T ss_pred             CCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH--------------------------
Confidence            344445666789999999999999999999999999999999999998888763                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                             +.+...+|+|||++||+++.++. ||||++|++|++++.|+++++++..+
T Consensus      2113 -------L~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257      2113 -------IVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred             -------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence                   22323458999999999999875 89999999999999999999987654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.77  E-value=1.8e-19  Score=190.97  Aligned_cols=102  Identities=24%  Similarity=0.318  Sum_probs=88.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||+|||+.+++.+++.                          
T Consensus      1050 gL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~l-------------------------- 1103 (2272)
T TIGR01257      1050 GLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL-------------------------- 1103 (2272)
T ss_pred             CCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH--------------------------
Confidence            444455677789999999999999999999999999999999999988888763                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                             +++. .+|+|||++||+++.+.. +|||++|++|++++.|++.++++..+
T Consensus      1104 -------L~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257      1104 -------LLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred             -------HHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence                   3333 358899999999999864 89999999999999999999987654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.77  E-value=1.9e-19  Score=156.44  Aligned_cols=92  Identities=26%  Similarity=0.386  Sum_probs=75.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+...+...+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.                          
T Consensus       128 gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~--------------------------  181 (255)
T cd03236         128 ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARL--------------------------  181 (255)
T ss_pred             CCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH--------------------------
Confidence            445556778889999999999999999999999999999999999888777653                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG  161 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G  161 (209)
                             ++....+++|||++||+++.+.. ||+|++|+ |++.+.|
T Consensus       182 -------l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~  220 (255)
T cd03236         182 -------IRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG  220 (255)
T ss_pred             -------HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence                   22223347899999999999874 89999994 6676543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.76  E-value=2.1e-19  Score=149.98  Aligned_cols=83  Identities=27%  Similarity=0.259  Sum_probs=68.4

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+||||||||++||||++.+|+++||||||++||+.+...+.+.                           
T Consensus       119 l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------  171 (204)
T PRK13538        119 LAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL---------------------------  171 (204)
T ss_pred             CHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH---------------------------
Confidence            33334556779999999999999999999999999999999999988877653                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheeccc-ceEEEe
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLL  152 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~-DrV~~L  152 (209)
                            +.+....++|||++||+++.+..| +|++++
T Consensus       172 ------l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        172 ------LAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             ------HHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence                  223233478999999999999776 788887

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.76  E-value=3.4e-19  Score=169.46  Aligned_cols=92  Identities=28%  Similarity=0.412  Sum_probs=77.7

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.                               
T Consensus       157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~-------------------------------  205 (556)
T PRK11819        157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-------------------------------  205 (556)
T ss_pred             ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-------------------------------
Confidence            3556789999999999999999999999999999999999888777652                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhh
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLA  168 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~  168 (209)
                        ++..   +.|||+|||+++.+.. +|+|++|++|+++ +.|+++++.+
T Consensus       206 --L~~~---~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  250 (556)
T PRK11819        206 --LHDY---PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE  250 (556)
T ss_pred             --HHhC---CCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence              2221   2499999999999875 7999999999986 7788887643

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.76  E-value=2.1e-19  Score=173.97  Aligned_cols=99  Identities=27%  Similarity=0.420  Sum_probs=86.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++..+...+..||+||+||++|||||+.+|+++||||||++||+.+.+.+.+.                          
T Consensus       133 gl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l--------------------------  186 (648)
T PRK10535        133 GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI--------------------------  186 (648)
T ss_pred             CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH--------------------------
Confidence            555666777889999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                             +.+...+++|+|++||+++.+..||++++|++|+++++|+.++..
T Consensus       187 -------l~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        187 -------LHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             -------HHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence                   333333588999999999988789999999999999999998775

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.76  E-value=3.7e-19  Score=141.87  Aligned_cols=73  Identities=30%  Similarity=0.559  Sum_probs=64.0

Q ss_pred             cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535         48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF  127 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (209)
                      ||+||+||++||||++.+|+++||||||++||+.+...+.+.                                 ++.. 
T Consensus        71 lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~---------------------------------l~~~-  116 (144)
T cd03221          71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA---------------------------------LKEY-  116 (144)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH---------------------------------HHHc-
Confidence            999999999999999999999999999999999988777663                                 2221 


Q ss_pred             cccceeeeeeeehheecc-cceEEEeeccc
Q psy12535        128 LKEKTVMLITHQIQYLTH-VDHVMLLEKGS  156 (209)
Q Consensus       128 ~~~~TiIvitH~l~~l~~-~DrV~~L~~G~  156 (209)
                        ++|+|++||+++.+.. +|++++|++|+
T Consensus       117 --~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221         117 --PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             --CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence              4699999999998865 79999999986

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.76  E-value=4.1e-19  Score=168.69  Aligned_cols=91  Identities=27%  Similarity=0.433  Sum_probs=77.6

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.                                
T Consensus       156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~--------------------------------  203 (552)
T TIGR03719       156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH--------------------------------  203 (552)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH--------------------------------
Confidence            556789999999999999999999999999999999999988877653                                


Q ss_pred             hhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhh
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLA  168 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~  168 (209)
                       +...   +.|||+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus       204 -L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~  248 (552)
T TIGR03719       204 -LQEY---PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE  248 (552)
T ss_pred             -HHhC---CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence             2221   3599999999999875 7999999999975 7788887654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.76  E-value=3.1e-19  Score=147.79  Aligned_cols=84  Identities=24%  Similarity=0.353  Sum_probs=69.2

Q ss_pred             cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535         48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF  127 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (209)
                      ||||||||++||||++.+|+++||||||++||+.+...+.+.+                                 ....
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l---------------------------------~~~~  118 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI---------------------------------RRLS  118 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH---------------------------------HHHH
Confidence            9999999999999999999999999999999999888776632                                 2222


Q ss_pred             cc-cceeeeeeeehheecc-cceEEEeeccceeec--chhh
Q psy12535        128 LK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAF--GTTT  164 (209)
Q Consensus       128 ~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~--G~~~  164 (209)
                      .+ +.|+|++||+++.+.. +|++++|+++-.+.+  |.+.
T Consensus       119 ~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~  159 (177)
T cd03222         119 EEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK  159 (177)
T ss_pred             HcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence            33 3899999999999874 899999988755533  5444

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.76  E-value=4.1e-19  Score=149.42  Aligned_cols=84  Identities=21%  Similarity=0.242  Sum_probs=69.6

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      ..........||||||||++||||++.+|++|||||||++||+.+...+.+.                            
T Consensus       128 ~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~----------------------------  179 (214)
T PRK13543        128 AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRM----------------------------  179 (214)
T ss_pred             hhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH----------------------------
Confidence            3344566789999999999999999999999999999999999988777652                            


Q ss_pred             chhhhhhhhccccceeeeeeeehheecc-cceEEEeec
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEK  154 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~  154 (209)
                           +.....+++|+|++||+++.+.. +|++++|+.
T Consensus       180 -----l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        180 -----ISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             -----HHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence                 22223357899999999999865 799999863

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=4.6e-19  Score=171.45  Aligned_cols=91  Identities=29%  Similarity=0.474  Sum_probs=78.6

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      +...+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.+                              
T Consensus       424 ~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L------------------------------  473 (638)
T PRK10636        424 VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL------------------------------  473 (638)
T ss_pred             hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH------------------------------
Confidence            45567899999999999999999999999999999999999888776632                              


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL  167 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~  167 (209)
                         ...   +.|||+|||+++++.. ||+|++|++|+++ ..|+++++.
T Consensus       474 ---~~~---~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        474 ---IDF---EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             ---HHc---CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence               222   3499999999999865 8999999999997 789998874

>PRK13409 putative ATPase RIL; Provisional

Probab=99.75  E-value=3.9e-19  Score=170.76  Aligned_cols=93  Identities=27%  Similarity=0.457  Sum_probs=76.7

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~--------------------------  495 (590)
T PRK13409        442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKA--------------------------  495 (590)
T ss_pred             CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence            444455677789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecch
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~  162 (209)
                             ++.... .++|||+|||+++++.. +|+|++|+ |++...|.
T Consensus       496 -------l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~  536 (590)
T PRK13409        496 -------IRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH  536 (590)
T ss_pred             -------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence                   333323 37899999999998865 89999996 58877665

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.75  E-value=6.7e-19  Score=176.04  Aligned_cols=101  Identities=27%  Similarity=0.383  Sum_probs=86.5

Q ss_pred             CCcee-ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535         36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS  112 (209)
Q Consensus        36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (209)
                      |+..+ +++...+|||||+|||.||++|+.+|  ++|||||||+|||+.....+++.                       
T Consensus       475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~-----------------------  531 (924)
T TIGR00630       475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINT-----------------------  531 (924)
T ss_pred             cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHH-----------------------
Confidence            34433 57788999999999999999999986  89999999999999988887663                       


Q ss_pred             cccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhc
Q psy12535        113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~  169 (209)
                                ++++..+|+|||+|+|+++.+..||+|++|      ++|+|++.|+++++...
T Consensus       532 ----------L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~  584 (924)
T TIGR00630       532 ----------LKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILAN  584 (924)
T ss_pred             ----------HHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence                      333344689999999999998889999999      89999999999998644

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.75  E-value=9.1e-19  Score=169.08  Aligned_cols=91  Identities=26%  Similarity=0.396  Sum_probs=76.4

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      .....+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                                
T Consensus       151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~--------------------------------  198 (635)
T PRK11147        151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGF--------------------------------  198 (635)
T ss_pred             CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH--------------------------------
Confidence            456789999999999999999999999999999999999887766552                                


Q ss_pred             hhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhh
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLA  168 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~  168 (209)
                       +...   +.|||+|||+..++.. ||+|++|++|+++ ..|+++++..
T Consensus       199 -L~~~---~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~  243 (635)
T PRK11147        199 -LKTF---QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLL  243 (635)
T ss_pred             -HHhC---CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence             2222   3599999999999875 7999999999997 4688876643

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.75  E-value=7.5e-19  Score=176.01  Aligned_cols=101  Identities=24%  Similarity=0.366  Sum_probs=86.9

Q ss_pred             CCcee-ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535         36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS  112 (209)
Q Consensus        36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (209)
                      |+..+ +++...+|||||+|||+||+||+.+|  ++|||||||++||+.....+++.                       
T Consensus       477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~-----------------------  533 (943)
T PRK00349        477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIET-----------------------  533 (943)
T ss_pred             ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHH-----------------------
Confidence            44444 57788899999999999999999997  99999999999999988887663                       


Q ss_pred             cccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhc
Q psy12535        113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~  169 (209)
                                ++++..+|+|||+|+|+++.+..+|+|++|      ++|+|+..|+++++...
T Consensus       534 ----------L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~  586 (943)
T PRK00349        534 ----------LKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN  586 (943)
T ss_pred             ----------HHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence                      333344689999999999998889999999      99999999999998654

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=5.4e-19  Score=149.48  Aligned_cols=98  Identities=28%  Similarity=0.423  Sum_probs=84.0

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      .+-++...+||||||||.-||..++.+.+.++||||.++||.+....+++.+                            
T Consensus       127 ~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~L----------------------------  178 (252)
T COG4604         127 DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKIL----------------------------  178 (252)
T ss_pred             chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHH----------------------------
Confidence            3344555699999999999999999999999999999999999888887643                            


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                           ++... -+||||+|-||.+++.. +|+|+-|++|+++.+|++++++..
T Consensus       179 -----rrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~  226 (252)
T COG4604         179 -----RRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP  226 (252)
T ss_pred             -----HHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence                 22222 38999999999999875 799999999999999999999865

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.2e-18  Score=168.64  Aligned_cols=92  Identities=28%  Similarity=0.420  Sum_probs=76.6

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .......+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       142 ~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~------------------------------  191 (638)
T PRK10636        142 QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW------------------------------  191 (638)
T ss_pred             hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHH------------------------------
Confidence            34566789999999999999999999999999999999999877665442                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL  167 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~  167 (209)
                         +..   -+.|||+|||++.++.. ||+|++|++|++. ..|+++...
T Consensus       192 ---L~~---~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~  235 (638)
T PRK10636        192 ---LKS---YQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE  235 (638)
T ss_pred             ---HHh---CCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence               222   14699999999999875 7999999999996 568777664

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.74  E-value=1.1e-18  Score=181.01  Aligned_cols=96  Identities=23%  Similarity=0.374  Sum_probs=82.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcc-eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRAD-VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~-illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      -.++.+|+.+.+|||||||||+|||+|+.+|+ ||+|||||||||+.+...+.+.                         
T Consensus       890 ~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~-------------------------  944 (1394)
T TIGR00956       890 YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKL-------------------------  944 (1394)
T ss_pred             hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHH-------------------------
Confidence            45788888788999999999999999999997 9999999999999988888663                         


Q ss_pred             cccchhhhhhhhccccceeeeeeeehhee--cccceEEEeecc-ceeecchhh
Q psy12535        115 GVRGALSLVRTSFLKEKTVMLITHQIQYL--THVDHVMLLEKG-SVEAFGTTT  164 (209)
Q Consensus       115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l--~~~DrV~~L~~G-~i~~~G~~~  164 (209)
                              +++...+|+|||+++|+++..  ..+|+|++|++| ++++.|++.
T Consensus       945 --------L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~  989 (1394)
T TIGR00956       945 --------MRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG  989 (1394)
T ss_pred             --------HHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence                    333334689999999999863  568999999987 999999863

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.74  E-value=6.8e-19  Score=145.02  Aligned_cols=74  Identities=31%  Similarity=0.466  Sum_probs=60.8

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.                          
T Consensus       116 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~--------------------------  169 (190)
T TIGR01166       116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI--------------------------  169 (190)
T ss_pred             CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence            344445667789999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehhe
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQY  142 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~  142 (209)
                             +.....+++|||++||+++.
T Consensus       170 -------l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       170 -------LRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             -------HHHHHHcCCEEEEEeecccc
Confidence                   22323357899999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=2.3e-19  Score=151.63  Aligned_cols=91  Identities=30%  Similarity=0.351  Sum_probs=74.8

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+-+||||||||+.|||||+.+|++|+||||+++||.-+.+++-+.++.                             
T Consensus       127 ~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld-----------------------------  177 (259)
T COG4525         127 HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD-----------------------------  177 (259)
T ss_pred             ccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH-----------------------------
Confidence            345569999999999999999999999999999999999988888664332                             


Q ss_pred             hhhhhccccceeeeeeeehheec-ccceEEEee--ccceeecchhh
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLE--KGSVEAFGTTT  164 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~--~G~i~~~G~~~  164 (209)
                         -+...|+.+++|||+++..- .++++++|.  .|+|++.-+++
T Consensus       178 ---lw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         178 ---LWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             ---HHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence               22346899999999999865 589999997  57888765443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.74  E-value=9.1e-19  Score=147.53  Aligned_cols=78  Identities=23%  Similarity=0.328  Sum_probs=66.3

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.                                
T Consensus       144 ~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------------  191 (224)
T TIGR02324       144 HLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL--------------------------------  191 (224)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------------
Confidence            456789999999999999999999999999999999999988887663                                


Q ss_pred             hhhhhccccceeeeeeeehheec-ccceEEEe
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLL  152 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L  152 (209)
                       ++....+++|||++||+++.+. .||+|+.+
T Consensus       192 -l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       192 -IAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             -HHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence             2232334789999999999886 58999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.73  E-value=1.4e-18  Score=145.55  Aligned_cols=80  Identities=26%  Similarity=0.278  Sum_probs=67.2

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ......+||||||||++||||++.+|++|||||||++||+.+...+.+.                               
T Consensus       121 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------------  169 (207)
T PRK13539        121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAEL-------------------------------  169 (207)
T ss_pred             HcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-------------------------------
Confidence            3455678999999999999999999999999999999999988887663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                        +.....+++|||++||+++.+.. |+++.+..
T Consensus       170 --l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~  200 (207)
T PRK13539        170 --IRAHLAQGGIVIAATHIPLGLPG-ARELDLGP  200 (207)
T ss_pred             --HHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence              22223357899999999999887 99988854

>PLN03073 ABC transporter F family; Provisional

Probab=99.73  E-value=2.1e-18  Score=168.98  Aligned_cols=91  Identities=24%  Similarity=0.443  Sum_probs=76.4

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||||||+||||++.+|++|||||||++||+.+...+.+.+                              
T Consensus       621 ~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L------------------------------  670 (718)
T PLN03073        621 ALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL------------------------------  670 (718)
T ss_pred             hcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH------------------------------
Confidence            34567799999999999999999999999999999999998877765522                              


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL  167 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~  167 (209)
                         ...   +.|||+|||++..+.. ||+|++|++|+++ ..|+++++.
T Consensus       671 ---~~~---~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~  713 (718)
T PLN03073        671 ---VLF---QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK  713 (718)
T ss_pred             ---HHc---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence               111   2499999999999875 8999999999998 678877653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.72  E-value=1.8e-18  Score=144.16  Aligned_cols=79  Identities=27%  Similarity=0.307  Sum_probs=65.2

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ......+||||||||++|||||+.+|+++||||||++||+.+...+.+.                               
T Consensus       119 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------------  167 (201)
T cd03231         119 EDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA-------------------------------  167 (201)
T ss_pred             hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-------------------------------
Confidence            3456679999999999999999999999999999999999988877663                               


Q ss_pred             hhhhhhccccceeeeeeeehheec-ccceEEEe
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLL  152 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L  152 (209)
                        +......++|+|++||+...+. .+++++++
T Consensus       168 --l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         168 --MAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             --HHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence              2222334789999999877654 57999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.72  E-value=3e-18  Score=162.82  Aligned_cols=92  Identities=27%  Similarity=0.400  Sum_probs=75.9

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                               
T Consensus       437 ~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------------  485 (552)
T TIGR03719       437 QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEA-------------------------------  485 (552)
T ss_pred             hcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-------------------------------
Confidence            4556789999999999999999999999999999999999988887663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEeec-ccee-ecchhhHHhh
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEK-GSVE-AFGTTTQLLA  168 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~-G~i~-~~G~~~~l~~  168 (209)
                        +...   +.|||+|||+++.+.. ||+|++|++ |++. ..|+.+++.+
T Consensus       486 --l~~~---~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~  531 (552)
T TIGR03719       486 --LLEF---AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE  531 (552)
T ss_pred             --HHHC---CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence              2222   2389999999998875 899999986 5776 5677766543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.72  E-value=5.2e-18  Score=175.97  Aligned_cols=100  Identities=25%  Similarity=0.299  Sum_probs=83.4

Q ss_pred             CCceeecc-cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         36 GDRTLVGD-KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        36 g~~t~vg~-~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      -.+|.+|. ....|||||||||+||++|+.+|+|++|||||+|||+.++..+.+.                         
T Consensus       197 ~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~-------------------------  251 (1394)
T TIGR00956       197 TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA-------------------------  251 (1394)
T ss_pred             ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH-------------------------
Confidence            34677764 5678999999999999999999999999999999999988888763                         


Q ss_pred             cccchhhhhhhhcc-ccceeeeeeeeh-hee-cccceEEEeeccceeecchhhHHhh
Q psy12535        115 GVRGALSLVRTSFL-KEKTVMLITHQI-QYL-THVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       115 ~~~~~~~~~~~~~~-~~~TiIvitH~l-~~l-~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                              +++... .|+|||+++|++ +.+ ..+|+|++|++|++++.|+++++..
T Consensus       252 --------L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~  300 (1394)
T TIGR00956       252 --------LKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ  300 (1394)
T ss_pred             --------HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence                    333333 388999999997 344 4589999999999999999988843

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.72  E-value=3.6e-18  Score=171.13  Aligned_cols=105  Identities=27%  Similarity=0.457  Sum_probs=89.0

Q ss_pred             CCce-eecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535         36 GDRT-LVGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG  111 (209)
Q Consensus        36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (209)
                      |+.. .++....+|||||+|||+|||+|+.+|   +++||||||++||+.....+++.                      
T Consensus       818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~----------------------  875 (943)
T PRK00349        818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEV----------------------  875 (943)
T ss_pred             CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHH----------------------
Confidence            4443 367888999999999999999999999   99999999999999988877663                      


Q ss_pred             ccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCc
Q psy12535        112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDF  173 (209)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~  173 (209)
                                 +.+...+|+|||+|||+++.+..+|+|+.|      ++|+|++.|+++++..+...+
T Consensus       876 -----------L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~  932 (943)
T PRK00349        876 -----------LHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY  932 (943)
T ss_pred             -----------HHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence                       223333588999999999998889999999      799999999999998765443

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.72  E-value=3.2e-18  Score=137.02  Aligned_cols=76  Identities=38%  Similarity=0.596  Sum_probs=65.3

Q ss_pred             cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535         48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF  127 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (209)
                      ||+||+||++||||++.+|+++||||||++||..+...+.+.+                                 ....
T Consensus        81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l---------------------------------~~~~  127 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL---------------------------------RELA  127 (157)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH---------------------------------HHHH
Confidence            9999999999999999999999999999999998877775532                                 2222


Q ss_pred             cccceeeeeeeehheecc-cceEEEeeccc
Q psy12535        128 LKEKTVMLITHQIQYLTH-VDHVMLLEKGS  156 (209)
Q Consensus       128 ~~~~TiIvitH~l~~l~~-~DrV~~L~~G~  156 (209)
                      ..++|+|++||+++.+.. +|++++|++|+
T Consensus       128 ~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         128 EEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             HCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            236899999999999887 59999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.72  E-value=3.5e-18  Score=162.55  Aligned_cols=93  Identities=27%  Similarity=0.379  Sum_probs=77.1

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||||||+||||++.+|+||||||||++||+.+...+.+.+                              
T Consensus       439 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l------------------------------  488 (556)
T PRK11819        439 QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL------------------------------  488 (556)
T ss_pred             hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH------------------------------
Confidence            45667899999999999999999999999999999999999888876632                              


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEeec-ccee-ecchhhHHhhc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEK-GSVE-AFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~-G~i~-~~G~~~~l~~~  169 (209)
                         ...  . .|||+|||+++.+.. ||+|++|++ |++. ..|+++++.+.
T Consensus       489 ---~~~--~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~  534 (556)
T PRK11819        489 ---LEF--P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED  534 (556)
T ss_pred             ---HhC--C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence               221  2 389999999998865 899999986 7876 57888776544

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.71  E-value=2.6e-18  Score=143.01  Aligned_cols=79  Identities=28%  Similarity=0.345  Sum_probs=65.5

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .......+|||||+||++||||++.+|++|||||||++||+.+...+.+.                              
T Consensus       120 ~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~------------------------------  169 (200)
T PRK13540        120 LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITK------------------------------  169 (200)
T ss_pred             hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH------------------------------
Confidence            34556678999999999999999999999999999999999988877663                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecccceEEE
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVML  151 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~  151 (209)
                         +++....+.|||++||+...+..+|.-++
T Consensus       170 ---l~~~~~~~~tiii~sh~~~~~~~~d~~~~  198 (200)
T PRK13540        170 ---IQEHRAKGGAVLLTSHQDLPLNKADYEEY  198 (200)
T ss_pred             ---HHHHHHcCCEEEEEeCCchhccccchhhc
Confidence               22323357899999999999988876543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.71  E-value=3.4e-18  Score=160.68  Aligned_cols=89  Identities=26%  Similarity=0.360  Sum_probs=78.7

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ......+||.||||.|+||||+..+++|+|||||||+|+......+|+                                
T Consensus       139 ~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~--------------------------------  186 (500)
T COG1129         139 PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD--------------------------------  186 (500)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH--------------------------------
Confidence            345567899999999999999999999999999999999988888877                                


Q ss_pred             hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecch
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~  162 (209)
                       +++++..+|.+||+|||+++.+. .||||.||++|+++..++
T Consensus       187 -~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         187 -LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             -HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence             45555668999999999999875 589999999999988777

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.71  E-value=3.6e-18  Score=141.56  Aligned_cols=81  Identities=20%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +...+...+.+||||||||++||||++.+|+++||||||++||+.+...+.+.                           
T Consensus       113 l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~---------------------------  165 (195)
T PRK13541        113 LHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNL---------------------------  165 (195)
T ss_pred             CHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence            34445667789999999999999999999999999999999999987777553                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEE
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVM  150 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~  150 (209)
                            ++....++.|+|++||+++.+..+|-|.
T Consensus       166 ------l~~~~~~~~tiii~sh~~~~i~~~~~~~  193 (195)
T PRK13541        166 ------IVMKANSGGIVLLSSHLESSIKSAQILQ  193 (195)
T ss_pred             ------HHHHHhCCCEEEEEeCCccccchhheec
Confidence                  2222235789999999999998887653

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.71  E-value=5.6e-18  Score=142.69  Aligned_cols=88  Identities=15%  Similarity=0.181  Sum_probs=73.3

Q ss_pred             CceeecccceecCCccchhhhhHHHHhh----------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccch
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYK----------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG  106 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~----------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (209)
                      +++.+...+.+||+||+||++||||++.          +|+++||||||++||+.....+.+.                 
T Consensus       113 l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~-----------------  175 (213)
T cd03279         113 FDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATA-----------------  175 (213)
T ss_pred             hHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHH-----------------
Confidence            6677788889999999999999999985          5689999999999999887777552                 


Q ss_pred             hhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535        107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV  157 (209)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i  157 (209)
                                      +.+...+++|+|+|||+++.+.. +|++++|++|-+
T Consensus       176 ----------------l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         176 ----------------LELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             ----------------HHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence                            22323347899999999998876 699999998854

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.71  E-value=4.6e-18  Score=176.89  Aligned_cols=94  Identities=27%  Similarity=0.435  Sum_probs=78.5

Q ss_pred             ceeecccc-eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         38 RTLVGDKG-VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        38 ~t~vg~~g-~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ++.+|..+ ..|||||||||+||++|+.+|+||+|||||||||+.++..+++.                           
T Consensus      1009 ~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~--------------------------- 1061 (1470)
T PLN03140       1009 DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--------------------------- 1061 (1470)
T ss_pred             CCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH---------------------------
Confidence            55665443 68999999999999999999999999999999999988888763                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehhe--ecccceEEEeec-cceeecchhh
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQY--LTHVDHVMLLEK-GSVEAFGTTT  164 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~--l~~~DrV~~L~~-G~i~~~G~~~  164 (209)
                            +++...+|+|||+++|+++.  ...+|++++|++ |++++.|+..
T Consensus      1062 ------L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1062 ------VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred             ------HHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence                  33334458999999999984  456899999996 8999999863

>PLN03073 ABC transporter F family; Provisional

Probab=99.70  E-value=8e-18  Score=164.95  Aligned_cols=90  Identities=28%  Similarity=0.397  Sum_probs=76.1

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      .....+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                                
T Consensus       339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~--------------------------------  386 (718)
T PLN03073        339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETY--------------------------------  386 (718)
T ss_pred             hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH--------------------------------
Confidence            445679999999999999999999999999999999999887776552                                


Q ss_pred             hhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL  167 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~  167 (209)
                       ++.   -+.|||+|||+++.+.. ||+|++|++|++. ..|+++++.
T Consensus       387 -L~~---~~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~  430 (718)
T PLN03073        387 -LLK---WPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFE  430 (718)
T ss_pred             -HHH---cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence             222   16799999999999876 8999999999996 577776554

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.70  E-value=8.8e-18  Score=162.25  Aligned_cols=91  Identities=27%  Similarity=0.436  Sum_probs=75.6

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      +...+..|||||||||+|||||+.+|+||||||||++||+.+...+.+.                               
T Consensus       434 ~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~-------------------------------  482 (635)
T PRK11147        434 AMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEEL-------------------------------  482 (635)
T ss_pred             HhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH-------------------------------
Confidence            4456679999999999999999999999999999999999887666542                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc-cceEEEee-ccceee-cchhhHHh
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE-KGSVEA-FGTTTQLL  167 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~-~G~i~~-~G~~~~l~  167 (209)
                        ++..   +.|||+|||+.+++.. ||+|++|+ +|+|.. .|++++..
T Consensus       483 --l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~  527 (635)
T PRK11147        483 --LDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR  527 (635)
T ss_pred             --HHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence              2221   4599999999999865 89999998 899865 57887764

>PRK13409 putative ATPase RIL; Provisional

Probab=99.70  E-value=6.4e-18  Score=162.42  Aligned_cols=86  Identities=26%  Similarity=0.392  Sum_probs=72.9

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++........+|||||||||+||+||+.+|+||||||||++||+.....+++.                          
T Consensus       201 ~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~--------------------------  254 (590)
T PRK13409        201 GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARL--------------------------  254 (590)
T ss_pred             CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH--------------------------
Confidence            444556777889999999999999999999999999999999999988777663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeecc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKG  155 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G  155 (209)
                             ++.... ++|||+|||+++.+.. +|+|++|+++
T Consensus       255 -------i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        255 -------IRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             -------HHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence                   333344 8899999999999875 7999999863

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.3e-17  Score=144.33  Aligned_cols=94  Identities=27%  Similarity=0.425  Sum_probs=77.8

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |.....++.-.+||-|||||+-|||||+.+|++||||||++|||......+.+.+.                        
T Consensus       160 g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~------------------------  215 (257)
T COG1119         160 GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLE------------------------  215 (257)
T ss_pred             chhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHH------------------------
Confidence            34445667778999999999999999999999999999999999988777665332                        


Q ss_pred             ccchhhhhhhhcc--ccceeeeeeeehheeccc-ceEEEeeccceeecch
Q psy12535        116 VRGALSLVRTSFL--KEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGT  162 (209)
Q Consensus       116 ~~~~~~~~~~~~~--~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~~~G~  162 (209)
                               ....  .+.|+|+|||..+.+..| ++++.+++|+++..|.
T Consensus       216 ---------~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         216 ---------ELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             ---------HHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence                     2222  367999999999998764 9999999999998773

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.70  E-value=6.7e-18  Score=140.11  Aligned_cols=80  Identities=29%  Similarity=0.338  Sum_probs=61.7

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      .......+.+||||||||++||||++.+|+++||||||++||+.+...+.+.                            
T Consensus       118 ~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~----------------------------  169 (198)
T TIGR01189       118 TGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGL----------------------------  169 (198)
T ss_pred             HHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH----------------------------
Confidence            3334556679999999999999999999999999999999999887777553                            


Q ss_pred             chhhhhhhhccccceeeeeeeehheecccceEEE
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVML  151 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~  151 (209)
                           +.....++.|+|++||+...+.. ++++.
T Consensus       170 -----l~~~~~~~~tii~~sH~~~~~~~-~~~~~  197 (198)
T TIGR01189       170 -----LRAHLARGGIVLLTTHQDLGLVE-ARELR  197 (198)
T ss_pred             -----HHHHHhCCCEEEEEEcccccccc-eEEee
Confidence                 22223357899999998854332 55443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.70  E-value=1e-17  Score=147.17  Aligned_cols=108  Identities=26%  Similarity=0.331  Sum_probs=92.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      +++..+..+...||-|||-|..||.||+++|+||+|||||-|||...+..+.+                           
T Consensus       145 dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~---------------------------  197 (325)
T COG4586         145 DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE---------------------------  197 (325)
T ss_pred             cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH---------------------------
Confidence            45566667778999999999999999999999999999999999988877765                           


Q ss_pred             ccchhhhhhhhc-cccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccCCchhc
Q psy12535        116 VRGALSLVRTSF-LKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL  176 (209)
Q Consensus       116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~  176 (209)
                            +++... ..+.||+++||+++.+. .||||++|++|+++..|+.+++.+.+..+..+
T Consensus       198 ------Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~  254 (325)
T COG4586         198 ------FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF  254 (325)
T ss_pred             ------HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEE
Confidence                  223322 35889999999999886 59999999999999999999999887765544

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.68  E-value=1.7e-17  Score=165.97  Aligned_cols=98  Identities=29%  Similarity=0.460  Sum_probs=83.7

Q ss_pred             CCce-eecccceecCCccchhhhhHHHHhh---hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535         36 GDRT-LVGDKGVSLSGGQRARISLARAVYK---RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG  111 (209)
Q Consensus        36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~---~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (209)
                      |+.. .+++...+|||||+|||+||++|+.   +|++|||||||++||+.....+.+.                      
T Consensus       816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~----------------------  873 (924)
T TIGR00630       816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEV----------------------  873 (924)
T ss_pred             CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHH----------------------
Confidence            4443 3578889999999999999999997   5999999999999999988888663                      


Q ss_pred             ccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHH
Q psy12535        112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQL  166 (209)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l  166 (209)
                                 +.....+|+|||+|||+++.+..+|+|++|      ++|+|++.|+++++
T Consensus       874 -----------L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       874 -----------LQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             -----------HHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence                       223334588999999999998889999999      79999999998875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.68  E-value=1.8e-17  Score=138.47  Aligned_cols=107  Identities=29%  Similarity=0.494  Sum_probs=88.7

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +.++..+..+||||+||+.|||-|+..|+++++||||.|||...+..+.+.+. .                         
T Consensus       143 ~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllr-g-------------------------  196 (258)
T COG4107         143 DRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR-G-------------------------  196 (258)
T ss_pred             ccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHH-H-------------------------
Confidence            45667778999999999999999999999999999999999988877766321 1                         


Q ss_pred             hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhcc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQLL  177 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~~  177 (209)
                         +..+   -+-++|+||||+..++. ++|.++|++|++++.|-.+.++.... .|++++
T Consensus       197 ---Lv~~---l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQLL  251 (258)
T COG4107         197 ---LVRE---LGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL  251 (258)
T ss_pred             ---HHHh---cCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCCCchHHHH
Confidence               1111   26799999999999886 79999999999999999998886543 566664

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.68  E-value=2.3e-17  Score=172.65  Aligned_cols=100  Identities=29%  Similarity=0.413  Sum_probs=86.4

Q ss_pred             CCcee-ecccceecCCccchhhhhHHHHh---hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535         36 GDRTL-VGDKGVSLSGGQRARISLARAVY---KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG  111 (209)
Q Consensus        36 g~~t~-vg~~g~~LSgGqrQRlaiARal~---~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (209)
                      |+... +++...+|||||+|||+|||||+   .+|++|||||||++||+.....+++.                      
T Consensus       797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~l----------------------  854 (1809)
T PRK00635        797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYV----------------------  854 (1809)
T ss_pred             CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHH----------------------
Confidence            56555 68888999999999999999998   59999999999999999988887663                      


Q ss_pred             ccccccchhhhhhhhccccceeeeeeeehheecccceEEEee------ccceeecchhhHHhh
Q psy12535        112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE------KGSVEAFGTTTQLLA  168 (209)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~------~G~i~~~G~~~~l~~  168 (209)
                                 +.....+|+|||+|||+++.+..+|+|++|.      +|++++.|+++++..
T Consensus       855 -----------L~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        855 -----------LQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             -----------HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence                       3333345889999999999987789999996      789999999999875

>PLN03140 ABC transporter G family member; Provisional

Probab=99.68  E-value=2.8e-17  Score=171.12  Aligned_cols=101  Identities=21%  Similarity=0.327  Sum_probs=84.1

Q ss_pred             CCCceeecc-cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccc
Q psy12535         35 SGDRTLVGD-KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSA  113 (209)
Q Consensus        35 ~g~~t~vg~-~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (209)
                      .-.+|.+|. ....|||||||||+||++|+.+|++++|||||+|||+.+...+.+.+                       
T Consensus       323 ~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~L-----------------------  379 (1470)
T PLN03140        323 ICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL-----------------------  379 (1470)
T ss_pred             cccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHH-----------------------
Confidence            344677764 45789999999999999999999999999999999999988887632                       


Q ss_pred             ccccchhhhhhhhcc-ccceeeeeeeehh-e-ecccceEEEeeccceeecchhhHHhh
Q psy12535        114 LGVRGALSLVRTSFL-KEKTVMLITHQIQ-Y-LTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       114 ~~~~~~~~~~~~~~~-~~~TiIvitH~l~-~-l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                                +.... .++|+|+++|++. . ...+|+|++|++|++++.|+.+++..
T Consensus       380 ----------r~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~  427 (1470)
T PLN03140        380 ----------QQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILE  427 (1470)
T ss_pred             ----------HHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHH
Confidence                      23222 4789999999863 3 45689999999999999999988864

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.67  E-value=3e-17  Score=171.72  Aligned_cols=100  Identities=25%  Similarity=0.360  Sum_probs=84.5

Q ss_pred             CCcee-ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535         36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS  112 (209)
Q Consensus        36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (209)
                      |++.+ +++...+|||||+|||+|||||+.+|  ++|||||||++||+.....+++.                       
T Consensus       464 GL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~l-----------------------  520 (1809)
T PRK00635        464 GLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINV-----------------------  520 (1809)
T ss_pred             cccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHH-----------------------
Confidence            44443 46777899999999999999999999  89999999999999988887663                       


Q ss_pred             cccccchhhhhhhhccccceeeeeeeehheecccceEEEee------ccceeecchhhHHhh
Q psy12535        113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE------KGSVEAFGTTTQLLA  168 (209)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~------~G~i~~~G~~~~l~~  168 (209)
                                ++++..+|.|||+|+|+++.+..||+|++|.      +|+|++.|+++++..
T Consensus       521 ----------L~~L~~~G~TVIvVeHd~~vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~  572 (1809)
T PRK00635        521 ----------IKKLRDQGNTVLLVEHDEQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLA  572 (1809)
T ss_pred             ----------HHHHHhCCCEEEEEeCcHHHHHhCCEEEEEcCCcccCCCEEEEecCHHHHhh
Confidence                      3333445899999999999777799999996      789999999998854

>KOG0061|consensus

Probab=99.67  E-value=3.8e-17  Score=157.70  Aligned_cols=99  Identities=29%  Similarity=0.475  Sum_probs=84.8

Q ss_pred             Cceeecc-cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         37 DRTLVGD-KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        37 ~~t~vg~-~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      -+|.+|. ....+|||||+||+||.-++.+|.||+|||||||||..++.++.+                           
T Consensus       159 ~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~---------------------------  211 (613)
T KOG0061|consen  159 ADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ---------------------------  211 (613)
T ss_pred             ccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH---------------------------
Confidence            3577763 336899999999999999999999999999999999998888866                           


Q ss_pred             ccchhhhhhhhccccceeeeeeeehhe--ecccceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQY--LTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~--l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                            .+++..++|+|||++-|+++.  ...+|++++|.+|+++..|+++++..
T Consensus       212 ------~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~  260 (613)
T KOG0061|consen  212 ------LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE  260 (613)
T ss_pred             ------HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence                  444556679999999999975  46689999999999999999987754

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.66  E-value=5.6e-17  Score=154.20  Aligned_cols=91  Identities=30%  Similarity=0.511  Sum_probs=75.2

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ....++||||||.||+||+||..+||||||||||++||..+...+-+ .+                              
T Consensus       148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~-~L------------------------------  196 (530)
T COG0488         148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED-YL------------------------------  196 (530)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH-HH------------------------------
Confidence            55668999999999999999999999999999999999976555433 11                              


Q ss_pred             hhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhh
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLA  168 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~  168 (209)
                        ..  .+| |+|+||||-.++.. |++|+.++.|++. +.|+++...+
T Consensus       197 --~~--~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~  240 (530)
T COG0488         197 --KR--YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLE  240 (530)
T ss_pred             --Hh--CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHH
Confidence              11  246 99999999999986 7999999999885 5678877654

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.66  E-value=5.9e-17  Score=138.54  Aligned_cols=102  Identities=25%  Similarity=0.354  Sum_probs=87.2

Q ss_pred             hhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchh
Q psy12535         28 EDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR  107 (209)
Q Consensus        28 ~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (209)
                      +.+..++.|++..++.+..-|||||||-|+++.|.++.|+||+|||=|++|||.+...+++.--                
T Consensus       129 ~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~----------------  192 (263)
T COG1101         129 ERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTA----------------  192 (263)
T ss_pred             HHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHH----------------
Confidence            4577889999999999999999999999999999999999999999999999999999887321                


Q ss_pred             hhhcccccccchhhhhhhhccccceeeeeeeehhee-cccceEEEeeccceeecc
Q psy12535        108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G  161 (209)
                                   +++.   ..+-|.+||||+++.. .+.+|.++|++|+|+.+-
T Consensus       193 -------------kiV~---~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv  231 (263)
T COG1101         193 -------------KIVE---EHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV  231 (263)
T ss_pred             -------------HHHH---hcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence                         1221   2356999999999875 456999999999998653

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.1e-16  Score=150.63  Aligned_cols=89  Identities=21%  Similarity=0.408  Sum_probs=77.7

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      ....+||||.||||.|||.|+.+|+||||||||.|+|.-++..++.                                 +
T Consensus       397 ~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~---------------------------------l  443 (500)
T COG1129         397 QPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR---------------------------------L  443 (500)
T ss_pred             chhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHH---------------------------------H
Confidence            4557899999999999999999999999999999999998888877                                 4


Q ss_pred             hhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhh
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTT  164 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~  164 (209)
                      ++++..+|++||+||.++.++- .||||+||++|+++.+=+.+
T Consensus       444 i~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~  486 (500)
T COG1129         444 IRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE  486 (500)
T ss_pred             HHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence            5555678999999999998865 69999999999998754443

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.64  E-value=1.1e-16  Score=134.13  Aligned_cols=80  Identities=21%  Similarity=0.214  Sum_probs=66.2

Q ss_pred             ecccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ....+.+||||||||++|||+++    .+|+++||||||++||+.....+.+.                           
T Consensus       107 ~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~---------------------------  159 (197)
T cd03278         107 KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARL---------------------------  159 (197)
T ss_pred             cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence            34567899999999999999997    46799999999999999988777663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                            +++.. ++.|||+|||+++.+..+|+++.|..
T Consensus       160 ------l~~~~-~~~tiIiitH~~~~~~~~d~v~~~~~  190 (197)
T cd03278         160 ------LKEFS-KETQFIVITHRKGTMEAADRLYGVTM  190 (197)
T ss_pred             ------HHHhc-cCCEEEEEECCHHHHhhcceEEEEEe
Confidence                  22222 36799999999998888999999864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.64  E-value=1.4e-16  Score=132.10  Aligned_cols=89  Identities=28%  Similarity=0.379  Sum_probs=76.1

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      ++.+..+..+||||+|||++|+|-|..-|+|||||||||+||+.+++.+-+.+..-                        
T Consensus       124 ~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~------------------------  179 (223)
T COG4619         124 DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY------------------------  179 (223)
T ss_pred             hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH------------------------
Confidence            56777888999999999999999999999999999999999999998886644321                        


Q ss_pred             chhhhhhhhccccceeeeeeeehhe-ecccceEEEeecccee
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVE  158 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~  158 (209)
                           +   ..++..++.|||+.+. ++.+|+++.+..|++-
T Consensus       180 -----v---~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~  213 (223)
T COG4619         180 -----V---REQNVAVLWITHDKDQAIRHADKVITLQPGHAG  213 (223)
T ss_pred             -----h---hhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence                 1   1357799999999987 7889999999998763

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.63  E-value=1.8e-16  Score=134.87  Aligned_cols=79  Identities=22%  Similarity=0.215  Sum_probs=65.4

Q ss_pred             ecccceecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      .++++..||||||||++||||++.    +|+++||||||++||+.+...+++.+                          
T Consensus       152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l--------------------------  205 (243)
T cd03272         152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI--------------------------  205 (243)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH--------------------------
Confidence            356788999999999999999974    58999999999999999888776632                          


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE  153 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~  153 (209)
                             +... +++|+|++||+.+....||++++|.
T Consensus       206 -------~~~~-~~~~ii~~~h~~~~~~~~d~i~~l~  234 (243)
T cd03272         206 -------KELS-DGAQFITTTFRPELLEVADKFYGVK  234 (243)
T ss_pred             -------HHHh-CCCEEEEEecCHHHHhhCCEEEEEE
Confidence                   2222 3678899999888777799999995

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.63  E-value=2.7e-16  Score=132.28  Aligned_cols=82  Identities=23%  Similarity=0.321  Sum_probs=67.9

Q ss_pred             eecccceecCCccchh------hhhHHHHhhhcceeeccCcchhhhhhhhh-hhhhhhhhccccCCCCccccchhhhhcc
Q psy12535         40 LVGDKGVSLSGGQRAR------ISLARAVYKRADVYLLDDPLSAVDAHVGK-HLFEDCITGLHTGVPRFDSRWGRSFFGS  112 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQR------laiARal~~~p~illLDEPts~LD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (209)
                      .+.+.+..||+||+||      ++||||++.+|+++||||||++||+.... .+.+.                       
T Consensus       108 ~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~-----------------------  164 (204)
T cd03240         108 PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEI-----------------------  164 (204)
T ss_pred             HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHH-----------------------
Confidence            4466778999999996      78999999999999999999999998777 66553                       


Q ss_pred             cccccchhhhhhhhccc-cceeeeeeeehheecccceEEEeec
Q psy12535        113 ALGVRGALSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       113 ~~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                                +.....+ +.|||++||+++.+..+|+|++|++
T Consensus       165 ----------l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~  197 (204)
T cd03240         165 ----------IEERKSQKNFQLIVITHDEELVDAADHIYRVEK  197 (204)
T ss_pred             ----------HHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence                      2222233 7899999999998888999999964

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.62  E-value=2.8e-16  Score=146.49  Aligned_cols=94  Identities=28%  Similarity=0.461  Sum_probs=79.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++-...++..+||-|+||||.|-+||+++|++||||||||-|-|.....+|+                           
T Consensus       129 Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~---------------------------  181 (501)
T COG3845         129 GLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE---------------------------  181 (501)
T ss_pred             CCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH---------------------------
Confidence            44444556778999999999999999999999999999999999988888877                           


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecch
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~  162 (209)
                            .++.+...|+|||+|||.+..+. .||||.||+.|+++..-+
T Consensus       182 ------~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         182 ------ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             ------HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence                  34445668999999999999876 589999999999865443

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.62  E-value=2e-16  Score=136.20  Aligned_cols=77  Identities=18%  Similarity=0.228  Sum_probs=65.0

Q ss_pred             ceecCCccchhhhhHHHHhhh----cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         45 GVSLSGGQRARISLARAVYKR----ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~----p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      +..||+|||||++||||++.+    |+++||||||++||+.....+.+.                               
T Consensus       153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~-------------------------------  201 (247)
T cd03275         153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASY-------------------------------  201 (247)
T ss_pred             HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHH-------------------------------
Confidence            478999999999999999875    899999999999999887777652                               


Q ss_pred             hhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                        +.....++.|+|+|||+.+.+..+|++++|..
T Consensus       202 --i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~  233 (247)
T cd03275         202 --IREQAGPNFQFIVISLKEEFFSKADALVGVYR  233 (247)
T ss_pred             --HHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence              23333347899999999988888999999863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.62  E-value=2.8e-16  Score=131.69  Aligned_cols=83  Identities=16%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             ecccceecCCccchhhhhHHHH----hhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAV----YKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal----~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ....+.+||+|||||++||+|+    +.+|+++||||||++||+.....+.+.+.                         
T Consensus       103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~-------------------------  157 (198)
T cd03276         103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLV-------------------------  157 (198)
T ss_pred             cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHH-------------------------
Confidence            4567789999999999999999    58999999999999999988877766322                         


Q ss_pred             cchhhhhhhhcc---ccceeeeeeeehheecccceEEEeeccc
Q psy12535        117 RGALSLVRTSFL---KEKTVMLITHQIQYLTHVDHVMLLEKGS  156 (209)
Q Consensus       117 ~~~~~~~~~~~~---~~~TiIvitH~l~~l~~~DrV~~L~~G~  156 (209)
                              +...   .+.|||++||+++.+..+|+|.+|+.++
T Consensus       158 --------~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~  192 (198)
T cd03276         158 --------KEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD  192 (198)
T ss_pred             --------HHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence                    2111   2368999999999998889999998754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.61  E-value=3.4e-16  Score=129.36  Aligned_cols=87  Identities=18%  Similarity=0.260  Sum_probs=73.3

Q ss_pred             hhccCCCCCceeecccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCcccc
Q psy12535         29 DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR  104 (209)
Q Consensus        29 ~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~  104 (209)
                      .+..+|+|..|.+      ||+||+||++|||+++    .+|+++|+|||+++||+.....+++.+              
T Consensus        82 ~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L--------------  141 (178)
T cd03239          82 SYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMI--------------  141 (178)
T ss_pred             ceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHH--------------
Confidence            4667899888887      9999999999999996    689999999999999999887776632              


Q ss_pred             chhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                                         ......+.|+|++||+.+.+..+|+++.+.+
T Consensus       142 -------------------~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~  172 (178)
T cd03239         142 -------------------KEMAKHTSQFIVITLKKEMFENADKLIGVLF  172 (178)
T ss_pred             -------------------HHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence                               2222346899999999998888999999975

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.59  E-value=5e-16  Score=131.37  Aligned_cols=100  Identities=19%  Similarity=0.348  Sum_probs=81.1

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      .........||.||||++.|+..++.+|++|+||||++|+-.....+.-+                              
T Consensus       139 ~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~tae------------------------------  188 (249)
T COG4674         139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE------------------------------  188 (249)
T ss_pred             hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHH------------------------------
Confidence            33445566899999999999999999999999999999996543333322                              


Q ss_pred             hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCC
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLD  172 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~  172 (209)
                         +++. ....++|++|.|||.+++. +++|.+|+.|.|.++|+.+++.++..-
T Consensus       189 ---Ll~~-la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~V  239 (249)
T COG4674         189 ---LLKS-LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPKV  239 (249)
T ss_pred             ---HHHH-HhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcce
Confidence               2222 2356899999999999986 799999999999999999999876543

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.59  E-value=7.3e-16  Score=132.69  Aligned_cols=79  Identities=20%  Similarity=0.310  Sum_probs=66.5

Q ss_pred             ecccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ....+.+||+|||||++|||||+    .+|+++||||||++||+.....+++.                           
T Consensus       160 ~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~---------------------------  212 (251)
T cd03273         160 WKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRM---------------------------  212 (251)
T ss_pred             hcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHH---------------------------
Confidence            45677899999999999999998    57899999999999999988877663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE  153 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~  153 (209)
                            +++. .++.|+|+|||+.+.+..+|+|+-+.
T Consensus       213 ------l~~~-~~g~~ii~iSH~~~~~~~~d~v~~~~  242 (251)
T cd03273         213 ------IKTH-FKGSQFIVVSLKEGMFNNANVLFRTR  242 (251)
T ss_pred             ------HHHH-cCCCEEEEEECCHHHHHhCCEEEEEE
Confidence                  2232 24789999999988888899998875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0059|consensus

Probab=99.58  E-value=9.4e-16  Score=153.38  Aligned_cols=99  Identities=21%  Similarity=0.355  Sum_probs=85.9

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ......+|||+|+|+++|.|++.+|++++|||||+|+||..++++++.                                
T Consensus       693 ~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~i--------------------------------  740 (885)
T KOG0059|consen  693 NKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDI--------------------------------  740 (885)
T ss_pred             ccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH--------------------------------
Confidence            344678999999999999999999999999999999999998888773                                


Q ss_pred             hhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCCc
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLDF  173 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~~  173 (209)
                       +.+..+.++.||++||.+++.+. |||+.+|.+|++...|+++++++..+..
T Consensus       741 -i~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~g  792 (885)
T KOG0059|consen  741 -IARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSG  792 (885)
T ss_pred             -HHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCc
Confidence             33333446699999999999985 8999999999999999999999876543

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.57  E-value=2.4e-15  Score=126.59  Aligned_cols=95  Identities=27%  Similarity=0.446  Sum_probs=81.3

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      .+..||-||||||++||||+-+|+|+|.||+.++||...+.++....+.                             + 
T Consensus       146 ~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~Le-----------------------------L-  195 (267)
T COG4167         146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE-----------------------------L-  195 (267)
T ss_pred             chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHH-----------------------------H-
Confidence            4568999999999999999999999999999999999877777553221                             1 


Q ss_pred             hhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        124 RTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       124 ~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                        +.+-|.+-|+|+.++..+.+ +|.|+||++|++++.|++.+++...
T Consensus       196 --Qek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P  241 (267)
T COG4167         196 --QEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP  241 (267)
T ss_pred             --HHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence              12247899999999999997 6999999999999999999998764

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.56  E-value=2.8e-15  Score=126.93  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=63.3

Q ss_pred             cceecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         44 KGVSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      ....||+|||||++||||++.    +|++++|||||++||+.+...+.+.+                             
T Consensus       124 ~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l-----------------------------  174 (212)
T cd03274         124 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYI-----------------------------  174 (212)
T ss_pred             chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHH-----------------------------
Confidence            346899999999999999974    47999999999999998887776532                             


Q ss_pred             hhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                          +.. .++.|+|++||+.+....||+|++|..
T Consensus       175 ----~~~-~~~~~~iivs~~~~~~~~~d~v~~~~~  204 (212)
T cd03274         175 ----KER-TKNAQFIVISLRNNMFELADRLVGIYK  204 (212)
T ss_pred             ----HHH-cCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence                222 246799999999877778999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.53  E-value=1.6e-15  Score=131.09  Aligned_cols=95  Identities=24%  Similarity=0.385  Sum_probs=80.4

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      .+..++|.||+-||++|-|...+|+|||+||..+..|+.=++.-                                 +..
T Consensus       143 ~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~---------------------------------~~r  189 (249)
T COG1134         143 QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC---------------------------------LER  189 (249)
T ss_pred             CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH---------------------------------HHH
Confidence            34569999999999999999999999999999999999533332                                 234


Q ss_pred             hhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      +.+...+++|||+|||+++.++. ||++++|++|+|...|+++++....
T Consensus       190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y  238 (249)
T COG1134         190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAY  238 (249)
T ss_pred             HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHH
Confidence            44544578999999999999975 8999999999999999999998643

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.52  E-value=1.1e-14  Score=123.48  Aligned_cols=93  Identities=16%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             hccCCCCCceeecccceecCCccchhhhhHHHH----hhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccc
Q psy12535         30 FAQLPSGDRTLVGDKGVSLSGGQRARISLARAV----YKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW  105 (209)
Q Consensus        30 i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal----~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (209)
                      +..++.+.+. -...+..||+||||++.+|+++    +.+|+++|+||||++||+.....+++.+.              
T Consensus       110 l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~--------------  174 (213)
T cd03277         110 LVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLV--------------  174 (213)
T ss_pred             heeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHH--------------
Confidence            3444544432 2456779999999998877654    47999999999999999998888876432              


Q ss_pred             hhhhhcccccccchhhhhhhhccc-c-ceeeeeeeehhee-cccc--eEEEeeccc
Q psy12535        106 GRSFFGSALGVRGALSLVRTSFLK-E-KTVMLITHQIQYL-THVD--HVMLLEKGS  156 (209)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~TiIvitH~l~~l-~~~D--rV~~L~~G~  156 (209)
                                         ....+ + .|+|++||++... ..+|  +|++|.+|+
T Consensus       175 -------------------~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         175 -------------------ETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             -------------------HHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence                               22233 4 4799999988654 4454  888999886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.52  E-value=8.8e-15  Score=139.25  Aligned_cols=91  Identities=31%  Similarity=0.476  Sum_probs=76.0

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ..+...||||||-|+.||+.++.+|.||||||||+.||..+...+-+.+.                              
T Consensus       434 ~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~------------------------------  483 (530)
T COG0488         434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL------------------------------  483 (530)
T ss_pred             hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH------------------------------
Confidence            35567899999999999999999999999999999999988777755331                              


Q ss_pred             hhhhhccccceeeeeeeehheecc-cceEEEeeccceeec-chhhHHhhc
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAF-GTTTQLLAS  169 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~-G~~~~l~~~  169 (209)
                         .   -.-|||+||||..++.. +++|+.+++ ++... |++++....
T Consensus       484 ---~---f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~  526 (530)
T COG0488         484 ---D---FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ  526 (530)
T ss_pred             ---h---CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence               1   14599999999999986 799999998 66655 888877654

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.52  E-value=6.5e-15  Score=139.20  Aligned_cols=91  Identities=27%  Similarity=0.397  Sum_probs=73.0

Q ss_pred             cCCCCCceeecccc------eecCCccchhhhhHHHHh----------hhcceeeccCcc-hhhhhhhhhhhhhhhhhcc
Q psy12535         32 QLPSGDRTLVGDKG------VSLSGGQRARISLARAVY----------KRADVYLLDDPL-SAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        32 ~lp~g~~t~vg~~g------~~LSgGqrQRlaiARal~----------~~p~illLDEPt-s~LD~~~~~~~~~~~~~~~   94 (209)
                      .+|.++++.+++.|      .+|||||+||++||+||+          .+|++||||||| ++||+.....+++.     
T Consensus       447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~-----  521 (562)
T PHA02562        447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSI-----  521 (562)
T ss_pred             EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHH-----
Confidence            34566666666555      689999999999999987          589999999998 78999887777652     


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeec-cce
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK-GSV  157 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~-G~i  157 (209)
                                                  +...  ++.|||+|||+......+|++++|.+ |+.
T Consensus       522 ----------------------------l~~~--~~~~iiiish~~~~~~~~d~~~~l~~~~~~  555 (562)
T PHA02562        522 ----------------------------LDSL--KDTNVFVISHKDHDPQKFDRHLKMEKVGRF  555 (562)
T ss_pred             ----------------------------HHhC--CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence                                        2222  47899999999887778999999986 554

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=2.6e-14  Score=122.99  Aligned_cols=88  Identities=25%  Similarity=0.386  Sum_probs=75.6

Q ss_pred             ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535         47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS  126 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (209)
                      .+|||+|+|..|+.+++.+|++.|||||-||||..+-+.+.+.                                 +...
T Consensus       144 GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~---------------------------------i~~l  190 (251)
T COG0396         144 GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG---------------------------------INAL  190 (251)
T ss_pred             CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHH---------------------------------HHHH
Confidence            7999999999999999999999999999999999766655442                                 2333


Q ss_pred             ccccceeeeeeeehheeccc--ceEEEeeccceeecchhhHHhh
Q psy12535        127 FLKEKTVMLITHQIQYLTHV--DHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       127 ~~~~~TiIvitH~l~~l~~~--DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                      ..++.++++|||.-..+.+.  |+|.+|-+|+|+..|.+ ++..
T Consensus       191 r~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~  233 (251)
T COG0396         191 REEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAE  233 (251)
T ss_pred             hcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence            45689999999999888875  99999999999999999 5543

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.47  E-value=5.1e-14  Score=137.69  Aligned_cols=101  Identities=29%  Similarity=0.508  Sum_probs=86.8

Q ss_pred             ecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      +|.....|||||.|||-||.-|.++.   -++||||||.||-....+++++                             
T Consensus       816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-----------------------------  866 (935)
T COG0178         816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-----------------------------  866 (935)
T ss_pred             cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-----------------------------
Confidence            58999999999999999999999988   8999999999998876666655                             


Q ss_pred             chhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCch
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDFT  174 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~~  174 (209)
                          .+.++...|.|||+|.|+++.++.||+|+=|      ..|+|+++|+|+++.+....|+
T Consensus       867 ----VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~T  925 (935)
T COG0178         867 ----VLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYT  925 (935)
T ss_pred             ----HHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchh
Confidence                2333345799999999999999999999988      5789999999999987554443

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.47  E-value=2.6e-14  Score=117.11  Aligned_cols=90  Identities=28%  Similarity=0.435  Sum_probs=69.5

Q ss_pred             eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535         20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP   99 (209)
Q Consensus        20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~   99 (209)
                      +++..++..++.+.|           .+||||||.||++-|+|+..|+.++||||+|.||...+.+..+.++.++     
T Consensus       118 AL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~-----  181 (213)
T COG4136         118 ALERSGLDGAFHQDP-----------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV-----  181 (213)
T ss_pred             HHHHhccchhhhcCh-----------hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH-----
Confidence            344445555555555           4999999999999999999999999999999999987777666443321     


Q ss_pred             CccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535        100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL  152 (209)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L  152 (209)
                                                 ...|..+|+||||.+.+....||+-|
T Consensus       182 ---------------------------r~agiPtv~VTHD~~DvpagsrVie~  207 (213)
T COG4136         182 ---------------------------RAAGIPTVQVTHDLQDVPAGSRVIEM  207 (213)
T ss_pred             ---------------------------HhcCCCeEEEecccccCCCCCeeeee
Confidence                                       22477899999999998865677655

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.47  E-value=3.4e-14  Score=124.36  Aligned_cols=78  Identities=22%  Similarity=0.258  Sum_probs=64.5

Q ss_pred             eecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         46 VSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ..|||||+||++||++++.    +|+++|||||+++||+.....+.+.+                               
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l-------------------------------  217 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL-------------------------------  217 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH-------------------------------
Confidence            3599999999999997654    99999999999999999888776632                               


Q ss_pred             hhhhhccccceeeeeeeehheecccceEEEeeccce
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV  157 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i  157 (209)
                        ... .++.|+|+|||++.....+|++++|.+|..
T Consensus       218 --~~~-~~~~tii~isH~~~~~~~~d~~~~l~~~~~  250 (276)
T cd03241         218 --KEL-SRSHQVLCITHLPQVAAMADNHFLVEKEVE  250 (276)
T ss_pred             --HHH-hCCCEEEEEechHHHHHhcCcEEEEEEecC
Confidence              222 236799999999997777899999988743

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0062|consensus

Probab=99.46  E-value=2e-14  Score=134.83  Aligned_cols=105  Identities=23%  Similarity=0.378  Sum_probs=80.7

Q ss_pred             CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535         13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT   92 (209)
Q Consensus        13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~   92 (209)
                      +++.+++.+...|+...+...+          ..+||||||-||++|.+...+|.+|||||||+.||..+-..+-..+  
T Consensus       458 ~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al--  525 (582)
T KOG0062|consen  458 TEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKAL--  525 (582)
T ss_pred             CHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHH--
Confidence            4555555555555555444332          3589999999999999999999999999999999998766654422  


Q ss_pred             ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceee-cchh
Q psy12535         93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEA-FGTT  163 (209)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~-~G~~  163 (209)
                                                        ..-+-.||+|||+.+++.. |+.+++.++|+|.. +|+.
T Consensus       526 ----------------------------------~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~  564 (582)
T KOG0062|consen  526 ----------------------------------KNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI  564 (582)
T ss_pred             ----------------------------------HhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence                                              1235589999999999986 89999999999975 3444

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.43  E-value=7.8e-14  Score=112.95  Aligned_cols=75  Identities=27%  Similarity=0.405  Sum_probs=63.5

Q ss_pred             ecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         47 SLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      +||+||+||++||++|..    +|+++|||||++++|+.....+.+.+.                               
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~-------------------------------  125 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAIL-------------------------------  125 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHH-------------------------------
Confidence            599999999999999997    789999999999999988777766332                               


Q ss_pred             hhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                        +...++.++|++||+.+....+|+++.|..
T Consensus       126 --~~~~~~~~vii~TH~~~~~~~~d~~~~l~~  155 (162)
T cd03227         126 --EHLVKGAQVIVITHLPELAELADKLIHIKK  155 (162)
T ss_pred             --HHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence              212236799999999999888999999964

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG0927|consensus

Probab=99.43  E-value=7.5e-14  Score=131.69  Aligned_cols=93  Identities=26%  Similarity=0.443  Sum_probs=76.0

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ......+||||++.|++|||+|..+|++|||||||++||..+..-+-+ .                              
T Consensus       215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee-~------------------------------  263 (614)
T KOG0927|consen  215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE-Y------------------------------  263 (614)
T ss_pred             HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-H------------------------------
Confidence            345567999999999999999999999999999999999976544433 1                              


Q ss_pred             hhhhhhccccc-eeeeeeeehheecc-cceEEEeeccc-eeecchhhHHhhc
Q psy12535        121 SLVRTSFLKEK-TVMLITHQIQYLTH-VDHVMLLEKGS-VEAFGTTTQLLAS  169 (209)
Q Consensus       121 ~~~~~~~~~~~-TiIvitH~l~~l~~-~DrV~~L~~G~-i~~~G~~~~l~~~  169 (209)
                        +.+   -+. ++|+++|.-+++.. |.+|+.|++++ +.+.|+++++...
T Consensus       264 --L~k---~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~t  310 (614)
T KOG0927|consen  264 --LAK---YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKT  310 (614)
T ss_pred             --HHh---ccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhH
Confidence              111   234 89999999999975 89999999999 6778999888643

>TIGR00634 recN DNA repair protein RecN

Probab=99.41  E-value=1.1e-13  Score=132.33  Aligned_cols=77  Identities=22%  Similarity=0.278  Sum_probs=65.6

Q ss_pred             eecCCccchhhhhHHHHhhh----cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         46 VSLSGGQRARISLARAVYKR----ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~~~----p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ..|||||+||++||++++..    |++||||||++|||+.+...+.+.                                
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~--------------------------------  486 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKK--------------------------------  486 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHH--------------------------------
Confidence            47899999999999999985    699999999999999888777663                                


Q ss_pred             hhhhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS  156 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~  156 (209)
                       +.... +++|||+|||++..+..+|++++|++|.
T Consensus       487 -l~~l~-~~~~vi~iTH~~~~~~~ad~~~~l~k~~  519 (563)
T TIGR00634       487 -LAQLS-ERHQVLCVTHLPQVAAHADAHFKVEKEG  519 (563)
T ss_pred             -HHHHh-cCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence             22222 4789999999999888899999999875

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.38  E-value=1.9e-13  Score=113.86  Aligned_cols=77  Identities=23%  Similarity=0.391  Sum_probs=66.6

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      .+..+|||+||||.|||.++.+-+||+|||||++||..+...+.+                                 ++
T Consensus       149 aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve---------------------------------li  195 (235)
T COG4778         149 APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE---------------------------------LI  195 (235)
T ss_pred             CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHH---------------------------------HH
Confidence            356999999999999999999999999999999999998887766                                 45


Q ss_pred             hhhccccceeeeeeeehheecc-cceEEEee
Q psy12535        124 RTSFLKEKTVMLITHQIQYLTH-VDHVMLLE  153 (209)
Q Consensus       124 ~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~  153 (209)
                      .+.+.+|..+|=|-||.+.-+. +||++-|.
T Consensus       196 ~e~Ka~GaAlvGIFHDeevre~vadR~~~~~  226 (235)
T COG4778         196 REAKARGAALVGIFHDEEVREAVADRLLDVS  226 (235)
T ss_pred             HHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence            5556679999999999887655 79988775

>TIGR00606 rad50 rad50

Probab=99.37  E-value=3.1e-13  Score=140.02  Aligned_cols=96  Identities=18%  Similarity=0.280  Sum_probs=76.0

Q ss_pred             ceeeeeechhhhccCCCCCceeecccceecCCccch------hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535         19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRA------RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT   92 (209)
Q Consensus        19 ~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQ------RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~   92 (209)
                      .+++.++..+++..+|.| +|.++..+ .|||||+|      |++||||++.+|+||||||||++||+.+...+...+..
T Consensus      1173 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~ 1250 (1311)
T TIGR00606      1173 SASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVE 1250 (1311)
T ss_pred             HHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence            445556777889999999 89888775 89999999      99999999999999999999999999888777653321


Q ss_pred             ccccCCCCccccchhhhhcccccccchhhhhhhh-ccccceeeeeeeehheecc
Q psy12535         93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS-FLKEKTVMLITHQIQYLTH  145 (209)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~TiIvitH~l~~l~~  145 (209)
                                                   ++... ...+.|||+|||++.++..
T Consensus      1251 -----------------------------~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1251 -----------------------------IIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             -----------------------------HHHhhhhccCCeEEEEecCHHHHHH
Confidence                                         11110 1237899999999998653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0062|consensus

Probab=99.37  E-value=1e-13  Score=130.18  Aligned_cols=89  Identities=30%  Similarity=0.503  Sum_probs=72.0

Q ss_pred             ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR  124 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (209)
                      ..+||||-|=|++|||||..+||||||||||+.||..+..-+ +..+                                .
T Consensus       196 t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WL-e~yL--------------------------------~  242 (582)
T KOG0062|consen  196 TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWL-ENYL--------------------------------Q  242 (582)
T ss_pred             ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHH-HHHH--------------------------------h
Confidence            469999999999999999999999999999999999754333 3221                                1


Q ss_pred             hhccccceeeeeeeehheecc-cceEEEeeccce-eecchhhHHhhc
Q psy12535        125 TSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV-EAFGTTTQLLAS  169 (209)
Q Consensus       125 ~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i-~~~G~~~~l~~~  169 (209)
                      +   ...|+|+||||-.++.. |..|+.+++=++ .+.|++++..+.
T Consensus       243 t---~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~  286 (582)
T KOG0062|consen  243 T---WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT  286 (582)
T ss_pred             h---CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence            1   24799999999999986 799999988777 456888877653

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.37  E-value=1.2e-13  Score=115.30  Aligned_cols=88  Identities=16%  Similarity=0.070  Sum_probs=71.1

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .+.+..+.+|+||+|++.|++++ .+|+++|+|||++++|+.....+...++.                           
T Consensus        84 ~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~---------------------------  135 (200)
T cd03280          84 SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILE---------------------------  135 (200)
T ss_pred             hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHH---------------------------
Confidence            34556679999999999999885 79999999999999999887777543322                           


Q ss_pred             hhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF  160 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~  160 (209)
                           .....+.|+|++||+.+....+|++++|++|++...
T Consensus       136 -----~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~  171 (200)
T cd03280         136 -----ELLERGALVIATTHYGELKAYAYKREGVENASMEFD  171 (200)
T ss_pred             -----HHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence                 222347899999998766677899999999999765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.35  E-value=1.6e-13  Score=131.65  Aligned_cols=102  Identities=22%  Similarity=0.299  Sum_probs=81.3

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .+++.+.+++..|+|.+.++++.. .+.    =-..||+||||||++||.++++|++++|||.||+||+.++..+++.+.
T Consensus       485 ~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~  559 (604)
T COG4178         485 FSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK  559 (604)
T ss_pred             CChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHH
Confidence            566777888999999888777643 111    123799999999999999999999999999999999999988887543


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL  152 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L  152 (209)
                      .                                  ...+.|||-|.|+.......++.+-+
T Consensus       560 ~----------------------------------~lp~~tvISV~Hr~tl~~~h~~~l~l  586 (604)
T COG4178         560 E----------------------------------ELPDATVISVGHRPTLWNFHSRQLEL  586 (604)
T ss_pred             h----------------------------------hCCCCEEEEeccchhhHHHHhhheee
Confidence            2                                  22688999999998877766655544

>KOG0065|consensus

Probab=99.34  E-value=7.1e-14  Score=142.10  Aligned_cols=96  Identities=25%  Similarity=0.423  Sum_probs=82.5

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhc-ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRA-DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p-~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      -+.+||..|..||..||+||.||--|+.+| .||+|||||||||..++-.+++                           
T Consensus       919 ~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~---------------------------  971 (1391)
T KOG0065|consen  919 ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMR---------------------------  971 (1391)
T ss_pred             hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHH---------------------------
Confidence            467889999999999999999999999999 7888999999999998877765                           


Q ss_pred             ccchhhhhhhhccccceeeeeeeehhe--ecccceEEEee-ccceeecchhhH
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQY--LTHVDHVMLLE-KGSVEAFGTTTQ  165 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~--l~~~DrV~~L~-~G~i~~~G~~~~  165 (209)
                            ++++....|+|||++-|+++.  ++.+|++++|+ .|+.+..|+..+
T Consensus       972 ------~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  972 ------FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             ------HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence                  455556679999999999985  56789999997 579999987643

>PRK10869 recombination and repair protein; Provisional

Probab=99.33  E-value=7.8e-13  Score=126.59  Aligned_cols=76  Identities=21%  Similarity=0.222  Sum_probs=64.3

Q ss_pred             ecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         47 SLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      .|||||+|||+||++++.    +|+++|||||++|||..+...+.+.                                 
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~---------------------------------  476 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKL---------------------------------  476 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------------
Confidence            579999999999999997    5899999999999999888777663                                 


Q ss_pred             hhhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS  156 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~  156 (209)
                      ++.. .++.|||+|||++..+..+|+++++.++.
T Consensus       477 l~~l-~~~~qvi~iTH~~~~~~~ad~~~~v~k~~  509 (553)
T PRK10869        477 LRQL-GESTQVMCVTHLPQVAGCGHQHFFVSKET  509 (553)
T ss_pred             HHHH-hcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence            2222 24689999999999888899999998753

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.32  E-value=1.3e-13  Score=115.42  Aligned_cols=101  Identities=23%  Similarity=0.431  Sum_probs=81.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhh-----hc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYK-----RA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS  108 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~-----~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (209)
                      +++..+++...+||||+.|||-+|-.++.     ||  ++||+|||.++||...+.. .+.++.                
T Consensus       114 ~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~a-Ldrll~----------------  176 (248)
T COG4138         114 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSA-LDRLLS----------------  176 (248)
T ss_pred             cccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHH-HHHHHH----------------
Confidence            45566778888999999999999987662     33  6999999999999964443 343332                


Q ss_pred             hhcccccccchhhhhhhhccccceeeeeeeehhe-ecccceEEEeeccceeecchhhHHhhc
Q psy12535        109 FFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                                      .....|.||||.+||++. ++.+|++.+|+.|++...|..+|++..
T Consensus       177 ----------------~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~  222 (248)
T COG4138         177 ----------------ALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP  222 (248)
T ss_pred             ----------------HHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence                            224468999999999985 788999999999999999999998754

>KOG0927|consensus

Probab=99.32  E-value=2.2e-13  Score=128.55  Aligned_cols=105  Identities=26%  Similarity=0.364  Sum_probs=81.1

Q ss_pred             CcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcccc
Q psy12535         17 SRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT   96 (209)
Q Consensus        17 ~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~   96 (209)
                      ++.++..|++..+.+..|-          .+||+|||.||.+||.++.+|.+|||||||++||..+...+-+.+      
T Consensus       489 ~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeai------  552 (614)
T KOG0927|consen  489 MRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAI------  552 (614)
T ss_pred             HHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHH------
Confidence            3445556666655555553          589999999999999999999999999999999998766554421      


Q ss_pred             CCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535         97 GVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL  167 (209)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~  167 (209)
                                                    ....-++|+||||...+.. +++|.+.++|.+. ..|......
T Consensus       553 ------------------------------Ne~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk  595 (614)
T KOG0927|consen  553 ------------------------------NEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK  595 (614)
T ss_pred             ------------------------------hccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence                                          2235699999999999987 6999999988774 556665543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.32  E-value=1.1e-12  Score=122.31  Aligned_cols=87  Identities=29%  Similarity=0.467  Sum_probs=71.1

Q ss_pred             CCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccc
Q psy12535         34 PSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSA  113 (209)
Q Consensus        34 p~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (209)
                      |..++.++.....+||||+.|||+||.||.+++||+|||||++.||.+.+-.+-. +                       
T Consensus       442 pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vak-v-----------------------  497 (591)
T COG1245         442 PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAK-V-----------------------  497 (591)
T ss_pred             ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHH-H-----------------------
Confidence            5667777888889999999999999999999999999999999999964433322 2                       


Q ss_pred             ccccchhhhhhhhc-cccceeeeeeeehheecc-cceEEEee
Q psy12535        114 LGVRGALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLE  153 (209)
Q Consensus       114 ~~~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~  153 (209)
                               +++.. ..++|.++|-||+-++.. +||+++..
T Consensus       498 ---------IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         498 ---------IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             ---------HHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence                     22222 357899999999999987 69999995

>TIGR00618 sbcc exonuclease SbcC

Probab=99.32  E-value=1.1e-12  Score=133.12  Aligned_cols=80  Identities=16%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             ccceecCCccchhhhhHHHHhh----------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535         43 DKGVSLSGGQRARISLARAVYK----------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS  112 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~----------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (209)
                      ....+|||||++||+||+||+.          +|++|||||||++||+.+...+++.+                      
T Consensus       946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l---------------------- 1003 (1042)
T TIGR00618       946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGIL---------------------- 1003 (1042)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHH----------------------
Confidence            4557999999999999999986          79999999999999999888776632                      


Q ss_pred             cccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeecc
Q psy12535        113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKG  155 (209)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G  155 (209)
                                 ......|++|+||||+++.... +|+|+|++.|
T Consensus      1004 -----------~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1004 -----------DAIREGSKMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred             -----------HHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECC
Confidence                       2223358899999999998765 6999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.30  E-value=1.3e-12  Score=121.72  Aligned_cols=85  Identities=28%  Similarity=0.437  Sum_probs=71.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      +++..+++...+||||+-||+|||.|+.++++++++|||+|-||...+-.+..                           
T Consensus       202 ~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar---------------------------  254 (591)
T COG1245         202 GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR---------------------------  254 (591)
T ss_pred             cchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHH---------------------------
Confidence            56777888899999999999999999999999999999999999964443322                           


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEee
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE  153 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~  153 (209)
                            .++.+...+++||+|.||+..+.. +|-|.++-
T Consensus       255 ------~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         255 ------VIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             ------HHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence                  444555558999999999999986 68888874

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.29  E-value=1.5e-12  Score=121.69  Aligned_cols=89  Identities=21%  Similarity=0.366  Sum_probs=78.2

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      +..+||||++||+-+||-|..+|++||+.+||.|||.-....+.+.++.                               
T Consensus       400 ~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-------------------------------  448 (501)
T COG3845         400 PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-------------------------------  448 (501)
T ss_pred             chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-------------------------------
Confidence            4578999999999999999999999999999999999988888775543                               


Q ss_pred             hhhccccceeeeeeeehhee-cccceEEEeeccceeecchhhH
Q psy12535        124 RTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQ  165 (209)
Q Consensus       124 ~~~~~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~  165 (209)
                        ....|+.|++||-+++.+ ..||||++|.+|+++...++++
T Consensus       449 --~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         449 --LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             --HHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence              245799999999999986 4689999999999998877765

>PRK03918 chromosome segregation protein; Provisional

Probab=99.29  E-value=1.6e-12  Score=128.88  Aligned_cols=78  Identities=22%  Similarity=0.318  Sum_probs=62.2

Q ss_pred             cceecCCccch------hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         44 KGVSLSGGQRA------RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        44 ~g~~LSgGqrQ------RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      .+..|||||+|      |++||++++.+|+++||||||++||+.....+.+.+                           
T Consensus       785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l---------------------------  837 (880)
T PRK03918        785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM---------------------------  837 (880)
T ss_pred             ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHH---------------------------
Confidence            34689999999      555666888999999999999999998887776632                           


Q ss_pred             chhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                            ......+.|||+|||+.+....||+|++|..
T Consensus       838 ------~~~~~~~~~iiiith~~~~~~~~d~~~~l~~  868 (880)
T PRK03918        838 ------ERYLRKIPQVIIVSHDEELKDAADYVIRVSL  868 (880)
T ss_pred             ------HHHHhcCCEEEEEECCHHHHHhCCeEEEEEe
Confidence                  1212235699999999987777999999973

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.28  E-value=1.9e-12  Score=111.27  Aligned_cols=93  Identities=17%  Similarity=0.326  Sum_probs=80.8

Q ss_pred             eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535         46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT  125 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (209)
                      .+|.-|+=|+|.||.|++++|++||.||||+++++.++.++|..+...                                
T Consensus       157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~m--------------------------------  204 (330)
T COG4170         157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRL--------------------------------  204 (330)
T ss_pred             chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHh--------------------------------
Confidence            489999999999999999999999999999999999999988743211                                


Q ss_pred             hccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        126 SFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       126 ~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      ....+.||++++||+..+.. ||+|-||.-|+-++.++.+++.+..
T Consensus       205 NQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~P  250 (330)
T COG4170         205 NQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMP  250 (330)
T ss_pred             hccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCC
Confidence            02357899999999999864 8999999999999999999998754

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.28  E-value=4.1e-12  Score=124.55  Aligned_cols=111  Identities=26%  Similarity=0.369  Sum_probs=90.8

Q ss_pred             hhccCCCCCceeecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccch
Q psy12535         29 DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG  106 (209)
Q Consensus        29 ~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (209)
                      |+.....+|-|+ .+....|||||.||+-||.-+-+.=  =++|||||+.||-+.....+.+.                 
T Consensus       464 fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~t-----------------  525 (935)
T COG0178         464 FLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIET-----------------  525 (935)
T ss_pred             HHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHH-----------------
Confidence            455555566664 6777899999999999999998763  48899999999998877777653                 


Q ss_pred             hhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCc
Q psy12535        107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDF  173 (209)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~  173 (209)
                                      ++.+...|.|+|+|.||.+.+..||+|+=|      ..|+|+++|++++++++....
T Consensus       526 ----------------L~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~Sl  582 (935)
T COG0178         526 ----------------LKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESL  582 (935)
T ss_pred             ----------------HHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcch
Confidence                            333344699999999999999999999987      688999999999999887543

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.1e-11  Score=104.07  Aligned_cols=87  Identities=26%  Similarity=0.367  Sum_probs=62.8

Q ss_pred             CCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhc
Q psy12535         14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG   93 (209)
Q Consensus        14 ~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~   93 (209)
                      .+.+.+++...+|.. ++++|          ..+||-|||+||||||-++..++++|||||+++||.... .++..++..
T Consensus       108 ~~~i~~Al~~vgL~g-~~dlp----------~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~-a~l~~l~~~  175 (209)
T COG4133         108 AATIWEALAQVGLAG-LEDLP----------VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV-ALLTALMAA  175 (209)
T ss_pred             hhhHHHHHHHcCccc-ccccc----------hhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHH-HHHHHHHHH
Confidence            344555555555543 23334          359999999999999999999999999999999999644 444443332


Q ss_pred             cccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheec
Q psy12535         94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT  144 (209)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~  144 (209)
                                                      ....|-.||.+||+.-.+.
T Consensus       176 --------------------------------H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         176 --------------------------------HAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             --------------------------------HhcCCCEEEEecCCccCCC
Confidence                                            2345778999999766554

>PRK01156 chromosome segregation protein; Provisional

Probab=99.21  E-value=8.3e-12  Score=124.68  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=62.1

Q ss_pred             cceecCCccchhhhh------HHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         44 KGVSLSGGQRARISL------ARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        44 ~g~~LSgGqrQRlai------ARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      .+..|||||++|++|      ||+++.+|++++|||||++||+.....+.+.+...                        
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~------------------------  853 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYS------------------------  853 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHH------------------------
Confidence            456899999999975      59999999999999999999998777765532110                        


Q ss_pred             chhhhhhhhccc-c-ceeeeeeeehheecccceEEEee
Q psy12535        118 GALSLVRTSFLK-E-KTVMLITHQIQYLTHVDHVMLLE  153 (209)
Q Consensus       118 ~~~~~~~~~~~~-~-~TiIvitH~l~~l~~~DrV~~L~  153 (209)
                              .... + .|+|+|||+..++..||+|+.+.
T Consensus       854 --------~~~~~~~~~ii~ish~~~~~~~~d~ii~~~  883 (895)
T PRK01156        854 --------LKDSSDIPQVIMISHHRELLSVADVAYEVK  883 (895)
T ss_pred             --------HHhcCCCCeEEEEECchHHHHhcCeEEEEE
Confidence                    0111 2 48999999999888899999997

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.19  E-value=9.5e-12  Score=124.96  Aligned_cols=77  Identities=22%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             ccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         43 DKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ..+..|||||+||++||++++    .+|+++||||||++||+.+...+...                             
T Consensus      1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~----------------------------- 1135 (1179)
T TIGR02168      1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANL----------------------------- 1135 (1179)
T ss_pred             ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHH-----------------------------
Confidence            456789999999999999985    67799999999999999887777653                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE  153 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~  153 (209)
                          +... .++.++|+|||++..+..||+++.+.
T Consensus      1136 ----~~~~-~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168      1136 ----LKEF-SKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred             ----HHHh-ccCCEEEEEEcChhHHHHhhhHeeee
Confidence                2222 23478999999999888899987653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.16  E-value=8.3e-12  Score=96.82  Aligned_cols=40  Identities=40%  Similarity=0.705  Sum_probs=36.7

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcch
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLS   76 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts   76 (209)
                      .++.++.++..||+||||||+|||||+.+|++|||||||+
T Consensus        98 ~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   98 LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            4566777789999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.13  E-value=4.4e-11  Score=104.41  Aligned_cols=75  Identities=20%  Similarity=0.243  Sum_probs=57.0

Q ss_pred             eecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         46 VSLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ..||+||+|+++|||+|+         .+|+++||||||++||+.....+++.+                          
T Consensus       182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l--------------------------  235 (270)
T cd03242         182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAI--------------------------  235 (270)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHh--------------------------
Confidence            358999999999999985         799999999999999998887776532                          


Q ss_pred             cchhhhhhhhccccceeeeeeeehhee-ccc---ceEEEeeccce
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYL-THV---DHVMLLEKGSV  157 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l-~~~---DrV~~L~~G~i  157 (209)
                             ...   . .+++++|+...+ ..+   ++|+.|++|+|
T Consensus       236 -------~~~---~-q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i  269 (270)
T cd03242         236 -------EGR---V-QTFVTTTDLADFDALWLRRAQIFRVDAGTL  269 (270)
T ss_pred             -------hcC---C-CEEEEeCCchhccchhccCccEEEEeCcEE
Confidence                   111   2 455555555444 334   78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.12  E-value=3.7e-11  Score=122.35  Aligned_cols=79  Identities=22%  Similarity=0.254  Sum_probs=64.3

Q ss_pred             ccceecCCccchhhhhHHHHhh--------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         43 DKGVSLSGGQRARISLARAVYK--------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~--------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      ..+.+|||||+++++||+||+.        +|++|||||||++||+.+...+++.+                        
T Consensus       945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l------------------------ 1000 (1047)
T PRK10246        945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDAL------------------------ 1000 (1047)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHH------------------------
Confidence            4567999999999999999996        89999999999999999888877632                        


Q ss_pred             cccchhhhhhhhccccceeeeeeeehheeccc-ceEEEeec
Q psy12535        115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEK  154 (209)
Q Consensus       115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~-DrV~~L~~  154 (209)
                               ......|+||+||||...+.... .+|.|-..
T Consensus      1001 ---------~~l~~~g~~v~iisH~~~l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246       1001 ---------DALNASGKTIGVISHVEAMKERIPVQIKVKKI 1032 (1047)
T ss_pred             ---------HHHHHCCCEEEEEecHHHHHHhccceEEEEEC
Confidence                     22234589999999977776654 67777764

>KOG0066|consensus

Probab=99.12  E-value=7.8e-11  Score=109.99  Aligned_cols=88  Identities=25%  Similarity=0.382  Sum_probs=67.1

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      +.+.|||||+.||++|-.-+..|+||||||||++||..+...+-+.+                                 
T Consensus       701 kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAI---------------------------------  747 (807)
T KOG0066|consen  701 KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAI---------------------------------  747 (807)
T ss_pred             eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHH---------------------------------
Confidence            45789999999999999999999999999999999998766665532                                 


Q ss_pred             hhhccccceeeeeeeehheeccc-ceEEEeeccceee-cchhhHHh
Q psy12535        124 RTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEA-FGTTTQLL  167 (209)
Q Consensus       124 ~~~~~~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~~-~G~~~~l~  167 (209)
                      ..   -.-.||||||+-..+... -..+|+++-.|-+ .|.+++..
T Consensus       748 ne---y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk  790 (807)
T KOG0066|consen  748 NE---YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK  790 (807)
T ss_pred             Hh---ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence            11   145899999999988764 4556666554533 46665544

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.06  E-value=7e-11  Score=100.92  Aligned_cols=84  Identities=14%  Similarity=0.051  Sum_probs=65.1

Q ss_pred             ceecCCccchhhhhHHHH--hhhcceeeccCc---chhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         45 GVSLSGGQRARISLARAV--YKRADVYLLDDP---LSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal--~~~p~illLDEP---ts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      ...+|.|++|++.+++++  +.+|+++|||||   |+++|+.......   +.                           
T Consensus        87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~i---l~---------------------------  136 (222)
T cd03285          87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAI---AE---------------------------  136 (222)
T ss_pred             hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHH---HH---------------------------
Confidence            357999999999999999  899999999999   9999986543221   11                           


Q ss_pred             hhhhhhhccccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~  162 (209)
                        .+.+  ..+.++|++||..+....+|++..+++|++...++
T Consensus       137 --~l~~--~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         137 --YIAT--QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             --HHHh--cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence              1111  24789999999755556689999999999977654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.05  E-value=1.3e-10  Score=117.23  Aligned_cols=77  Identities=13%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             cceecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         44 KGVSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .+..||||||++++||++|+.    .|+++|||||+++||+.....+...+                             
T Consensus      1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l----------------------------- 1121 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLI----------------------------- 1121 (1164)
T ss_pred             cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHH-----------------------------
Confidence            456899999999999999985    67999999999999998877776532                             


Q ss_pred             hhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                          ... .++.++|+|||+...+..||+++.+..
T Consensus      1122 ----~~~-~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169      1122 ----REK-AGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred             ----HHh-cCCCeEEEEECcHHHHHhcceeEeEEE
Confidence                221 235689999999988888999987753

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0060|consensus

Probab=99.05  E-value=4.6e-11  Score=113.80  Aligned_cols=106  Identities=23%  Similarity=0.295  Sum_probs=85.4

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeeccc-ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDK-GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~-g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      .+++++.+.++.+++.+.+++. .|+++.+.-. ...||+||+||+++||.++++|++-||||.|||+|...+..++..|
T Consensus       535 ~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~  613 (659)
T KOG0060|consen  535 ASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC  613 (659)
T ss_pred             CCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHH
Confidence            4556677777777776655554 4677655433 4579999999999999999999999999999999999888887754


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                      .                                    ..|.|.|-|+|+-+....-|.++-|+.
T Consensus       614 r------------------------------------~~giT~iSVgHRkSL~kfHd~~L~~~g  641 (659)
T KOG0060|consen  614 R------------------------------------EMGITFISVGHRKSLWKFHDYVLRMDG  641 (659)
T ss_pred             H------------------------------------HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence            2                                    358899999999998888899999964

>PRK02224 chromosome segregation protein; Provisional

Probab=99.03  E-value=1.6e-10  Score=115.13  Aligned_cols=78  Identities=23%  Similarity=0.348  Sum_probs=61.5

Q ss_pred             ceecCCccch------hhhhHHHHhhh-----c-ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535         45 GVSLSGGQRA------RISLARAVYKR-----A-DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS  112 (209)
Q Consensus        45 g~~LSgGqrQ------RlaiARal~~~-----p-~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (209)
                      +..||||||+      |++||++++..     | +++||||||++||+.....+...                       
T Consensus       779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~-----------------------  835 (880)
T PRK02224        779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDL-----------------------  835 (880)
T ss_pred             hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHH-----------------------
Confidence            4689999999      89999999864     2 67999999999999877666542                       


Q ss_pred             cccccchhhhhhhhcccc-ceeeeeeeehheecccceEEEeecc
Q psy12535        113 ALGVRGALSLVRTSFLKE-KTVMLITHQIQYLTHVDHVMLLEKG  155 (209)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~-~TiIvitH~l~~l~~~DrV~~L~~G  155 (209)
                                +......+ .+||+|||+...+..+|++++|...
T Consensus       836 ----------l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~  869 (880)
T PRK02224        836 ----------VESMRRLGVEQIVVVSHDDELVGAADDLVRVEKD  869 (880)
T ss_pred             ----------HHHHHhcCCCeEEEEECChHHHHhcCeeEEeecC
Confidence                      22222234 4799999999998889999999754

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.00  E-value=9.7e-11  Score=97.77  Aligned_cols=92  Identities=13%  Similarity=0.066  Sum_probs=70.6

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      .+..+.++.+++| +..+.+++.+|+++|||||++++|+.....+...++.                             
T Consensus        86 ~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~-----------------------------  135 (202)
T cd03243          86 SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLE-----------------------------  135 (202)
T ss_pred             cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHH-----------------------------
Confidence            3445678877776 6666788899999999999999999877666443222                             


Q ss_pred             hhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l  166 (209)
                         .....+.++|++||+.+.+..++++..+++|++...+...++
T Consensus       136 ---~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~  177 (202)
T cd03243         136 ---HLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL  177 (202)
T ss_pred             ---HHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence               122347899999999998888999999999999888765443

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.98  E-value=1e-10  Score=101.88  Aligned_cols=94  Identities=15%  Similarity=0.190  Sum_probs=79.5

Q ss_pred             hhhhccCCCCCceeecccceecCCcc--------chhhhhHHHHhhhcceeeccCcchhhhhhhhhh-hhhhhhhccccC
Q psy12535         27 KEDFAQLPSGDRTLVGDKGVSLSGGQ--------RARISLARAVYKRADVYLLDDPLSAVDAHVGKH-LFEDCITGLHTG   97 (209)
Q Consensus        27 ~~~i~~lp~g~~t~vg~~g~~LSgGq--------rQRlaiARal~~~p~illLDEPts~LD~~~~~~-~~~~~~~~~~~~   97 (209)
                      -|.+.+++.++++.+++.|..+|||+        +||+++||++.++++|++|  ||+.+|..+... +.-         
T Consensus       109 iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~---------  177 (249)
T cd01128         109 LDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIF---------  177 (249)
T ss_pred             EECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHH---------
Confidence            35678889999999999999999999        9999999999999999999  999999644432 211         


Q ss_pred             CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccce
Q psy12535         98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV  157 (209)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i  157 (209)
                                                ......++|.|++||++.....+|.|.+|+.|++
T Consensus       178 --------------------------~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr  211 (249)
T cd01128         178 --------------------------EEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR  211 (249)
T ss_pred             --------------------------HHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc
Confidence                                      1112246899999999999999999999999998

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0066|consensus

Probab=98.97  E-value=6.3e-11  Score=110.61  Aligned_cols=85  Identities=25%  Similarity=0.477  Sum_probs=67.6

Q ss_pred             eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535         46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT  125 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (209)
                      ..+|||-|-||+|||||+..|-+|.|||||+.||.. ...+++..+.                                 
T Consensus       411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLN-AVIWLdNYLQ---------------------------------  456 (807)
T KOG0066|consen  411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLN-AVIWLDNYLQ---------------------------------  456 (807)
T ss_pred             cccCCceeeehhHHHHHhcCceeeeecCCccccccc-eeeehhhHHh---------------------------------
Confidence            479999999999999999999999999999999984 3333332211                                 


Q ss_pred             hccccceeeeeeeehheecc-cceEEEeeccceee-cchhhHH
Q psy12535        126 SFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEA-FGTTTQL  166 (209)
Q Consensus       126 ~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~-~G~~~~l  166 (209)
                        ...+|.++|||+..++.. |..|+.|++-++.+ .|++.-+
T Consensus       457 --gWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~F  497 (807)
T KOG0066|consen  457 --GWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLF  497 (807)
T ss_pred             --hhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence              135799999999999986 89999999988854 4665443

>PRK00064 recF recombination protein F; Reviewed

Probab=98.93  E-value=8.4e-10  Score=100.53  Aligned_cols=76  Identities=25%  Similarity=0.288  Sum_probs=61.2

Q ss_pred             eecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         46 VSLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ..+|.||+|+++||++|+         .+|+|+|||||+++||+.....+++.+                          
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l--------------------------  325 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERL--------------------------  325 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHH--------------------------
Confidence            579999999999999986         789999999999999998877776632                          


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecc---cceEEEeeccce
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTH---VDHVMLLEKGSV  157 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~---~DrV~~L~~G~i  157 (209)
                             ..   -+..++++||+.+.+..   .++++.|++|+|
T Consensus       326 -------~~---~~~qv~it~~~~~~~~~~~~~~~i~~v~~G~i  359 (361)
T PRK00064        326 -------KG---LGAQVFITTTDLEDLADLLENAKIFHVEQGKI  359 (361)
T ss_pred             -------hc---cCCEEEEEcCChhhhhhhhccCcEEEEeCCEE
Confidence                   11   13478999998776543   358999999987

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.88  E-value=5.3e-10  Score=103.21  Aligned_cols=84  Identities=23%  Similarity=0.429  Sum_probs=73.1

Q ss_pred             eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535         46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT  125 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (209)
                      ..||-|||+|+|+--|++-+-||++|||=.+.-||.-++..++.++..                             +  
T Consensus       447 ~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~-----------------------------L--  495 (546)
T COG4615         447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPL-----------------------------L--  495 (546)
T ss_pred             cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHH-----------------------------H--
Confidence            379999999999999999999999999999999998777766654432                             2  


Q ss_pred             hccccceeeeeeeehheecccceEEEeeccceeecc
Q psy12535        126 SFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       126 ~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G  161 (209)
                       ++.||||+.||||-.+...+||++.|++|++++.-
T Consensus       496 -K~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         496 -KEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  530 (546)
T ss_pred             -HHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence             33599999999999999999999999999998754

>KOG0065|consensus

Probab=98.82  E-value=1.9e-09  Score=110.45  Aligned_cols=106  Identities=22%  Similarity=0.292  Sum_probs=86.3

Q ss_pred             hccCCCCCceeeccc-ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535         30 FAQLPSGDRTLVGDK-GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS  108 (209)
Q Consensus        30 i~~lp~g~~t~vg~~-g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (209)
                      +..+....+|.||.. ....|||||+||.+|=+++.+|.++.+||+|.|||..+.-++...+.                 
T Consensus       242 ilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr-----------------  304 (1391)
T KOG0065|consen  242 ILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALR-----------------  304 (1391)
T ss_pred             HhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHH-----------------
Confidence            344556789999865 46799999999999999999999999999999999988777655322                 


Q ss_pred             hhcccccccchhhhhhhhc-cccceeeeeeeehhe--ecccceEEEeeccceeecchhhHHhh
Q psy12535        109 FFGSALGVRGALSLVRTSF-LKEKTVMLITHQIQY--LTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~-~~~~TiIvitH~l~~--l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                                      +.. .-+.|+++.-++...  ...+|.|++|.+|+++.+|+.++++.
T Consensus       305 ----------------~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~  351 (1391)
T KOG0065|consen  305 ----------------QLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP  351 (1391)
T ss_pred             ----------------HHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence                            222 236788888887653  56789999999999999999999875

>KOG2355|consensus

Probab=98.78  E-value=6.6e-09  Score=89.21  Aligned_cols=90  Identities=21%  Similarity=0.299  Sum_probs=73.8

Q ss_pred             ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR  124 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (209)
                      ...+|-|||+||.|+..|++.=+||+|||.|-.||...+..+++                                 +++
T Consensus       145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLe---------------------------------Flk  191 (291)
T KOG2355|consen  145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLE---------------------------------FLK  191 (291)
T ss_pred             EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHH---------------------------------HHH
Confidence            35789999999999999999999999999999999987766655                                 222


Q ss_pred             hh-ccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535        125 TS-FLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       125 ~~-~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      .. -.++.|||+.||-.+-++. ..++++|.+|+++-.-.++.+.
T Consensus       192 eEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~  236 (291)
T KOG2355|consen  192 EECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIK  236 (291)
T ss_pred             HHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhh
Confidence            22 2358999999999998875 6999999999998755544443

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.78  E-value=1.9e-09  Score=89.15  Aligned_cols=82  Identities=10%  Similarity=0.014  Sum_probs=55.7

Q ss_pred             ecccceecCCccchhhhhHHHHhh--hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYK--RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~--~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +..+.+.+|+|++|   +++++..  +|+++|+|||++++|+.....+...++..                         
T Consensus        55 ~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~-------------------------  106 (185)
T smart00534       55 LAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEY-------------------------  106 (185)
T ss_pred             hhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHH-------------------------
Confidence            34555688888776   4555555  99999999999999998776665543321                         


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccce
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSV  157 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i  157 (209)
                             ... .+.++|++||+.+....+++---++++.+
T Consensus       107 -------l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~  139 (185)
T smart00534      107 -------LLEKIGALTLFATHYHELTKLADEHPGVRNLHM  139 (185)
T ss_pred             -------HHhcCCCeEEEEecHHHHHHHhhcCccceEEEE
Confidence                   122 37799999999976555654333344443

>TIGR00611 recf recF protein

Probab=98.67  E-value=1.6e-08  Score=92.54  Aligned_cols=43  Identities=30%  Similarity=0.285  Sum_probs=39.5

Q ss_pred             eecCCccchhhhhHHHHhh---------hcceeeccCcchhhhhhhhhhhhh
Q psy12535         46 VSLSGGQRARISLARAVYK---------RADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~~---------~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      ..+|.||+++++||.+|+.         +|+|||||||+++||+.....+++
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~  325 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAE  325 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHH
Confidence            3689999999999999999         999999999999999988777766

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14079 recF recombination protein F; Provisional

Probab=98.62  E-value=3.3e-08  Score=89.77  Aligned_cols=77  Identities=17%  Similarity=0.161  Sum_probs=57.7

Q ss_pred             ecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         47 SLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      -+|+||+++++||..|+         .+|+|+|||||++.||......+.+.+.                          
T Consensus       263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~--------------------------  316 (349)
T PRK14079        263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAA--------------------------  316 (349)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHh--------------------------
Confidence            57999999999999999         8999999999999999987777755221                          


Q ss_pred             chhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~  162 (209)
                             .    . .-++|| ..+.-..+++++.+++|++.-+.+
T Consensus       317 -------~----~-~q~~it-~t~~~~~~~~~~~~~~~~~~~~~~  348 (349)
T PRK14079        317 -------S----L-PQAIVA-GTEAPPGAALTLRIEAGVFTPEAP  348 (349)
T ss_pred             -------c----C-CcEEEE-cCCCCCCCceEEEEeccEecCCCC
Confidence                   1    1 123444 223445689999999998865443

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.58  E-value=3.1e-08  Score=84.24  Aligned_cols=86  Identities=15%  Similarity=0.108  Sum_probs=61.1

Q ss_pred             eecCCccchhh----hhHHHHh--hhcceeeccCc---chhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         46 VSLSGGQRARI----SLARAVY--KRADVYLLDDP---LSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        46 ~~LSgGqrQRl----aiARal~--~~p~illLDEP---ts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      .++|.|+.+..    .|++++.  .+|.++|||||   |+++|...   +...++.                        
T Consensus        84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~---~~~~il~------------------------  136 (216)
T cd03284          84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS---IAWAIVE------------------------  136 (216)
T ss_pred             hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH---HHHHHHH------------------------
Confidence            47889988754    4666665  59999999999   99999853   1111111                        


Q ss_pred             cchhhhhhhhccc-cceeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535        117 RGALSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l  166 (209)
                              ..... +.|+|++||+.+....+|++..+.+|++...+..+++
T Consensus       137 --------~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l  179 (216)
T cd03284         137 --------YLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV  179 (216)
T ss_pred             --------HHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence                    11223 7799999999876667788877888998877666555

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.56  E-value=4.6e-08  Score=82.00  Aligned_cols=72  Identities=24%  Similarity=0.345  Sum_probs=51.9

Q ss_pred             ecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         47 SLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      .||||||.+++||--|+    ..++++|||||.++||......+.+.+                                
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l--------------------------------  183 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLL--------------------------------  183 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHH--------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc--------------------------------
Confidence            79999999999997664    567899999999999999888776633                                


Q ss_pred             hhhhccccceeeeeeeehheecccceEEEe
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLTHVDHVMLL  152 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~~~DrV~~L  152 (209)
                       ... .++.-+|++||+...+..+|+.+.+
T Consensus       184 -~~~-~~~~Q~ii~Th~~~~~~~a~~~~~v  211 (220)
T PF02463_consen  184 -KEL-SKQSQFIITTHNPEMFEDADKLIGV  211 (220)
T ss_dssp             -HHH-TTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred             -ccc-ccccccccccccccccccccccccc
Confidence             221 2356799999999999998876655

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.55  E-value=6e-08  Score=97.69  Aligned_cols=80  Identities=24%  Similarity=0.323  Sum_probs=63.2

Q ss_pred             ccceecCCccchhhhhHHHHh------hh--cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         43 DKGVSLSGGQRARISLARAVY------KR--ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~------~~--p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      +...+||||++=.++||-+|+      .+  -++++|||||..||+.....+.+.+                        
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l------------------------  866 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL------------------------  866 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHH------------------------
Confidence            456799999998877776654      55  6999999999999998887776632                        


Q ss_pred             cccchhhhhhhhccccceeeeeeeehheecccceEEEeecc
Q psy12535        115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG  155 (209)
Q Consensus       115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G  155 (209)
                               ......+.+|+||||+.++...+|.++.++..
T Consensus       867 ---------~~i~~~~~qiiIISH~eel~e~~~~~i~V~k~  898 (908)
T COG0419         867 ---------EELLSDGRQIIIISHVEELKERADVRIRVKKD  898 (908)
T ss_pred             ---------HHHHhcCCeEEEEeChHHHHHhCCeEEEEEec
Confidence                     22233478999999999999999998888653

>KOG0064|consensus

Probab=98.49  E-value=4.6e-08  Score=93.09  Aligned_cols=102  Identities=25%  Similarity=0.345  Sum_probs=69.8

Q ss_pred             CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535         13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT   92 (209)
Q Consensus        13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~   92 (209)
                      .+....+++....|+..++ -..|++..- .=-.-||||+|||+++||.++++|+.-+|||.||++-+..+..+|+..  
T Consensus       580 ~d~dL~~iL~~v~L~~i~q-r~~g~da~~-dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~a--  655 (728)
T KOG0064|consen  580 TDQDLEAILDIVHLEHILQ-REGGWDAVR-DWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAA--  655 (728)
T ss_pred             CHHHHHHHHHHhhHHHHHH-hccChhhhc-cHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHH--
Confidence            3344444555555543222 223333221 111369999999999999999999999999999999888888887742  


Q ss_pred             ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535         93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL  152 (209)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L  152 (209)
                                                        ..-|-+.|-|||+++....-.+.+-.
T Consensus       656 ----------------------------------k~~gi~llsithrpslwk~h~~ll~~  681 (728)
T KOG0064|consen  656 ----------------------------------KDAGISLLSITHRPSLWKYHTHLLEF  681 (728)
T ss_pred             ----------------------------------HhcCceEEEeecCccHHHHHHHHHhc
Confidence                                              22477999999999887654444433

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.45  E-value=8.2e-08  Score=81.13  Aligned_cols=72  Identities=13%  Similarity=0.063  Sum_probs=53.5

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      +.++.+.+|+|++|+ ..+-+++.+|+++|||||++|+|+.....+...++.                            
T Consensus        85 ~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~----------------------------  135 (204)
T cd03282          85 MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILE----------------------------  135 (204)
T ss_pred             cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHH----------------------------
Confidence            445567899999975 555667889999999999999999765555443222                            


Q ss_pred             hhhhhhccccceeeeeeeehheecc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH  145 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~  145 (209)
                          .....+.++|++||+.+.+..
T Consensus       136 ----~l~~~~~~~i~~TH~~~l~~~  156 (204)
T cd03282         136 ----CLIKKESTVFFATHFRDIAAI  156 (204)
T ss_pred             ----HHHhcCCEEEEECChHHHHHH
Confidence                223347899999999987764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0063|consensus

Probab=98.43  E-value=5.2e-08  Score=90.88  Aligned_cols=88  Identities=27%  Similarity=0.432  Sum_probs=67.9

Q ss_pred             CCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccc
Q psy12535         34 PSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSA  113 (209)
Q Consensus        34 p~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (209)
                      |...+..++....+||||+.||++||.+|-+.+++++.|||.+-||.+.+... ..+                       
T Consensus       443 pL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A-skv-----------------------  498 (592)
T KOG0063|consen  443 PLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA-SKV-----------------------  498 (592)
T ss_pred             hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH-HHH-----------------------
Confidence            33445666777889999999999999999999999999999999998633221 111                       


Q ss_pred             ccccchhhhhhhh-ccccceeeeeeeehheecc-cceEEEeec
Q psy12535        114 LGVRGALSLVRTS-FLKEKTVMLITHQIQYLTH-VDHVMLLEK  154 (209)
Q Consensus       114 ~~~~~~~~~~~~~-~~~~~TiIvitH~l~~l~~-~DrV~~L~~  154 (209)
                               +++. ...++|-.+|.|++-+... +|||++.+.
T Consensus       499 ---------ikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  499 ---------IKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             ---------HHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence                     1111 2357899999999988775 799999863

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.43  E-value=1.1e-07  Score=99.38  Aligned_cols=47  Identities=32%  Similarity=0.413  Sum_probs=39.6

Q ss_pred             cccceecCCccchhhh----hHHH--------HhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535         42 GDKGVSLSGGQRARIS----LARA--------VYKRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus        42 g~~g~~LSgGqrQRla----iARa--------l~~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      ......|||||||+++    +|++        +..+|+++||||||++||+.+...+++
T Consensus      1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ 1300 (1353)
T TIGR02680      1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFG 1300 (1353)
T ss_pred             hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHH
Confidence            3346789999999996    5755        457999999999999999998888876

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0063|consensus

Probab=98.41  E-value=1.6e-07  Score=87.76  Aligned_cols=81  Identities=25%  Similarity=0.414  Sum_probs=64.8

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .+.+....||||+-||.+||.+.+.+.|++++|||.|-||...+...-.                               
T Consensus       206 ~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~-------------------------------  254 (592)
T KOG0063|consen  206 LLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI-------------------------------  254 (592)
T ss_pred             HHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH-------------------------------
Confidence            3445567899999999999999999999999999999999964433322                               


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEee
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE  153 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~  153 (209)
                        .++.+...++=||+|.||++.+.. .|-|.+|.
T Consensus       255 --~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  255 --TIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY  287 (592)
T ss_pred             --HHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence              334444568899999999999886 58887774

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.41  E-value=6.5e-07  Score=72.50  Aligned_cols=86  Identities=14%  Similarity=0.038  Sum_probs=58.6

Q ss_pred             CCceeecccceecCCccch------hhhhHHHHhhhcceeeccCcchhhh---hhhhhhhhhhhhhccccCCCCccccch
Q psy12535         36 GDRTLVGDKGVSLSGGQRA------RISLARAVYKRADVYLLDDPLSAVD---AHVGKHLFEDCITGLHTGVPRFDSRWG  106 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQ------RlaiARal~~~p~illLDEPts~LD---~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (209)
                      |....+......+|+|++|      ....+.+...+|+++++|||++.+|   ......+.+                  
T Consensus        60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~------------------  121 (187)
T cd01124          60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR------------------  121 (187)
T ss_pred             CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH------------------
Confidence            3345556667789999998      4445555667999999999999999   332322222                  


Q ss_pred             hhhhcccccccchhhhhhhhccccceeeeeeeehhe---------ecc-cceEEEeec
Q psy12535        107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY---------LTH-VDHVMLLEK  154 (209)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~---------l~~-~DrV~~L~~  154 (209)
                                     ++......|.|+|+++|....         +.. +|.|+.|+.
T Consensus       122 ---------------l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~  164 (187)
T cd01124         122 ---------------LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL  164 (187)
T ss_pred             ---------------HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence                           222223358899999997654         444 799998873

A related protein is found in archaea.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.37  E-value=9e-08  Score=95.29  Aligned_cols=85  Identities=14%  Similarity=0.140  Sum_probs=62.6

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      -+....+.+|+||+|++.|++++ .+|.++|||||++|+|+.....+...++..                          
T Consensus       383 si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~--------------------------  435 (782)
T PRK00409        383 SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEY--------------------------  435 (782)
T ss_pred             chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHH--------------------------
Confidence            34455678999999999999998 889999999999999998776665543321                          


Q ss_pred             hhhhhhhccccceeeeeeeehheeccc-ceEEEeecccee
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVE  158 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~  158 (209)
                            ....+.++|++||+.+....+ ++..++ ++.+.
T Consensus       436 ------l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~  468 (782)
T PRK00409        436 ------LRKRGAKIIATTHYKELKALMYNREGVE-NASVE  468 (782)
T ss_pred             ------HHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEE
Confidence                  123478999999998876653 444333 44443

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.28  E-value=6e-07  Score=83.76  Aligned_cols=85  Identities=24%  Similarity=0.268  Sum_probs=70.0

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      -....+||-|||.|+.||+++..+|.+++.||-.|.||+.+...+...+...                            
T Consensus       502 Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel----------------------------  553 (593)
T COG2401         502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL----------------------------  553 (593)
T ss_pred             hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH----------------------------
Confidence            3456799999999999999999999999999999999999988886643221                            


Q ss_pred             hhhhhccccceeeeeeeehheecc--cceEEEeecccee
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVE  158 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~  158 (209)
                       .   ...+.|++++||+.+....  -|.++++.-|++.
T Consensus       554 -a---Re~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         554 -A---REAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             -H---HHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence             1   2248899999999999864  4999999877664

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.21  E-value=1.1e-06  Score=70.96  Aligned_cols=66  Identities=24%  Similarity=0.300  Sum_probs=48.4

Q ss_pred             ceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         45 GVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+|.|++|.+.|+.+++..+   .++++|||-++|.|..+..+.+.+                               
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l-------------------------------  282 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELL-------------------------------  282 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHH-------------------------------
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHH-------------------------------
Confidence            3478999999999999888776   899999999999999888887532                               


Q ss_pred             hhhhhccccceeeeeeeehhee
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYL  143 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l  143 (209)
                        ......+.-+|++||.+..+
T Consensus       283 --~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  283 --KELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             --HHTGGGSSEEEEEES-GGG-
T ss_pred             --HhhCccCCEEEEeCccchhc
Confidence              12122367899999998754

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.18  E-value=9.9e-07  Score=74.10  Aligned_cols=68  Identities=13%  Similarity=0.092  Sum_probs=45.8

Q ss_pred             chhhhhHHHHhh--hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcccc
Q psy12535         53 RARISLARAVYK--RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKE  130 (209)
Q Consensus        53 rQRlaiARal~~--~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (209)
                      .+|+.-+-..+.  +|+++|+|||++++|+.....+...++.                                ....++
T Consensus        91 ~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~--------------------------------~l~~~~  138 (199)
T cd03283          91 LRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLK--------------------------------FLKNKN  138 (199)
T ss_pred             HHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHH--------------------------------HHHHCC
Confidence            345444444445  9999999999999999877655443222                                122347


Q ss_pred             ceeeeeeeehheecc---cceEEEe
Q psy12535        131 KTVMLITHQIQYLTH---VDHVMLL  152 (209)
Q Consensus       131 ~TiIvitH~l~~l~~---~DrV~~L  152 (209)
                      .|+|++||+++.+..   .++|-.+
T Consensus       139 ~tiiivTH~~~~~~~~~~~~~v~~~  163 (199)
T cd03283         139 TIGIISTHDLELADLLDLDSAVRNY  163 (199)
T ss_pred             CEEEEEcCcHHHHHhhhcCCCeEEE
Confidence            899999999987654   3455444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK13695 putative NTPase; Provisional

Probab=98.17  E-value=6.3e-07  Score=72.89  Aligned_cols=82  Identities=21%  Similarity=0.219  Sum_probs=62.6

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccC--cchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDD--PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDE--Pts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      +.....+|++++-++.+++..+.+|+++|+||  |+.++|....+.+.                                
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~--------------------------------  120 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVE--------------------------------  120 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHH--------------------------------
Confidence            44556799999999999999999999999999  66566654322221                                


Q ss_pred             hhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF  160 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~  160 (209)
                           .....++++|+++|+......+|+|..+.+|+|.+.
T Consensus       121 -----~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~  156 (174)
T PRK13695        121 -----EVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYEL  156 (174)
T ss_pred             -----HHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEE
Confidence                 122357899999998544456899999999999765

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.13  E-value=1.6e-06  Score=73.64  Aligned_cols=62  Identities=19%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             cchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccc--
Q psy12535         52 QRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK--  129 (209)
Q Consensus        52 qrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  129 (209)
                      +-||+++|++++.+|.++|||||++|+|+.....+...++..                                ...+  
T Consensus        95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~--------------------------------l~~~~~  142 (213)
T cd03281          95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEH--------------------------------LLKRGP  142 (213)
T ss_pred             HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHH--------------------------------HHhcCC
Confidence            359999999999999999999999999997655554433322                                1112  


Q ss_pred             -cceeeeeeeehheecc
Q psy12535        130 -EKTVMLITHQIQYLTH  145 (209)
Q Consensus       130 -~~TiIvitH~l~~l~~  145 (209)
                       +.++|++||+.+.+..
T Consensus       143 ~~~~vli~TH~~~l~~~  159 (213)
T cd03281         143 ECPRVIVSTHFHELFNR  159 (213)
T ss_pred             CCcEEEEEcChHHHHHh
Confidence             3489999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.94  E-value=5.3e-06  Score=69.26  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=38.2

Q ss_pred             ecCCc--cchhhhhHHHHhhhcceeeccCcc-----hhhhhhhhhhhhhhh
Q psy12535         47 SLSGG--QRARISLARAVYKRADVYLLDDPL-----SAVDAHVGKHLFEDC   90 (209)
Q Consensus        47 ~LSgG--qrQRlaiARal~~~p~illLDEPt-----s~LD~~~~~~~~~~~   90 (209)
                      ..+|+  |++++.|||+++.+|+++++||||     ++||+.....+.+.+
T Consensus       150 a~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~  200 (215)
T PTZ00132        150 AKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL  200 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence            34444  888899999999999999999999     999999888887754

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=97.91  E-value=9.2e-06  Score=81.42  Aligned_cols=69  Identities=16%  Similarity=0.174  Sum_probs=52.7

Q ss_pred             hhhcceeeccCcchhh-hhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehh
Q psy12535         63 YKRADVYLLDDPLSAV-DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ  141 (209)
Q Consensus        63 ~~~p~illLDEPts~L-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~  141 (209)
                      ..+|.++++|||+.+| |+.....+.+                                 .+++..+.+.++|++||+++
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~---------------------------------~lk~~RK~~~~vil~Tq~~~  696 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIRE---------------------------------WLKVLRKANCAVVLATQSIS  696 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHH---------------------------------HHHHHHHcCCEEEEEeCCHH
Confidence            5799999999999999 5766555544                                 23333345789999999998


Q ss_pred             ee----------cccceEEEeeccceeecchhh
Q psy12535        142 YL----------THVDHVMLLEKGSVEAFGTTT  164 (209)
Q Consensus       142 ~l----------~~~DrV~~L~~G~i~~~G~~~  164 (209)
                      .+          ..|+.+++|.+|++...|..+
T Consensus       697 d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~~  729 (818)
T PRK13830        697 DAERSGIIDVLKESCPTKICLPNGAAREPGTRE  729 (818)
T ss_pred             HHhcCchHHHHHhcCCeEEECCCccccccchHH
Confidence            76          368999999999987766543

>TIGR01069 mutS2 MutS2 family protein

Probab=97.89  E-value=4.2e-06  Score=83.43  Aligned_cols=69  Identities=14%  Similarity=0.203  Sum_probs=53.8

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      +.+..+++|+|++++..|++++ .+|.++|||||++|+|+.....+...++.                            
T Consensus       379 i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe----------------------------  429 (771)
T TIGR01069       379 IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE----------------------------  429 (771)
T ss_pred             HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH----------------------------
Confidence            3345678999999999988877 78999999999999999877766443322                            


Q ss_pred             hhhhhhccccceeeeeeeehhe
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQY  142 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~  142 (209)
                          .....+.++|++||+.+.
T Consensus       430 ----~l~~~g~~viitTH~~eL  447 (771)
T TIGR01069       430 ----YLLKQNAQVLITTHYKEL  447 (771)
T ss_pred             ----HHHhcCCEEEEECChHHH
Confidence                222357899999998775

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.88  E-value=1.7e-05  Score=70.07  Aligned_cols=37  Identities=14%  Similarity=0.249  Sum_probs=28.5

Q ss_pred             ccceeeeeeeehhe--e------------cccceEEEeeccceeecchhhHHh
Q psy12535        129 KEKTVMLITHQIQY--L------------THVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       129 ~~~TiIvitH~l~~--l------------~~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      .|+|+|++||+.+.  +            ..++|+++|++|+  ..|+++++.
T Consensus       218 ~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~  268 (270)
T TIGR02858       218 AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY  268 (270)
T ss_pred             CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence            58899999996654  3            3479999999887  677776654

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=97.84  E-value=6.4e-06  Score=61.02  Aligned_cols=49  Identities=24%  Similarity=0.286  Sum_probs=34.5

Q ss_pred             ecccceecCCccchh-hhhHHH------Hhh------hcceeeccCcchhhhhhhhhhhhhh
Q psy12535         41 VGDKGVSLSGGQRAR-ISLARA------VYK------RADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        41 vg~~g~~LSgGqrQR-laiARa------l~~------~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      +......+||||||. +.+|.+      +..      .|++++|||||++||+.....+++.
T Consensus        26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~   87 (90)
T PF13558_consen   26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDL   87 (90)
T ss_dssp             EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHH
T ss_pred             eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHH
Confidence            445567899999953 333332      223      3789999999999999988877663

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.49  E-value=6.9e-05  Score=77.73  Aligned_cols=73  Identities=26%  Similarity=0.357  Sum_probs=58.8

Q ss_pred             cceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         44 KGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      ....||||||-..|||-.++    +..++++|||-=++||..+...+..                               
T Consensus      1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~------------------------------- 1111 (1163)
T COG1196        1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVAR------------------------------- 1111 (1163)
T ss_pred             chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHH-------------------------------
Confidence            45679999999999998876    5679999999999999998877755                               


Q ss_pred             hhhhhhhccccceeeeeeeehheecccceEE
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVM  150 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~  150 (209)
                        +|+.. .++.=.|||||+..++..+|+++
T Consensus      1112 --~i~e~-s~~sQFIvIThr~~~m~~ad~l~ 1139 (1163)
T COG1196        1112 --LIKEM-SKETQFIVITHRKGTMEAADRLV 1139 (1163)
T ss_pred             --HHHHh-CcCCeEEEEEcChHHHHHHHHHe
Confidence              33332 25667999999999998887654

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.21  E-value=0.00055  Score=58.11  Aligned_cols=37  Identities=19%  Similarity=0.037  Sum_probs=30.6

Q ss_pred             ecCCccchhhhhHHHHhh--hcceeeccCcchhhhhhhh
Q psy12535         47 SLSGGQRARISLARAVYK--RADVYLLDDPLSAVDAHVG   83 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~--~p~illLDEPts~LD~~~~   83 (209)
                      ..|.++.+.+.+++.++.  +|+++++||||+.+|....
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~  138 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEE  138 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCH
Confidence            356788999999999997  8999999999987775433

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.16  E-value=0.00079  Score=63.23  Aligned_cols=120  Identities=16%  Similarity=0.214  Sum_probs=82.5

Q ss_pred             eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535         20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP   99 (209)
Q Consensus        20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~   99 (209)
                      .+..+.+..||..||.|.+|-- =--.+=||-..|-..|.-||-..+++||+||=|||-..-.....++.++..-.    
T Consensus       296 ~V~~vDISpFI~~LP~g~dT~~-FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~k----  370 (448)
T PF09818_consen  296 SVEGVDISPFINNLPGGKDTTC-FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEK----  370 (448)
T ss_pred             eEeCccchHHHhhCCCCCCCCc-ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCC----
Confidence            3445567789999999999862 22236699999999999999999999999999999877655555555542211    


Q ss_pred             Cccccchhhhhcccccccchhhhhhhhcc-ccceeeeeee-ehheecccceEEEeecccee
Q psy12535        100 RFDSRWGRSFFGSALGVRGALSLVRTSFL-KEKTVMLITH-QIQYLTHVDHVMLLEKGSVE  158 (209)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~TiIvitH-~l~~l~~~DrV~~L~~G~i~  158 (209)
                                    .-..-+.+.++.++. .|-+.|+|+= .-.++..+|+|++|++=+..
T Consensus       371 --------------EPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~  417 (448)
T PF09818_consen  371 --------------EPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK  417 (448)
T ss_pred             --------------CCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence                          112223344444433 3655555555 44567789999999886543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.09  E-value=0.00043  Score=67.75  Aligned_cols=44  Identities=27%  Similarity=0.416  Sum_probs=32.8

Q ss_pred             ceecCCccchhhhhHHHHh------hhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVY------KRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~------~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      ...|||||+|-++||-.++      .+.++ |+|||++.||......+.+.
T Consensus       549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~  598 (650)
T TIGR03185       549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVN  598 (650)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHH
Confidence            3589999999987665544      23556 56999999999877776543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=96.98  E-value=0.00039  Score=59.51  Aligned_cols=60  Identities=10%  Similarity=0.048  Sum_probs=42.3

Q ss_pred             hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcc-ccce
Q psy12535         54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL-KEKT  132 (209)
Q Consensus        54 QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T  132 (209)
                      ++++-.-..+.+|.++|||||++|+++.....+...++..                             +   .. .+.+
T Consensus        98 ~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~-----------------------------L---~~~~~~~  145 (218)
T cd03286          98 SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEY-----------------------------L---VKKVKCL  145 (218)
T ss_pred             HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHH-----------------------------H---HHhcCCc
Confidence            3343333344789999999999999998877776643322                             1   12 3789


Q ss_pred             eeeeeeehheecc
Q psy12535        133 VMLITHQIQYLTH  145 (209)
Q Consensus       133 iIvitH~l~~l~~  145 (209)
                      +|++||+++....
T Consensus       146 ~i~~TH~~el~~~  158 (218)
T cd03286         146 TLFSTHYHSLCDE  158 (218)
T ss_pred             EEEEeccHHHHHH
Confidence            9999999887654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0964|consensus

Probab=96.93  E-value=0.00031  Score=70.78  Aligned_cols=78  Identities=23%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             eecCCccchhhhhHHHHhhh----cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         46 VSLSGGQRARISLARAVYKR----ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~~~----p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      .+||||||--+|||-.++-+    ++++||||--+|||+..+..+-..                                
T Consensus      1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~l-------------------------------- 1143 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADL-------------------------------- 1143 (1200)
T ss_pred             HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHH--------------------------------
Confidence            48999999999999988743    589999999999999887777553                                


Q ss_pred             hhhhhccccceeeeeeeehheecccceEEEee-ccce
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE-KGSV  157 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~-~G~i  157 (209)
                       ++.+ ....-.|++|-+++++..+|.++-+. +.+|
T Consensus      1144 -Ikel-S~~aQFI~TTFRpEll~vAdKfygV~f~nKv 1178 (1200)
T KOG0964|consen 1144 -IKEL-SDSAQFITTTFRPELLSVADKFYGVKFENKV 1178 (1200)
T ss_pred             -HHHH-hhccceEeecccHHHHHHHHhhhceeecccc
Confidence             2222 23356788888999999998877543 3444

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.81  E-value=0.0025  Score=54.61  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=23.4

Q ss_pred             ecCCccchhhhhHHHHhh----hcceeeccCcchhh
Q psy12535         47 SLSGGQRARISLARAVYK----RADVYLLDDPLSAV   78 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~----~p~illLDEPts~L   78 (209)
                      .+|+++.++-.+.+.+-.    +|+++++||||+++
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l  130 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI  130 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence            356776666555554443    59999999999999

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=96.76  E-value=0.0011  Score=56.82  Aligned_cols=59  Identities=15%  Similarity=0.109  Sum_probs=37.4

Q ss_pred             hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcc-ccce
Q psy12535         54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL-KEKT  132 (209)
Q Consensus        54 QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T  132 (209)
                      ++++-+-..+.++.++|||||.+|.|+.....+...++.                                .... .+.|
T Consensus        99 ~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~--------------------------------~l~~~~~~~  146 (222)
T cd03287          99 SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLH--------------------------------YLLEEKKCL  146 (222)
T ss_pred             HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHH--------------------------------HHHhccCCe
Confidence            333333334568999999999888776554444332222                                1122 3789


Q ss_pred             eeeeeeehheec
Q psy12535        133 VMLITHQIQYLT  144 (209)
Q Consensus       133 iIvitH~l~~l~  144 (209)
                      +|++||+.+...
T Consensus       147 ~i~~TH~~~l~~  158 (222)
T cd03287         147 VLFVTHYPSLGE  158 (222)
T ss_pred             EEEEcccHHHHH
Confidence            999999988654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0933|consensus

Probab=96.71  E-value=0.0011  Score=67.13  Aligned_cols=44  Identities=32%  Similarity=0.415  Sum_probs=36.7

Q ss_pred             ceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      -..||||||..|||+-.|+    +.+++|||||.-+|||....+.+-.
T Consensus      1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~ 1127 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGR 1127 (1174)
T ss_pred             HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHH
Confidence            3589999999999876654    6789999999999999977666644

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=96.67  E-value=0.0012  Score=66.74  Aligned_cols=55  Identities=15%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             hHHHHhhhcceeeccCcchhh-hhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeee
Q psy12535         58 LARAVYKRADVYLLDDPLSAV-DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLI  136 (209)
Q Consensus        58 iARal~~~p~illLDEPts~L-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvi  136 (209)
                      |++++..+|.++++|||+.+| |+.....+.+.                                 ++...+.+.+++++
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~---------------------------------lk~~RK~g~~vil~  726 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREW---------------------------------LKVLRKANCLVLMA  726 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHH---------------------------------HHHHHhcCCEEEEE
Confidence            678889999999999999999 67655555442                                 22223457899999


Q ss_pred             eeehheecc
Q psy12535        137 THQIQYLTH  145 (209)
Q Consensus       137 tH~l~~l~~  145 (209)
                      ||+++.+..
T Consensus       727 TQs~~d~~~  735 (852)
T PRK13891        727 TQSLSDAAN  735 (852)
T ss_pred             eCCHHHHhh
Confidence            999987643

>PF13175 AAA_15: AAA ATPase domain

Probab=96.46  E-value=0.0027  Score=57.09  Aligned_cols=46  Identities=11%  Similarity=0.260  Sum_probs=36.0

Q ss_pred             ceecCCccchhhhhHHHHh----hhc---c---eeeccCcchhhhhhhhhhhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVY----KRA---D---VYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~----~~p---~---illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ...+|.|.++.+.|+-.+.    ...   .   |+++|||-+.|.|..++.+++.+
T Consensus       339 l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L  394 (415)
T PF13175_consen  339 LSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFL  394 (415)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHH
Confidence            3578999998888776653    122   2   99999999999999888887754

>PF13166 AAA_13: AAA domain

Probab=96.32  E-value=0.0032  Score=61.66  Aligned_cols=67  Identities=22%  Similarity=0.425  Sum_probs=50.0

Q ss_pred             ceecCCccchhhhhHHHH--hh-------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         45 GVSLSGGQRARISLARAV--YK-------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal--~~-------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      ...||-|+|.-||+|-=|  +.       +..++|+|+|.|.||......+...+                         
T Consensus       498 ~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l-------------------------  552 (712)
T PF13166_consen  498 AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRL-------------------------  552 (712)
T ss_pred             cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHH-------------------------
Confidence            468999999999998533  33       56799999999999997666665532                         


Q ss_pred             ccchhhhhhhhc--cccceeeeeeeehheec
Q psy12535        116 VRGALSLVRTSF--LKEKTVMLITHQIQYLT  144 (209)
Q Consensus       116 ~~~~~~~~~~~~--~~~~TiIvitH~l~~l~  144 (209)
                              ....  .+.+=|||-||++.++.
T Consensus       553 --------~~~~~~~~~~QviIlTHn~~F~~  575 (712)
T PF13166_consen  553 --------KEEIKNSKFRQVIILTHNLYFFK  575 (712)
T ss_pred             --------HHHhhcCCcceEEEEeCcHHHHH
Confidence                    2222  34567999999998754

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.27  E-value=0.0081  Score=46.26  Aligned_cols=33  Identities=15%  Similarity=0.056  Sum_probs=26.4

Q ss_pred             CCccchhhhhHHHHhhhcceeeccCcchhhhhh
Q psy12535         49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAH   81 (209)
Q Consensus        49 SgGqrQRlaiARal~~~p~illLDEPts~LD~~   81 (209)
                      +..+.++++.+++...+|+++|+||+++-++..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~  101 (165)
T cd01120          69 AAARLLSKAERLRERGGDDLIILDELTRLVRAL  101 (165)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHH
Confidence            344455678888899999999999999877663

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG3910 Predicted ATPase [General function prediction only]

Probab=95.85  E-value=0.012  Score=50.31  Aligned_cols=78  Identities=17%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535         47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS  126 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (209)
                      ..|.|+-=---+.+.+ ++--|+|||||-++|-+.-+-.+..                                 .++..
T Consensus       129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella---------------------------------~l~~l  174 (233)
T COG3910         129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLA---------------------------------ILRDL  174 (233)
T ss_pred             hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHH---------------------------------HHHHH
Confidence            5699987655555555 4567999999999999964443332                                 34444


Q ss_pred             ccccceeeeeeeehheeccc-ceEEEeecccee
Q psy12535        127 FLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVE  158 (209)
Q Consensus       127 ~~~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~  158 (209)
                      ...|.-+|++||.+=.+..- -.|+-++.+-+.
T Consensus       175 a~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~  207 (233)
T COG3910         175 ADSGAQIIIATHSPILLAIPGAEIYEISESGIE  207 (233)
T ss_pred             HhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence            55688999999998888774 788888776653

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.78  E-value=0.0025  Score=60.36  Aligned_cols=72  Identities=22%  Similarity=0.338  Sum_probs=45.9

Q ss_pred             eeecccceecCCccchhhhhH--HHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLA--RAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiA--Ral~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ..+......+|+|++|||.|+  .++...|+.+          ....+.++.                            
T Consensus       107 ~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~----------------------------  148 (484)
T TIGR02655       107 ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFR----------------------------  148 (484)
T ss_pred             HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHH----------------------------
Confidence            334444568999999999999  5565555443          122233322                            


Q ss_pred             cchhhhhhhhccccceeeeeeeehhe--------e-cc-cceEEEee
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQY--------L-TH-VDHVMLLE  153 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~--------l-~~-~DrV~~L~  153 (209)
                           +++.....+.|+|+++|+.+.        + .. +|-|+.|+
T Consensus       149 -----Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       149 -----LVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             -----HHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence                 222333458999999998753        2 33 69999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=95.70  E-value=0.0078  Score=51.36  Aligned_cols=29  Identities=34%  Similarity=0.628  Sum_probs=22.4

Q ss_pred             CCccchhhhhHH----------------HHhhhcceeeccCcchhh
Q psy12535         49 SGGQRARISLAR----------------AVYKRADVYLLDDPLSAV   78 (209)
Q Consensus        49 SgGqrQRlaiAR----------------al~~~p~illLDEPts~L   78 (209)
                      .+|+.|++.+++                +...+|+++|+| |++++
T Consensus        79 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~  123 (239)
T cd01125          79 DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF  123 (239)
T ss_pred             eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence            367888887765                445799999999 88764

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>COG4637 Predicted ATPase [General function prediction only]

Probab=95.66  E-value=0.014  Score=53.27  Aligned_cols=74  Identities=28%  Similarity=0.421  Sum_probs=55.0

Q ss_pred             eecCCccchhhhhHHHHh--hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         46 VSLSGGQRARISLARAVY--KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~--~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      ..||-|+-+-+++|-+|.  +.|.+++||||-.+|-|..-..+..                                 ++
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~---------------------------------~~  315 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAE---------------------------------LM  315 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHH---------------------------------HH
Confidence            379999999999999998  5689999999999999865444433                                 22


Q ss_pred             hhhccccceeeeeeeehheeccc--ceEEEee
Q psy12535        124 RTSFLKEKTVMLITHQIQYLTHV--DHVMLLE  153 (209)
Q Consensus       124 ~~~~~~~~TiIvitH~l~~l~~~--DrV~~L~  153 (209)
                      +.. .+..-|||+||....+...  ..|++++
T Consensus       316 ~sA-ak~sQv~VsTHS~rLl~~~e~~~v~~~~  346 (373)
T COG4637         316 RSA-AKRSQVIVSTHSPRLLNAVEEHSVFWLD  346 (373)
T ss_pred             HHh-hccceEEEEeCCHHHHhhccccceEEec
Confidence            222 2333799999998887754  4555553

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.34  E-value=0.0071  Score=50.47  Aligned_cols=57  Identities=18%  Similarity=0.156  Sum_probs=40.7

Q ss_pred             hhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeee
Q psy12535         57 SLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLI  136 (209)
Q Consensus        57 aiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvi  136 (209)
                      +|+++|..+|+++++|||.   |......+.+                                     ....|++++.+
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~-------------------------------------~a~~G~~v~~t  105 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLALT-------------------------------------AAETGHLVMST  105 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH-------------------------------------HHHcCCEEEEE
Confidence            5788999999999999996   4432222222                                     12347889999


Q ss_pred             eeehheecccceEEEee
Q psy12535        137 THQIQYLTHVDHVMLLE  153 (209)
Q Consensus       137 tH~l~~l~~~DrV~~L~  153 (209)
                      +|..+.....+|++.|-
T Consensus       106 ~Ha~~~~~~~~Rl~~l~  122 (198)
T cd01131         106 LHTNSAAKTIDRIIDVF  122 (198)
T ss_pred             ecCCcHHHHHhHHHhhc
Confidence            99888766678887764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=95.29  E-value=0.007  Score=54.03  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=52.3

Q ss_pred             hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccc-ee
Q psy12535         55 RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK-TV  133 (209)
Q Consensus        55 RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Ti  133 (209)
                      .-.++.+|..+|+++++|||.+.   .. ..+++                                    ... .|. ++
T Consensus       208 ~~~l~~~Lr~~pd~ii~gE~r~~---e~-~~~l~------------------------------------a~~-~g~~~~  246 (308)
T TIGR02788       208 KDLLQSCLRMRPDRIILGELRGD---EA-FDFIR------------------------------------AVN-TGHPGS  246 (308)
T ss_pred             HHHHHHHhcCCCCeEEEeccCCH---HH-HHHHH------------------------------------HHh-cCCCeE
Confidence            34677788999999999999972   11 11212                                    111 343 56


Q ss_pred             eeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535        134 MLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       134 IvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      +.++|..+.....+|++.|..|++...|.+.+..
T Consensus       247 i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       247 ITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             EEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence            8999998866668999999999999888877776

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG3044 Predicted ATPase of the ABC class [General function prediction only]

Probab=95.12  E-value=0.051  Score=51.25  Aligned_cols=109  Identities=21%  Similarity=0.206  Sum_probs=75.2

Q ss_pred             chhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccc
Q psy12535         26 LKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW  105 (209)
Q Consensus        26 l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (209)
                      +..||+.+|.|-+|.-.-.+ .=||-+.+--.|=+++=...+++++||-+|+...-... +...                
T Consensus       300 ~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrd-Vlak----------------  361 (554)
T COG3044         300 LSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRD-VLAK----------------  361 (554)
T ss_pred             hHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhh-HHHH----------------
Confidence            55789999977777644333 56999999999999999999999999999998764333 2111                


Q ss_pred             hhhhhcccccccchhhhhhhhc---cccceeeeeeeehhe-ecccceEEEeecccee
Q psy12535        106 GRSFFGSALGVRGALSLVRTSF---LKEKTVMLITHQIQY-LTHVDHVMLLEKGSVE  158 (209)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~---~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~  158 (209)
                            +-.+.+.+..+.....   ..+-++|+||--+.. ++.+||+++|++-+-.
T Consensus       362 ------e~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk  412 (554)
T COG3044         362 ------ESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK  412 (554)
T ss_pred             ------HhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence                  1123333333333222   223688888887765 4568999999986654

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=95.04  E-value=0.016  Score=58.20  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=40.6

Q ss_pred             HhhhcceeeccCcchhhh-hhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeeh
Q psy12535         62 VYKRADVYLLDDPLSAVD-AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQI  140 (209)
Q Consensus        62 l~~~p~illLDEPts~LD-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l  140 (209)
                      +-.+|.++++|||+..|| +.....+.+                                 .++...+.+.+++++||++
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~---------------------------------~lk~~RK~~~~~i~~TQ~~  678 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLRE---------------------------------WLKTLRKKNVSVIFATQSL  678 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHH---------------------------------HHHHHHHcCCEEEEEECCH
Confidence            445899999999999999 444444433                                 2223334578999999988


Q ss_pred             hee----------cccceEEEeecc
Q psy12535        141 QYL----------THVDHVMLLEKG  155 (209)
Q Consensus       141 ~~l----------~~~DrV~~L~~G  155 (209)
                      +.+          ..++-.++|.+.
T Consensus       679 ~d~~~s~~~~~il~n~~t~i~L~~~  703 (811)
T PRK13873        679 ADIDGSAIAPAIIESCPTRIFLPNE  703 (811)
T ss_pred             HHHhcCchHHHHHHhCCeeEEcCCc
Confidence            643          234555556554

>KOG0962|consensus

Probab=94.97  E-value=0.017  Score=60.26  Aligned_cols=79  Identities=20%  Similarity=0.264  Sum_probs=55.1

Q ss_pred             ecCCccc------hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         47 SLSGGQR------ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        47 ~LSgGqr------QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      .=|-|||      =|+|+|=.+..+..||=|||||.+||..+..-+...+..-                          .
T Consensus      1183 RcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~I--------------------------I 1236 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRI--------------------------I 1236 (1294)
T ss_pred             CccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHH--------------------------H
Confidence            4588987      4889999999999999999999999998766554432211                          1


Q ss_pred             hhhhhhccccceeeeeeeehheecc------cceEEEee
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH------VDHVMLLE  153 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~------~DrV~~L~  153 (209)
                      ..-+  ...+.-.|+||||-.++..      +++++-+.
T Consensus      1237 ~~rr--~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~ 1273 (1294)
T KOG0962|consen 1237 EERR--RQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVK 1273 (1294)
T ss_pred             HHHh--hccCcceeeeehHHHHHHHhhhcccchheeeec
Confidence            1111  2346789999999877542      35666553

>KOG0996|consensus

Probab=94.83  E-value=0.02  Score=59.10  Aligned_cols=76  Identities=18%  Similarity=0.240  Sum_probs=58.3

Q ss_pred             cceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         44 KGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .+.+||||+|-.-+||-.++    +..++|++||--+|||..+..-|-.                               
T Consensus      1192 ~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVan------------------------------- 1240 (1293)
T KOG0996|consen 1192 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVAN------------------------------- 1240 (1293)
T ss_pred             hcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHH-------------------------------
Confidence            45799999999988888876    5679999999999999976544432                               


Q ss_pred             hhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE  153 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~  153 (209)
                        .++. ..++.-.|+||=+-++++.++|.+-+.
T Consensus      1241 --YIkE-rTkNAQFIIISLRnnMFELa~rLvGIY 1271 (1293)
T KOG0996|consen 1241 --YIKE-RTKNAQFIIISLRNNMFELANRLVGIY 1271 (1293)
T ss_pred             --HHHH-hccCCeEEEEEehhhHHHHHhhheeeE
Confidence              2222 235667899998888888888877654

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=94.76  E-value=0.034  Score=53.85  Aligned_cols=75  Identities=24%  Similarity=0.329  Sum_probs=55.9

Q ss_pred             eecCCccchhhhhHHHHh--hh--cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         46 VSLSGGQRARISLARAVY--KR--ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~--~~--p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      .-.|||+--|++||--.+  ..  .+.|||||--+|+--.+...|-+.+.                              
T Consensus       430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~------------------------------  479 (557)
T COG0497         430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLR------------------------------  479 (557)
T ss_pred             hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHH------------------------------
Confidence            346999999999998655  22  55999999999998877777755321                              


Q ss_pred             hhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                         + ..+..-|++|||.+.....+|.=+++.+
T Consensus       480 ---~-Ls~~~QVl~VTHlPQVAa~ad~H~~V~K  508 (557)
T COG0497         480 ---R-LSEHHQVLCVTHLPQVAAMADTHFLVEK  508 (557)
T ss_pred             ---H-HhcCceEEEEecHHHHHhhhcceEEEEE
Confidence               2 1245679999999999999865555543

>TIGR00152 dephospho-CoA kinase

Probab=94.57  E-value=0.027  Score=46.21  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=54.3

Q ss_pred             CccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccc
Q psy12535         50 GGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK  129 (209)
Q Consensus        50 gGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (209)
                      .|+-+|..||.++..+|+.+..+|  +.+||...+.+.+.+                                 ......
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i---------------------------------~~~~~~  104 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLL---------------------------------AQFQSK  104 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHH---------------------------------HHhhcC
Confidence            589999999999999999988776  789998766665432                                 222223


Q ss_pred             cceeeeeeeehhe--ec-ccceEEEeeccc
Q psy12535        130 EKTVMLITHQIQY--LT-HVDHVMLLEKGS  156 (209)
Q Consensus       130 ~~TiIvitH~l~~--l~-~~DrV~~L~~G~  156 (209)
                      +.+||+.+|.+..  +. .+|.|++++.+.
T Consensus       105 ~~~vvi~~pll~e~~~~~~~D~vv~V~~~~  134 (188)
T TIGR00152       105 LAYVLLDVPLLFENKLRSLCDRVIVVDVSP  134 (188)
T ss_pred             CCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence            5689999998853  43 589999998653

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=94.01  E-value=0.072  Score=49.19  Aligned_cols=42  Identities=29%  Similarity=0.318  Sum_probs=35.7

Q ss_pred             ecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhh
Q psy12535         47 SLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      -.|-||++-+++|--|+         ..++||||||-+|-||..-+..+++
T Consensus       275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~  325 (363)
T COG1195         275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLD  325 (363)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHh
Confidence            57999999999887654         5689999999999999987777765

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=93.47  E-value=0.058  Score=54.20  Aligned_cols=49  Identities=10%  Similarity=0.194  Sum_probs=35.3

Q ss_pred             HHhhhcceeeccCcchhhh-hhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeee
Q psy12535         61 AVYKRADVYLLDDPLSAVD-AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQ  139 (209)
Q Consensus        61 al~~~p~illLDEPts~LD-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~  139 (209)
                      .+..+|.++++|||...|| +.....+.+                                 .++...+.+.+++++||+
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~---------------------------------~lk~~RK~~~~~i~~TQ~  684 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKD---------------------------------WLKVLRKLNTFVIFATQS  684 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHH---------------------------------HHHHHHHcCCEEEEEeCC
Confidence            3456899999999999999 554544433                                 223333457899999999


Q ss_pred             hhe
Q psy12535        140 IQY  142 (209)
Q Consensus       140 l~~  142 (209)
                      ++.
T Consensus       685 ~~d  687 (800)
T PRK13898        685 VED  687 (800)
T ss_pred             HHH
Confidence            865

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=93.38  E-value=0.05  Score=51.29  Aligned_cols=39  Identities=13%  Similarity=-0.008  Sum_probs=34.2

Q ss_pred             ccceecCCccchhhhhHHHHh-------hhcceeeccCcchhhhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVY-------KRADVYLLDDPLSAVDAH   81 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~-------~~p~illLDEPts~LD~~   81 (209)
                      ....+.|.|+|+|++.+.+.+       .++-++++|+||+..|+.
T Consensus       217 ~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~  262 (432)
T PRK06793        217 VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR  262 (432)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence            344678999999999999888       789999999999999995

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=92.60  E-value=0.094  Score=53.29  Aligned_cols=35  Identities=20%  Similarity=0.081  Sum_probs=28.3

Q ss_pred             ecCCccchhhhhHHHHhh--hcceeeccCc---chhhhhh
Q psy12535         47 SLSGGQRARISLARAVYK--RADVYLLDDP---LSAVDAH   81 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~--~p~illLDEP---ts~LD~~   81 (209)
                      ++|--+.....++.+|-.  ++.++|||||   |+.+|..
T Consensus       666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~  705 (854)
T PRK05399        666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL  705 (854)
T ss_pred             CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH
Confidence            456666788888888876  8999999999   8888853

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.15  E-value=0.21  Score=48.65  Aligned_cols=71  Identities=24%  Similarity=0.351  Sum_probs=49.6

Q ss_pred             ecccce-ecCCccchhhhhHHH---Hhhhc-----ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535         41 VGDKGV-SLSGGQRARISLARA---VYKRA-----DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG  111 (209)
Q Consensus        41 vg~~g~-~LSgGqrQRlaiARa---l~~~p-----~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (209)
                      -|+... .||-|++.-++++-=   |.-+|     +++++|+|.|.+|.....+.+.                       
T Consensus       522 ~g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~-----------------------  578 (758)
T COG4694         522 DGQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSV-----------------------  578 (758)
T ss_pred             cCccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHH-----------------------
Confidence            344444 499999999987644   44566     4789999999999854333332                       


Q ss_pred             ccccccchhhhhhhhccccceeeeeeeehheec
Q psy12535        112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLT  144 (209)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~  144 (209)
                                +++.+...++-||+.||+..+++
T Consensus       579 ----------~v~~~~t~~kQviVLtHntYF~r  601 (758)
T COG4694         579 ----------LVKEEKTNIKQVIVLTHNTYFYR  601 (758)
T ss_pred             ----------HHHHHHhCceEEEEEeccceehH
Confidence                      34444556889999999966654

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=91.17  E-value=0.2  Score=47.30  Aligned_cols=34  Identities=15%  Similarity=0.036  Sum_probs=29.9

Q ss_pred             eeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535        132 TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       132 TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l  166 (209)
                      ||++.+|+++. ..+|++.++.+|+|+..+...+-
T Consensus       308 TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~~  341 (438)
T PRK07721        308 TVLVDGDDMNE-PIADTVRGILDGHFVLDRQLANK  341 (438)
T ss_pred             EEEEECCCCCc-hhhhhEEEecCEEEEEeccHHHC
Confidence            99999999985 66899999999999998877553

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=90.57  E-value=0.087  Score=47.76  Aligned_cols=30  Identities=20%  Similarity=0.198  Sum_probs=22.5

Q ss_pred             hhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535         56 ISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus        56 laiARal~~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      -+|+++|..+||++++||+.   |..+....++
T Consensus       186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~  215 (343)
T TIGR01420       186 NALRAALREDPDVILIGEMR---DLETVELALT  215 (343)
T ss_pred             HHHHHhhccCCCEEEEeCCC---CHHHHHHHHH
Confidence            35788899999999999997   6655444333

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=90.12  E-value=0.21  Score=45.17  Aligned_cols=42  Identities=12%  Similarity=0.277  Sum_probs=30.9

Q ss_pred             eeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheec
Q psy12535         69 YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT  144 (209)
Q Consensus        69 llLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~  144 (209)
                      +++|||+.+||+...+.+.+.                                 +.+. .++.++|++||+.+.+.
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~---------------------------------LEep-~~~~~~Ilvth~~~~ll  157 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKV---------------------------------LEEP-PPQVVFLLVSHAADKVL  157 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHH---------------------------------HHhC-cCCCEEEEEeCChHhCh
Confidence            456899999999888777652                                 2232 24678999999988654

>KOG0018|consensus

Probab=89.67  E-value=0.33  Score=50.06  Aligned_cols=73  Identities=19%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             cceecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         44 KGVSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      ...+||||+|--.|||--++-    .++.++|||--+|||..+...+..                               
T Consensus      1048 ~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvas------------------------------- 1096 (1141)
T KOG0018|consen 1048 PMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVAS------------------------------- 1096 (1141)
T ss_pred             chhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHH-------------------------------
Confidence            345899999999999988874    468999999999999987766643                               


Q ss_pred             hhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL  152 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L  152 (209)
                        .|+   ..+.-.||||=-.++...+|-.+-+
T Consensus      1097 --yIr---~~~~Q~IvISLK~~~y~kadaLVGv 1124 (1141)
T KOG0018|consen 1097 --YIR---SSNFQFIVISLKEEFYQKADALVGV 1124 (1141)
T ss_pred             --HHh---cCCceEEEEeccHHHhhhhhceeee
Confidence              233   2355678888777777777655544

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=83.83  E-value=1.9  Score=36.08  Aligned_cols=32  Identities=16%  Similarity=0.156  Sum_probs=21.5

Q ss_pred             hhhhhccccceeeeeeeeh---------heecc-cceEEEee
Q psy12535        122 LVRTSFLKEKTVMLITHQI---------QYLTH-VDHVMLLE  153 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l---------~~l~~-~DrV~~L~  153 (209)
                      +++.....+.|+++++|..         ..+.. ||.|++|+
T Consensus       136 l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       136 FYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             HHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            3444444688999999952         22444 69999995

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=83.74  E-value=0.43  Score=44.88  Aligned_cols=67  Identities=21%  Similarity=0.318  Sum_probs=40.4

Q ss_pred             hcceeeccCcchhhhhh-hhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeee-eehhe
Q psy12535         65 RADVYLLDDPLSAVDAH-VGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT-HQIQY  142 (209)
Q Consensus        65 ~p~illLDEPts~LD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvit-H~l~~  142 (209)
                      ++++||+|||...++.. ++..++.                                 ++......++.+|++| |.+..
T Consensus       194 ~~dvLlIDDi~~l~~~~~~q~elf~---------------------------------~~n~l~~~~k~iIitsd~~p~~  240 (440)
T PRK14088        194 KVDVLLIDDVQFLIGKTGVQTELFH---------------------------------TFNELHDSGKQIVICSDREPQK  240 (440)
T ss_pred             cCCEEEEechhhhcCcHHHHHHHHH---------------------------------HHHHHHHcCCeEEEECCCCHHH
Confidence            69999999999887653 2334444                                 2222234466777766 67666


Q ss_pred             eccc-ceEE-Eeeccceeecchhh
Q psy12535        143 LTHV-DHVM-LLEKGSVEAFGTTT  164 (209)
Q Consensus       143 l~~~-DrV~-~L~~G~i~~~G~~~  164 (209)
                      +... +++. -+..|-++...+|+
T Consensus       241 l~~l~~rL~SR~~~gl~v~i~~pd  264 (440)
T PRK14088        241 LSEFQDRLVSRFQMGLVAKLEPPD  264 (440)
T ss_pred             HHHHHHHHhhHHhcCceEeeCCCC
Confidence            6543 4443 24566666655544

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=80.55  E-value=2.1  Score=30.95  Aligned_cols=42  Identities=38%  Similarity=0.373  Sum_probs=33.6

Q ss_pred             ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL   86 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~   86 (209)
                      .....+++..+..+++|-...|.++++||+..-.+.......
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~   99 (148)
T smart00382       58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALL   99 (148)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence            345677788888888888888999999999998888655443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		2e-32
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		6e-23
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		6e-23
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		7e-23
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		9e-23
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		1e-22
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		1e-22
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		1e-22
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		1e-22
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		1e-22
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		1e-22
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		1e-22
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		4e-21
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		5e-21
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		3e-12
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		7e-12
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-10
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-10
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		6e-10
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		7e-10
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		8e-10
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		9e-10
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-09
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		1e-09
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		4e-09
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		1e-08
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		1e-08
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		1e-08
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		2e-08
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-08
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		3e-08
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		4e-08
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		9e-08
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		1e-07
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		1e-07
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		1e-07
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		2e-07
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		5e-07
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		2e-06
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		3e-06
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		4e-06
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-06
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		5e-06
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		8e-06
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		8e-06
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		1e-05
1g29_1	372	Malk Length = 372		1e-05
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		3e-05
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		6e-05
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		6e-05
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		7e-05
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		2e-04
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		2e-04
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		8e-04

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 95/164 (57%), Gaps = 31/164 (18%)
Query: 14  DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDD 73
           +P  R V++ CAL  D   LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY  AD+YL DD
Sbjct: 94  EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153
Query: 74  PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTV 133
           PLSAVDAHVGKH+FE+ I                       G +G         LK KT 
Sbjct: 154 PLSAVDAHVGKHIFENVI-----------------------GPKG--------MLKNKTR 182
Query: 134 MLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
           +L+TH + YL  VD ++++  G +   G+  +LLA    F + L
Sbjct: 183 ILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 33/193 (17%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           +G  + +   R V+K C L+ED ++    D  ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 120 IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    K +FE C+  L                                 
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 206
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
           +  KT +L+T ++++L   D +++L +GS   +GT ++L     DF+  L   +  D+  
Sbjct: 207 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFS 266
Query: 188 NEVDDNASGTLLH 200
            E  ++     LH
Sbjct: 267 AERRNSILTETLH 279

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 33/193 (17%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           +G  + +   R V+K C L+ED ++    D  ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 120 IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    K +FE C+  L                                 
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 206
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
           +  KT +L+T ++++L   D +++L +GS   +GT ++L     DF+  L   +  D+  
Sbjct: 207 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFS 266
Query: 188 NEVDDNASGTLLH 200
            E  ++     LH
Sbjct: 267 AERRNSILTETLH 279

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 33/169 (19%)
Query: 9   GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
           G  + +   R V+K C L+ED ++    D  ++G+ G++LSGGQRARISLARAVYK AD+
Sbjct: 122 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 181
Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
           YLLD P   +D    K +FE C+  L                                 +
Sbjct: 182 YLLDSPFGYLDVLTEKEIFESCVCKL---------------------------------M 208
Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
             KT +L+T ++++L   D +++L +GS   +GT ++L     DF+  L
Sbjct: 209 ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 257

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 33/170 (19%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           +G  + +   R V+K C L+ED ++    D  ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 90  IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 149
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    K +FE C+  L                                 
Sbjct: 150 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 176
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
           +  KT +L+T ++++L   D +++L +GS   +GT ++L     DF+  L
Sbjct: 177 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 226

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 33/182 (18%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           +G  + +   + VVK C L++D  +    D T++G+ GV+LSGGQRARISLARAVYK AD
Sbjct: 120 IGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 179
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    + +FE C+  L                                 
Sbjct: 180 LYLLDSPFGYLDVFTEEQVFESCVCKL--------------------------------- 206
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
           +  KT +L+T ++++L   D +++L +GS   +GT ++L +   DF+  L   +  D+  
Sbjct: 207 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFT 266
Query: 188 NE 189
            E
Sbjct: 267 EE 268

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 33/182 (18%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
            G  + +   + VVK C L++D  +    D T++G+ GV+LSGGQRARISLARAVYK AD
Sbjct: 121 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 180
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    + +FE C+  L                                 
Sbjct: 181 LYLLDSPFGYLDVFTEEQVFESCVCKL--------------------------------- 207
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
           +  KT +L+T ++++L   D +++L +GS   +GT ++L +   DF+  L   +  D+  
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFT 267
Query: 188 NE 189
            E
Sbjct: 268 EE 269

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 33/170 (19%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
            G  + +   R V+K C L+ED ++    D  ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 103 FGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 162
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    K +FE C+  L                                 
Sbjct: 163 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 189
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
           +  KT +L+T ++++L   D +++L +GS   +GT ++L     DF+  L
Sbjct: 190 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 239

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 33/170 (19%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
            G  + +   R V+K C L+ED ++    D  ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 91  FGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    K +FE C+  L                                 
Sbjct: 151 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 177
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
           +  KT +L+T ++++L   D +++L +GS   +GT ++L     DF+  L
Sbjct: 178 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 33/181 (18%)
Query: 9   GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
           G  + +   + VVK C L++D  +    D T++G+ GV+LSGGQRARISLARAVYK AD+
Sbjct: 122 GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 181
Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
           YLLD P   +D    + +FE C+  L                                 +
Sbjct: 182 YLLDSPFGYLDVFTEEQVFESCVCKL---------------------------------M 208
Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAEN 188
             KT +L+T ++++L   D +++L +GS   +GT ++L +   DF+  L   +  D+   
Sbjct: 209 ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE 268
Query: 189 E 189
           E
Sbjct: 269 E 269

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 33/181 (18%)
Query: 9   GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
           G  + +   + VVK C L++D  +    D T++G+ GV+LSGGQRARISLARAVYK AD+
Sbjct: 122 GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 181
Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
           YLLD P   +D    + +FE C+  L                                 +
Sbjct: 182 YLLDSPFGYLDVFTEEQVFESCVCKL---------------------------------M 208
Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAEN 188
             KT +L+T ++++L   D +++L +GS   +GT ++L +   DF+  L   +  D+   
Sbjct: 209 ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE 268
Query: 189 E 189
           E
Sbjct: 269 E 269

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 33/182 (18%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
            G  + +   + VVK C L++D  +    D T++G+ GV+LSGGQRARISLARAVYK AD
Sbjct: 121 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 180
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    + +FE C+  L                                 
Sbjct: 181 LYLLDSPFGYLDVFTEEQVFESCVCKL--------------------------------- 207
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
           +  KT +L+T ++++L   D +++L +GS   +GT ++L +   DF+  L   +  D+  
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFT 267
Query: 188 NE 189
            E
Sbjct: 268 EE 269

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 33/170 (19%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           +G  + +   R V+K C L+ED ++    D  ++G+ G++LS GQ+A+ISLARAVYK AD
Sbjct: 120 IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDAD 179
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    K +FE C+  L                                 
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 206
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
           +  KT +L+T ++++L   D +++L +GS   +GT ++L     DF+  L
Sbjct: 207 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 256

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 33/170 (19%)
Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
            G  + +   R V+K C L+ED ++    D  ++G+ G++LS GQ+A+ISLARAVYK AD
Sbjct: 121 FGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDAD 180
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    K +FE C+  L                                 
Sbjct: 181 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 207
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
           +  KT +L+T ++++L   D +++L +GS   +GT ++L     DF+  L
Sbjct: 208 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 257

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 43/186 (23%)
Query: 11  GHPDPNS------RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYK 64
           G  DP+S      +RV +V          P G  T+VG+KGV LSGGQ+ RI++ARA+ K
Sbjct: 441 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500
Query: 65  RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124
              + LLD+  SA+DA   ++L ++ +  L  G                           
Sbjct: 501 NPKILLLDEATSALDAE-NEYLVQEALDRLMDG--------------------------- 532
Query: 125 TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA--SGLDFTQLLDAPEE 182
                 +TV++I H++  + + + V +L++G +  +G   +LL+  +G+ + +L++    
Sbjct: 533 ------RTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGI-YRKLMNKQSF 585
Query: 183 EDKAEN 188
              AEN
Sbjct: 586 ISAAEN 591

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 40/164 (24%)
Query: 11  GHPDPNS------RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYK 64
           G  DP+S      +RV +V          P G  T+VG+KGV LSGGQ+ RI++ARA+ K
Sbjct: 472 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 531
Query: 65  RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124
              + LLD+  SA+DA   ++L ++ +  L  G                           
Sbjct: 532 NPKILLLDEATSALDAE-NEYLVQEALDRLMDG--------------------------- 563
Query: 125 TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
                 +TV++I H +  + + + V +L++G +  +G   +LL+
Sbjct: 564 ------RTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLS 601

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 19   RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
            R  K   + +    LP    T VGDKG  LSGGQ+ RI++ARA+ ++  + LLD+  SA+
Sbjct: 1143 RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202
Query: 79   DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
            D    K                               V+ AL   R      +T ++I H
Sbjct: 1203 DTESEKV------------------------------VQEALDKAREG----RTCIVIAH 1228
Query: 139  QIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS-GLDFTQL 176
            ++  + + D +++++ G V+  GT  QLLA  G+ F+ +
Sbjct: 1229 RLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 19   RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
            R  K   + +    LP    T VGDKG  LSGGQ+ RI++ARA+ ++  + LLD+  SA+
Sbjct: 1143 RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202
Query: 79   DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
            D    K                               V+ AL   R      +T ++I H
Sbjct: 1203 DTESEKV------------------------------VQEALDKAREG----RTCIVIAH 1228
Query: 139  QIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS-GLDFTQL 176
            ++  + + D +++++ G V+  GT  QLLA  G+ F+ +
Sbjct: 1229 RLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 37/161 (22%)
Query: 11  GHPDPNSRRVVKVCALKE--DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G P      VV+   +    DF   LP G  T VG++GV LSGGQ+ R+S+AR       
Sbjct: 438 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + +LD+  SA+D                            S    AL V           
Sbjct: 498 ILILDEATSALDLE------------------------SESIIQEALDVLS--------- 524
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
            K++T +++ H++  +TH D ++++E G +   GT  +L+A
Sbjct: 525 -KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 34/149 (22%)
Query: 28  EDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
           E    +P G  T++G+ G SLSGGQR R+++ARA+ + A V +LD+  SA+D        
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE------ 514
Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                                   S   ++ AL  ++    K KTV++I H++  +   D
Sbjct: 515 ------------------------SERAIQAALDELQ----KNKTVLVIAHRLSTIEQAD 546
Query: 148 HVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
            ++++++G +   G    LLA    + QL
Sbjct: 547 EILVVDEGEIIERGRHADLLAQDGAYAQL 575

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 40/152 (26%)
Query: 33  LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH----VGKHLFE 88
           LP G  T V + G  LSGGQR  ++LARA+ ++  V +LDD  SA+DA+    V + L+E
Sbjct: 140 LPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 199
Query: 89  DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
                          R+ RS                        V+LIT  +  +   DH
Sbjct: 200 S------------PERYSRS------------------------VLLITQHLSLVEQADH 223
Query: 149 VMLLEKGSVEAFGTTTQLLASGLDFTQLLDAP 180
           ++ LE G++   GT  QL+     +  ++ AP
Sbjct: 224 ILFLEGGAIREGGTHQQLMEKKGCYWAMVQAP 255

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 34/155 (21%)
Query: 31   AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90
            A+LP G  T VGD+G  LSGGQ+ RI++ARA+ +   + LLD+  SA+D    K      
Sbjct: 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKV----- 1255
Query: 91   ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVM 150
                                     V+ AL   R    + +T ++I H++  + + D + 
Sbjct: 1256 -------------------------VQEALDRAR----EGRTCIVIAHRLNTVMNADCIA 1286
Query: 151  LLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDK 185
            ++  G++   GT TQL++    + +L      E K
Sbjct: 1287 VVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTEKK 1321

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 40/142 (28%)
Query: 33  LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA----HVGKHLFE 88
            P G  T VG+ G  LSGGQR  ++LARA+ ++  + +LD   SA+DA     V + L+E
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYE 201
Query: 89  DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
                     P + SR                           TV+LITHQ+       H
Sbjct: 202 S---------PEWASR---------------------------TVLLITHQLSLAERAHH 225
Query: 149 VMLLEKGSVEAFGTTTQLLASG 170
           ++ L++GSV   GT  QL+  G
Sbjct: 226 ILFLKEGSVCEQGTHLQLMERG 247

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 37/171 (21%)
Query: 11  GHPDPNSRRVVKVCALKE--DFAQ-LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G  D     V+K     +  DF + LP    T+VG+KG+ LSGG+R RI++AR + K   
Sbjct: 116 GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175
Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + + D+  S++D+   ++LF+  +  L                                 
Sbjct: 176 IVIFDEATSSLDSKT-EYLFQKAVEDLR-------------------------------- 202
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD 178
            K +T+++I H++  ++  + ++LL KG +   GT   LL    ++ ++ +
Sbjct: 203 -KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 40/142 (28%)
Query: 33  LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA----HVGKHLFE 88
            P G  T VG+ G  LSGGQR  ++LARA+ ++  + +LD+  SA+DA     V + L+E
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 89  DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
                     P + SR                           TV+LIT Q+       H
Sbjct: 202 S---------PEWASR---------------------------TVLLITQQLSLAERAHH 225
Query: 149 VMLLEKGSVEAFGTTTQLLASG 170
           ++ L++GSV   GT  QL+  G
Sbjct: 226 ILFLKEGSVCEQGTHLQLMERG 247

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 4   ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
           I+  +   +P  +  +V+    L    DF ++L  G  T+VG++G  LSGGQR RI++AR
Sbjct: 93  IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 152
Query: 61  AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
           A+     + + D+  SA+D +  +H+    +  +H                         
Sbjct: 153 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 183
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
                   K +TV++I H++  + + D ++++EKG +   G   +LL+
Sbjct: 184 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 4   ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
           I+  +   +P  +  +V+    L    DF ++L  G  T+VG++G  LSGGQR RI++AR
Sbjct: 99  IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158
Query: 61  AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
           A+     + + D+  SA+D +  +H+    +  +H                         
Sbjct: 159 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 189
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
                   K +TV++I H++  + + D ++++EKG +   G   +LL+
Sbjct: 190 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 4   ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
           I+  +   +P  +  +V+    L    DF ++L  G  T+VG++G  LSGGQR RI++AR
Sbjct: 95  IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 154
Query: 61  AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
           A+     + + D+  SA+D +  +H+    +  +H                         
Sbjct: 155 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 185
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
                   K +TV++I H++  + + D ++++EKG +   G   +LL+
Sbjct: 186 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 4   ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
           I+  +   +P  +  +V+    L    DF ++L  G  T+VG++G  LSGGQR RI++AR
Sbjct: 95  IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 154
Query: 61  AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
           A+     + + D+  SA+D +  +H+    +  +H                         
Sbjct: 155 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 185
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
                   K +TV++I H++  + + D ++++EKG +   G   +LL+
Sbjct: 186 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 4   ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
           I+  +   +P  +  +V+    L    DF ++L  G  T+VG++G  LSGGQR RI++AR
Sbjct: 99  IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158
Query: 61  AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
           A+     + + D   SA+D +  +H+    +  +H                         
Sbjct: 159 ALVNNPKILIFDQATSALD-YESEHVI---MRNMH------------------------- 189
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
                   K +TV++I H++  + + D ++++EKG +   G   +LL+
Sbjct: 190 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 35/154 (22%)
Query: 24  CALKEDFA-QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
            A   DF  ++ +G  T++G+ GV LSGGQR RI++ARA+ + + + +LD+  SA+D   
Sbjct: 456 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE- 514
Query: 83  GKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY 142
                                        S   ++ AL  ++    K +T ++I H++  
Sbjct: 515 -----------------------------SERAIQAALDELQ----KNRTSLVIAHRLST 541
Query: 143 LTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
           +   D ++++E G +   GT ++LLA    + QL
Sbjct: 542 IEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Query: 12  HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLL 71
           + D +  +V+ +   +     +P    T VG++GV +SGGQR R+++ARA  +   + +L
Sbjct: 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163
Query: 72  DDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131
           D+  +++D+                               S   V+ AL     S +K +
Sbjct: 164 DEATASLDSE------------------------------SESMVQKALD----SLMKGR 189
Query: 132 TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169
           T ++I H++  +   D +  +EKG +   G   +L+A+
Sbjct: 190 TTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 40/142 (28%)
Query: 33  LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA----HVGKHLFE 88
            P G  T VG+ G  L+ GQR  ++LARA+ ++  + +LD+  SA+DA     V + L+E
Sbjct: 142 FPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 89  DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
                     P + SR                           TV+LIT Q+       H
Sbjct: 202 S---------PEWASR---------------------------TVLLITQQLSLAERAHH 225
Query: 149 VMLLEKGSVEAFGTTTQLLASG 170
           ++ L++GSV   GT  QL+  G
Sbjct: 226 ILFLKEGSVCEQGTHLQLMERG 247

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 37/169 (21%)
Query: 2   GPILAPMGPGHPDPNSRRVV---KVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISL 58
           G I   +  G  D     +V   K+  + +    LP G  + V   G + SGGQ+ R+S+
Sbjct: 431 GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490
Query: 59  ARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118
           ARA+ K+  V +LDD  S+VD    K + +        G+ R+                 
Sbjct: 491 ARALVKKPKVLILDDCTSSVDPITEKRILD--------GLKRYT---------------- 526
Query: 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167
                     K  T  +IT +I      D +++L +G V  FGT  +LL
Sbjct: 527 ----------KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 4   ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
           I+  +   +P  +  +V+    L    DF ++L  G  T+VG++G  LSGGQR RI++AR
Sbjct: 93  IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 152
Query: 61  AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
           A+     + + D+  SA+D +  +H+    +  +H                         
Sbjct: 153 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 183
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
                   K +TV++I  ++  + + D ++++EKG +   G   +LL+
Sbjct: 184 -----KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 226

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 4   ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
           I+  +   +P  +  +V+    L    DF ++L  G  T+VG++G  LSGGQR RI++AR
Sbjct: 99  IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158
Query: 61  AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
           A+     + + D+  SA+D +  +H+    +  +H                         
Sbjct: 159 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 189
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
                   K +TV++I  ++  + + D ++++EKG +   G   +LL+
Sbjct: 190 -----KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 232

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 33  LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92
            P G RT VG++G+ LSGG++ R+++AR + K   + LLD+  SA+D             
Sbjct: 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS----------- 224
Query: 93  GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152
                              +   ++ +L+ V       +T +++ H++  + + D ++++
Sbjct: 225 -------------------NERAIQASLAKV----CANRTTIVVAHRLSTVVNADQILVI 261
Query: 153 EKGSVEAFGTTTQLLASG---LDFTQLLDAPEE 182
           + G +   G    LL+ G    D  QL    EE
Sbjct: 262 KDGCIVERGRHEALLSRGGVYADMWQLQQGQEE 294

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 35/145 (24%)
Query: 24  CALKEDFA-QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
            A   DF  ++ +G  T++G+ GV LSGGQR RI++ARA+ + + + +LD+  SA+D   
Sbjct: 456 MAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE- 514
Query: 83  GKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY 142
                                        S   ++ AL  ++    K +T ++I H++  
Sbjct: 515 -----------------------------SERAIQAALDELQ----KNRTSLVIAHRLST 541
Query: 143 LTHVDHVMLLEKGSVEAFGTTTQLL 167
           +   D ++++E G +   GT   LL
Sbjct: 542 IEKADEIVVVEDGVIVERGTHNDLL 566

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 33/120 (27%)
Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R++LARA+  R  V L D+P +A+D  + + L    +  +H            
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL-RTFVRQVH------------ 192
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTTTQL 166
                 +GV               T + +TH Q + L   D V++L +G+VE FGT  ++
Sbjct: 193 ----DEMGV---------------TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 34/134 (25%)
Query: 37  DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
           D    G   V LSGGQ+ R+S+ARA+    DV L D+P SA+D                 
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP---------------- 186
Query: 97  GVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKG 155
                         G  L +   L+       + KT++++TH++ +  HV  HV+ L +G
Sbjct: 187 -----------ELVGEVLRIMQQLA------EEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
Query: 156 SVEAFGTTTQLLAS 169
            +E  G   Q+  +
Sbjct: 230 KIEEEGDPEQVFGN 243

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 34/121 (28%)
Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG++ R+++A  +    D+ +LD+PL  +D   GK           T + R   +W  
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE-GK-----------TDLLRIVEKW-- 184
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ-YLTHVDHVMLLEKGSVEAFGTTTQL 166
                 LG               KTV+LI+H I+  + HVD V++LEKG     GT  + 
Sbjct: 185 ----KTLG---------------KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
Query: 167 L 167
           L
Sbjct: 226 L 226

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 34/121 (28%)
Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG++ R+++A  +    D+ +LD+PL  +D   GK           T + R   +W  
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE-GK-----------TDLLRIVEKW-- 186
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ-YLTHVDHVMLLEKGSVEAFGTTTQL 166
                 LG               KTV+LI+H I+  + HVD V++LEKG     GT  + 
Sbjct: 187 ----KTLG---------------KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 227
Query: 167 L 167
           L
Sbjct: 228 L 228

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 33/128 (25%)
Query: 40  LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99
           L+  K   LSGGQR R++L RA+ +R  V+L D+PLS +DA +                 
Sbjct: 135 LLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKL----------------- 177
Query: 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVE 158
           R   R         LGV               T + +TH Q++  T  D + +  KG ++
Sbjct: 178 RVKXRAELKKLQRQLGV---------------TTIYVTHDQVEAXTXGDRIAVXNKGELQ 222
Query: 159 AFGTTTQL 166
             GT  ++
Sbjct: 223 QVGTPDEV 230

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 33/128 (25%)
Query: 40  LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99
           L+  K  +LSGGQR R+++ R +     V+LLD+PLS +DA +           +   + 
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR--------VQMRIEIS 177
Query: 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVE 158
           R   R GR                        T++ +TH Q++ +T  D +++L+ G V 
Sbjct: 178 RLHKRLGR------------------------TMIYVTHDQVEAMTLADKIVVLDAGRVA 213
Query: 159 AFGTTTQL 166
             G   +L
Sbjct: 214 QVGKPLEL 221

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 33/128 (25%)
Query: 40  LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99
           L+  K  +LSGGQR R+++ R +     V+LLD+PLS +DA +           +   + 
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR--------VQMRIEIS 177
Query: 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVE 158
           R   R GR                        T++ +TH Q++ +T  D +++L+ G V 
Sbjct: 178 RLHKRLGR------------------------TMIYVTHDQVEAMTLADKIVVLDAGRVA 213
Query: 159 AFGTTTQL 166
             G   +L
Sbjct: 214 QVGKPLEL 221

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 33/128 (25%)
Query: 40  LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99
           L+  K  +LSGGQR R+++ R +     V+LLD PLS +DA +           +   + 
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALR--------VQMRIEIS 177
Query: 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVE 158
           R   R GR                        T++ +TH Q++ +T  D +++L+ G V 
Sbjct: 178 RLHKRLGR------------------------TMIYVTHDQVEAMTLADKIVVLDAGRVA 213
Query: 159 AFGTTTQL 166
             G   +L
Sbjct: 214 QVGKPLEL 221

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 40  LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           L+  K   LSGGQR R++L RA+ ++  V+L+D+PLS +DA +
Sbjct: 132 LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 39  TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
            L+  K   LSGGQ+ R++LARA+ K+  V L D+PLS +DA++
Sbjct: 125 NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
            LSGGQR R+++ARA+    DV L+D+PLS +DA +
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 177

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
            LSGGQR R+++ARA+    DV L+D+PLS +DA +
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 176

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
            LSGGQ+ R+++ARA+ K  +V LLD+PLS +DA
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 40  LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90
           L+  K   LSGG+R R++LARA+  +  + LLD+PLSAVD      L E+ 
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 34/159 (21%)
Query: 9   GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
            PG  D   +   K+         LP G  T++ D G  LS GQR  +++ RA      +
Sbjct: 453 NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512
Query: 69  YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
            +LD+  S VD    K                               ++ A+       +
Sbjct: 513 LILDEATSNVDTKTEK------------------------------SIQAAMW----KLM 538
Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167
           + KT ++I H++  + + D +++L  G +   G   +L+
Sbjct: 539 EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELI 577

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 46  VSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
           ++LSGG++ R++LARA+     + LLD+PLSA+D
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	1e-73
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	3e-72
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	5e-72
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	9e-21
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-14
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	3e-17
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	4e-16
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-14
2ghi_A	260	Transport protein; multidrug resistance protein, M	3e-14
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	4e-14
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	4e-14
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	8e-14
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	9e-14
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-13
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-13
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	4e-11
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-10
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-08
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-09
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	7e-08
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	3e-09
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	4e-09
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	9e-09
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	6e-06
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	3e-08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-05
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	6e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	1e-07
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	3e-07
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	8e-07
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	8e-07
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-06
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	1e-06
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-06
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-06
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-06
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	3e-05
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	6e-05
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	7e-05
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-04
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	3e-04
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	5e-04

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score =  223 bits (571), Expect = 1e-73
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 33/178 (18%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           R V+K C L+ED ++    D  ++G+ G++LSGGQRARISLARAVYK AD+YLLD P   
Sbjct: 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           +D    K +FE C+  L                                 +  KT +L+T
Sbjct: 190 LDVLTEKEIFESCVCKL---------------------------------MANKTRILVT 216

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNAS 195
            ++++L   D +++L +GS   +GT ++L     DF+  L   +  D+   E  ++  
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSIL 274

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score =  218 bits (557), Expect = 3e-72
 Identities = 71/171 (41%), Positives = 94/171 (54%), Gaps = 31/171 (18%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           R V++ CAL  D   LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY  AD+YL DDPLSA
Sbjct: 98  RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 157

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           VDAHVGKH+FE+ I                       G +G         LK KT +L+T
Sbjct: 158 VDAHVGKHIFENVI-----------------------GPKGM--------LKNKTRILVT 186

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAEN 188
           H + YL  VD ++++  G +   G+  +LLA    F + L          +
Sbjct: 187 HSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHHHHH 237

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score =  217 bits (555), Expect = 5e-72
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 33/162 (20%)

Query: 18  RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
           R V+K C L+ED ++    D  ++G+ G++LSGGQRARISLARAVYK AD+YLLD P   
Sbjct: 101 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 160

Query: 78  VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
           +D    K +FE C+  L                                 +  KT +L+T
Sbjct: 161 LDVLTEKEIFESCVCKL---------------------------------MANKTRILVT 187

Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179
            ++++L   D +++L +GS   +GT ++L     DF+  L  
Sbjct: 188 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 88.6 bits (220), Expect = 9e-21
 Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 37/202 (18%)

Query: 11  GHPDPNSRRVVKVC--ALKEDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G  D     + K    A   DF  +LP    TLVG++G  LSGGQ+ RI++ARA+ +   
Sbjct: 487 GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + LLD+  SA+D                                S   V+ AL   R   
Sbjct: 547 ILLLDEATSALDTE------------------------------SEAVVQAALDKAR--- 573

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
            + +T ++I H++  + + D +   + G +   G   +L+     + +L+      ++ E
Sbjct: 574 -EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIE 632

Query: 188 NEVDDNASGTLLHPRQSSVRVS 209
              +   S   +     S + S
Sbjct: 633 LGNEACKSKDEIDNLDMSSKDS 654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 35/166 (21%)

Query: 29   DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
             F   LP    T VGDKG  LSGGQ+ RI++ARA+ ++  + LLD+  SA+D        
Sbjct: 1152 QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE------ 1205

Query: 88   EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                                    S   V+ AL   R    + +T ++I H++  + + D
Sbjct: 1206 ------------------------SEKVVQEALDKAR----EGRTCIVIAHRLSTIQNAD 1237

Query: 148  HVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDN 193
             +++++ G V+  GT  QLLA    +  ++       ++      +
Sbjct: 1238 LIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRSYVHHHHH 1283

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 78.4 bits (194), Expect = 3e-17
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 35/143 (24%)

Query: 28  EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
            DF   LP G  + V   G + SGGQ+ R+S+ARA+ K+  V +LDD  S+VD       
Sbjct: 459 HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI----- 513

Query: 87  FEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV 146
                T         + R           +   L      + K  T  +IT +I      
Sbjct: 514 -----T---------EKR-----------ILDGLK----RYTKGCTTFIITQKIPTALLA 544

Query: 147 DHVMLLEKGSVEAFGTTTQLLAS 169
           D +++L +G V  FGT  +LL  
Sbjct: 545 DKILVLHEGKVAGFGTHKELLEH 567

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 73.7 bits (182), Expect = 4e-16
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 33/166 (19%)

Query: 29  DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
           DF +  P G  T VG+ G  LSGGQR  ++LARA+ ++  + +LD+  SA+DA       
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG------ 190

Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                                   + L V+  L    +     +TV+LIT Q+       
Sbjct: 191 ------------------------NQLRVQRLLY--ESPEWASRTVLLITQQLSLAERAH 224

Query: 148 HVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDN 193
           H++ L++GSV   GT  QL+  G  +  +++A      A      +
Sbjct: 225 HILFLKEGSVCEQGTHLQLMERGGCYRSMVEALAAPSDAAAHHHHH 270

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 35/143 (24%)

Query: 29  DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
            F   +P    T VG++GV +SGGQR R+++ARA  +   + +LD+  +++D+       
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE------ 173

Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                                   S   V+ AL     S +K +T ++I H++  +   D
Sbjct: 174 ------------------------SESMVQKAL----DSLMKGRTTLVIAHRLSTIVDAD 205

Query: 148 HVMLLEKGSVEAFGTTTQLLASG 170
            +  +EKG +   G   +L+A+ 
Sbjct: 206 KIYFIEKGQITGSGKHNELVATH 228

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 68.4 bits (168), Expect = 3e-14
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 35/143 (24%)

Query: 29  DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
           DF   LP    T+VG+KG+ LSGG+R RI++AR + K   + + D+  S++D+       
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK------ 189

Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                                   +    + A+  +R    K +T+++I H++  ++  +
Sbjct: 190 ------------------------TEYLFQKAVEDLR----KNRTLIIIAHRLSTISSAE 221

Query: 148 HVMLLEKGSVEAFGTTTQLLASG 170
            ++LL KG +   GT   LL   
Sbjct: 222 SIILLNKGKIVEKGTHKDLLKLN 244

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 67.9 bits (167), Expect = 4e-14
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 35/141 (24%)

Query: 29  DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
           DF ++L  G  T+VG++G  LSGGQR RI++ARA+     + + D+  SA+D        
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE------ 179

Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                                   S   +   +  +     K +TV++I H++  + + D
Sbjct: 180 ------------------------SEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNAD 211

Query: 148 HVMLLEKGSVEAFGTTTQLLA 168
            ++++EKG +   G   +LL+
Sbjct: 212 RIIVMEKGKIVEQGKHKELLS 232

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 40/165 (24%)

Query: 11  GHPDPNSRRVVKVCALK----EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKR 65
              +  SR  +   A +     DF  ++ +G  T++G+ GV LSGGQR RI++ARA+ + 
Sbjct: 440 ARTEEYSREQI-EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498

Query: 66  ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT 125
           + + +LD+  SA+D    +                               ++ AL     
Sbjct: 499 SPILILDEATSALDTESERA------------------------------IQAAL----D 524

Query: 126 SFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
              K +T ++I H++  +   D ++++E G +   GT ++LLA  
Sbjct: 525 ELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 68.2 bits (167), Expect = 8e-14
 Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 39/196 (19%)

Query: 19  RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
           +V     L+    Q P     ++ D G  LS G +  + LAR+V  +A + LLD+P + +
Sbjct: 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL 186

Query: 79  DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
           D           I                               ++ +F  + TV+L   
Sbjct: 187 DPVT------YQII---------------------------RRTLKQAF-ADCTVILCEA 212

Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD-FTQLLDAPEEED----KAENEVDDN 193
           +I+ +   D  +++E+  V  + +  +L     D F        + +    K      D 
Sbjct: 213 RIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQ 272

Query: 194 ASGTLLHPRQSSVRVS 209
               L  P +  V + 
Sbjct: 273 VQVELPMPNRQQVWLP 288

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 67.6 bits (166), Expect = 9e-14
 Identities = 35/187 (18%), Positives = 75/187 (40%), Gaps = 37/187 (19%)

Query: 11  GHPDPNSRRVVKVC--ALKEDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
           G     +  V      A   D     P G RT VG++G+ LSGG++ R+++AR + K   
Sbjct: 151 GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPG 210

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           + LLD+  SA+D                                +   ++ +L+ V    
Sbjct: 211 IILLDEATSALDTS------------------------------NERAIQASLAKV---- 236

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
              +T +++ H++  + + D +++++ G +   G    LL+ G  +  +    + +++  
Sbjct: 237 CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETS 296

Query: 188 NEVDDNA 194
            +     
Sbjct: 297 EDTKPQT 303

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 35/143 (24%)

Query: 29  DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
           +F   +P G  T++G+ G SLSGGQR R+++ARA+ + A V +LD+  SA+D    +   
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA-- 518

Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
                                       ++ AL        K KTV++I H++  +   D
Sbjct: 519 ----------------------------IQAAL----DELQKNKTVLVIAHRLSTIEQAD 546

Query: 148 HVMLLEKGSVEAFGTTTQLLASG 170
            ++++++G +   G    LLA  
Sbjct: 547 EILVVDEGEIIERGRHADLLAQD 569

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 35/143 (24%)

Query: 29  DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
           DF   LP G  T VG++GV LSGGQ+ R+S+AR       + +LD+  SA+D      + 
Sbjct: 458 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517

Query: 88  EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
           E                        AL     LS  RT+        ++ H++  +TH D
Sbjct: 518 E------------------------AL---DVLSKDRTTL-------IVAHRLSTITHAD 543

Query: 148 HVMLLEKGSVEAFGTTTQLLASG 170
            ++++E G +   GT  +L+A  
Sbjct: 544 KIVVIENGHIVETGTHRELIAKQ 566

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 39/145 (26%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGG+  ++ +A  + K AD+Y+LD P S +D                           
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYI--------------------- 423

Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLE-KGSVEAFGT 162
                           ++    +E      +I H +    ++ D +++ + +       T
Sbjct: 424 ------------VAKAIK-RVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLAT 470

Query: 163 TTQLLASGL-DFTQLLDAPEEEDKA 186
           +   L +G+ +F + L+     D  
Sbjct: 471 SPVTLKTGMNEFLRELEVTFRRDAE 495

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 36/133 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG   R+ +A ++ + ADVY+ D P S +D                            
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE------------------------- 173

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                          +R   LK K V+++ H +  L ++ D + ++   S   +G  ++ 
Sbjct: 174 --------RMNMAKAIR-ELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV-YGRVSKS 223

Query: 167 LASGLDFTQLLDA 179
            A+ +     L  
Sbjct: 224 YAARVGINNFLKG 236

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 39/138 (28%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGG+  R+++  A+   AD+YL+D+P + +D+                          
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRII--------------------- 505

Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKG-SVEAFGT 162
                          ++R  F+    KT  ++ H     T++ D V++ E   S  A   
Sbjct: 506 ------------CSKVIR-RFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552

Query: 163 TTQLLASGLD-FTQLLDA 179
             + L +G + F + L+ 
Sbjct: 553 APESLLTGCNRFLKNLNV 570

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 39/135 (28%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG+  R ++  +  + ADVY+ D+P S +D     +                      
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNA--------------------- 260

Query: 108 SFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
                         ++R+  L    K V+ + H +  L ++ D V ++  G    +G  T
Sbjct: 261 ------------AQIIRS--LLAPTKYVICVEHDLSVLDYLSDFVCIIY-GVPSVYGVVT 305

Query: 165 QLLASGLDFTQLLDA 179
              +        LD 
Sbjct: 306 LPASVREGINIFLDG 320

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGG+R R++LARA+  +  + LLD+PLSAVD 
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDL 159

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 33/135 (24%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LS G++ R+ +ARA+  +  V +LD+P + +D    +      +  L            
Sbjct: 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI-ARESLLSILDSLSDS--------- 210

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ-YLTHVDHVMLLEKGSVEAFGTTTQ 165
                                     ++ +TH I+    +   ++LL+ G     G    
Sbjct: 211 ---------------------YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249

Query: 166 LLASGLDFTQLLDAP 180
           +L S  + ++     
Sbjct: 250 ILTS-ENMSRFFQKN 263

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
           LS GQ   +  + A+  + ++  LD+P   VDA     +  
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISR 169

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
           LSGGQ+ R++LARA+  R  V L D+P +A+D  + + L
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 39/144 (27%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGG+  R+++A  + + AD+YLLD+P + +D                           
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE------------------------- 505

Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLE-KGSVEAFGT 162
                     R A+S      +++  KT +++ H +  + +V D +++ E +        
Sbjct: 506 ---------QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 556

Query: 163 TTQLLASGLD-FTQLLDAPEEEDK 185
               +  G++ F   +      D 
Sbjct: 557 PPMGMREGMNRFLASVGITFRRDP 580

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 38/114 (33%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG+  R+++A A+ ++A  Y  D+P S +D                            
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ------------------------- 263

Query: 108 SFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKGSVE 158
                         ++R   L    K V+++ H +  L ++ D + ++      
Sbjct: 264 --------RLKVARVIR--RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGV 307

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGG++ R++LARA+     + LLD+PLSA+D 
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDP 160

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
            LSGG+  R+++A  + + AD+YLLD+P + +D   
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 38/114 (33%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG+  R+++A A+ + A  Y  D+P S +D                            
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ------------------------- 193

Query: 108 SFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKGSVE 158
                      A   +R   L E  K+V+++ H +  L ++ D + ++      
Sbjct: 194 --------RLNAARAIRR--LSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGV 237

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSG Q+ R++LARA+ K   + LLD+P S +DA
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
           LSGGQ+ R +LARA+    ++ LLD+P SA+D  +
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGGQ+ R+++ARA+ K  +V LLD+PLS +DA
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGGQR R+++ARA+    DV L+D+PLS +DA
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGGQ+ R++LARA+ K+  V L D+PLS +DA
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 36/123 (29%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           SLSGGQR  I +ARA+     + LLD+P SA+D                           
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALD--------------------------- 160

Query: 107 RSFFGSALGVRGALSLVRTSFLKE-KTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTT 164
                +   V   LSL+      +  TV+  THQ    +   +  +LL K +   FG T 
Sbjct: 161 ---LANQDIV---LSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF-KFGETR 213

Query: 165 QLL 167
            +L
Sbjct: 214 NIL 216

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 18/33 (54%), Positives = 27/33 (81%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGGQR R++L RA+ ++  V+L+D+PLS +DA
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGG++ R+++A  +    D+ +LD+PL  +D                           
Sbjct: 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLD-------------------RE------ 172

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQ 165
                   G    L +V       KTV+LI+H I+  + HVD V++LEKG     GT  +
Sbjct: 173 --------GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224

Query: 166 LLA 168
            L 
Sbjct: 225 FLE 227

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDP 74
           +LSGG + +++LARAV + AD+ LLD+P
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEP 575

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 37/116 (31%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQ+ ++ LA   ++R  + +LD+P +        +L  D +  L   +  F     
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTN--------YLDRDSLGALSKALKEF----- 947

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161
                                  E  V++ITH  ++  ++ + V  ++ G +   G
Sbjct: 948 -----------------------EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
           LSGGQR R+++ R +     V+LLD+PLS +DA
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 32  QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
            LP G  T++ D G  LS GQR  +++ RA      + +LD+  S VD
Sbjct: 476 HLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 34/135 (25%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LS GQ+ R+++A  +     V +LD+P + +D  +G       +  +             
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP-MGVSEIMKLLVEMQKE---------- 192

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQL 166
                                   T+++ TH I     + D+V ++++G V   G   ++
Sbjct: 193 ---------------------LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231

Query: 167 LASGLDFTQL-LDAP 180
            A      ++ L  P
Sbjct: 232 FAEKEVIRKVNLRLP 246

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 35/111 (31%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LS G   R+ LA  +   A++Y+LDDP+ A+D      + +                  
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK------------------ 174

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV 157
                           +     ++  V++ +   + L++ D    L K S 
Sbjct: 175 ---------------SILEILKEKGIVIISSR--EELSYCDVNENLHKYST 208

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 39/114 (34%)

Query: 48  LSGGQRARISLA------RAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRF 101
           LSGG+R  + LA        +     + +LD+P                   L       
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTP----------------YLDEE---- 288

Query: 102 DSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG 155
                          R  ++++     K   V+L++H  +     DHV+ +   
Sbjct: 289 -------------RRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE 329

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 44/129 (34%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           + S G   ++ +ARA+     + +LD+P S +D    + + +                  
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK------------------ 187

Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV----DHVMLLEKGSVEAF 160
                          +++     +   T+++ +H    +  V    D + L+  G++   
Sbjct: 188 ---------------ILKQ--ASQEGLTILVSSH---NMLEVEFLCDRIALIHNGTIVET 227

Query: 161 GTTTQLLAS 169
           GT  +L   
Sbjct: 228 GTVEELKER 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.97
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.97
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.96
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.96
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.96
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.96
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.95
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.95
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.95
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.94
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.94
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.94
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.94
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.94
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.94
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.92
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.92
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.92
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.92
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.92
1g6h_A	257	High-affinity branched-chain amino acid transport	99.91
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.91
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.91
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.91
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.91
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.91
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.91
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.91
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.91
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.91
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.9
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.9
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.9
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.9
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.9
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.9
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.9
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.9
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.9
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.9
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.89
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.86
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.85
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.85
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.83
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.82
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.82
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.82
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.81
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.81
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.81
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.81
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.8
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.8
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.79
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.79
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.78
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.78
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.78
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.77
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.77
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.77
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.76
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.74
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.73
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.67
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.66
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.64
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.64
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.63
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.6
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.58
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.5
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.48
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.47
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.45
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.37
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.33
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.02
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.82
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.76
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.71
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.69
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.65
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.62
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.59
2og2_A	359	Putative signal recognition particle receptor; nuc	98.58
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.54
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.45
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.44
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.44
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.42
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.39
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.36
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.36
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.35
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.35
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.32
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.32
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.31
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.28
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.23
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.13
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.07
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.92
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.83
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.72
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.72
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.45
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.27
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.22
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.17
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.13
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.01
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.99
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.91
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.88
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.88
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.53
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.47
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.08
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.02
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.81
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.81
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.24
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.22
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.18
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.1
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.91
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	94.65
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.59
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.48
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.16
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	93.81
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.53
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.07
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	91.4
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	91.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.0
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	90.97
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.28
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	88.89
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	88.6
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	88.25
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	87.14
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	84.75
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	82.81
1p9r_A	418	General secretion pathway protein E; bacterial typ	81.55

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.97  E-value=2.9e-33  Score=285.99  Aligned_cols=138  Identities=28%  Similarity=0.439  Sum_probs=116.2

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      +++++.++++++.|++++++..+|.||+|.||++|.+|||||||||+|||||+++|+|||||||||+||+++.+.+.+.+
T Consensus      1181 ~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l 1260 (1321)
T 4f4c_A         1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL 1260 (1321)
T ss_dssp             TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999988886643


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      .                                 + ..+++|+|+|+|+++.+..||+|+||++|+|+|+|+|++|++++
T Consensus      1261 ~---------------------------------~-~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A         1261 D---------------------------------R-AREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp             T---------------------------------T-TSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC
T ss_pred             H---------------------------------H-HcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            2                                 1 23689999999999999999999999999999999999999998


Q ss_pred             CCchhccCCCch
Q psy12535        171 LDFTQLLDAPEE  182 (209)
Q Consensus       171 ~~~~~~~~~~~~  182 (209)
                      +.|.++++.+..
T Consensus      1307 g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A         1307 GAYYKLTQKQMT 1318 (1321)
T ss_dssp             ------------
T ss_pred             cHHHHHHHHHHh
Confidence            899999987754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.97  E-value=1.1e-32  Score=281.87  Aligned_cols=137  Identities=29%  Similarity=0.463  Sum_probs=122.4

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ..+++++.++++.|++++++..+|+||+|.||++|.+|||||||||+||||++++|+|||||||||+||++++..+.+. 
T Consensus       518 ~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~-  596 (1321)
T 4f4c_A          518 GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQA-  596 (1321)
T ss_dssp             TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHH-
T ss_pred             cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHH-
Confidence            4566778888888999999999999999999999999999999999999999999999999999999999986655543 


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      +..                                 ..+++|+|+|||+++.+..||+|++|++|+|+++|+++||++.+
T Consensus       597 l~~---------------------------------~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~  643 (1321)
T 4f4c_A          597 LDK---------------------------------AAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQ  643 (1321)
T ss_dssp             HHH---------------------------------HHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred             HHH---------------------------------HhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhh
Confidence            221                                 23689999999999999999999999999999999999999998


Q ss_pred             CCchhccCCCc
Q psy12535        171 LDFTQLLDAPE  181 (209)
Q Consensus       171 ~~~~~~~~~~~  181 (209)
                      +.|.+++..+.
T Consensus       644 g~y~~l~~~q~  654 (1321)
T 4f4c_A          644 GLYYDLVTAQT  654 (1321)
T ss_dssp             CHHHHHHHHHH
T ss_pred             hHHHHHHHhhh
Confidence            88888876553

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.97  E-value=1.1e-32  Score=244.06  Aligned_cols=133  Identities=22%  Similarity=0.492  Sum_probs=117.7

Q ss_pred             CCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhc
Q psy12535         14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG   93 (209)
Q Consensus        14 ~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~   93 (209)
                      .+.+.++++.+++.+++..+|.|++|.+++++.+|||||||||+|||||+++|+|||||||||+||+.+...+++.+   
T Consensus       157 ~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l---  233 (306)
T 3nh6_A          157 NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL---  233 (306)
T ss_dssp             HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH---
Confidence            34456677888899999999999999999999999999999999999999999999999999999999988886632   


Q ss_pred             cccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCc
Q psy12535         94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDF  173 (209)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~  173 (209)
                                                    ... .+++|+|+|||+++.+..||+|++|++|+|++.|+++++++....|
T Consensus       234 ------------------------------~~l-~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y  282 (306)
T 3nh6_A          234 ------------------------------AKV-CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVY  282 (306)
T ss_dssp             ------------------------------HHH-HTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred             ------------------------------HHH-cCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence                                          222 2478999999999999889999999999999999999999888778


Q ss_pred             hhccCCC
Q psy12535        174 TQLLDAP  180 (209)
Q Consensus       174 ~~~~~~~  180 (209)
                      .++|..+
T Consensus       283 ~~l~~~q  289 (306)
T 3nh6_A          283 ADMWQLQ  289 (306)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877544

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.96  E-value=7.6e-31  Score=248.22  Aligned_cols=132  Identities=28%  Similarity=0.493  Sum_probs=116.1

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      ++..++++.+++++++..+|.|++|.+|++|.+|||||||||+|||||+++|++||||||||+||+.++..+.+.+    
T Consensus       445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l----  520 (578)
T 4a82_A          445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL----  520 (578)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHH----
T ss_pred             HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH----
Confidence            3455667777888999999999999999999999999999999999999999999999999999999887776532    


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCch
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT  174 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~  174 (209)
                                                   +.. .+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+..+.|.
T Consensus       521 -----------------------------~~~-~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~  570 (578)
T 4a82_A          521 -----------------------------DVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE  570 (578)
T ss_dssp             -----------------------------HHH-TTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHH
T ss_pred             -----------------------------HHH-cCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence                                         221 35789999999999998899999999999999999999998877788


Q ss_pred             hccCCC
Q psy12535        175 QLLDAP  180 (209)
Q Consensus       175 ~~~~~~  180 (209)
                      +++..+
T Consensus       571 ~~~~~q  576 (578)
T 4a82_A          571 HLYSIQ  576 (578)
T ss_dssp             HHHTTT
T ss_pred             HHHHhh
Confidence            777544

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=9.8e-31  Score=248.18  Aligned_cols=133  Identities=29%  Similarity=0.485  Sum_probs=117.3

Q ss_pred             CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535         13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT   92 (209)
Q Consensus        13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~   92 (209)
                      ++++..++++.+++++++..+|.|++|.+++++.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+  
T Consensus       445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l--  522 (587)
T 3qf4_A          445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL--  522 (587)
T ss_dssp             CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHH--
T ss_pred             CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH--
Confidence            334455677788899999999999999999999999999999999999999999999999999999999998887742  


Q ss_pred             ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCC
Q psy12535         93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD  172 (209)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~  172 (209)
                                                     ++. .+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+....
T Consensus       523 -------------------------------~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~  570 (587)
T 3qf4_A          523 -------------------------------KRY-TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKP  570 (587)
T ss_dssp             -------------------------------HHH-STTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHH
T ss_pred             -------------------------------HHh-CCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence                                           221 358999999999999988999999999999999999999988777


Q ss_pred             chhccCC
Q psy12535        173 FTQLLDA  179 (209)
Q Consensus       173 ~~~~~~~  179 (209)
                      |.+++..
T Consensus       571 ~~~~~~~  577 (587)
T 3qf4_A          571 YREIYES  577 (587)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=8.5e-31  Score=248.94  Aligned_cols=136  Identities=24%  Similarity=0.427  Sum_probs=120.0

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ..+++.+.++++.+++++++..+|.|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+
T Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l  534 (598)
T 3qf4_B          455 GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM  534 (598)
T ss_dssp             TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            34556677788888999999999999999999999999999999999999999999999999999999999988886632


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                                       ++. .+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+..
T Consensus       535 ---------------------------------~~~-~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~  580 (598)
T 3qf4_B          535 ---------------------------------WKL-MEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR  580 (598)
T ss_dssp             ---------------------------------HHH-HTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTT
T ss_pred             ---------------------------------HHH-cCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence                                             222 2589999999999999889999999999999999999999887


Q ss_pred             CCchhccCCC
Q psy12535        171 LDFTQLLDAP  180 (209)
Q Consensus       171 ~~~~~~~~~~  180 (209)
                      +.|.+++..+
T Consensus       581 ~~~~~~~~~~  590 (598)
T 3qf4_B          581 GFYYELFTSQ  590 (598)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            7777776543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.96  E-value=1.4e-30  Score=246.30  Aligned_cols=135  Identities=28%  Similarity=0.479  Sum_probs=118.4

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .+++++.++++.+++++++..+|+|++|.+|+++.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+ 
T Consensus       445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l-  523 (582)
T 3b5x_A          445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-  523 (582)
T ss_pred             CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH-
Confidence            3445566788889999999999999999999999999999999999999999999999999999999999988886632 


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                                      ++. .+++|+|+|||+++.+..||+|++|++|++++.|+++++.+...
T Consensus       524 --------------------------------~~~-~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~  570 (582)
T 3b5x_A          524 --------------------------------DEL-QKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG  570 (582)
T ss_pred             --------------------------------HHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence                                            222 24899999999999988899999999999999999999998777


Q ss_pred             CchhccCCC
Q psy12535        172 DFTQLLDAP  180 (209)
Q Consensus       172 ~~~~~~~~~  180 (209)
                      .|.+++..+
T Consensus       571 ~~~~~~~~q  579 (582)
T 3b5x_A          571 AYAQLHRIQ  579 (582)
T ss_pred             HHHHHHHHh
Confidence            777776543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.96  E-value=1.4e-30  Score=246.43  Aligned_cols=133  Identities=26%  Similarity=0.458  Sum_probs=117.3

Q ss_pred             CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535         13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT   92 (209)
Q Consensus        13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~   92 (209)
                      +++++.++++.+++++++..+|+|++|.+|+++.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+  
T Consensus       446 ~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l--  523 (582)
T 3b60_A          446 SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL--  523 (582)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHH--
T ss_pred             CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH--
Confidence            334556778888999999999999999999999999999999999999999999999999999999999988886632  


Q ss_pred             ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCC
Q psy12535         93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD  172 (209)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~  172 (209)
                                                     ++. .+++|+|+|||+++.+..||+|++|++|++++.|+++++.+....
T Consensus       524 -------------------------------~~~-~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~  571 (582)
T 3b60_A          524 -------------------------------DEL-QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV  571 (582)
T ss_dssp             -------------------------------HHH-HTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred             -------------------------------HHH-hCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCH
Confidence                                           222 248899999999999888999999999999999999999988777


Q ss_pred             chhccCC
Q psy12535        173 FTQLLDA  179 (209)
Q Consensus       173 ~~~~~~~  179 (209)
                      |.+++..
T Consensus       572 ~~~~~~~  578 (582)
T 3b60_A          572 YAQLHKM  578 (582)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.95  E-value=2.5e-29  Score=215.47  Aligned_cols=126  Identities=28%  Similarity=0.516  Sum_probs=107.9

Q ss_pred             cceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccC
Q psy12535         18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTG   97 (209)
Q Consensus        18 ~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~   97 (209)
                      .++++.+++.+++..+|.|+++.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+++.        
T Consensus       116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~--------  187 (247)
T 2ff7_A          116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--------  187 (247)
T ss_dssp             HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHH--------
T ss_pred             HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH--------
Confidence            345556678888899999999999999999999999999999999999999999999999999988888663        


Q ss_pred             CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc-cCCchhc
Q psy12535         98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS-GLDFTQL  176 (209)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~-~~~~~~~  176 (209)
                                               ++.. .+++|||+|||+++.+..||+|++|++|++++.|+++++... ...|.++
T Consensus       188 -------------------------l~~~-~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l  241 (247)
T 2ff7_A          188 -------------------------MHKI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL  241 (247)
T ss_dssp             -------------------------HHHH-HTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHH
T ss_pred             -------------------------HHHH-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHH
Confidence                                     2232 248899999999998877999999999999999999999765 3444444


Q ss_pred             c
Q psy12535        177 L  177 (209)
Q Consensus       177 ~  177 (209)
                      +
T Consensus       242 ~  242 (247)
T 2ff7_A          242 Y  242 (247)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.95  E-value=2.1e-29  Score=214.82  Aligned_cols=128  Identities=23%  Similarity=0.483  Sum_probs=108.7

Q ss_pred             CcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcccc
Q psy12535         17 SRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT   96 (209)
Q Consensus        17 ~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~   96 (209)
                      +.++++.+++.+++..+|.|+++.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.       
T Consensus       109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~-------  181 (243)
T 1mv5_A          109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA-------  181 (243)
T ss_dssp             HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHH-------
T ss_pred             HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH-------
Confidence            3445555677788899999999999999999999999999999999999999999999999999988888663       


Q ss_pred             CCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhc
Q psy12535         97 GVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL  176 (209)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~  176 (209)
                                                ++... +++|||++||+++.+..||+|++|++|++++.|+++++......+..+
T Consensus       182 --------------------------l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~  234 (243)
T 1mv5_A          182 --------------------------LDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY  234 (243)
T ss_dssp             --------------------------HHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHH
T ss_pred             --------------------------HHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHH
Confidence                                      33333 588999999999988779999999999999999999987654444444


Q ss_pred             cC
Q psy12535        177 LD  178 (209)
Q Consensus       177 ~~  178 (209)
                      +.
T Consensus       235 ~~  236 (243)
T 1mv5_A          235 VS  236 (243)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.95  E-value=7.7e-29  Score=213.87  Aligned_cols=125  Identities=28%  Similarity=0.514  Sum_probs=106.8

Q ss_pred             ceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCC
Q psy12535         19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGV   98 (209)
Q Consensus        19 ~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~   98 (209)
                      ++++.+++.+++..+|.+++|.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+++.         
T Consensus       127 ~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~---------  197 (260)
T 2ghi_A          127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA---------  197 (260)
T ss_dssp             HHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHH---------
T ss_pred             HHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH---------
Confidence            34455677777788999999999999999999999999999999999999999999999999988777663         


Q ss_pred             CCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhcc
Q psy12535         99 PRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL  177 (209)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~  177 (209)
                                              +.... +++|||+|||+++.+..||+|++|++|++++.|+++++......|..++
T Consensus       198 ------------------------l~~l~-~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~  251 (260)
T 2ghi_A          198 ------------------------VEDLR-KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMW  251 (260)
T ss_dssp             ------------------------HHHHT-TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred             ------------------------HHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHH
Confidence                                    22322 4789999999999887899999999999999999999987655555554

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.94  E-value=8.2e-29  Score=210.90  Aligned_cols=130  Identities=53%  Similarity=0.910  Sum_probs=107.1

Q ss_pred             cceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccC
Q psy12535         18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTG   97 (209)
Q Consensus        18 ~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~   97 (209)
                      .++++.+++.+.+..+|.|++|.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+++.+...    
T Consensus        98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~----  173 (237)
T 2cbz_A           98 RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP----  173 (237)
T ss_dssp             HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTST----
T ss_pred             HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH----
Confidence            3444555566667778889999999999999999999999999999999999999999999999888887643210    


Q ss_pred             CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhcc
Q psy12535         98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL  177 (209)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~  177 (209)
                                                .. ..+++|||+|||+++.+..||+|++|++|++++.|+++++......|..++
T Consensus       174 --------------------------~~-~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~  226 (237)
T 2cbz_A          174 --------------------------KG-MLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL  226 (237)
T ss_dssp             --------------------------TS-TTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred             --------------------------Hh-hcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHH
Confidence                                      01 124789999999999887799999999999999999999987665565554


Q ss_pred             C
Q psy12535        178 D  178 (209)
Q Consensus       178 ~  178 (209)
                      .
T Consensus       227 ~  227 (237)
T 2cbz_A          227 R  227 (237)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.94  E-value=4.5e-29  Score=254.60  Aligned_cols=134  Identities=30%  Similarity=0.470  Sum_probs=118.1

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      +.+.++++.+++++++..+|.||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+...+.+.+    
T Consensus      1139 ~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l---- 1214 (1284)
T 3g5u_A         1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL---- 1214 (1284)
T ss_dssp             HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHH----
T ss_pred             HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH----
Confidence            3445567777889999999999999999999999999999999999999999999999999999999888776632    


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCch
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT  174 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~  174 (209)
                                                   +. ..+|+|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.
T Consensus      1215 -----------------------------~~-~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~ 1264 (1284)
T 3g5u_A         1215 -----------------------------DK-AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYF 1264 (1284)
T ss_dssp             -----------------------------HH-HSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHH
T ss_pred             -----------------------------HH-hCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHH
Confidence                                         22 235899999999999998899999999999999999999999988888


Q ss_pred             hccCCCch
Q psy12535        175 QLLDAPEE  182 (209)
Q Consensus       175 ~~~~~~~~  182 (209)
                      +++..+..
T Consensus      1265 ~l~~~q~~ 1272 (1284)
T 3g5u_A         1265 SMVSVQAG 1272 (1284)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            88865543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.94  E-value=2.2e-28  Score=207.03  Aligned_cols=122  Identities=43%  Similarity=0.774  Sum_probs=102.4

Q ss_pred             eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535         20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP   99 (209)
Q Consensus        20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~   99 (209)
                      +++.+++.+.+..+|.+++|.+++++.+|||||||||+|||||+.+|++|||||||++||+.+...+++.++..      
T Consensus       103 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~------  176 (229)
T 2pze_A          103 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK------  176 (229)
T ss_dssp             HHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCC------
T ss_pred             HHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHH------
Confidence            34445667778888989999999999999999999999999999999999999999999999888887643211      


Q ss_pred             CccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCch
Q psy12535        100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT  174 (209)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~  174 (209)
                                                 ..+++|||++||+++.+..||+|++|++|++++.|+++++......+.
T Consensus       177 ---------------------------~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~  224 (229)
T 2pze_A          177 ---------------------------LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS  224 (229)
T ss_dssp             ---------------------------CTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHH
T ss_pred             ---------------------------hhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence                                       124789999999999887799999999999999999999876544443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.94  E-value=4e-28  Score=210.67  Aligned_cols=124  Identities=32%  Similarity=0.467  Sum_probs=105.7

Q ss_pred             eechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccc
Q psy12535         24 CALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS  103 (209)
Q Consensus        24 ~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
                      .++.+++..+|.|+++.+++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.+             
T Consensus       133 ~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l-------------  199 (271)
T 2ixe_A          133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL-------------  199 (271)
T ss_dssp             HTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH-------------
T ss_pred             HhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH-------------
Confidence            4556678888889999999999999999999999999999999999999999999999888886632             


Q ss_pred             cchhhhhcccccccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhccCCC
Q psy12535        104 RWGRSFFGSALGVRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAP  180 (209)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~~~  180 (209)
                                          ..... .++|||+|||+++.+..||+|++|++|++++.|+++++......|..++...
T Consensus       200 --------------------~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  257 (271)
T 2ixe_A          200 --------------------YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEAL  257 (271)
T ss_dssp             --------------------HHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHC-
T ss_pred             --------------------HHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHHHHh
Confidence                                22222 3889999999999887799999999999999999999987766666665443

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.94  E-value=6.9e-28  Score=219.69  Aligned_cols=122  Identities=22%  Similarity=0.355  Sum_probs=107.4

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      +++.++++.+++.+.+.+.|.+++|.+++.+.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+    
T Consensus       123 ~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l----  198 (390)
T 3gd7_A          123 QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL----  198 (390)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHH----
T ss_pred             HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH----
Confidence            3445667778888899999999999999999999999999999999999999999999999999999888876632    


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                                   +. ...++|+|+|||+++.+..||+|++|++|+|++.|+++++....
T Consensus       199 -----------------------------~~-~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p  244 (390)
T 3gd7_A          199 -----------------------------KQ-AFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP  244 (390)
T ss_dssp             -----------------------------HT-TTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred             -----------------------------HH-HhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence                                         22 12478999999999988889999999999999999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.94  E-value=2.9e-28  Score=248.70  Aligned_cols=131  Identities=25%  Similarity=0.394  Sum_probs=114.2

Q ss_pred             CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535         13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT   92 (209)
Q Consensus        13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~   92 (209)
                      +++.+.++++.+++++++..+|.|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+...+.+.+  
T Consensus       492 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l--  569 (1284)
T 3g5u_A          492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL--  569 (1284)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHH--
T ss_pred             CHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH--
Confidence            344556677778889999999999999999999999999999999999999999999999999999998877665422  


Q ss_pred             ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCC
Q psy12535         93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD  172 (209)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~  172 (209)
                                                     +. ..+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+..+.
T Consensus       570 -------------------------------~~-~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~  617 (1284)
T 3g5u_A          570 -------------------------------DK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGI  617 (1284)
T ss_dssp             -------------------------------HH-HHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSH
T ss_pred             -------------------------------HH-HcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCH
Confidence                                           11 2358999999999999999999999999999999999999987766


Q ss_pred             chhcc
Q psy12535        173 FTQLL  177 (209)
Q Consensus       173 ~~~~~  177 (209)
                      |.+++
T Consensus       618 ~~~~~  622 (1284)
T 3g5u_A          618 YFKLV  622 (1284)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.92  E-value=2.5e-26  Score=200.26  Aligned_cols=101  Identities=23%  Similarity=0.342  Sum_probs=86.9

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                          
T Consensus       132 ~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~--------------------------  185 (275)
T 3gfo_A          132 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL--------------------------  185 (275)
T ss_dssp             TCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH--------------------------
T ss_pred             CCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH--------------------------
Confidence            444555677789999999999999999999999999999999999988888763                          


Q ss_pred             ccchhhhhhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             +++.. .+|+|||+|||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus       186 -------l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  234 (275)
T 3gfo_A          186 -------LVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  234 (275)
T ss_dssp             -------HHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred             -------HHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence                   33333 348999999999999864 899999999999999999998764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.92  E-value=6.9e-27  Score=211.71  Aligned_cols=101  Identities=25%  Similarity=0.361  Sum_probs=86.3

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+|||||||||+|||||+.+|+|||||||||+||+.+...+++.                           
T Consensus       153 L~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~l---------------------------  205 (366)
T 3tui_C          153 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL---------------------------  205 (366)
T ss_dssp             CGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHH---------------------------
T ss_pred             CchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH---------------------------
Confidence            33344556679999999999999999999999999999999999988888763                           


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                            +++... .|+|||+|||+++.+.. ||+|++|++|+|++.|++++++.+.
T Consensus       206 ------L~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p  255 (366)
T 3tui_C          206 ------LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP  255 (366)
T ss_dssp             ------HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred             ------HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence                  333333 38999999999999865 8999999999999999999998754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.92  E-value=1.1e-26  Score=203.92  Aligned_cols=116  Identities=42%  Similarity=0.776  Sum_probs=95.9

Q ss_pred             eeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCC
Q psy12535         21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR  100 (209)
Q Consensus        21 ~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~  100 (209)
                      ++.+++.+.+..+|.++++.+++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.++..       
T Consensus       133 ~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~-------  205 (290)
T 2bbs_A          133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK-------  205 (290)
T ss_dssp             HHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCC-------
T ss_pred             HHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHH-------
Confidence            3445666677888888999999999999999999999999999999999999999999999888886632211       


Q ss_pred             ccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535        101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                                                ..+++|||+|||+++.+..||+|++|++|++++.|+++++...
T Consensus       206 --------------------------~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  248 (290)
T 2bbs_A          206 --------------------------LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL  248 (290)
T ss_dssp             --------------------------CTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             --------------------------hhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence                                      1247899999999998877999999999999999999998753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.92  E-value=8.8e-27  Score=210.49  Aligned_cols=103  Identities=27%  Similarity=0.442  Sum_probs=86.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+++.+...                      
T Consensus       127 gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~----------------------  184 (359)
T 3fvq_A          127 GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA----------------------  184 (359)
T ss_dssp             TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH----------------------
T ss_pred             CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH----------------------
Confidence            3444555667799999999999999999999999999999999999888886643221                      


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                                ....|+|+|+|||+++.+. .||||++|++|+|++.|+++++..+.
T Consensus       185 ----------~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p  230 (359)
T 3fvq_A          185 ----------LRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP  230 (359)
T ss_dssp             ----------HHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             ----------HHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence                      1234889999999999875 58999999999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.92  E-value=3.2e-26  Score=194.62  Aligned_cols=93  Identities=28%  Similarity=0.428  Sum_probs=79.1

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                                
T Consensus       140 ~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~--------------------------------  187 (235)
T 3tif_A          140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL--------------------------------  187 (235)
T ss_dssp             TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH--------------------------------
T ss_pred             hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------------
Confidence            567789999999999999999999999999999999999988888763                                


Q ss_pred             hhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535        122 LVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       122 ~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                       +++... .|+|||+|||+++.+..||+|++|++|++++.++.+++.
T Consensus       188 -l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~  233 (235)
T 3tif_A          188 -LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD  233 (235)
T ss_dssp             -HHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred             -HHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence             333333 389999999999976678999999999999999887753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.91  E-value=9e-26  Score=194.01  Aligned_cols=97  Identities=24%  Similarity=0.408  Sum_probs=84.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++....+.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                          
T Consensus       142 ~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~--------------------------  195 (257)
T 1g6h_A          142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH--------------------------  195 (257)
T ss_dssp             TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred             CCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence            455566778889999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhH
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQ  165 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~  165 (209)
                             +++...+|+|||+|||+++.+. .||+|++|++|++++.|++++
T Consensus       196 -------l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          196 -------VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             -------HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             -------HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence                   3333334899999999999876 589999999999999999988

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.91  E-value=8.6e-26  Score=194.96  Aligned_cols=101  Identities=32%  Similarity=0.511  Sum_probs=86.7

Q ss_pred             CCcee-ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      |+... ....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                         
T Consensus       141 ~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~-------------------------  195 (262)
T 1b0u_A          141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-------------------------  195 (262)
T ss_dssp             TCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-------------------------
T ss_pred             CCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-------------------------
Confidence            44445 5677889999999999999999999999999999999999988888663                         


Q ss_pred             cccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        115 GVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                              ++....+|+|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus       196 --------l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  243 (262)
T 1b0u_A          196 --------MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN  243 (262)
T ss_dssp             --------HHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             --------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence                    3333334889999999999886 5899999999999999999998764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.91  E-value=1.5e-25  Score=194.12  Aligned_cols=101  Identities=25%  Similarity=0.401  Sum_probs=86.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       148 ~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~--------------------------  201 (263)
T 2olj_A          148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV--------------------------  201 (263)
T ss_dssp             TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH--------------------------
T ss_pred             CCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            444556677889999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             +++...+++|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus       202 -------l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  249 (263)
T 2olj_A          202 -------MKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR  249 (263)
T ss_dssp             -------HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             -------HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence                   3333334889999999999986 5899999999999999999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=8.3e-26  Score=192.46  Aligned_cols=99  Identities=20%  Similarity=0.339  Sum_probs=84.9

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +....++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                           
T Consensus       129 l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~---------------------------  181 (240)
T 1ji0_A          129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV---------------------------  181 (240)
T ss_dssp             HHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH---------------------------
T ss_pred             HhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH---------------------------
Confidence            44456677889999999999999999999999999999999999988888663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                            ++....+++|||+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus       182 ------l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          182 ------IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             ------HHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             ------HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence                  2333335889999999998765 589999999999999999998864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.91  E-value=1.8e-25  Score=203.27  Aligned_cols=102  Identities=27%  Similarity=0.425  Sum_probs=86.9

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+++.+                         
T Consensus       122 ~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l-------------------------  176 (381)
T 3rlf_A          122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI-------------------------  176 (381)
T ss_dssp             TCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHH-------------------------
T ss_pred             CCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH-------------------------
Confidence            3444556777899999999999999999999999999999999999888887643                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              ++... .|+|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus       177 --------~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p  225 (381)
T 3rlf_A          177 --------SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP  225 (381)
T ss_dssp             --------HHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             --------HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence                    22222 3899999999999875 58999999999999999999998654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.91  E-value=1.5e-25  Score=194.04  Aligned_cols=97  Identities=29%  Similarity=0.424  Sum_probs=83.4

Q ss_pred             eecccceecCCccchhhhhHHHHhh------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccc
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYK------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSA  113 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (209)
                      .....+.+|||||||||+|||||+.      +|+||||||||+|||+.+...+++.                        
T Consensus       134 ~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~------------------------  189 (266)
T 4g1u_C          134 LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL------------------------  189 (266)
T ss_dssp             TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHH------------------------
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHH------------------------
Confidence            3456677999999999999999999      9999999999999999988888763                        


Q ss_pred             ccccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        114 LGVRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       114 ~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                               +++...+ ++|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus       190 ---------l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~  238 (266)
T 4g1u_C          190 ---------LRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA  238 (266)
T ss_dssp             ---------HHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred             ---------HHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence                     3333333 579999999999986 5899999999999999999998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.91  E-value=5.7e-26  Score=205.89  Aligned_cols=102  Identities=26%  Similarity=0.404  Sum_probs=85.7

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+                         
T Consensus       130 ~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l-------------------------  184 (372)
T 1v43_A          130 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI-------------------------  184 (372)
T ss_dssp             TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH-------------------------
T ss_pred             CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-------------------------
Confidence            3344455566799999999999999999999999999999999999888887633                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              ++... .+.|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus       185 --------~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p  233 (372)
T 1v43_A          185 --------KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP  233 (372)
T ss_dssp             --------HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             --------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence                    22222 3789999999999875 58999999999999999999997653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.91  E-value=1.7e-25  Score=191.14  Aligned_cols=102  Identities=31%  Similarity=0.469  Sum_probs=86.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.                          
T Consensus       115 ~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~--------------------------  168 (240)
T 2onk_A          115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE--------------------------  168 (240)
T ss_dssp             TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHH--------------------------
T ss_pred             CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            344445667789999999999999999999999999999999999988888763                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                             ++.... .++|||++||+++.+. .||+|++|++|++++.|+++++....
T Consensus       169 -------l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  218 (240)
T 2onk_A          169 -------LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             -------HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence                   223222 3789999999999875 58999999999999999999987643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.91  E-value=2e-25  Score=188.28  Aligned_cols=94  Identities=20%  Similarity=0.300  Sum_probs=80.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.                          
T Consensus       129 ~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~--------------------------  182 (224)
T 2pcj_A          129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI--------------------------  182 (224)
T ss_dssp             TCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred             CCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH--------------------------
Confidence            344455677889999999999999999999999999999999999988888763                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~  162 (209)
                             +++...+++|||+|||+++.+..||+|++|++|++++.|+
T Consensus       183 -------l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          183 -------FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             -------HHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             -------HHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence                   3333334889999999999876789999999999999886

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.91  E-value=4.3e-26  Score=205.82  Aligned_cols=102  Identities=27%  Similarity=0.404  Sum_probs=86.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+                         
T Consensus       122 ~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l-------------------------  176 (359)
T 2yyz_A          122 LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI-------------------------  176 (359)
T ss_dssp             TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH-------------------------
T ss_pred             CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-------------------------
Confidence            3444556667799999999999999999999999999999999999888886633                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              ++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus       177 --------~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p  225 (359)
T 2yyz_A          177 --------KHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP  225 (359)
T ss_dssp             --------HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             --------HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence                    22222 3789999999999875 58999999999999999999998654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=3.7e-25  Score=190.80  Aligned_cols=101  Identities=20%  Similarity=0.338  Sum_probs=86.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                          
T Consensus       135 gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~--------------------------  188 (256)
T 1vpl_A          135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI--------------------------  188 (256)
T ss_dssp             CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred             CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH--------------------------
Confidence            444455667789999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                             +++...+++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       189 -------l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  236 (256)
T 1vpl_A          189 -------LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER  236 (256)
T ss_dssp             -------HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             -------HHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence                   33333358899999999999875 899999999999999999998653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.90  E-value=4.8e-25  Score=190.51  Aligned_cols=99  Identities=31%  Similarity=0.460  Sum_probs=84.7

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                             
T Consensus       130 ~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~-----------------------------  180 (266)
T 2yz2_A          130 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI-----------------------------  180 (266)
T ss_dssp             HHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-----------------------------
T ss_pred             ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHH-----------------------------
Confidence            334555679999999999999999999999999999999999988888763                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                          ++....+++|||+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus       181 ----l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  229 (266)
T 2yz2_A          181 ----VEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY  229 (266)
T ss_dssp             ----HHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred             ----HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence                33333348899999999999875 8999999999999999999987653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.90  E-value=5.6e-25  Score=197.98  Aligned_cols=102  Identities=25%  Similarity=0.342  Sum_probs=86.2

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+                         
T Consensus       129 ~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l-------------------------  183 (353)
T 1oxx_K          129 DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV-------------------------  183 (353)
T ss_dssp             TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH-------------------------
T ss_pred             CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH-------------------------
Confidence            3444556677899999999999999999999999999999999999888887633                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              ++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++..+.
T Consensus       184 --------~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p  232 (353)
T 1oxx_K          184 --------KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP  232 (353)
T ss_dssp             --------HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence                    22222 3789999999999875 58999999999999999999997653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.90  E-value=5.7e-25  Score=198.70  Aligned_cols=102  Identities=26%  Similarity=0.371  Sum_probs=86.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+                         
T Consensus       122 ~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l-------------------------  176 (362)
T 2it1_A          122 HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAEL-------------------------  176 (362)
T ss_dssp             TCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHH-------------------------
T ss_pred             CCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH-------------------------
Confidence            3444556677899999999999999999999999999999999999888887633                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              ++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus       177 --------~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p  225 (362)
T 2it1_A          177 --------KRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP  225 (362)
T ss_dssp             --------HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             --------HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence                    22222 3789999999999865 58999999999999999999997653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.90  E-value=5.2e-25  Score=192.03  Aligned_cols=100  Identities=24%  Similarity=0.357  Sum_probs=85.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                          
T Consensus       150 gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~--------------------------  203 (279)
T 2ihy_A          150 GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSI--------------------------  203 (279)
T ss_dssp             TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred             CChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHH--------------------------
Confidence            444556677889999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhcccccee--eeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLKEKTV--MLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~Ti--IvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                             +++...+++||  |+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus       204 -------l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  252 (279)
T 2ihy_A          204 -------LDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT  252 (279)
T ss_dssp             -------HHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred             -------HHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence                   23333347899  99999999875 589999999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.90  E-value=5.4e-25  Score=198.44  Aligned_cols=102  Identities=30%  Similarity=0.456  Sum_probs=86.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+                         
T Consensus       134 gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l-------------------------  188 (355)
T 1z47_A          134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV-------------------------  188 (355)
T ss_dssp             TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH-------------------------
T ss_pred             CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence            4444556677899999999999999999999999999999999999888886632                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              ++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus       189 --------~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p  237 (355)
T 1z47_A          189 --------RQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP  237 (355)
T ss_dssp             --------HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             --------HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence                    22222 3789999999999875 58999999999999999999997653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.90  E-value=6.9e-25  Score=198.68  Aligned_cols=102  Identities=26%  Similarity=0.462  Sum_probs=86.4

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+                         
T Consensus       128 ~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l-------------------------  182 (372)
T 1g29_1          128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL-------------------------  182 (372)
T ss_dssp             TCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH-------------------------
T ss_pred             CCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH-------------------------
Confidence            3444556677899999999999999999999999999999999999888886633                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                              ++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus       183 --------~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p  231 (372)
T 1g29_1          183 --------KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP  231 (372)
T ss_dssp             --------HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             --------HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCc
Confidence                    22222 3789999999999875 58999999999999999999997653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.90  E-value=1.6e-24  Score=185.59  Aligned_cols=93  Identities=22%  Similarity=0.211  Sum_probs=75.5

Q ss_pred             eeccccee-cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         40 LVGDKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        40 ~vg~~g~~-LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      .....+.+ |||||||||+|||||+.+|+||||||||++||+.+...+++.                             
T Consensus       135 ~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~-----------------------------  185 (250)
T 2d2e_A          135 YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARG-----------------------------  185 (250)
T ss_dssp             GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHH-----------------------------
T ss_pred             HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH-----------------------------
Confidence            34555667 999999999999999999999999999999999988888663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecc--cceEEEeeccceeecchhhH
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQ  165 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~  165 (209)
                          ++....+++|||+|||+++.+..  ||+|++|++|++++.|+++.
T Consensus       186 ----l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          186 ----VNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             ----HHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             ----HHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence                33333358899999999998875  49999999999999998873

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.90  E-value=1.2e-24  Score=188.32  Aligned_cols=94  Identities=20%  Similarity=0.260  Sum_probs=80.4

Q ss_pred             cccce-ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         42 GDKGV-SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        42 g~~g~-~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ..... +|||||||||+|||||+.+|+||||||||++||+.+...+++.                               
T Consensus       158 ~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~-------------------------------  206 (267)
T 2zu0_C          158 TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG-------------------------------  206 (267)
T ss_dssp             TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH-------------------------------
T ss_pred             cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-------------------------------
Confidence            44444 5999999999999999999999999999999999988888663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecc--cceEEEeeccceeecchhhHHhh
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                        ++....+++|||+|||+++.+..  ||+|++|++|++++.|+++++..
T Consensus       207 --l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  254 (267)
T 2zu0_C          207 --VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ  254 (267)
T ss_dssp             --HHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred             --HHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence              33333458999999999998864  79999999999999999988753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.90  E-value=5.9e-25  Score=197.61  Aligned_cols=101  Identities=27%  Similarity=0.413  Sum_probs=85.5

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.....+++.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+                          
T Consensus       117 L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l--------------------------  170 (348)
T 3d31_A          117 IEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML--------------------------  170 (348)
T ss_dssp             CTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH--------------------------
T ss_pred             CchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH--------------------------
Confidence            344456677899999999999999999999999999999999999888887633                          


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                             ++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus       171 -------~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p  219 (348)
T 3d31_A          171 -------SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP  219 (348)
T ss_dssp             -------HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred             -------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence                   22222 3889999999999865 58999999999999999999997653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.90  E-value=9.6e-25  Score=187.68  Aligned_cols=99  Identities=31%  Similarity=0.376  Sum_probs=84.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                          
T Consensus       117 ~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~--------------------------  170 (253)
T 2nq2_C          117 NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL--------------------------  170 (253)
T ss_dssp             TCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHH--------------------------
T ss_pred             CChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            444455667889999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                             +.....+ ++|||++||+++.+. .||+|++|++|+ ++.|+++++..
T Consensus       171 -------l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~  217 (253)
T 2nq2_C          171 -------LIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT  217 (253)
T ss_dssp             -------HHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred             -------HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence                   2233333 889999999999885 589999999999 99999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.90  E-value=1.2e-24  Score=186.92  Aligned_cols=100  Identities=23%  Similarity=0.351  Sum_probs=85.8

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcc-------eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRAD-------VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS  108 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~-------illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (209)
                      |+...+...+.+|||||||||+|||||+.+|+       +|||||||++||+.+...+.+.                   
T Consensus       115 ~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~-------------------  175 (249)
T 2qi9_C          115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI-------------------  175 (249)
T ss_dssp             TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHH-------------------
T ss_pred             CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHH-------------------
Confidence            44455567788999999999999999999999       9999999999999988888663                   


Q ss_pred             hhcccccccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535        109 FFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                                    ++....+++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       176 --------------l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          176 --------------LSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  222 (249)
T ss_dssp             --------------HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred             --------------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence                          3333334889999999999985 589999999999999999998864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.89  E-value=5.8e-24  Score=184.13  Aligned_cols=98  Identities=20%  Similarity=0.241  Sum_probs=85.1

Q ss_pred             CCc-eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         36 GDR-TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        36 g~~-t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      |++ ...+.++.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+                        
T Consensus       116 gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L------------------------  171 (263)
T 2pjz_A          116 KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI------------------------  171 (263)
T ss_dssp             TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH------------------------
T ss_pred             CCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH------------------------
Confidence            555 6677888999999999999999999999999999999999999888886632                        


Q ss_pred             cccchhhhhhhhccccceeeeeeeehheec-ccc-eEEEeeccceeecchhhHHhhc
Q psy12535        115 GVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVD-HVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~D-rV~~L~~G~i~~~G~~~~l~~~  169 (209)
                               +...  . |||++||+++.+. .|| +|++|++|++++.|+++++...
T Consensus       172 ---------~~~~--~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~  216 (263)
T 2pjz_A          172 ---------KEYG--K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES  216 (263)
T ss_dssp             ---------HHSC--S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred             ---------HHhc--C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence                     2221  2 9999999999875 589 9999999999999999999754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.86  E-value=9e-23  Score=195.66  Aligned_cols=101  Identities=24%  Similarity=0.437  Sum_probs=86.3

Q ss_pred             eecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ..++.+.+|||||||||+|||||+.+|   +||||||||+|||+.+...+++.                           
T Consensus       536 ~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~---------------------------  588 (670)
T 3ux8_A          536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDV---------------------------  588 (670)
T ss_dssp             BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHH---------------------------
T ss_pred             hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHH---------------------------
Confidence            346778899999999999999999886   59999999999999988888763                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCc
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDF  173 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~  173 (209)
                            +++...+|+|||+|||+++.+..||+|++|      ++|+|++.|+++++.+....+
T Consensus       589 ------l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~  645 (670)
T 3ux8_A          589 ------LHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESH  645 (670)
T ss_dssp             ------HHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTCH
T ss_pred             ------HHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCccH
Confidence                  333334589999999999988889999999      899999999999997654443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.85  E-value=1.9e-22  Score=193.34  Aligned_cols=98  Identities=22%  Similarity=0.364  Sum_probs=85.1

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcc--eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRAD--VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~--illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ....+.+|||||||||+|||||+.+|+  ||||||||++||+.+...+++.                             
T Consensus       196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~-----------------------------  246 (670)
T 3ux8_A          196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIAT-----------------------------  246 (670)
T ss_dssp             TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHH-----------------------------
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHH-----------------------------
Confidence            356678999999999999999999998  9999999999999988888663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccC
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~  171 (209)
                          ++....+|+|||+|||+++.+..||+|++|      ++|++++.|+++++..+..
T Consensus       247 ----l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~  301 (670)
T 3ux8_A          247 ----LKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN  301 (670)
T ss_dssp             ----HHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred             ----HHHHHHcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence                333334589999999999988789999999      8999999999999986543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.85  E-value=1.9e-22  Score=200.19  Aligned_cols=103  Identities=29%  Similarity=0.490  Sum_probs=89.0

Q ss_pred             eecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      .+++.+.+|||||||||+|||||+++|   +||||||||+|||+.+...+.+.                           
T Consensus       798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~l---------------------------  850 (916)
T 3pih_A          798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEV---------------------------  850 (916)
T ss_dssp             BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHH---------------------------
T ss_pred             hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------
Confidence            357888999999999999999999875   79999999999999988888663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCchh
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDFTQ  175 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~~~  175 (209)
                            +.++..+|+|||+|||+++.+..||+|++|      ++|+|++.|+++++.++...|..
T Consensus       851 ------L~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~  909 (916)
T 3pih_A          851 ------LHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTG  909 (916)
T ss_dssp             ------HHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHH
T ss_pred             ------HHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHH
Confidence                  333334589999999999999889999999      89999999999999987655543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.83  E-value=5.2e-22  Score=189.78  Aligned_cols=98  Identities=23%  Similarity=0.362  Sum_probs=83.9

Q ss_pred             eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ......+.+|||||||||+|||||+.+|+||||||||+|||+.+...+++.                             
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~l-----------------------------  509 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV-----------------------------  509 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHH-----------------------------
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH-----------------------------
Confidence            345567789999999999999999999999999999999999988877663                             


Q ss_pred             hhhhhhhhc-cccceeeeeeeehheecc-cceEEEeec--cceeecchhhHHhhc
Q psy12535        119 ALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEK--GSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~--G~i~~~G~~~~l~~~  169 (209)
                          ++... ..|+|||+||||++.+.. ||||++|++  |+++..|++++++..
T Consensus       510 ----l~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          510 ----IRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             ----HHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred             ----HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence                22322 248899999999999865 899999987  899999999998765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.82  E-value=9.6e-22  Score=165.48  Aligned_cols=87  Identities=20%  Similarity=0.302  Sum_probs=70.1

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++.. +..+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.                          
T Consensus       123 gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~--------------------------  175 (214)
T 1sgw_A          123 EVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS--------------------------  175 (214)
T ss_dssp             TCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHH--------------------------
T ss_pred             CCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH--------------------------
Confidence            45555 778889999999999999999999999999999999999988888663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV  157 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i  157 (209)
                             +.....+++|||++||+++.+.. +|+|+++ .|+|
T Consensus       176 -------l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          176 -------ILEILKEKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             -------HHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             -------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence                   22323347899999999999876 5776654 5665

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.82  E-value=4.3e-21  Score=172.50  Aligned_cols=85  Identities=25%  Similarity=0.384  Sum_probs=73.1

Q ss_pred             cccceecCCccchhhhhHHHHh------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         42 GDKGVSLSGGQRARISLARAVY------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      +..+.+|||||||||+|||||+      .+|++|||||||++||+.+...+++.                          
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~--------------------------  327 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASV--------------------------  327 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHH--------------------------
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHH--------------------------
Confidence            4567789999999999999999      79999999999999999988887663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceee
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEA  159 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~  159 (209)
                             ++.....|+|||+|||+++.+..+|+|++|++|++++
T Consensus       328 -------l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          328 -------LKELERLNKVIVFITHDREFSEAFDRKLRITGGVVVN  364 (365)
T ss_dssp             -------HHGGGGSSSEEEEEESCHHHHTTCSCEEEEETTEEC-
T ss_pred             -------HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence                   2333345899999999999877799999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.82  E-value=2.7e-21  Score=182.17  Aligned_cols=100  Identities=25%  Similarity=0.400  Sum_probs=84.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.                          
T Consensus       390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~--------------------------  443 (538)
T 1yqt_A          390 GIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA--------------------------  443 (538)
T ss_dssp             TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH--------------------------
T ss_pred             CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence            455566778889999999999999999999999999999999999988888763                          


Q ss_pred             ccchhhhhhhhc-cccceeeeeeeehheec-ccceEEEeec--cceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSF-LKEKTVMLITHQIQYLT-HVDHVMLLEK--GSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~-~~DrV~~L~~--G~i~~~G~~~~l~~  168 (209)
                             +++.. ..++|||+|||+++.+. .||+|++|++  |++...|+++++..
T Consensus       444 -------l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          444 -------IRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             -------HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             -------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence                   22222 24889999999999986 4899999986  78888899988765

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.81  E-value=9.9e-21  Score=187.95  Aligned_cols=97  Identities=25%  Similarity=0.424  Sum_probs=85.5

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcc--eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRAD--VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~--illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      .++...+|||||+|||+|||||+.+|+  +|||||||++||+.....+++.                             
T Consensus       458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~-----------------------------  508 (916)
T 3pih_A          458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKT-----------------------------  508 (916)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHH-----------------------------
T ss_pred             ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHH-----------------------------
Confidence            467788999999999999999999887  9999999999999988888663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhcc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~  170 (209)
                          ++.+...|+|||+|||+++.+..||+|++|      ++|+|++.|+++++..+.
T Consensus       509 ----L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~  562 (916)
T 3pih_A          509 ----LKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP  562 (916)
T ss_dssp             ----HHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred             ----HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence                333344689999999999998889999999      899999999999998653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.81  E-value=5e-21  Score=180.51  Aligned_cols=98  Identities=19%  Similarity=0.322  Sum_probs=78.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.                          
T Consensus       374 ~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~--------------------------  427 (538)
T 3ozx_A          374 NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKA--------------------------  427 (538)
T ss_dssp             TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred             CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence            445556677889999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeec--cceeecchhhHH
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEK--GSVEAFGTTTQL  166 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~--G~i~~~G~~~~l  166 (209)
                             +++... .++|||+|||+++.+.. ||||++|++  |.+...+++.++
T Consensus       428 -------l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~  475 (538)
T 3ozx_A          428 -------IKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL  475 (538)
T ss_dssp             -------HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             -------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence                   223222 47899999999999875 899999987  444445554443

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.81  E-value=1.6e-20  Score=149.94  Aligned_cols=79  Identities=24%  Similarity=0.351  Sum_probs=65.5

Q ss_pred             cccceecCCccchhhhhH------HHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         42 GDKGVSLSGGQRARISLA------RAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiA------Ral~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      ...+.+||||||||++||      |||+.+|+++||||||++||+.....+.+.                          
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------  105 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI--------------------------  105 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHH--------------------------
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHH--------------------------
Confidence            355679999999999876      899999999999999999999888777663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE  153 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~  153 (209)
                             +......++|||+|||+++....+|+|++|+
T Consensus       106 -------l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~  136 (148)
T 1f2t_B          106 -------MERYLKKIPQVILVSHDEELKDAADHVIRIS  136 (148)
T ss_dssp             -------HHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred             -------HHHHHccCCEEEEEEChHHHHHhCCEEEEEE
Confidence                   2232335789999999996556689999994

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.81  E-value=5.8e-21  Score=182.43  Aligned_cols=100  Identities=24%  Similarity=0.390  Sum_probs=83.7

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.                          
T Consensus       460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~--------------------------  513 (607)
T 3bk7_A          460 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA--------------------------  513 (607)
T ss_dssp             TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH--------------------------
T ss_pred             CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence            344455677889999999999999999999999999999999999988887663                          


Q ss_pred             ccchhhhhhhhc-cccceeeeeeeehheecc-cceEEEeec--cceeecchhhHHhh
Q psy12535        116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEK--GSVEAFGTTTQLLA  168 (209)
Q Consensus       116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~--G~i~~~G~~~~l~~  168 (209)
                             ++... ..++|||+|||+++.+.. ||+|++|++  |++...|+++++..
T Consensus       514 -------l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          514 -------IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             -------HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             -------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence                   22322 248899999999999875 899999986  78888899988875

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.80  E-value=1.4e-20  Score=187.13  Aligned_cols=105  Identities=24%  Similarity=0.419  Sum_probs=88.6

Q ss_pred             CCce-eecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535         36 GDRT-LVGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG  111 (209)
Q Consensus        36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (209)
                      |+.. .++..+.+|||||||||+|||+|+.+|   +||||||||+|||+.....+++.                      
T Consensus       833 gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~l----------------------  890 (972)
T 2r6f_A          833 GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDV----------------------  890 (972)
T ss_dssp             TCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHH----------------------
T ss_pred             CCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHH----------------------
Confidence            3444 567888999999999999999999875   99999999999999988887663                      


Q ss_pred             ccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCc
Q psy12535        112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDF  173 (209)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~  173 (209)
                                 +..+..+|+|||+|||+++.+..||+|++|      ++|+|++.|+++++......+
T Consensus       891 -----------L~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~~  947 (972)
T 2r6f_A          891 -----------LHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESH  947 (972)
T ss_dssp             -----------HHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTCH
T ss_pred             -----------HHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchhH
Confidence                       333334589999999999998789999999      789999999999998765444

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.80  E-value=1.1e-20  Score=186.25  Aligned_cols=99  Identities=25%  Similarity=0.405  Sum_probs=86.0

Q ss_pred             eecccceecCCccchhhhhHHHHhhh---cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKR---ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~---p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      .++..+.+|||||||||+|||+|+.+   |+||||||||+|||+.....+.+.                           
T Consensus       723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~l---------------------------  775 (842)
T 2vf7_A          723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQ---------------------------  775 (842)
T ss_dssp             BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHH---------------------------
T ss_pred             cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------
Confidence            35788899999999999999999996   799999999999999988887663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccC
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~  171 (209)
                            ++.+...|+|||+|||+++.+..||+|++|      ++|+|++.|+++++.....
T Consensus       776 ------L~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~  830 (842)
T 2vf7_A          776 ------LVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAG  830 (842)
T ss_dssp             ------HHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred             ------HHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCch
Confidence                  333334689999999999999779999999      7999999999999986543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.79  E-value=2e-20  Score=176.19  Aligned_cols=87  Identities=22%  Similarity=0.344  Sum_probs=72.7

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.........+|||||||||+|||||+.+|+||||||||++||+.....+++.                           
T Consensus       148 l~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~---------------------------  200 (538)
T 1yqt_A          148 LENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARA---------------------------  200 (538)
T ss_dssp             CTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH---------------------------
T ss_pred             CChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH---------------------------
Confidence            33445667789999999999999999999999999999999999988887663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccc
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGS  156 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~  156 (209)
                            ++.....|+|||+|||+++.+.. ||+|++|++|.
T Consensus       201 ------L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~  235 (538)
T 1yqt_A          201 ------IRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP  235 (538)
T ss_dssp             ------HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             ------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence                  33333358899999999998865 89999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.78  E-value=4e-20  Score=176.63  Aligned_cols=88  Identities=22%  Similarity=0.349  Sum_probs=73.2

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.........+|||||||||+|||||+.+|+||||||||++||+.+...+++.                          
T Consensus       217 gL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~--------------------------  270 (607)
T 3bk7_A          217 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV--------------------------  270 (607)
T ss_dssp             TCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHH--------------------------
T ss_pred             CCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH--------------------------
Confidence            344455677889999999999999999999999999999999999988877663                          


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGS  156 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~  156 (209)
                             ++.....|+|||+|||+++.+.. +|+|++|+++.
T Consensus       271 -------L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~  305 (607)
T 3bk7_A          271 -------IRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP  305 (607)
T ss_dssp             -------HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             -------HHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCc
Confidence                   33333358899999999998765 79999998653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.78  E-value=5.5e-20  Score=182.94  Aligned_cols=96  Identities=23%  Similarity=0.377  Sum_probs=84.3

Q ss_pred             ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      +++...+|||||+|||+||++|..+|  +||||||||++||+.....+++.                             
T Consensus       498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~-----------------------------  548 (972)
T 2r6f_A          498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIAT-----------------------------  548 (972)
T ss_dssp             SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHH-----------------------------
T ss_pred             cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHH-----------------------------
Confidence            56778899999999999999999985  99999999999999888877663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~  169 (209)
                          ++.+...|+|||+|+|+++.+..||+|++|      ++|++++.|+++++...
T Consensus       549 ----L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~  601 (972)
T 2r6f_A          549 ----LKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND  601 (972)
T ss_dssp             ----HHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred             ----HHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence                333344689999999999998889999999      79999999999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.78  E-value=5.8e-20  Score=175.61  Aligned_cols=90  Identities=22%  Similarity=0.338  Sum_probs=75.2

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |++........+|||||||||+|||||+.+|+|||||||||+||+.....+++                           
T Consensus       210 gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~---------------------------  262 (608)
T 3j16_B          210 QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ---------------------------  262 (608)
T ss_dssp             TCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH---------------------------
T ss_pred             CCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHH---------------------------
Confidence            34445566778999999999999999999999999999999999988877766                           


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeecccee
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE  158 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~  158 (209)
                            +++.+..+|+|||+|||+++.+.. +|+|++|++|...
T Consensus       263 ------~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~  300 (608)
T 3j16_B          263 ------IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV  300 (608)
T ss_dssp             ------HHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred             ------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence                  333334468899999999999875 8999999887654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.77  E-value=5.6e-20  Score=173.36  Aligned_cols=87  Identities=26%  Similarity=0.405  Sum_probs=72.9

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.........+|||||||||+|||||+.+|+|||||||||+||+.....+++                            
T Consensus       128 l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~----------------------------  179 (538)
T 3ozx_A          128 MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK----------------------------  179 (538)
T ss_dssp             CGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH----------------------------
T ss_pred             CchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH----------------------------
Confidence            3444566778999999999999999999999999999999999998877766                            


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV  157 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i  157 (209)
                           +++.+. +++|||+|||+++.+.. ||+|++|++|..
T Consensus       180 -----~l~~l~-~g~tii~vsHdl~~~~~~~d~i~vl~~~~~  215 (538)
T 3ozx_A          180 -----AIRELL-KNKYVIVVDHDLIVLDYLTDLIHIIYGESS  215 (538)
T ss_dssp             -----HHHHHC-TTSEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred             -----HHHHHh-CCCEEEEEEeChHHHHhhCCEEEEecCCcc
Confidence                 333333 38999999999998865 799999987654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.77  E-value=9.4e-20  Score=181.85  Aligned_cols=94  Identities=27%  Similarity=0.383  Sum_probs=81.4

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .......+||||||||++|||||+.+|+||||||||++||+.+...+.+.                              
T Consensus       541 ~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~------------------------------  590 (986)
T 2iw3_A          541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY------------------------------  590 (986)
T ss_dssp             HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHH------------------------------
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH------------------------------
Confidence            44567789999999999999999999999999999999999888777652                              


Q ss_pred             hhhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~~  169 (209)
                         ++.   .+.|||+|||+++.+.. ||+|++|++|+++ ..|+++++...
T Consensus       591 ---L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~  636 (986)
T 2iw3_A          591 ---LNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK  636 (986)
T ss_dssp             ---HHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred             ---HHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence               323   47899999999999865 8999999999997 68999988653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.76  E-value=1.4e-19  Score=178.32  Aligned_cols=101  Identities=20%  Similarity=0.328  Sum_probs=86.5

Q ss_pred             CCcee-ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535         36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS  112 (209)
Q Consensus        36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (209)
                      |+..+ +++...+|||||+|||+||++|+.+|  .||||||||++||+.....+++.                       
T Consensus       367 GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~-----------------------  423 (842)
T 2vf7_A          367 GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSA-----------------------  423 (842)
T ss_dssp             TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHH-----------------------
T ss_pred             CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHH-----------------------
Confidence            44433 57788899999999999999999999  49999999999999888877663                       


Q ss_pred             cccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhc
Q psy12535        113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~  169 (209)
                                ++.+...|+|||+|+|+++.+..||+|++|      ++|++++.|+++++.+.
T Consensus       424 ----------l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~  476 (842)
T 2vf7_A          424 ----------LENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV  476 (842)
T ss_dssp             ----------HHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred             ----------HHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence                      333344689999999999988889999999      79999999999998765

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.74  E-value=7.7e-19  Score=157.60  Aligned_cols=79  Identities=20%  Similarity=0.283  Sum_probs=69.5

Q ss_pred             cCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535         48 LSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT  125 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (209)
                      |||||||||+|||+|+.+|  +||||||||++||+.+...+.+.                                 ++.
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~---------------------------------L~~  342 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ---------------------------------LSR  342 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHH---------------------------------HHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------------HHH
Confidence            7999999999999999999  99999999999999988888663                                 333


Q ss_pred             hccccceeeeeeeehheecccceEEEe----eccceeec
Q psy12535        126 SFLKEKTVMLITHQIQYLTHVDHVMLL----EKGSVEAF  160 (209)
Q Consensus       126 ~~~~~~TiIvitH~l~~l~~~DrV~~L----~~G~i~~~  160 (209)
                      .. +++|||+|||+++.+..||++++|    ++|+++..
T Consensus       343 l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~~~~~  380 (415)
T 4aby_A          343 LA-DTRQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVSH  380 (415)
T ss_dssp             HT-TTSEEEEECSCHHHHTTCSEEEEEEEEEETTEEEEE
T ss_pred             Hh-CCCEEEEEeCcHHHHhhcCeEEEEEEeccCCceEEE
Confidence            33 588999999999888889999999    99988754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.73  E-value=5.4e-19  Score=176.39  Aligned_cols=85  Identities=25%  Similarity=0.429  Sum_probs=71.3

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.                                
T Consensus       896 ~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~--------------------------------  943 (986)
T 2iw3_A          896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKA--------------------------------  943 (986)
T ss_dssp             HSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHH--------------------------------
T ss_pred             CCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH--------------------------------
Confidence            556789999999999999999999999999999999999887766553                                


Q ss_pred             hhhhhccccceeeeeeeehheec-ccceEEEeeccceeecch
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~  162 (209)
                       ++.   .+.|||+|||+++++. .||+|++|++|+++..|+
T Consensus       944 -L~~---~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          944 -LKE---FEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             -HHS---CSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             -HHH---hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence             222   2569999999999986 589999999999988774

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.67  E-value=2.9e-17  Score=144.37  Aligned_cols=82  Identities=24%  Similarity=0.316  Sum_probs=67.0

Q ss_pred             ccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         43 DKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      ..+..||+|||||++|||||+    .+|+||||||||++||+.....+++.                             
T Consensus       215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~-----------------------------  265 (322)
T 1e69_A          215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRL-----------------------------  265 (322)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHH-----------------------------
T ss_pred             CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHH-----------------------------
Confidence            356799999999999999997    57899999999999999888777663                             


Q ss_pred             hhhhhhhhccccceeeeeeeehheecccceE--EEeecccee
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHV--MLLEKGSVE  158 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV--~~L~~G~i~  158 (209)
                          ++.. .+++|+|+|||+.+.+..||++  ++|.+|...
T Consensus       266 ----l~~~-~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~  302 (322)
T 1e69_A          266 ----LKEN-SKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA  302 (322)
T ss_dssp             ----HHHH-TTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred             ----HHHh-cCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence                2232 2478999999998777778986  788887553

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.66  E-value=2.5e-17  Score=153.50  Aligned_cols=78  Identities=21%  Similarity=0.259  Sum_probs=66.8

Q ss_pred             cceec-CCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         44 KGVSL-SGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        44 ~g~~L-SgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....| ||||+|||+|||||+.+|  ++|||||||+|||+.+...+.+.                               
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~-------------------------------  441 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ-------------------------------  441 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHH-------------------------------
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHH-------------------------------
Confidence            34577 999999999999999999  99999999999999988877663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecccceEEEeecc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG  155 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G  155 (209)
                        ++... +++|||+|||+++.+..||++++|.++
T Consensus       442 --l~~~~-~~~~vi~itH~~~~~~~~d~~~~~~~~  473 (517)
T 4ad8_A          442 --LSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQ  473 (517)
T ss_dssp             --HHHHH-HHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred             --HHHHh-CCCEEEEEecCHHHHHhCCEEEEEecc
Confidence              23323 378999999999988889999999655

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.64  E-value=6.8e-17  Score=143.08  Aligned_cols=78  Identities=23%  Similarity=0.373  Sum_probs=64.4

Q ss_pred             ccceecCCccch------hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         43 DKGVSLSGGQRA------RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        43 ~~g~~LSgGqrQ------RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      .....|||||||      |+++||+++.+|++|||||||++||+.....+++.                           
T Consensus       244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~---------------------------  296 (339)
T 3qkt_A          244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI---------------------------  296 (339)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHH---------------------------
T ss_pred             CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------
Confidence            456789999999      67788888899999999999999999888877663                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE  153 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~  153 (209)
                            +......++|||+|||+.+....||+|++|+
T Consensus       297 ------l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~  327 (339)
T 3qkt_A          297 ------MERYLKKIPQVILVSHDEELKDAADHVIRIS  327 (339)
T ss_dssp             ------HHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred             ------HHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence                  2222335789999999987767789999996

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.64  E-value=8.3e-17  Score=131.47  Aligned_cols=80  Identities=24%  Similarity=0.307  Sum_probs=64.6

Q ss_pred             ccceecCCccchhhhhHHHHhhh----cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         43 DKGVSLSGGQRARISLARAVYKR----ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~----p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      .....||||||||++|||+++.+    |+++||||||++||+.+...+.+.+                            
T Consensus        60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l----------------------------  111 (173)
T 3kta_B           60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLI----------------------------  111 (173)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH----------------------------
T ss_pred             cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHH----------------------------
Confidence            34578999999999999999865    5999999999999999888876632                            


Q ss_pred             hhhhhhhhccccceeeeeeeehheecccceEEEe--eccc
Q psy12535        119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL--EKGS  156 (209)
Q Consensus       119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L--~~G~  156 (209)
                           +.. .++.++|+|||+...+..||+++.+  .+|.
T Consensus       112 -----~~~-~~~~~~ivith~~~~~~~ad~i~~v~~~~g~  145 (173)
T 3kta_B          112 -----KES-SKESQFIVITLRDVMMANADKIIGVSMRDGV  145 (173)
T ss_dssp             -----HHH-TTTSEEEEECSCHHHHTTCSEEEEEEEETTE
T ss_pred             -----HHh-ccCCEEEEEEecHHHHHhCCEEEEEEecCCE
Confidence                 222 2356899999998888889999865  4554

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.63  E-value=5.6e-17  Score=146.14  Aligned_cols=85  Identities=16%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             ccce-ecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535         43 DKGV-SLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS  112 (209)
Q Consensus        43 ~~g~-~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (209)
                      ..+. .||||||||++||++|+         .+|+|||||||||+||+.....+++.+                      
T Consensus       260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l----------------------  317 (359)
T 2o5v_A          260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLA----------------------  317 (359)
T ss_dssp             EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHH----------------------
T ss_pred             cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHH----------------------
Confidence            3445 69999999999999999         899999999999999999888887632                      


Q ss_pred             cccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535        113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l  166 (209)
                                 ...   ..|+|++|| ++.  .+|+|++|++|+|+..|+++++
T Consensus       318 -----------~~~---~qt~i~~th-~~~--~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          318 -----------ASV---PQAIVTGTE-LAP--GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             -----------HHS---SEEEEEESS-CCT--TCSEEEEEETTEEEECCCTTTS
T ss_pred             -----------Hhc---CcEEEEEEe-ccc--cCCEEEEEECCEEEecCCHHHH
Confidence                       221   269999999 343  7899999999999999998876

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.4e-16  Score=147.69  Aligned_cols=85  Identities=11%  Similarity=0.094  Sum_probs=69.6

Q ss_pred             ceecCCccchhhhhHHH--Hhhhcce----eeccC-cchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         45 GVSLSGGQRARISLARA--VYKRADV----YLLDD-PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        45 g~~LSgGqrQRlaiARa--l~~~p~i----llLDE-Pts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      +.+|||||||||+||||  |+.+|++    ||||| ||++||+. ...+.+                             
T Consensus       233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~-----------------------------  282 (460)
T 2npi_A          233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHH-----------------------------  282 (460)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHH-----------------------------
T ss_pred             hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHH-----------------------------
Confidence            56999999999999999  9999999    99999 99999997 332222                             


Q ss_pred             chhhhhhhhccccceeeeeeeehh------eec-ccce-----EEEee-ccceeecchhhHHh
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQ------YLT-HVDH-----VMLLE-KGSVEAFGTTTQLL  167 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~------~l~-~~Dr-----V~~L~-~G~i~~~G~~~~l~  167 (209)
                          +++.   .+.|+|+|||+.+      .+. .+|+     |++|+ +|+|+ .|+++++.
T Consensus       283 ----l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~  337 (460)
T 2npi_A          283 ----IIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR  337 (460)
T ss_dssp             ----HHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred             ----HHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence                1111   2679999999887      444 4799     99999 99999 89888774

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.58  E-value=3.4e-16  Score=125.58  Aligned_cols=97  Identities=8%  Similarity=-0.024  Sum_probs=63.2

Q ss_pred             CCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535         35 SGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL  114 (209)
Q Consensus        35 ~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (209)
                      .|+.+.+... ...|+|||||++||||++.+|++|+|||||++||+.++..+-..                 .+...-..
T Consensus        72 ~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~-----------------~~~~vi~~  133 (171)
T 4gp7_A           72 LGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQ-----------------VEEYVIRK  133 (171)
T ss_dssp             TTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCC-----------------CCHHHHHH
T ss_pred             CCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCC-----------------CCHHHHHH
Confidence            3555555443 35699999999999999999999999999999999855332000                 00000000


Q ss_pred             cccchhhhhhhhccccceeeeeeeehheecccceE
Q psy12535        115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHV  149 (209)
Q Consensus       115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV  149 (209)
                      .+..+.++++....+|.|+|+|||+++.+..++++
T Consensus       134 ~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~  168 (171)
T 4gp7_A          134 HTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE  168 (171)
T ss_dssp             HHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred             HHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence            11122234444444689999999999988766553

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.50  E-value=7.7e-15  Score=133.44  Aligned_cols=77  Identities=17%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             ceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         45 GVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      +..||||||||++||++|+    .+|+++||||||++||+.....+.+.                               
T Consensus       331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~-------------------------------  379 (430)
T 1w1w_A          331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-------------------------------  379 (430)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-------------------------------
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHH-------------------------------
Confidence            4569999999999999999    47999999999999999888777663                               


Q ss_pred             hhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                        +.....++.++|+|||+...+..||++++|..
T Consensus       380 --l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~  411 (430)
T 1w1w_A          380 --IRRHRNPDLQFIVISLKNTMFEKSDALVGVYR  411 (430)
T ss_dssp             --HHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred             --HHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence              22222346799999999887778999999964

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.48  E-value=4.7e-15  Score=120.76  Aligned_cols=50  Identities=18%  Similarity=0.264  Sum_probs=44.8

Q ss_pred             eeecccceecCCccchhhhhHHH-----HhhhcceeeccC--cchhhhhhhhhhhhh
Q psy12535         39 TLVGDKGVSLSGGQRARISLARA-----VYKRADVYLLDD--PLSAVDAHVGKHLFE   88 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiARa-----l~~~p~illLDE--Pts~LD~~~~~~~~~   88 (209)
                      ..+++.+.+||||||||++||||     ++.+|+++||||  ||++||+...+.+.+
T Consensus        68 ~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~  124 (178)
T 1ye8_A           68 KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ  124 (178)
T ss_dssp             SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred             ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence            46788889999999999999996     999999999999  999999987766655

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.47  E-value=2.1e-14  Score=128.45  Aligned_cols=76  Identities=24%  Similarity=0.340  Sum_probs=61.9

Q ss_pred             ceecCCccchhh------hhHHHHhhh-cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         45 GVSLSGGQRARI------SLARAVYKR-ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        45 g~~LSgGqrQRl------aiARal~~~-p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      ...|||||+||+      ++||+++.+ |++|||||||++||+.....+.+.+                           
T Consensus       278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l---------------------------  330 (371)
T 3auy_A          278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF---------------------------  330 (371)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHH---------------------------
T ss_pred             hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHH---------------------------
Confidence            468999999988      567999999 9999999999999999888876632                           


Q ss_pred             chhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535        118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~  154 (209)
                            ... ..+.+||+|||+++....+|++++|++
T Consensus       331 ------~~~-~~~~~vi~~th~~~~~~~~d~~~~l~k  360 (371)
T 3auy_A          331 ------RKV-KSIPQMIIITHHRELEDVADVIINVKK  360 (371)
T ss_dssp             ------HHC-CSCSEEEEEESCGGGGGGCSEEEEEEE
T ss_pred             ------HHh-ccCCeEEEEEChHHHHhhCCEEEEEEe
Confidence                  221 234689999999886556899999973

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.45  E-value=2.4e-15  Score=133.01  Aligned_cols=92  Identities=15%  Similarity=0.135  Sum_probs=72.8

Q ss_pred             chhhhcc-CCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCcccc
Q psy12535         26 LKEDFAQ-LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR  104 (209)
Q Consensus        26 l~~~i~~-lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~  104 (209)
                      +.+++.. +|.|++      |..||||||||   |||++++|+|||    ||+||+.+...+.                 
T Consensus       184 ~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~-----------------  233 (305)
T 2v9p_A          184 CWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL-----------------  233 (305)
T ss_dssp             HHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG-----------------
T ss_pred             HHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH-----------------
Confidence            4566776 888776      67999999999   999999999999    9999997655441                 


Q ss_pred             chhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhccCCCc
Q psy12535        105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPE  181 (209)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~~~~  181 (209)
                                                    .+||+++.+..+|+| +|++|+|++.|+++++   ...|..++....
T Consensus       234 ------------------------------~ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~  276 (305)
T 2v9p_A          234 ------------------------------YLHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD  276 (305)
T ss_dssp             ------------------------------GGTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred             ------------------------------HHhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence                                          128999998899999 9999999999999999   345666666543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.37  E-value=9.2e-14  Score=116.00  Aligned_cols=66  Identities=11%  Similarity=0.019  Sum_probs=43.3

Q ss_pred             ccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcccc
Q psy12535         51 GQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKE  130 (209)
Q Consensus        51 GqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (209)
                      ||||||+|||||+.+|+||||||||++    +...+.+                                 ++... .++
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~---------------------------------~l~~l-~~g  149 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKM---------------------------------FLTRL-GFG  149 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHH---------------------------------HHTTB-CTT
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHH---------------------------------HHHHh-cCC
Confidence            999999999999999999999999999    4445544                                 23333 357


Q ss_pred             ceeeeeeeehheecccceEEEeecccee
Q psy12535        131 KTVMLITHQIQYLTHVDHVMLLEKGSVE  158 (209)
Q Consensus       131 ~TiIvitH~l~~l~~~DrV~~L~~G~i~  158 (209)
                      +||| +||+++.+..   +...++|...
T Consensus       150 ~tii-vtHd~~~~~~---~~~~~~G~~~  173 (208)
T 3b85_A          150 SKMV-VTGDITQVDL---PGGQKSGLRL  173 (208)
T ss_dssp             CEEE-EEEC---------------CCHH
T ss_pred             CEEE-EECCHHHHhC---cCCCCCcHHH
Confidence            8999 9999886654   3345677553

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.33  E-value=6.4e-13  Score=123.97  Aligned_cols=87  Identities=14%  Similarity=0.059  Sum_probs=69.6

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhh-----hhhhhhhhhhhccccCCCCccccchhhhh
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH-----VGKHLFEDCITGLHTGVPRFDSRWGRSFF  110 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (209)
                      |+.......+.+|||||+||+++|+++..+|+++|+| ||++||..     ....+.+                      
T Consensus       342 g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~----------------------  398 (525)
T 1tf7_A          342 NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG----------------------  398 (525)
T ss_dssp             TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH----------------------
T ss_pred             CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH----------------------
Confidence            3444555667789999999999999999999999999 99999997     4444433                      


Q ss_pred             cccccccchhhhhhhhccccceeeeeeeeh----------heecc-cceEEEeeccc
Q psy12535        111 GSALGVRGALSLVRTSFLKEKTVMLITHQI----------QYLTH-VDHVMLLEKGS  156 (209)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~TiIvitH~l----------~~l~~-~DrV~~L~~G~  156 (209)
                                 +++.....|.|+|++||+.          ..+.. ||+|++|++|+
T Consensus       399 -----------ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          399 -----------VTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             -----------HHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             -----------HHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence                       3333344689999999998          66664 79999999987

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.02  E-value=3.8e-11  Score=119.65  Aligned_cols=90  Identities=13%  Similarity=0.022  Sum_probs=71.3

Q ss_pred             eecCCccchhhhhHHHH--hhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         46 VSLSGGQRARISLARAV--YKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal--~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      ..+|+|++++..+|+++  +.+|+++||||||+|+|+.....+...++..                              
T Consensus       720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~------------------------------  769 (934)
T 3thx_A          720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY------------------------------  769 (934)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHH------------------------------
T ss_pred             HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH------------------------------
Confidence            36788888888888888  8999999999999999998776664433322                              


Q ss_pred             hhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535        124 RTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       124 ~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                        ... .++|+|++||+.+....+|++..+++|++...++.+++.
T Consensus       770 --l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~  812 (934)
T 3thx_A          770 --IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT  812 (934)
T ss_dssp             --HHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred             --HHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence              122 488999999998888889999999999999888777653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.95  E-value=1.1e-10  Score=103.57  Aligned_cols=71  Identities=13%  Similarity=0.092  Sum_probs=54.6

Q ss_pred             CccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccc
Q psy12535         50 GGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK  129 (209)
Q Consensus        50 gGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (209)
                      |||+||++|||||..+|+++||||||+.   .    +.+                                 ++... ..
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~~---------------------------------~l~~~-~~  263 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRSS---E----AYD---------------------------------FYNVL-CS  263 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HHH---------------------------------HHHHH-HT
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HHH---------------------------------HHHHH-hc
Confidence            8999999999999999999999999982   1    212                                 11111 23


Q ss_pred             c-ceeeeeeeehheecccceEEEeeccceeecc
Q psy12535        130 E-KTVMLITHQIQYLTHVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       130 ~-~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G  161 (209)
                      + .|+|+++|+.+....+||+++|.+|.....+
T Consensus       264 g~~tvi~t~H~~~~~~~~dri~~l~~g~~~~~~  296 (330)
T 2pt7_A          264 GHKGTLTTLHAGSSEEAFIRLANMSSSNSAARN  296 (330)
T ss_dssp             TCCCEEEEEECSSHHHHHHHHHHHHHTSGGGTT
T ss_pred             CCCEEEEEEcccHHHHHhhhheehhcCCcccCC
Confidence            4 4799999999966678999999998754333

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.82  E-value=2.2e-10  Score=104.95  Aligned_cols=42  Identities=14%  Similarity=0.295  Sum_probs=39.3

Q ss_pred             cCCc--cchhhhhHHHHhh----------hcceeeccCcchhhhhhhhhhhhhh
Q psy12535         48 LSGG--QRARISLARAVYK----------RADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        48 LSgG--qrQRlaiARal~~----------~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      ||+|  |+||++||+||+.          +|++++|||||++||+.....+.+.
T Consensus       155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~  208 (413)
T 1tq4_A          155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD  208 (413)
T ss_dssp             EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred             eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHH
Confidence            9999  9999999999999          9999999999999999988877664

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.76  E-value=1.1e-09  Score=108.98  Aligned_cols=82  Identities=9%  Similarity=0.026  Sum_probs=60.7

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      ...+.+|+||+|++.|+++ +.+|+++||||||+|+|+.....+...++..                             
T Consensus       731 ~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~-----------------------------  780 (918)
T 3thx_B          731 KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEY-----------------------------  780 (918)
T ss_dssp             ---CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred             HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----------------------------
Confidence            4456899999999999999 8999999999999999998877776443322                             


Q ss_pred             hhhhc-cccceeeeeeeehheecccceEEE-eeccce
Q psy12535        123 VRTSF-LKEKTVMLITHQIQYLTHVDHVML-LEKGSV  157 (209)
Q Consensus       123 ~~~~~-~~~~TiIvitH~l~~l~~~DrV~~-L~~G~i  157 (209)
                         .. ..+.|+|++||+++....+|+.-- +.++.+
T Consensus       781 ---L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~  814 (918)
T 3thx_B          781 ---FIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM  814 (918)
T ss_dssp             ---HHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred             ---HHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence               11 248899999999988776665421 344444

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.71  E-value=5.4e-09  Score=89.62  Aligned_cols=78  Identities=17%  Similarity=0.159  Sum_probs=50.9

Q ss_pred             eecCCcc-chhhhhHHHHhhhcceeeccCcchhhh------h-hhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         46 VSLSGGQ-RARISLARAVYKRADVYLLDDPLSAVD------A-HVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        46 ~~LSgGq-rQRlaiARal~~~p~illLDEPts~LD------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      ..+|.++ +||+. |+++..+|+++|+||||+.++      . .....+.+                             
T Consensus       128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~-----------------------------  177 (296)
T 1cr0_A          128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMT-----------------------------  177 (296)
T ss_dssp             CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHH-----------------------------
T ss_pred             CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHH-----------------------------
Confidence            4577777 67776 999999999999999999543      2 11122222                             


Q ss_pred             chhhhhhhhcc-ccceeeeeeeeh--h--------------------eec-ccceEEEeeccce
Q psy12535        118 GALSLVRTSFL-KEKTVMLITHQI--Q--------------------YLT-HVDHVMLLEKGSV  157 (209)
Q Consensus       118 ~~~~~~~~~~~-~~~TiIvitH~l--~--------------------~l~-~~DrV~~L~~G~i  157 (209)
                          .++.... .+.|||++||+.  +                    .+. .||+|++|++|+.
T Consensus       178 ----~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          178 ----KLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             ----HHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             ----HHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence                3333332 388999999985  4                    454 4899999999875

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.69  E-value=2.7e-09  Score=107.32  Aligned_cols=87  Identities=8%  Similarity=0.030  Sum_probs=61.5

Q ss_pred             ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR  124 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (209)
                      .+.+|+++++ +++|++++.+|+++|||||++|+|+.....+...++                                .
T Consensus       849 ~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il--------------------------------~  895 (1022)
T 2o8b_B          849 ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVV--------------------------------K  895 (1022)
T ss_dssp             -CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHH--------------------------------H
T ss_pred             hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHH--------------------------------H
Confidence            3567877765 999999999999999999999999976544333222                                2


Q ss_pred             hhccc-cceeeeeeeehheecc-cceEEEeecccee--ecchhhH
Q psy12535        125 TSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVE--AFGTTTQ  165 (209)
Q Consensus       125 ~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~--~~G~~~~  165 (209)
                      ....+ +.|+|++||+++.+.. +|++.++ +|++.  +.|.+++
T Consensus       896 ~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~  939 (1022)
T 2o8b_B          896 ELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED  939 (1022)
T ss_dssp             HHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred             HHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence            22233 7899999999998875 6888886 68887  4555443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.65  E-value=4.5e-09  Score=92.16  Aligned_cols=74  Identities=12%  Similarity=0.115  Sum_probs=55.2

Q ss_pred             ccceecCCccchhhhhHHHHhhhcc--eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRAD--VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~--illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+||   |||++||||++.+|+  +|+|| ||+++|+.....-+.                                
T Consensus       200 ~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~--------------------------------  243 (302)
T 3b9q_A          200 SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFN--------------------------------  243 (302)
T ss_dssp             HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHH--------------------------------
T ss_pred             HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHH--------------------------------
Confidence            3455799   999999999999999  99999 999999864321110                                


Q ss_pred             hhhhhhccccceeeeeee---------ehheecc-cceEEEeecccee
Q psy12535        121 SLVRTSFLKEKTVMLITH---------QIQYLTH-VDHVMLLEKGSVE  158 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH---------~l~~l~~-~DrV~~L~~G~i~  158 (209)
                            ...+.|+|++||         .++.+.. ...|.++..|+.+
T Consensus       244 ------~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~  285 (302)
T 3b9q_A          244 ------EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  285 (302)
T ss_dssp             ------HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             ------HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence                  113789999999         3344433 4789999999764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.59  E-value=1.4e-09  Score=89.22  Aligned_cols=84  Identities=14%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             eeecccceecCCccchhh-hhHH---HHhhhcceeeccC--cchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535         39 TLVGDKGVSLSGGQRARI-SLAR---AVYKRADVYLLDD--PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS  112 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRl-aiAR---al~~~p~illLDE--Pts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (209)
                      ..+++.+..+|+|||+++ ++++   |+..+|+||||||  |+..+|......+.+                        
T Consensus        75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~------------------------  130 (189)
T 2i3b_A           75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ------------------------  130 (189)
T ss_dssp             EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH------------------------
T ss_pred             cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH------------------------
Confidence            478888999999999998 5555   6899999999999  888888754433322                        


Q ss_pred             cccccchhhhhhhhccccceeee----eeeehheecccceEEEeeccceeec
Q psy12535        113 ALGVRGALSLVRTSFLKEKTVML----ITHQIQYLTHVDHVMLLEKGSVEAF  160 (209)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~TiIv----itH~l~~l~~~DrV~~L~~G~i~~~  160 (209)
                               +    ....+|+|+    |+|+.+ ...+|+|..+.+|+|+..
T Consensus       131 ---------~----l~~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          131 ---------T----LSTPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV  168 (189)
T ss_dssp             ---------H----HHCSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred             ---------H----HhCCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence                     1    112345553    349875 455688888888888754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.58  E-value=1e-08  Score=92.30  Aligned_cols=74  Identities=12%  Similarity=0.115  Sum_probs=55.1

Q ss_pred             ccceecCCccchhhhhHHHHhhhcc--eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRAD--VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~--illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+||   +||++||||++.+|+  +|+|| ||+|+|+.....-+.                                
T Consensus       257 ~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~--------------------------------  300 (359)
T 2og2_A          257 SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFN--------------------------------  300 (359)
T ss_dssp             HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHH--------------------------------
T ss_pred             hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHH--------------------------------
Confidence            3445799   999999999999999  99999 999999864321111                                


Q ss_pred             hhhhhhccccceeeeeee---------ehheecc-cceEEEeecccee
Q psy12535        121 SLVRTSFLKEKTVMLITH---------QIQYLTH-VDHVMLLEKGSVE  158 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH---------~l~~l~~-~DrV~~L~~G~i~  158 (209)
                            ...+.|+|++||         .++.+.. ...|.++..|+.+
T Consensus       301 ------~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~  342 (359)
T 2og2_A          301 ------EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  342 (359)
T ss_dssp             ------HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             ------HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence                  113789999999         3344433 4789999888653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.54  E-value=4.1e-08  Score=79.40  Aligned_cols=76  Identities=7%  Similarity=0.027  Sum_probs=54.5

Q ss_pred             cCCccchhhhhHHHHhhhcc--eeeccCcchhh--hhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         48 LSGGQRARISLARAVYKRAD--VYLLDDPLSAV--DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        48 LSgGqrQRlaiARal~~~p~--illLDEPts~L--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      .|.++.++...+.+...+|+  ++|+||||+.+  |+.....+++.                                 +
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~---------------------------------l  150 (235)
T 2w0m_A          104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYY---------------------------------L  150 (235)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHH---------------------------------H
T ss_pred             CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHH---------------------------------H
Confidence            47788888877777778999  99999999988  87655555442                                 2


Q ss_pred             hhhc-cccceeeeeeeeh--------heecc-cceEEEeeccc
Q psy12535        124 RTSF-LKEKTVMLITHQI--------QYLTH-VDHVMLLEKGS  156 (209)
Q Consensus       124 ~~~~-~~~~TiIvitH~l--------~~l~~-~DrV~~L~~G~  156 (209)
                      +... ..+.|||++||+.        ..+.. ||+|++|+...
T Consensus       151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~  193 (235)
T 2w0m_A          151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI  193 (235)
T ss_dssp             HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred             HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence            2222 2478999999998        44554 79999998753

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.45  E-value=2.7e-09  Score=87.22  Aligned_cols=60  Identities=5%  Similarity=-0.026  Sum_probs=45.1

Q ss_pred             HHhhhcceeeccCcchhh----hhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc-cccceeee
Q psy12535         61 AVYKRADVYLLDDPLSAV----DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF-LKEKTVML  135 (209)
Q Consensus        61 al~~~p~illLDEPts~L----D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~TiIv  135 (209)
                      +|+.+|++++|||||+++    |+.....+.+.                                 ++... ..+.|+|+
T Consensus       137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~---------------------------------l~~l~~~~g~tvi~  183 (207)
T 1znw_A          137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTA---------------------------------RIELAAQGDFDKVV  183 (207)
T ss_dssp             EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH---------------------------------HHHHHGGGGSSEEE
T ss_pred             EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH---------------------------------HHHHhhhccCcEEE
Confidence            788999999999999998    66566555442                                 22222 24789999


Q ss_pred             eeeehheec-ccceEEEee
Q psy12535        136 ITHQIQYLT-HVDHVMLLE  153 (209)
Q Consensus       136 itH~l~~l~-~~DrV~~L~  153 (209)
                      |||+++.+. .||+|++|.
T Consensus       184 vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          184 VNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             ECSSHHHHHHHHHHHHC--
T ss_pred             ECCCHHHHHHHHHHHHHhc
Confidence            999999876 489999984

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.44  E-value=1.4e-09  Score=90.17  Aligned_cols=44  Identities=11%  Similarity=0.109  Sum_probs=39.7

Q ss_pred             eecCCccchhhhh-----HHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         46 VSLSGGQRARISL-----ARAVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        46 ~~LSgGqrQRlai-----ARal~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      .+|||||+||++|     ||+++.+|++++|||||+++|..+...+.+.
T Consensus       121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~  169 (218)
T 1z6g_A          121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKR  169 (218)
T ss_dssp             ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence            5789999999999     8999999999999999999999877776553

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.44  E-value=3.3e-08  Score=96.72  Aligned_cols=64  Identities=16%  Similarity=0.092  Sum_probs=50.9

Q ss_pred             ecCCccchhhhhHHHH--hhhcceeeccCc---chhhhhhhh-hhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         47 SLSGGQRARISLARAV--YKRADVYLLDDP---LSAVDAHVG-KHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        47 ~LSgGqrQRlaiARal--~~~p~illLDEP---ts~LD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      .+|+|+++++.+|+++  +.+|+++|||||   |+++|.... ..+.+                                
T Consensus       635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~--------------------------------  682 (765)
T 1ewq_A          635 GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE--------------------------------  682 (765)
T ss_dssp             CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH--------------------------------
T ss_pred             cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH--------------------------------
Confidence            5789999999999999  999999999999   999998653 23433                                


Q ss_pred             hhhhhhccccceeeeeeeehheeccc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTHV  146 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~~  146 (209)
                       .+..   .+.|+|++||+.+....+
T Consensus       683 -~L~~---~g~~vl~~TH~~~l~~~~  704 (765)
T 1ewq_A          683 -ALHE---RRAYTLFATHYFELTALG  704 (765)
T ss_dssp             -HHHH---HTCEEEEECCCHHHHTCC
T ss_pred             -HHHh---CCCEEEEEeCCHHHHHhh
Confidence             2222   478999999998875544

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.42  E-value=1.1e-08  Score=94.17  Aligned_cols=81  Identities=14%  Similarity=-0.045  Sum_probs=65.8

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      ....||+|| |||+||   +.+|++      |+|||+.+...+.+.+                                 
T Consensus       255 ~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll---------------------------------  291 (438)
T 2dpy_A          255 SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALV---------------------------------  291 (438)
T ss_dssp             CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHH---------------------------------
T ss_pred             hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHH---------------------------------
Confidence            367899999 999999   888888      9999998877775522                                 


Q ss_pred             hhhcc----ccc-----eeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535        124 RTSFL----KEK-----TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       124 ~~~~~----~~~-----TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                      .+...    .|+     ||+++||+++ ...+|++++|.+|+|+..|++.++..
T Consensus       292 ~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~  344 (438)
T 2dpy_A          292 ERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH  344 (438)
T ss_dssp             TTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred             HHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence            22222    254     9999999999 66789999999999999999988764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.39  E-value=2.1e-08  Score=81.10  Aligned_cols=42  Identities=12%  Similarity=0.136  Sum_probs=38.2

Q ss_pred             echhhhcc-CCCCCceeecccceecCCccchhhhhHHHHhhhcceee
Q psy12535         25 ALKEDFAQ-LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYL   70 (209)
Q Consensus        25 ~l~~~i~~-lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~ill   70 (209)
                      ++.+++.. +| |++|.++|+   |||||+|||+||||++.+|++..
T Consensus        84 ~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~~  126 (171)
T 2f1r_A           84 DLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFRQ  126 (171)
T ss_dssp             CHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGCS
T ss_pred             CHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccCc
Confidence            77788888 99 999999995   99999999999999999999853

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.36  E-value=4.5e-07  Score=73.49  Aligned_cols=81  Identities=17%  Similarity=0.142  Sum_probs=47.1

Q ss_pred             chhhhhHHHHhh-------hcceeeccCcchhhhhhhhhh--hhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         53 RARISLARAVYK-------RADVYLLDDPLSAVDAHVGKH--LFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        53 rQRlaiARal~~-------~p~illLDEPts~LD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      ++.+..+++++.       +|++++||||++++|+.....  ..+.                       ......++..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r-----------------------~~~~~~~~~~l  162 (231)
T 4a74_A          106 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER-----------------------QQKLAKHLADL  162 (231)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH-----------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH-----------------------HHHHHHHHHHH
Confidence            344666777766       999999999999999842110  0000                       00001112233


Q ss_pred             hhhc-cccceeeeeeeehh----eecc-cceEEEeeccc
Q psy12535        124 RTSF-LKEKTVMLITHQIQ----YLTH-VDHVMLLEKGS  156 (209)
Q Consensus       124 ~~~~-~~~~TiIvitH~l~----~l~~-~DrV~~L~~G~  156 (209)
                      .... ..+.|||++||..+    .+.. +|++++|++|+
T Consensus       163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            3332 24899999999444    4765 79999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.36  E-value=5e-08  Score=90.83  Aligned_cols=67  Identities=24%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             hHHHHh-hhcceeeccCcchh-----hhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccc
Q psy12535         58 LARAVY-KRADVYLLDDPLSA-----VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK  131 (209)
Q Consensus        58 iARal~-~~p~illLDEPts~-----LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (209)
                      ++.+|. .+|++++|||||+.     +|+.....+++                                 +++.....|+
T Consensus       130 ~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~---------------------------------ll~~l~~~g~  176 (525)
T 1tf7_A          130 INYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR---------------------------------LVARLKQIGA  176 (525)
T ss_dssp             HHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH---------------------------------HHHHHHHHTC
T ss_pred             HHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHH---------------------------------HHHHHHHCCC
Confidence            344442 56778999999985     57776666655                                 3333334589


Q ss_pred             eeeeeeeehhee---------cc-cceEEEeeccce
Q psy12535        132 TVMLITHQIQYL---------TH-VDHVMLLEKGSV  157 (209)
Q Consensus       132 TiIvitH~l~~l---------~~-~DrV~~L~~G~i  157 (209)
                      |||++||+++.+         .. ||+|++|++|++
T Consensus       177 tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~  212 (525)
T 1tf7_A          177 TTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE  212 (525)
T ss_dssp             EEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred             EEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence            999999999875         44 899999999553

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.35  E-value=1.8e-08  Score=90.01  Aligned_cols=81  Identities=19%  Similarity=0.112  Sum_probs=64.9

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      +...+||+|| |||++|   +.+|++      |+|+|+.....+.+                                 +
T Consensus       167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~---------------------------------l  203 (347)
T 2obl_A          167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPK---------------------------------L  203 (347)
T ss_dssp             ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHH---------------------------------H
T ss_pred             hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHH---------------------------------H
Confidence            4567899999 999999   578777      99999987766655                                 2


Q ss_pred             hhhhc--cccc-----eeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535        123 VRTSF--LKEK-----TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       123 ~~~~~--~~~~-----TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      +.+..  ..|.     ||+++||+++ -..||+|++|.+|+|+..++.+++.
T Consensus       204 ler~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~  254 (347)
T 2obl_A          204 LERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN  254 (347)
T ss_dssp             HTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred             HHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence            22222  2466     9999999998 4568999999999999999998874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.35  E-value=3.3e-07  Score=73.94  Aligned_cols=80  Identities=15%  Similarity=0.092  Sum_probs=54.2

Q ss_pred             ecCCcc--chhhhhHHHHhhh-cceeeccCcchhhhhhhh-----hhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535         47 SLSGGQ--RARISLARAVYKR-ADVYLLDDPLSAVDAHVG-----KHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG  118 (209)
Q Consensus        47 ~LSgGq--rQRlaiARal~~~-p~illLDEPts~LD~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (209)
                      .+|+++  +|+++.+++++.+ |+++|+|||++.+|....     ..+.+                              
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~------------------------------  133 (220)
T 2cvh_A           84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSR------------------------------  133 (220)
T ss_dssp             CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHH------------------------------
T ss_pred             ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHH------------------------------
Confidence            556675  4678888899986 999999999999997432     11111                              


Q ss_pred             hhhhhhhhcc-ccceeeeeeeehh-------------eec-ccceEEEeeccc
Q psy12535        119 ALSLVRTSFL-KEKTVMLITHQIQ-------------YLT-HVDHVMLLEKGS  156 (209)
Q Consensus       119 ~~~~~~~~~~-~~~TiIvitH~l~-------------~l~-~~DrV~~L~~G~  156 (209)
                      ++..++.... .+.|+|+++|...             .+. .+|.|++|++..
T Consensus       134 ~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~  186 (220)
T 2cvh_A          134 QLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLP  186 (220)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECS
T ss_pred             HHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEec
Confidence            1112333322 3789999999765             233 479999998653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.32  E-value=8.9e-08  Score=82.06  Aligned_cols=61  Identities=11%  Similarity=0.069  Sum_probs=46.9

Q ss_pred             hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcccccee
Q psy12535         54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTV  133 (209)
Q Consensus        54 QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ti  133 (209)
                      -|++||+||..+|+++||||||   |+.+...+++                                    . ...|+||
T Consensus        87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~------------------------------------~-~~~g~~v  126 (261)
T 2eyu_A           87 FADALRAALREDPDVIFVGEMR---DLETVETALR------------------------------------A-AETGHLV  126 (261)
T ss_dssp             HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH------------------------------------H-HHTTCEE
T ss_pred             HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH------------------------------------H-HccCCEE
Confidence            3899999999999999999999   7765433222                                    1 1258899


Q ss_pred             eeeeeehheecccceEEEeec
Q psy12535        134 MLITHQIQYLTHVDHVMLLEK  154 (209)
Q Consensus       134 IvitH~l~~l~~~DrV~~L~~  154 (209)
                      ++++|+.+....+|++++|..
T Consensus       127 l~t~H~~~~~~~~dri~~l~~  147 (261)
T 2eyu_A          127 FGTLHTNTAIDTIHRIVDIFP  147 (261)
T ss_dssp             EEEECCSSHHHHHHHHHHTSC
T ss_pred             EEEeCcchHHHHHHHHhhhcC
Confidence            999999886556788877753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.32  E-value=4e-08  Score=86.42  Aligned_cols=37  Identities=16%  Similarity=0.051  Sum_probs=34.6

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA   80 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~   80 (209)
                      ....|||||+||+++|||++.+|+|||||||++.+|+
T Consensus       173 ~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          173 CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG  209 (312)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence            3468999999999999999999999999999999986

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.31  E-value=6.2e-08  Score=83.43  Aligned_cols=35  Identities=11%  Similarity=0.123  Sum_probs=31.7

Q ss_pred             ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhh
Q psy12535         45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV   82 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~   82 (209)
                      ..+|||||+||+++|||++.   +++||||+++||+..
T Consensus        96 ~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD  130 (270)
T 3sop_A           96 KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD  130 (270)
T ss_dssp             HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH
T ss_pred             HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH
Confidence            45899999999999999875   999999999999864

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.28  E-value=7.6e-08  Score=94.59  Aligned_cols=84  Identities=10%  Similarity=0.022  Sum_probs=59.3

Q ss_pred             eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535         46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT  125 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (209)
                      +.+|+++++ ++.+...+.+|+++|||||++|+|+.....+...++                                ..
T Consensus       668 stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll--------------------------------~~  714 (800)
T 1wb9_A          668 STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACA--------------------------------EN  714 (800)
T ss_dssp             --CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHH--------------------------------HH
T ss_pred             hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHH--------------------------------HH
Confidence            356666654 444455688999999999999999876555433222                                22


Q ss_pred             hcc-ccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535        126 SFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT  162 (209)
Q Consensus       126 ~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~  162 (209)
                      ... .+.|+|++||+.+....+|++..+.+|++.....
T Consensus       715 l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~  752 (800)
T 1wb9_A          715 LANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEH  752 (800)
T ss_dssp             HHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEE
T ss_pred             HHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEc
Confidence            223 3789999999998877789888888888865543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.23  E-value=3.8e-07  Score=77.62  Aligned_cols=39  Identities=8%  Similarity=0.044  Sum_probs=31.8

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcch--hhhhhhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLS--AVDAHVG   83 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts--~LD~~~~   83 (209)
                      +.....||+||.|++   ++++.+|+++|+||||+  ++|....
T Consensus       113 ~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~  153 (279)
T 1nlf_A          113 GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENAS  153 (279)
T ss_dssp             TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCH
T ss_pred             CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCch
Confidence            445678999997754   78889999999999999  8887543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.13  E-value=2.8e-07  Score=82.56  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=46.4

Q ss_pred             hhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeee
Q psy12535         57 SLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLI  136 (209)
Q Consensus        57 aiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvi  136 (209)
                      +|||||..+|++||+|||+   |..+...+.+                                     ....|+|+|++
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~-------------------------------------~~~~G~~vl~t  227 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLALT-------------------------------------AAETGHLVFGT  227 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHHHH-------------------------------------HHHTTCEEEEE
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHHHH-------------------------------------HHhcCCEEEEE
Confidence            8999999999999999999   5544332222                                     12358999999


Q ss_pred             eeehheecccceEEEeecc
Q psy12535        137 THQIQYLTHVDHVMLLEKG  155 (209)
Q Consensus       137 tH~l~~l~~~DrV~~L~~G  155 (209)
                      +|+.+.+..+||++.|..|
T Consensus       228 ~H~~~~~~~~dRli~l~~~  246 (356)
T 3jvv_A          228 LHTTSAAKTIDRVVDVFPA  246 (356)
T ss_dssp             ESCSSHHHHHHHHHHTSCH
T ss_pred             EccChHHHHHHHHhhhcCc
Confidence            9999988778999988654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.07  E-value=1.6e-06  Score=77.10  Aligned_cols=95  Identities=13%  Similarity=0.017  Sum_probs=52.7

Q ss_pred             CCccchhhhhHHHHh-------hhcceeeccCcchhhhhhhhh--hhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         49 SGGQRARISLARAVY-------KRADVYLLDDPLSAVDAHVGK--HLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        49 SgGqrQRlaiARal~-------~~p~illLDEPts~LD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      |.+|+|++.++++++       .+|+++|+||||+++|+....  .+.+..                       .....+
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~-----------------------~~~~~~  264 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ-----------------------QKLAKH  264 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHH-----------------------HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHH-----------------------HHHHHH
Confidence            567899999999999       579999999999999985310  010000                       000111


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL  166 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l  166 (209)
                      +..+..... .+.|||+++|....... ++.......|++.+.+....+
T Consensus       265 l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL  313 (349)
T 1pzn_A          265 LADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV  313 (349)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred             HHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence            222333222 47899999998765442 344566778888877665444

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.92  E-value=1.9e-07  Score=75.58  Aligned_cols=46  Identities=17%  Similarity=0.139  Sum_probs=38.6

Q ss_pred             ccceecCCcc----chhhhhHHHHhhhcceeeccCcchh-------hhhhhhhhhhh
Q psy12535         43 DKGVSLSGGQ----RARISLARAVYKRADVYLLDDPLSA-------VDAHVGKHLFE   88 (209)
Q Consensus        43 ~~g~~LSgGq----rQRlaiARal~~~p~illLDEPts~-------LD~~~~~~~~~   88 (209)
                      ..+..+|+|+    +||+++|++++.+|+++++||||++       ||+.....+..
T Consensus        85 ~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r  141 (211)
T 3asz_A           85 MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR  141 (211)
T ss_dssp             ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred             CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence            3466899996    4799999999999999999999999       89876666544

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.83  E-value=7.8e-07  Score=70.86  Aligned_cols=80  Identities=11%  Similarity=0.081  Sum_probs=54.4

Q ss_pred             CCccchhhhhHH------HHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         49 SGGQRARISLAR------AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        49 SgGqrQRlaiAR------al~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      |+|++|++.++.      +++.+|+...+|+   ++|+..... ++.                                 
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~---------------------------------  138 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEE---------------------------------  138 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHH---------------------------------
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHH---------------------------------
Confidence            899999999999      9999999988884   788865444 332                                 


Q ss_pred             hhhhccccceeeeeeee-hheecc-cceEEEeeccceeecchhhHHh
Q psy12535        123 VRTSFLKEKTVMLITHQ-IQYLTH-VDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~-l~~l~~-~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      +......+.++|.+||. ++.+.. ||+|+  ++|+++..|+++-+.
T Consensus       139 ~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~  183 (189)
T 2bdt_A          139 FESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE  183 (189)
T ss_dssp             HHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred             HhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence            11223346799999998 888875 79998  999999999987653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.81  E-value=4.2e-07  Score=79.15  Aligned_cols=59  Identities=12%  Similarity=0.186  Sum_probs=45.6

Q ss_pred             eeeechhhhccCCCCCce------eecccceecCCccchhhhhH--HHHhhhcceeeccCcchhhhhhh
Q psy12535         22 KVCALKEDFAQLPSGDRT------LVGDKGVSLSGGQRARISLA--RAVYKRADVYLLDDPLSAVDAHV   82 (209)
Q Consensus        22 ~~~~l~~~i~~lp~g~~t------~vg~~g~~LSgGqrQRlaiA--Ral~~~p~illLDEPts~LD~~~   82 (209)
                      ....+.+++..++.|++|      .+......+||||+||+++|  +++  +|+|+|+|||++++|+..
T Consensus       103 d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A          103 DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred             HHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence            345567788888888654      35667789999999999997  555  899999999999999854

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.72  E-value=6.4e-06  Score=65.76  Aligned_cols=51  Identities=14%  Similarity=0.107  Sum_probs=45.2

Q ss_pred             ecccceecCCccchh-hhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         41 VGDKGVSLSGGQRAR-ISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        41 vg~~g~~LSgGqrQR-laiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      ++.+...+|+||+|| +.++++++.+|.++++|||||++|......+++.+.
T Consensus       143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~  194 (210)
T 1pui_A          143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD  194 (210)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence            477777899999999 899999999999999999999999998888877543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.72  E-value=4e-06  Score=72.91  Aligned_cols=36  Identities=17%  Similarity=0.092  Sum_probs=31.7

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchh-hhhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA-VDAHV   82 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~-LD~~~   82 (209)
                      ....++|||||||+.+|||++    ++++||||++ ||+..
T Consensus       109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~  145 (301)
T 2qnr_A          109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLD  145 (301)
T ss_dssp             HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHH
T ss_pred             HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHH
Confidence            556789999999999999986    9999999985 99964

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.45  E-value=1.3e-05  Score=66.93  Aligned_cols=35  Identities=20%  Similarity=0.101  Sum_probs=30.2

Q ss_pred             ceecCCccchhhhhHHHHhhhcceeeccCcchhhhh
Q psy12535         45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA   80 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~   80 (209)
                      ...||+||+||+++ ++++.+|+++|||||....+.
T Consensus       114 ~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~  148 (245)
T 2jeo_A          114 VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ  148 (245)
T ss_dssp             ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred             cccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence            45799999999998 588899999999998776664

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.27  E-value=2.1e-06  Score=73.53  Aligned_cols=47  Identities=13%  Similarity=0.172  Sum_probs=43.2

Q ss_pred             CCCCCceeecccceecCCccchhhhhHHHHhhhcce--eeccCcchhhhhh
Q psy12535         33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV--YLLDDPLSAVDAH   81 (209)
Q Consensus        33 lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~i--llLDEPts~LD~~   81 (209)
                      ++.++++.+++++..+|+|  ||++++++++.+|++  +|+||+|+++|..
T Consensus       158 l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~  206 (261)
T 2eyu_A          158 LSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSL  206 (261)
T ss_dssp             HHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHH
Confidence            3467889999999999999  899999999999999  9999999999985

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.22  E-value=0.00037  Score=56.59  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=17.1

Q ss_pred             HHHHh--hhcceeeccCcchhhhhh
Q psy12535         59 ARAVY--KRADVYLLDDPLSAVDAH   81 (209)
Q Consensus        59 ARal~--~~p~illLDEPts~LD~~   81 (209)
                      +..++  .+|+++++|||++.+|+.
T Consensus       111 ~~~~~~~~~~~lliiD~~~~~~~~~  135 (243)
T 1n0w_A          111 ASAMMVESRYALLIVDSATALYRTD  135 (243)
T ss_dssp             HHHHHHHSCEEEEEEETSSGGGC--
T ss_pred             HHHHHhcCCceEEEEeCchHHHHHH
Confidence            44444  479999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.17  E-value=8.7e-06  Score=72.98  Aligned_cols=47  Identities=13%  Similarity=0.182  Sum_probs=42.9

Q ss_pred             CCCCCceeecccceecCCccchhhhhHHHHhhhcce--eeccCcchhhhhh
Q psy12535         33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV--YLLDDPLSAVDAH   81 (209)
Q Consensus        33 lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~i--llLDEPts~LD~~   81 (209)
                      ++.++++.+++++..+|+|  ||++||++++.+|++  +|+||+|++||..
T Consensus       269 l~~~l~~vv~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~  317 (372)
T 2ewv_A          269 LSFILQGIISQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL  317 (372)
T ss_dssp             HHHSCCEEEEEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred             HHHhhhEEEEEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence            3568889999999899999  899999999999999  9999999999964

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.13  E-value=1.7e-05  Score=70.18  Aligned_cols=87  Identities=13%  Similarity=-0.015  Sum_probs=54.6

Q ss_pred             eecCCccchhhhhHHHHh-hhcceeeccC---cc------hhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         46 VSLSGGQRARISLARAVY-KRADVYLLDD---PL------SAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal~-~~p~illLDE---Pt------s~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      ..+|+|++|+..+++++. .+|++++|||   |+      +++|+..+..+...+                         
T Consensus       257 ~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l-------------------------  311 (365)
T 1lw7_A          257 FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL-------------------------  311 (365)
T ss_dssp             HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH-------------------------
T ss_pred             HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH-------------------------
Confidence            356777888888888875 5999999999   65      578887666665432                         


Q ss_pred             ccchhhhhhhhc-cccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535        116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                              .... ..+.++|+++|.-..-+.++++.++++  +...++.++|.
T Consensus       312 --------~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~  354 (365)
T 1lw7_A          312 --------KKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ  354 (365)
T ss_dssp             --------HHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred             --------HHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence                    1111 237899999985333344677777754  55566666654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.01  E-value=0.00036  Score=54.82  Aligned_cols=29  Identities=17%  Similarity=0.045  Sum_probs=21.8

Q ss_pred             HHHhhhcceeeccCcch-hhhhhhhhhhhh
Q psy12535         60 RAVYKRADVYLLDDPLS-AVDAHVGKHLFE   88 (209)
Q Consensus        60 Ral~~~p~illLDEPts-~LD~~~~~~~~~   88 (209)
                      ...+.+|++||||||++ ++|+.....+++
T Consensus        95 ~~~~~~~~llilDE~~~~~~~~~~~~~l~~  124 (180)
T 3ec2_A           95 LKTVLNSPVLVLDDLGSERLSDWQRELISY  124 (180)
T ss_dssp             HHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred             HHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence            34467899999999985 889876655544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.99  E-value=0.00011  Score=69.75  Aligned_cols=87  Identities=15%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             CccchhhhhHHHHhhhcceeeccCc------chhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         50 GGQRARISLARAVYKRADVYLLDDP------LSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        50 gGqrQRlaiARal~~~p~illLDEP------ts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      +..++++.++.+....|+++|+|||      |++||+.....+.+.+...+                             
T Consensus       131 ~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l-----------------------------  181 (608)
T 3szr_A          131 GISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYI-----------------------------  181 (608)
T ss_dssp             CCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHT-----------------------------
T ss_pred             ccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHH-----------------------------
Confidence            3446777777777789999999999      99999987777765322110                             


Q ss_pred             hhhccccceeeeeeeehhee--------cc-----cceEEEeeccceeecchhhHHh
Q psy12535        124 RTSFLKEKTVMLITHQIQYL--------TH-----VDHVMLLEKGSVEAFGTTTQLL  167 (209)
Q Consensus       124 ~~~~~~~~TiIvitH~l~~l--------~~-----~DrV~~L~~G~i~~~G~~~~l~  167 (209)
                      .  ...+.+++++||+++..        ..     ...|+|+.++.++..|+.+++.
T Consensus       182 ~--~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~  236 (608)
T 3szr_A          182 Q--RQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV  236 (608)
T ss_dssp             T--SSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred             h--cCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence            0  12356788899987632        11     2457888899888888765543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.91  E-value=0.00026  Score=61.80  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=23.9

Q ss_pred             CCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535         49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus        49 SgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      +..++||++||||++.+|+.++|     .||+.+...+.+
T Consensus       204 ~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~  238 (304)
T 1rj9_A          204 EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE  238 (304)
T ss_dssp             HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence            33448999999999999995444     455544444433

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.88  E-value=0.00011  Score=67.23  Aligned_cols=36  Identities=8%  Similarity=0.019  Sum_probs=28.8

Q ss_pred             ecCCccchhhhhHHHHhhhcc---eeeccCcc-hhhhhhh
Q psy12535         47 SLSGGQRARISLARAVYKRAD---VYLLDDPL-SAVDAHV   82 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~---illLDEPt-s~LD~~~   82 (209)
                      .++.+++||++|||+++.+|+   +|++|||| ++||+..
T Consensus       118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d  157 (418)
T 2qag_C          118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD  157 (418)
T ss_dssp             HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH
Confidence            456788999999999999999   99999999 6899854

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.88  E-value=0.00015  Score=64.89  Aligned_cols=58  Identities=12%  Similarity=0.112  Sum_probs=39.9

Q ss_pred             hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceee
Q psy12535         55 RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVM  134 (209)
Q Consensus        55 RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiI  134 (209)
                      +.+|+++|..+|+++++|||+   |+.+...+++                                    . ...|.+++
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~------------------------------------~-~~~g~~vi  238 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVETALR------------------------------------A-AETGHLVF  238 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHH------------------------------------H-HTTTCEEE
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHH------------------------------------H-HhcCCEEE
Confidence            579999999999999999999   5543222211                                    1 12478999


Q ss_pred             eeeeehheecccceEEEe
Q psy12535        135 LITHQIQYLTHVDHVMLL  152 (209)
Q Consensus       135 vitH~l~~l~~~DrV~~L  152 (209)
                      .++|..+....+||++.|
T Consensus       239 ~t~H~~~~~~~~~rl~~l  256 (372)
T 2ewv_A          239 GTLHTNTAIDTIHRIVDI  256 (372)
T ss_dssp             ECCCCCSHHHHHHHHHHT
T ss_pred             EEECcchHHHHHHHHHHh
Confidence            999986644445665443

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.53  E-value=0.0011  Score=57.02  Aligned_cols=47  Identities=9%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             HhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehh
Q psy12535         62 VYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ  141 (209)
Q Consensus        62 l~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~  141 (209)
                      +..+|+|+|+|||++ ||......+++.                                 +.. ..++.++|++||+++
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~---------------------------------le~-~~~~~~~Il~t~~~~  175 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRT---------------------------------MEK-YSKNIRLIMVCDSMS  175 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHH---------------------------------HHH-STTTEEEEEEESCSC
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHH---------------------------------HHh-hcCCCEEEEEeCCHH
Confidence            466899999999999 999776666542                                 222 234679999999887


Q ss_pred             ee
Q psy12535        142 YL  143 (209)
Q Consensus       142 ~l  143 (209)
                      .+
T Consensus       176 ~l  177 (354)
T 1sxj_E          176 PI  177 (354)
T ss_dssp             SS
T ss_pred             HH
Confidence            54

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.47  E-value=0.001  Score=51.79  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=19.2

Q ss_pred             HHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535         61 AVYKRADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus        61 al~~~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      +++.+|++||||||++ ++...+..+++
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~  105 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFS  105 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHH
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHH
Confidence            4567899999999998 55544444444

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.08  E-value=0.00054  Score=56.76  Aligned_cols=40  Identities=18%  Similarity=0.203  Sum_probs=32.8

Q ss_pred             cccceecCCccchhhhhHHHH-hhhcceeecc----Ccchhhhhhhhhhhhh
Q psy12535         42 GDKGVSLSGGQRARISLARAV-YKRADVYLLD----DPLSAVDAHVGKHLFE   88 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal-~~~p~illLD----EPts~LD~~~~~~~~~   88 (209)
                      .+....|||    |+   +|+ +.+|++++||    |||+++|..+...+.+
T Consensus       147 ~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~  191 (246)
T 2bbw_A          147 RRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAA  191 (246)
T ss_dssp             TEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHH
T ss_pred             cCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHH
Confidence            455667898    65   677 8999999999    9999999987766655

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.02  E-value=0.0037  Score=55.02  Aligned_cols=46  Identities=17%  Similarity=0.252  Sum_probs=28.3

Q ss_pred             ccceecCCccchhhhhHHHH---hh--hcceeeccCcchhhhhhhhhhhhh
Q psy12535         43 DKGVSLSGGQRARISLARAV---YK--RADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal---~~--~p~illLDEPts~LD~~~~~~~~~   88 (209)
                      +.+..+|+||+||++|+|+|   +.  ++.++++|||+..-+......+++
T Consensus       292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~  342 (365)
T 1lw7_A          292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIE  342 (365)
T ss_dssp             ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred             cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence            44567999999999999999   77  899999999985554433333333

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.81  E-value=0.0075  Score=54.61  Aligned_cols=28  Identities=11%  Similarity=0.189  Sum_probs=18.6

Q ss_pred             hhhhhHHHHh--hhcceeeccCcchhhhhh
Q psy12535         54 ARISLARAVY--KRADVYLLDDPLSAVDAH   81 (209)
Q Consensus        54 QRlaiARal~--~~p~illLDEPts~LD~~   81 (209)
                      +.+..++.++  .+|+++++|||++.+|..
T Consensus       260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~  289 (400)
T 3lda_A          260 RLLDAAAQMMSESRFSLIVVDSVMALYRTD  289 (400)
T ss_dssp             HHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred             HHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence            3333344443  459999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.81  E-value=0.00058  Score=59.44  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=24.2

Q ss_pred             ecCCccchhhhhHHHHhhhcceeeccCc
Q psy12535         47 SLSGGQRARISLARAVYKRADVYLLDDP   74 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~illLDEP   74 (209)
                      +||+||+||+..+++++++|+++  |||
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~  166 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA  166 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH
Confidence            68999999999999999999987  999

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.24  E-value=0.00023  Score=57.61  Aligned_cols=48  Identities=15%  Similarity=0.074  Sum_probs=38.7

Q ss_pred             hhhccCCCC--CceeecccceecCCccchhhhhH-HHHhhhcceeeccCcc
Q psy12535         28 EDFAQLPSG--DRTLVGDKGVSLSGGQRARISLA-RAVYKRADVYLLDDPL   75 (209)
Q Consensus        28 ~~i~~lp~g--~~t~vg~~g~~LSgGqrQRlaiA-Ral~~~p~illLDEPt   75 (209)
                      +.+..++.|  ..+.+.+.+..+|+||+|++++| ++++.++.++++|||.
T Consensus        90 ~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~  140 (208)
T 3c8u_A           90 RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG  140 (208)
T ss_dssp             HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred             HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence            344444433  56677888889999999999998 9999999999999984

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.22  E-value=0.031  Score=45.03  Aligned_cols=67  Identities=15%  Similarity=0.134  Sum_probs=40.0

Q ss_pred             hhhHHHHh--hhcceeeccCcchhhh--hhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccc
Q psy12535         56 ISLARAVY--KRADVYLLDDPLSAVD--AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK  131 (209)
Q Consensus        56 laiARal~--~~p~illLDEPts~LD--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (209)
                      +..++.++  .+|+++++|+|++.+.  +......+..                                +.+.....+.
T Consensus       117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~--------------------------------l~~~~~~~~~  164 (247)
T 2dr3_A          117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQ--------------------------------LKRVLAGTGC  164 (247)
T ss_dssp             HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHH--------------------------------HHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHH--------------------------------HHHHHHHCCC
Confidence            44444444  5799999999999873  3211222121                                1111123478


Q ss_pred             eeeeeeeehhe--------ec-ccceEEEeec
Q psy12535        132 TVMLITHQIQY--------LT-HVDHVMLLEK  154 (209)
Q Consensus       132 TiIvitH~l~~--------l~-~~DrV~~L~~  154 (209)
                      |||+++|....        +. .+|.|++|+.
T Consensus       165 ~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          165 TSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             EEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             eEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            99999996654        23 3699999975

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.18  E-value=0.0047  Score=57.85  Aligned_cols=34  Identities=12%  Similarity=-0.069  Sum_probs=26.8

Q ss_pred             ecCCccchhh----------hhHHHHhhhcc-eeeccCcchhhhh
Q psy12535         47 SLSGGQRARI----------SLARAVYKRAD-VYLLDDPLSAVDA   80 (209)
Q Consensus        47 ~LSgGqrQRl----------aiARal~~~p~-illLDEPts~LD~   80 (209)
                      .+|+||+|+.          .+|+++...|. ++++||+++.++.
T Consensus       268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~  312 (512)
T 2ius_A          268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT  312 (512)
T ss_dssp             HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH
T ss_pred             HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh
Confidence            5799999874          35667778898 7889999999984

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.10  E-value=0.02  Score=50.62  Aligned_cols=26  Identities=15%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             chhhhhHHHHhhh--cceeeccCcchhh
Q psy12535         53 RARISLARAVYKR--ADVYLLDDPLSAV   78 (209)
Q Consensus        53 rQRlaiARal~~~--p~illLDEPts~L   78 (209)
                      .|-+.++++++.+  |+++|+|++++.+
T Consensus       125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          125 EQALEIADMLVRSGALDIIVIDSVAALV  152 (349)
T ss_dssp             HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence            3556788888765  9999999999987

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.91  E-value=0.0094  Score=49.29  Aligned_cols=60  Identities=10%  Similarity=0.168  Sum_probs=44.0

Q ss_pred             HHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeee
Q psy12535         59 ARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH  138 (209)
Q Consensus        59 ARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH  138 (209)
                      ++.++..++++|||     ||+.....+.+.+                                     .++.||+++||
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l-------------------------------------~~~~tI~i~th  138 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKM-------------------------------------PHARSIFILPP  138 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHC-------------------------------------TTCEEEEEECS
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHc-------------------------------------cCCEEEEEECC
Confidence            45667789999999     9998887776521                                     14789999999


Q ss_pred             ehheecccceEEEeeccceeecchhhHHhh
Q psy12535        139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLA  168 (209)
Q Consensus       139 ~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~  168 (209)
                      +++.+..  |+  +.+|    .++++++..
T Consensus       139 ~~~~l~~--Rl--~~rG----~~~~e~i~~  160 (219)
T 1s96_A          139 SKIELDR--RL--RGRG----QDSEEVIAK  160 (219)
T ss_dssp             SHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred             CHHHHHH--HH--HHcC----CCCHHHHHH
Confidence            9998765  32  5666    566777653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=94.65  E-value=0.0069  Score=55.15  Aligned_cols=36  Identities=17%  Similarity=0.093  Sum_probs=31.9

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVG   83 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~   83 (209)
                      ...+||+|++|++++|++|+..|.|+++    +.+|....
T Consensus       249 ~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~  284 (416)
T 1udx_A          249 PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE  284 (416)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred             CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence            3457999999999999999999999999    88888654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.59  E-value=0.011  Score=46.11  Aligned_cols=27  Identities=11%  Similarity=0.004  Sum_probs=24.0

Q ss_pred             ccceecCCccchhhhhHHHHhhhccee
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVY   69 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~il   69 (209)
                      ..+..+|+|++|++++||++.++|+++
T Consensus       105 ~~~~~ls~~~~~~v~~~R~~~r~~~~l  131 (191)
T 1zp6_A          105 RPLHYIVLRTTAAEAIERCLDRGGDSL  131 (191)
T ss_dssp             SCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred             CCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence            345689999999999999999999986

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.48  E-value=0.00099  Score=60.37  Aligned_cols=64  Identities=17%  Similarity=0.104  Sum_probs=47.5

Q ss_pred             hc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh-ccccceeeeeeeehh
Q psy12535         65 RA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS-FLKEKTVMLITHQIQ  141 (209)
Q Consensus        65 ~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~TiIvitH~l~  141 (209)
                      +|  +++++|||++.+|+......++                                 .+.+. ...++|++  +|.+.
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~---------------------------------~l~~~~~~~g~ti~--sh~~~  183 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLE---------------------------------GLRKITSRGANTLE--MKAKK  183 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHTTCCSSCSSS--HHHHH
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHH---------------------------------HHHHHHHhcCCccc--cccHH
Confidence            78  9999999999999976655544                                 22233 33466653  99988


Q ss_pred             eecc-cceEE-Eeecc-ceeecchh
Q psy12535        142 YLTH-VDHVM-LLEKG-SVEAFGTT  163 (209)
Q Consensus       142 ~l~~-~DrV~-~L~~G-~i~~~G~~  163 (209)
                      .+.. ++++. +|++| +++..|+.
T Consensus       184 ~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          184 EEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             HHHHHHHHHHHHhccCCceeecCCC
Confidence            7654 79999 99999 88877654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.16  E-value=0.0014  Score=52.93  Aligned_cols=32  Identities=9%  Similarity=0.107  Sum_probs=26.9

Q ss_pred             hHH-HHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535         58 LAR-AVYKRADVYLLDDPLSAVDAHVGKHLFED   89 (209)
Q Consensus        58 iAR-al~~~p~illLDEPts~LD~~~~~~~~~~   89 (209)
                      .|| +++.+|.+++|||+|+++|..+...+.+.
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~  148 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKR  148 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHH
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHH
Confidence            566 78899999999999999999887777553

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=93.81  E-value=0.018  Score=56.20  Aligned_cols=40  Identities=13%  Similarity=0.130  Sum_probs=34.7

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcch-hhhhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLS-AVDAHVG   83 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts-~LD~~~~   83 (209)
                      ...-+|.|+.+|..++++++.+++++|+|||.. +||....
T Consensus       187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~  227 (773)
T 2xau_A          187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDIL  227 (773)
T ss_dssp             SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHH
T ss_pred             CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHH
Confidence            345689999999999999999999999999997 8987543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.53  E-value=0.037  Score=50.20  Aligned_cols=32  Identities=9%  Similarity=0.017  Sum_probs=24.8

Q ss_pred             ecCCccchhhhhHHHHh--hhcceeeccCcchhhhh
Q psy12535         47 SLSGGQRARISLARAVY--KRADVYLLDDPLSAVDA   80 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~--~~p~illLDEPts~LD~   80 (209)
                      .+|.++.+  +.+|.+.  .+|+++|+|+++.-.+.
T Consensus       295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~  328 (454)
T 2r6a_A          295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS  328 (454)
T ss_dssp             TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred             CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence            57777654  6777776  67999999999987654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.07  E-value=0.091  Score=48.79  Aligned_cols=49  Identities=22%  Similarity=0.321  Sum_probs=35.8

Q ss_pred             eeecccceecCCccchhhhhHH--HHhhh---------------cceeeccCcchhhhhhhhhhhhh
Q psy12535         39 TLVGDKGVSLSGGQRARISLAR--AVYKR---------------ADVYLLDDPLSAVDAHVGKHLFE   88 (209)
Q Consensus        39 t~vg~~g~~LSgGqrQRlaiAR--al~~~---------------p~illLDEPts~LD~~~~~~~~~   88 (209)
                      +.+......+||||+|-.-+|.  +++..               -.+++|||+ +-+|......+++
T Consensus       371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~  436 (483)
T 3euj_A          371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFE  436 (483)
T ss_dssp             EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHH
T ss_pred             ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHH
Confidence            6777778899999999544433  33221               147999999 9999987777766

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=91.40  E-value=0.15  Score=47.06  Aligned_cols=27  Identities=22%  Similarity=0.257  Sum_probs=23.5

Q ss_pred             CccchhhhhHHHHhhhcceeeccCcch
Q psy12535         50 GGQRARISLARAVYKRADVYLLDDPLS   76 (209)
Q Consensus        50 gGqrQRlaiARal~~~p~illLDEPts   76 (209)
                      +++++|-.+++|....|.||++||+.+
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~  119 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDA  119 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhh
Confidence            467888899999999999999999954

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=91.20  E-value=0.093  Score=41.11  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=34.9

Q ss_pred             ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      +|..-..+.+.+|++++.+|+++++|  ||++|......+++.+.
T Consensus       145 Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          145 DLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             GGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred             ccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence            34443456688999999999999999  99999998888887543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.00  E-value=0.085  Score=45.84  Aligned_cols=30  Identities=23%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             ecCCccchhh---hhHHHHhhhcceeeccCcch
Q psy12535         47 SLSGGQRARI---SLARAVYKRADVYLLDDPLS   76 (209)
Q Consensus        47 ~LSgGqrQRl---aiARal~~~p~illLDEPts   76 (209)
                      .+|+|+.|++   +|++++..+|+++|+|+|..
T Consensus       165 ~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          165 HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            5689999999   99999999999999999974

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=90.97  E-value=0.012  Score=54.40  Aligned_cols=70  Identities=11%  Similarity=-0.033  Sum_probs=49.0

Q ss_pred             HHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeee
Q psy12535         60 RAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQ  139 (209)
Q Consensus        60 Ral~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~  139 (209)
                      |||..+ ||||+ ||+|++||. ...+...+                                .   ..-++++.+++|.
T Consensus        28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~eL--------------------------------t---~~~~~~iP~vsa~   69 (514)
T 1jcn_A           28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTSAL--------------------------------T---RKITLKTPLISSP   69 (514)
T ss_dssp             SCCCGG-GEEEC-CCCCCSCGG-GCBCCEES--------------------------------S---SSCEESSCEEECC
T ss_pred             cccccC-cEEec-cCccCCCcc-eeEEEeec--------------------------------c---CCeeEeceEEEEe
Confidence            789999 99999 999999993 33331111                                0   0125689999999


Q ss_pred             hhee--c-ccceEEEeeccceeec-chhhHHh
Q psy12535        140 IQYL--T-HVDHVMLLEKGSVEAF-GTTTQLL  167 (209)
Q Consensus       140 l~~l--~-~~DrV~~L~~G~i~~~-G~~~~l~  167 (209)
                      +..+  . .++++..+..+.++.. ++++++.
T Consensus        70 md~~t~~~la~~ia~~gg~gii~~~~t~e~~~  101 (514)
T 1jcn_A           70 MDTVTEADMAIAMALMGGIGFIHHNCTPEFQA  101 (514)
T ss_dssp             CTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred             hhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence            9876  2 3688888877777654 4676653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.28  E-value=0.0083  Score=55.92  Aligned_cols=57  Identities=12%  Similarity=0.144  Sum_probs=38.6

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV  123 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (209)
                      ....+|+||+||+++|.+           | ++|||+.....+++.+                                 
T Consensus       397 ~~~~~s~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l---------------------------------  431 (511)
T 2oap_1          397 QTMWVRGNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQF---------------------------------  431 (511)
T ss_dssp             EEEEESSSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEE---------------------------------
T ss_pred             EEEEEeCCCceEEEEEEE-----------E-EcCcccCCCeEEEEEe---------------------------------
Confidence            345689999999988621           6 9999987655544321                                 


Q ss_pred             hhhccccceeee--eeeehheecc
Q psy12535        124 RTSFLKEKTVML--ITHQIQYLTH  145 (209)
Q Consensus       124 ~~~~~~~~TiIv--itH~l~~l~~  145 (209)
                      ......++|+++  +||.++.+..
T Consensus       432 ~~~~~~~~tii~~~~sH~l~ei~~  455 (511)
T 2oap_1          432 VKWDPKEDKHIEVSMPKKLEKMAD  455 (511)
T ss_dssp             EEEETTTTEEEECSCCTHHHHHHH
T ss_pred             EEEcccCCEEEEcccHHHHHHHHH
Confidence            122234778874  8999998764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=88.89  E-value=0.081  Score=45.60  Aligned_cols=28  Identities=7%  Similarity=0.077  Sum_probs=20.3

Q ss_pred             hhhhHHHHhhhcceeeccCcchhhhhhhhhhh
Q psy12535         55 RISLARAVYKRADVYLLDDPLSAVDAHVGKHL   86 (209)
Q Consensus        55 RlaiARal~~~p~illLDEPts~LD~~~~~~~   86 (209)
                      +.+|++  +.+|+++|+|  |+|+|+.....+
T Consensus       174 ~~al~~--~~~~dlvIiD--T~G~~~~~~~~~  201 (296)
T 2px0_A          174 QQAKEL--FSEYDHVFVD--TAGRNFKDPQYI  201 (296)
T ss_dssp             HHHHHH--GGGSSEEEEE--CCCCCTTSHHHH
T ss_pred             HHHHHH--hcCCCEEEEe--CCCCChhhHHHH
Confidence            445554  4899999999  889998644333

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=88.60  E-value=0.015  Score=49.46  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=28.1

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcch
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLS   76 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts   76 (209)
                      ......|||||+||+.|++|+.++|++|  |+|+.
T Consensus       132 ~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~  164 (274)
T 2x8a_A          132 NQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL  164 (274)
T ss_dssp             HHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred             HHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence            3445679999999999999999999975  88875

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=88.25  E-value=0.23  Score=42.63  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=28.2

Q ss_pred             chhhhhHHHHhhhcceeeccCc-chhhhhhhhhhh
Q psy12535         53 RARISLARAVYKRADVYLLDDP-LSAVDAHVGKHL   86 (209)
Q Consensus        53 rQRlaiARal~~~p~illLDEP-ts~LD~~~~~~~   86 (209)
                      .+|.+|+++...+++++|+|+| ++++|......+
T Consensus       168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l  202 (295)
T 1ls1_A          168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL  202 (295)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHH
Confidence            3578899988899999999999 999987655544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=87.14  E-value=0.14  Score=45.26  Aligned_cols=70  Identities=9%  Similarity=0.015  Sum_probs=47.5

Q ss_pred             CCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcc
Q psy12535         49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL  128 (209)
Q Consensus        49 SgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (209)
                      +++..++-.|+.++..+|+.+++||+..+   ... .+++                                    ....
T Consensus       236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~-~~l~------------------------------------~l~~  275 (361)
T 2gza_A          236 NAPVTAATLLRSCLRMKPTRILLAELRGG---EAY-DFIN------------------------------------VAAS  275 (361)
T ss_dssp             ---CCHHHHHHHHTTSCCSEEEESCCCST---HHH-HHHH------------------------------------HHHT
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEcCchHH---HHH-HHHH------------------------------------HHhc
Confidence            57788999999999999999999999862   111 1111                                    1111


Q ss_pred             ccceeeeeeeehheecccceEEEeecccee
Q psy12535        129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVE  158 (209)
Q Consensus       129 ~~~TiIvitH~l~~l~~~DrV~~L~~G~i~  158 (209)
                      ...|++.++|..+....++|++.|..|...
T Consensus       276 g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~  305 (361)
T 2gza_A          276 GHGGSITSCHAGSCELTFERLALMVLQNRQ  305 (361)
T ss_dssp             TCCSCEEEEECSSHHHHHHHHHHHHTTSTT
T ss_pred             CCCeEEEEECCCCHHHHHHHHHHHHhcccc
Confidence            234788999987755567999999877543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=84.75  E-value=0.31  Score=43.98  Aligned_cols=16  Identities=25%  Similarity=0.463  Sum_probs=13.6

Q ss_pred             hcceeeccCcchhhhh
Q psy12535         65 RADVYLLDDPLSAVDA   80 (209)
Q Consensus        65 ~p~illLDEPts~LD~   80 (209)
                      +|+||++||+..-.+.
T Consensus       194 ~~~vL~IDEi~~l~~~  209 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGK  209 (440)
T ss_dssp             TCSEEEEECGGGGSSC
T ss_pred             CCCEEEEeCcccccCC
Confidence            8999999999887653

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=82.81  E-value=0.71  Score=40.70  Aligned_cols=34  Identities=9%  Similarity=0.226  Sum_probs=30.9

Q ss_pred             ecCCccchhhhhHHHHhhhcceeeccCcchhhhh
Q psy12535         47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA   80 (209)
Q Consensus        47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~   80 (209)
                      .||.++++|++.|...+.+++++|.|+|...++.
T Consensus       109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~  142 (338)
T 4a1f_A          109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQ  142 (338)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHH
Confidence            6899999999999999999999999999876664

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=81.55  E-value=0.084  Score=47.94  Aligned_cols=26  Identities=23%  Similarity=0.130  Sum_probs=22.6

Q ss_pred             cceecCCccchhhhhHHHHhhhcceeec
Q psy12535         44 KGVSLSGGQRARISLARAVYKRADVYLL   71 (209)
Q Consensus        44 ~g~~LSgGqrQRlaiARal~~~p~illL   71 (209)
                      ....|||||+||  |||+++.+|+++.-
T Consensus       290 ~~~~LSgg~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          290 ISSSLLGVLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred             HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence            345799999999  99999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-29
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-28
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-28
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	6e-25
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	3e-24
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	6e-22
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	3e-10
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-09
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-09
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	5e-09
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-09
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	6e-08
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-07
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-07
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	5e-07
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	6e-07
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	4e-06
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-05
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-04
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-04
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-04

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  108 bits (271), Expect = 1e-29
 Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 34/176 (19%)

Query: 1   MGPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
              I       +         ++    +   ++ +G  T++G+ GV LSGGQR RI++AR
Sbjct: 106 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165

Query: 61  AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
           A+ + + + +LD+  SA+D    + +    +  L                          
Sbjct: 166 ALLRDSPILILDEATSALDTESERAIQA-ALDELQ------------------------- 199

Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
                   K +T ++I H++  +   D ++++E G +   GT ++LLA    + QL
Sbjct: 200 --------KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 34/170 (20%)

Query: 10  PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVY 69
           P   D       K+    +    LP G  T VG++GV LSGGQ+ R+S+AR       + 
Sbjct: 117 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 176

Query: 70  LLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK 129
           +LD+  SA+D      + E  +  L                                  K
Sbjct: 177 ILDEATSALDLESESIIQE-ALDVLS---------------------------------K 202

Query: 130 EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179
           ++T +++ H++  +TH D ++++E G +   GT  +L+A    +  L   
Sbjct: 203 DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 252

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 2e-28
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 33/182 (18%)

Query: 8   MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
            G  + +   + VVK C L++D  +    D T++G+ GV+LSGGQRARISLARAVYK AD
Sbjct: 119 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178

Query: 68  VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
           +YLLD P   +D    + +FE C+  L                                 
Sbjct: 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMAN------------------------------ 208

Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
              KT +L+T ++++L   D +++L +GS   +GT ++L +   DF+  L   +  D+  
Sbjct: 209 ---KTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFT 265

Query: 188 NE 189
            E
Sbjct: 266 EE 267

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (238), Expect = 6e-25
 Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 32/176 (18%)

Query: 4   ILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVY 63
           I   +                      + LP G  T V + G  LSGGQR  ++LARA+ 
Sbjct: 108 IAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167

Query: 64  KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123
           ++  V +LDD  SA+DA+    + +                                 L 
Sbjct: 168 RKPCVLILDDATSALDANSQLQVEQ--------------------------------LLY 195

Query: 124 RTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179
            +     ++V+LIT  +  +   DH++ LE G++   GT  QL+     +  ++ A
Sbjct: 196 ESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQA 251

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 93.8 bits (233), Expect = 3e-24
 Identities = 32/174 (18%), Positives = 73/174 (41%), Gaps = 34/174 (19%)

Query: 4   ILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVY 63
           +   +   + D +  +V+ +   +     +P    T VG++GV +SGGQR R+++ARA  
Sbjct: 96  LTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL 155

Query: 64  KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123
           +   + +LD+  +++D+     + +                                   
Sbjct: 156 RNPKILMLDEATASLDSESESMVQKALD-------------------------------- 183

Query: 124 RTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
             S +K +T ++I H++  +   D +  +EKG +   G   +L+A+   + + +
Sbjct: 184 --SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 87.7 bits (217), Expect = 6e-22
 Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 35/173 (20%)

Query: 5   LAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYK 64
           ++   PG          K+    +  ++L  G  T+VG++G  LSGGQR RI++ARA+  
Sbjct: 97  ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156

Query: 65  RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124
              + + D+  SA+D      +  +                                   
Sbjct: 157 NPKILIFDEATSALDYESEHVIMRNM---------------------------------- 182

Query: 125 TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA-SGLDFTQL 176
               K +TV++I H++  + + D ++++EKG +   G   +LL+     ++ L
Sbjct: 183 HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 55.6 bits (134), Expect = 3e-10
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 33/123 (26%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQR R+++ARA+    DV L+D+PLS +DA +   +  +                 
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE----------------- 178

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
                          + +     + T + +TH       + D + ++ +G +   G+ T+
Sbjct: 179 ---------------IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 223

Query: 166 LLA 168
           +  
Sbjct: 224 VYL 226

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 33/123 (26%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQR R++L RA+ ++  V+L+D+PLS +DA +   +  +                 
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELK--------------- 183

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
                            +       T + +TH       + D + ++ +G ++  G+  +
Sbjct: 184 -----------------KLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226

Query: 166 LLA 168
           +  
Sbjct: 227 VYD 229

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 34/124 (27%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           +LSGG++  +++ RA+  R  + ++D+P   +   +      + I  ++           
Sbjct: 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL-VSEVFEVIQKINQ---------- 187

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQ 165
                                 +  T++L+       L    +  +LE G +   G  ++
Sbjct: 188 ----------------------EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE 225

Query: 166 LLAS 169
           LL +
Sbjct: 226 LLDN 229

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 32/116 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGGQ+ R+++ARA+     + L D P  A+D+  G+ + +  +  L+            
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLN------------ 192

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTT 163
                  G               KTV+++TH I      + ++ L+ G VE     
Sbjct: 193 ----EEDG---------------KTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 52.5 bits (126), Expect = 5e-09
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 34/124 (27%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
            LSGGQ+ R+S+ARA+    DV L D+P SA+D  +   +          G         
Sbjct: 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG--------- 199

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
                                   KT++++TH++ +  HV  HV+ L +G +E  G   Q
Sbjct: 200 ------------------------KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235

Query: 166 LLAS 169
           +  +
Sbjct: 236 VFGN 239

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 36/182 (19%)

Query: 1   MGPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPS--GDRTLVGDKGVSLSGGQRARISL 58
           +G I     P +     + + K   + E   ++        L   K   LSGGQ   + +
Sbjct: 102 IGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 161

Query: 59  ARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118
            RA+     + ++D+P++ V   +   +F + +  L                        
Sbjct: 162 GRALMTNPKMIVMDEPIAGVAPGLAHDIF-NHVLELKA---------------------- 198

Query: 119 ALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
                     K  T ++I H++   L ++DH+ ++  G + A G   + + + L   +++
Sbjct: 199 ----------KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVV 248

Query: 178 DA 179
           + 
Sbjct: 249 EI 250

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 33/124 (26%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           +LSGGQ+ R+++ARA+     V L D+  SA+D    + + E               +  
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL-------------KDI 186

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
               G                    T++LITH++  +  + D V ++  G +    T ++
Sbjct: 187 NRRLG-------------------LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 227

Query: 166 LLAS 169
           + + 
Sbjct: 228 VFSH 231

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 33/123 (26%)

Query: 47  SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
           +LSGGQR R+++ R +     V+LLD+PLS +DA +   +  +                 
Sbjct: 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR---------- 179

Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
                                   +T++ +TH       + D +++L+ G V   G   +
Sbjct: 180 ----------------------LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 217

Query: 166 LLA 168
           L  
Sbjct: 218 LYH 220

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 41/139 (29%)

Query: 39  TLVGDKGVSLSGGQRARISLARAVYKRA-------DVYLLDDPLSAVDAHVGKHLFEDCI 91
             +G     LSGG+  R+ LA  V +          + LLD+P++++D      L +   
Sbjct: 117 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK--- 173

Query: 92  TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVM 150
                                         ++     +   +++ +H + + L H     
Sbjct: 174 ------------------------------ILSALCQQGLAIVMSSHDLNHTLRHAHRAW 203

Query: 151 LLEKGSVEAFGTTTQLLAS 169
           LL+ G + A G   ++L  
Sbjct: 204 LLKGGKMLASGRREEVLTP 222

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 34/127 (26%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD 102
           D+  + S G   ++ +ARA+     + +LD+P S +D    + + +  +           
Sbjct: 129 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQ------ 181

Query: 103 SRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161
                                     +  T+++ +H +  +  + D + L+  G++   G
Sbjct: 182 --------------------------EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG 215

Query: 162 TTTQLLA 168
           T  +L  
Sbjct: 216 TVEELKE 222

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 38/167 (22%)

Query: 10  PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVY 69
                    R  +V  + E        DR     K   LSGG+R R++LARA+  +  + 
Sbjct: 94  GLRNVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRVALARALVIQPRLL 148

Query: 70  LLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK 129
           LLD+PLSAVD      L E+                                        
Sbjct: 149 LLDEPLSAVDLKTKGVLMEELR--------------------------------FVQREF 176

Query: 130 EKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQLLASGLDFTQ 175
           +  ++ +TH +     + D V ++  G +   G   +L ++      
Sbjct: 177 DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 33/122 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSGG++ R++LARA+     + LLD+PLSA+D    ++  E                   
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS---------------- 171

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                                 + TV+ ITH       + D + ++  G +   G   ++
Sbjct: 172 ----------------VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215

Query: 167 LA 168
             
Sbjct: 216 FE 217

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 43  DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
            K   LS G   R+ LA  +   A++Y+LDDP+ A+D      + +
Sbjct: 121 KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 33/122 (27%)

Query: 48  LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
           LSG Q+ R++LARA+ K   + LLD+P S +DA +                         
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK---------------- 184

Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
                                   T+++++H    +  + D V +L KG +   G    L
Sbjct: 185 ----------------EVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

Query: 167 LA 168
             
Sbjct: 229 YD 230

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.95
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.95
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.94
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.94
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.93
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.93
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.93
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.92
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.72
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.64
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.34
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.88
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.4
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.06
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.86
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	83.99

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.2e-36  Score=261.00  Aligned_cols=135  Identities=26%  Similarity=0.445  Sum_probs=120.9

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      .+.+.+.++++.+++.+++..+|.|++|.+++++.+|||||||||+|||||+++|+|||||||||+||+.++..+++.+ 
T Consensus       117 ~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l-  195 (253)
T d3b60a1         117 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-  195 (253)
T ss_dssp             CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHH-
Confidence            3445566778888999999999999999999999999999999999999999999999999999999999998887743 


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                                      +.. .+++|+|+|||+++.+..||+|++|++|+|++.|++++|+++..
T Consensus       196 --------------------------------~~l-~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~  242 (253)
T d3b60a1         196 --------------------------------DEL-QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG  242 (253)
T ss_dssp             --------------------------------HHH-HTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred             --------------------------------HHh-ccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence                                            222 24889999999999998999999999999999999999999988


Q ss_pred             CchhccCCC
Q psy12535        172 DFTQLLDAP  180 (209)
Q Consensus       172 ~~~~~~~~~  180 (209)
                      .|.++|..+
T Consensus       243 ~y~~l~~~Q  251 (253)
T d3b60a1         243 VYAQLHKMQ  251 (253)
T ss_dssp             SHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            899888654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=8.2e-36  Score=256.38  Aligned_cols=135  Identities=28%  Similarity=0.493  Sum_probs=121.6

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      ..++.+.++++.+++.+++..+|.|++|.+++++.+|||||||||+|||||+++|+|||||||||+||+.+...+++.+.
T Consensus       119 ~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~  198 (255)
T d2hyda1         119 ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD  198 (255)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            44556677888899999999999999999999999999999999999999999999999999999999999888877432


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                                       . ..+++|+|+|||+++.+..||+|++|++|+|++.|++++|+++.+
T Consensus       199 ---------------------------------~-l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~  244 (255)
T d2hyda1         199 ---------------------------------V-LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQG  244 (255)
T ss_dssp             ---------------------------------H-HTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTS
T ss_pred             ---------------------------------H-HhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence                                             2 235789999999999999999999999999999999999999888


Q ss_pred             CchhccCCC
Q psy12535        172 DFTQLLDAP  180 (209)
Q Consensus       172 ~~~~~~~~~  180 (209)
                      .|.++|..+
T Consensus       245 ~y~~l~~~Q  253 (255)
T d2hyda1         245 AYEHLYSIQ  253 (255)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHHc
Confidence            888888765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-35  Score=251.72  Aligned_cols=133  Identities=26%  Similarity=0.463  Sum_probs=117.7

Q ss_pred             CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535         12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI   91 (209)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~   91 (209)
                      ...+.+..+++.+++.+++..+|.|++|.+++.|.+|||||||||+|||||+++|+|||||||||+||+.+...+++.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~  183 (241)
T d2pmka1         104 MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH  183 (241)
T ss_dssp             CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHH
Confidence            44456667788889999999999999999999999999999999999999999999999999999999999998877432


Q ss_pred             hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535         92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                                                       .. .+++|+|+|||+++.+..||+|++|++|+|++.|++++|+++..
T Consensus       184 ---------------------------------~l-~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~  229 (241)
T d2pmka1         184 ---------------------------------KI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE  229 (241)
T ss_dssp             ---------------------------------HH-HTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTT
T ss_pred             ---------------------------------HH-hCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence                                             21 25889999999999998999999999999999999999997754


Q ss_pred             -CchhccC
Q psy12535        172 -DFTQLLD  178 (209)
Q Consensus       172 -~~~~~~~  178 (209)
                       .|.++|+
T Consensus       230 ~~y~~l~~  237 (241)
T d2pmka1         230 SLYSYLYQ  237 (241)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence             5777764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.6e-35  Score=250.41  Aligned_cols=132  Identities=23%  Similarity=0.467  Sum_probs=116.9

Q ss_pred             CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535         15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL   94 (209)
Q Consensus        15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~   94 (209)
                      +...++++.+.+.+++..+|.+++|.++++|.+|||||||||+|||||+++|+|||||||||+||+.+...+++.+    
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l----  182 (242)
T d1mv5a_         107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL----  182 (242)
T ss_dssp             HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH----
T ss_pred             hhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH----
Confidence            3445566777788899999999999999999999999999999999999999999999999999999988887642    


Q ss_pred             ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCch
Q psy12535         95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT  174 (209)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~  174 (209)
                                                   +.. .+++|+|+|||+++.+..||+|++|++|+|++.|++++|+++...|.
T Consensus       183 -----------------------------~~l-~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~  232 (242)
T d1mv5a_         183 -----------------------------DSL-MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYA  232 (242)
T ss_dssp             -----------------------------HHH-HTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHH
T ss_pred             -----------------------------HHH-cCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHH
Confidence                                         222 25899999999999998899999999999999999999999887788


Q ss_pred             hccCCC
Q psy12535        175 QLLDAP  180 (209)
Q Consensus       175 ~~~~~~  180 (209)
                      +++..+
T Consensus       233 ~l~~~Q  238 (242)
T d1mv5a_         233 KYVSEQ  238 (242)
T ss_dssp             HHHHCC
T ss_pred             HHHHHH
Confidence            887654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-35  Score=250.45  Aligned_cols=127  Identities=30%  Similarity=0.426  Sum_probs=113.0

Q ss_pred             ceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCC
Q psy12535         19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGV   98 (209)
Q Consensus        19 ~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~   98 (209)
                      .+.+.+++.+++..+|.|++|.+++.+.+|||||||||+|||||+++|+|||||||||+||+.++..+++.+.       
T Consensus       123 ~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~-------  195 (251)
T d1jj7a_         123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLY-------  195 (251)
T ss_dssp             HHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHH-------
Confidence            3445567788999999999999999999999999999999999999999999999999999999888877432       


Q ss_pred             CCccccchhhhhcccccccchhhhhhhhc-cccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhcc
Q psy12535         99 PRFDSRWGRSFFGSALGVRGALSLVRTSF-LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL  177 (209)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~  177 (209)
                                                +.. ..++|+|+|||+++.+..||+|++|++|+|++.|++++|+++...|.++|
T Consensus       196 --------------------------~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l~  249 (251)
T d1jj7a_         196 --------------------------ESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV  249 (251)
T ss_dssp             --------------------------TCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred             --------------------------HHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHh
Confidence                                      222 24889999999999998899999999999999999999999888888887


Q ss_pred             C
Q psy12535        178 D  178 (209)
Q Consensus       178 ~  178 (209)
                      +
T Consensus       250 ~  250 (251)
T d1jj7a_         250 Q  250 (251)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.4e-33  Score=242.68  Aligned_cols=134  Identities=40%  Similarity=0.712  Sum_probs=115.6

Q ss_pred             CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      ......+..+++.|.+..++..+|.+++|.+++.+.+|||||||||+|||||+++|+|||||||||+||+.+...+++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~  201 (281)
T d1r0wa_         122 SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC  201 (281)
T ss_dssp             CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHC
T ss_pred             cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHH
Confidence            33344556677778888899999999999999999999999999999999999999999999999999999888887754


Q ss_pred             hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535         91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                      +..                                 ..+++|+|+|||+++.+..||||++|++|+|++.|++++|.+..
T Consensus       202 ~~~---------------------------------~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~  248 (281)
T d1r0wa_         202 VCK---------------------------------LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR  248 (281)
T ss_dssp             CCC---------------------------------CTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC
T ss_pred             HHH---------------------------------hhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccC
Confidence            322                                 23588999999999999889999999999999999999998766


Q ss_pred             CCchhcc
Q psy12535        171 LDFTQLL  177 (209)
Q Consensus       171 ~~~~~~~  177 (209)
                      ..|...+
T Consensus       249 ~~~~~~~  255 (281)
T d1r0wa_         249 PDFSSKL  255 (281)
T ss_dssp             HHHHHHH
T ss_pred             cHHHHHH
Confidence            6665443

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=3.5e-30  Score=219.37  Aligned_cols=102  Identities=26%  Similarity=0.414  Sum_probs=87.2

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      ++...+..+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.                           
T Consensus       126 l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~l---------------------------  178 (239)
T d1v43a3         126 IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE---------------------------  178 (239)
T ss_dssp             CGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH---------------------------
T ss_pred             ChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHH---------------------------
Confidence            34445556679999999999999999999999999999999999988888763                           


Q ss_pred             cchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        117 RGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                            +++..+ .|+|+|+|||+++.+.. ||||++|++|+|++.|++++++++..
T Consensus       179 ------l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~  229 (239)
T d1v43a3         179 ------IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN  229 (239)
T ss_dssp             ------HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred             ------HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence                  333333 38999999999999865 89999999999999999999987753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.5e-30  Score=218.44  Aligned_cols=101  Identities=28%  Similarity=0.447  Sum_probs=71.8

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      .......+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.+                           
T Consensus       121 ~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l---------------------------  173 (232)
T d2awna2         121 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI---------------------------  173 (232)
T ss_dssp             -------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH---------------------------
T ss_pred             hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH---------------------------
Confidence            34455566799999999999999999999999999999999999988887643                           


Q ss_pred             chhhhhhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        118 GALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       118 ~~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                            ++.. ..|+|||+|||+++.+.. ||||++|++|+|++.|++++++++..
T Consensus       174 ------~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~  223 (232)
T d2awna2         174 ------SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA  223 (232)
T ss_dssp             ------HHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             ------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCC
Confidence                  2322 348999999999998765 89999999999999999999987643

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=2.7e-30  Score=220.37  Aligned_cols=101  Identities=27%  Similarity=0.374  Sum_probs=86.1

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      .......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.                            
T Consensus       131 ~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~----------------------------  182 (242)
T d1oxxk2         131 HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL----------------------------  182 (242)
T ss_dssp             GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH----------------------------
T ss_pred             HhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHH----------------------------
Confidence            3344555669999999999999999999999999999999999998888763                            


Q ss_pred             chhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccC
Q psy12535        118 GALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       118 ~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                           +++... .|.|+|+|||+++.+. .||||++|++|+|++.|++++++++..
T Consensus       183 -----i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~  233 (242)
T d1oxxk2         183 -----VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV  233 (242)
T ss_dssp             -----HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             -----HHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence                 333322 4899999999999875 589999999999999999999987653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2e-30  Score=220.90  Aligned_cols=96  Identities=26%  Similarity=0.434  Sum_probs=83.9

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.                                
T Consensus       135 ~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~--------------------------------  182 (240)
T d3dhwc1         135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL--------------------------------  182 (240)
T ss_dssp             SSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH--------------------------------
T ss_pred             hCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHH--------------------------------
Confidence            334459999999999999999999999999999999999999888773                                


Q ss_pred             hhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        122 LVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       122 ~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                       +++...+ |+|||+|||+++.+.. ||||++|++|+|++.|++++++++.
T Consensus       183 -l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P  232 (240)
T d3dhwc1         183 -LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP  232 (240)
T ss_dssp             -HHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSS
T ss_pred             -HHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence             3333333 8999999999999875 8999999999999999999998764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.95  E-value=1.7e-29  Score=215.23  Aligned_cols=99  Identities=26%  Similarity=0.478  Sum_probs=85.4

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.                              
T Consensus       132 ~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~------------------------------  181 (240)
T d1g2912         132 LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE------------------------------  181 (240)
T ss_dssp             GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH------------------------------
T ss_pred             HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHH------------------------------
Confidence            33455679999999999999999999999999999999999988888763                              


Q ss_pred             hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                         +++... .|+|||+|||+++.+.. ||||++|++|+|++.|++++++.+..
T Consensus       182 ---l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~  232 (240)
T d1g2912         182 ---LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA  232 (240)
T ss_dssp             ---HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             ---HHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence               333333 38999999999998765 89999999999999999999987643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.94  E-value=1.3e-28  Score=208.32  Aligned_cols=101  Identities=27%  Similarity=0.440  Sum_probs=86.5

Q ss_pred             ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535         38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR  117 (209)
Q Consensus        38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (209)
                      .......+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.                            
T Consensus       118 ~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~----------------------------  169 (229)
T d3d31a2         118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM----------------------------  169 (229)
T ss_dssp             TTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHH----------------------------
T ss_pred             hhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHH----------------------------
Confidence            3344566779999999999999999999999999999999999998888763                            


Q ss_pred             chhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        118 GALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       118 ~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                           ++...+ .+.|||+|||+++.+.. ||||++|++|+|++.|++++++++..
T Consensus       170 -----l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~  220 (229)
T d3d31a2         170 -----LSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV  220 (229)
T ss_dssp             -----HHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred             -----HHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence                 333332 48899999999998765 89999999999999999999987643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=3.8e-29  Score=212.98  Aligned_cols=103  Identities=31%  Similarity=0.446  Sum_probs=88.0

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      |+.......+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.+                         
T Consensus       115 gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i-------------------------  169 (240)
T d2onka1         115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-------------------------  169 (240)
T ss_dssp             TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH-------------------------
T ss_pred             CcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHH-------------------------
Confidence            4444556677799999999999999999999999999999999999988887743                         


Q ss_pred             ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                              +.... .+.|||+|||+++.+.. ||||++|++|+|++.|+++++++...
T Consensus       170 --------~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~  219 (240)
T d2onka1         170 --------RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKN  219 (240)
T ss_dssp             --------HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred             --------HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCC
Confidence                    23233 38899999999998765 89999999999999999999987543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=6.7e-28  Score=206.96  Aligned_cols=97  Identities=33%  Similarity=0.553  Sum_probs=85.6

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ...+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.                                
T Consensus       144 ~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l--------------------------------  191 (258)
T d1b0ua_         144 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI--------------------------------  191 (258)
T ss_dssp             TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH--------------------------------
T ss_pred             ccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHh--------------------------------
Confidence            345679999999999999999999999999999999999998888763                                


Q ss_pred             hhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL  171 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~  171 (209)
                       +++...+|+|||+||||++.+.. ||||++|++|+|++.|++++++.+..
T Consensus       192 -l~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~P~  241 (258)
T d1b0ua_         192 -MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQ  241 (258)
T ss_dssp             -HHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred             -hhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence             33444568999999999999765 89999999999999999999988753

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=5e-28  Score=204.84  Aligned_cols=90  Identities=29%  Similarity=0.468  Sum_probs=78.8

Q ss_pred             ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ....+.+|||||||||+|||||+.+|+|||||||||+||+.++..+++.                               
T Consensus       139 ~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-------------------------------  187 (230)
T d1l2ta_         139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-------------------------------  187 (230)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-------------------------------
T ss_pred             hcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHH-------------------------------
Confidence            3456679999999999999999999999999999999999999888773                               


Q ss_pred             hhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchh
Q psy12535        121 SLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTT  163 (209)
Q Consensus       121 ~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~  163 (209)
                        +++... .|+|+|+|||+++.++.||||++|++|+|+++|++
T Consensus       188 --l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         188 --LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             --HHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             --HHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence              333333 48999999999998877999999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.93  E-value=4.9e-28  Score=205.70  Aligned_cols=97  Identities=21%  Similarity=0.370  Sum_probs=85.3

Q ss_pred             eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535         40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA  119 (209)
Q Consensus        40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (209)
                      .....+.+|||||||||+|||||+.+|+||||||||+|||+.+...+++                               
T Consensus       132 ~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~-------------------------------  180 (240)
T d1ji0a_         132 RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE-------------------------------  180 (240)
T ss_dssp             TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH-------------------------------
T ss_pred             HHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHH-------------------------------
Confidence            3445667999999999999999999999999999999999998888877                               


Q ss_pred             hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                        +++++..+|+|||+|||+++.+. .||||++|++|+|++.|+++++.++
T Consensus       181 --~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  229 (240)
T d1ji0a_         181 --VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             --HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             --HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence              34444456899999999999875 5899999999999999999999865

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=1.9e-27  Score=203.35  Aligned_cols=100  Identities=23%  Similarity=0.401  Sum_probs=86.3

Q ss_pred             CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535         37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV  116 (209)
Q Consensus        37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (209)
                      +.......+.+|||||||||+|||||+.+|+||||||||+|||+.....+++.                           
T Consensus       140 l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~---------------------------  192 (254)
T d1g6ha_         140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH---------------------------  192 (254)
T ss_dssp             CGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH---------------------------
T ss_pred             cchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHH---------------------------
Confidence            34445567789999999999999999999999999999999999988888763                           


Q ss_pred             cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                            +++...+|+|||+|||+++.+. .||||++|++|+|+++|+++|+.++
T Consensus       193 ------i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~~  240 (254)
T d1g6ha_         193 ------VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN  240 (254)
T ss_dssp             ------HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHHH
T ss_pred             ------HHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhhc
Confidence                  3333456899999999999875 5899999999999999999987653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=4.1e-27  Score=199.83  Aligned_cols=102  Identities=20%  Similarity=0.343  Sum_probs=88.5

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG  115 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (209)
                      ++......++.+||||||||++|||||+.+|+||||||||+|||+.+...+++                           
T Consensus       122 ~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~---------------------------  174 (238)
T d1vpla_         122 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK---------------------------  174 (238)
T ss_dssp             CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH---------------------------
T ss_pred             CCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH---------------------------
Confidence            34455667788999999999999999999999999999999999988877765                           


Q ss_pred             ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535        116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG  170 (209)
Q Consensus       116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~  170 (209)
                            +++....+|+|||++||+++.+.. ||||++|++|+|++.|+++++..+.
T Consensus       175 ------~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~  224 (238)
T d1vpla_         175 ------ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY  224 (238)
T ss_dssp             ------HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred             ------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence                  344444568999999999999875 8999999999999999999998653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=8.1e-27  Score=196.81  Aligned_cols=101  Identities=23%  Similarity=0.388  Sum_probs=86.3

Q ss_pred             CCceeecccceecCCccchhhhhHHHHhh-------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535         36 GDRTLVGDKGVSLSGGQRARISLARAVYK-------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS  108 (209)
Q Consensus        36 g~~t~vg~~g~~LSgGqrQRlaiARal~~-------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (209)
                      +++..++..+.+|||||||||+|||||++       +|+||||||||+|||+..+..+.+                    
T Consensus       114 ~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~--------------------  173 (231)
T d1l7vc_         114 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK--------------------  173 (231)
T ss_dssp             TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHH--------------------
T ss_pred             CCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHH--------------------
Confidence            34455677788999999999999999997       779999999999999988877755                    


Q ss_pred             hhcccccccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535        109 FFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS  169 (209)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~  169 (209)
                                   +++....+|+|||++||+++.+. .||||++|++|+|++.|++++++.+
T Consensus       174 -------------~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~  222 (231)
T d1l7vc_         174 -------------ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP  222 (231)
T ss_dssp             -------------HHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred             -------------HHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence                         33344456999999999999865 5899999999999999999999754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.72  E-value=4.6e-19  Score=145.76  Aligned_cols=49  Identities=31%  Similarity=0.496  Sum_probs=44.0

Q ss_pred             cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535         42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC   90 (209)
Q Consensus        42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~   90 (209)
                      .++..+||||||||++|||||+.+|+||||||||+|||+.++..+++.+
T Consensus       120 ~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l  168 (200)
T d1sgwa_         120 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI  168 (200)
T ss_dssp             TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred             ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999888887643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=4.1e-10  Score=96.88  Aligned_cols=74  Identities=19%  Similarity=0.274  Sum_probs=57.5

Q ss_pred             eecCCccchhhhhHHHH----hhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535         46 VSLSGGQRARISLARAV----YKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS  121 (209)
Q Consensus        46 ~~LSgGqrQRlaiARal----~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (209)
                      ..||||||.+++||-.+    +.++++++||||+++||+.....+.+.                                
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~--------------------------------  378 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY--------------------------------  378 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH--------------------------------
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHH--------------------------------
Confidence            57899999998877544    366789999999999999887777663                                


Q ss_pred             hhhhhccccceeeeeeeehheecccceEEEe
Q psy12535        122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLL  152 (209)
Q Consensus       122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L  152 (209)
                       +......+.-+|+|||+...+..+|+++.+
T Consensus       379 -l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         379 -IRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             -HHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             -HHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence             222222344699999999999999987755

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.40  E-value=1.8e-08  Score=77.08  Aligned_cols=85  Identities=9%  Similarity=-0.092  Sum_probs=63.0

Q ss_pred             ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535         43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL  122 (209)
Q Consensus        43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (209)
                      .....+|+|++++.++++++..+|+++++|||....+.  ...+.+.+..                              
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~------------------------------  124 (178)
T d1ye8a1          77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQ------------------------------  124 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHH------------------------------
T ss_pred             cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHH------------------------------
Confidence            33456899999999999999999999999998655443  2222222111                              


Q ss_pred             hhhhccccceeeeeeeehheecccceEEEeeccceeecc
Q psy12535        123 VRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG  161 (209)
Q Consensus       123 ~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G  161 (209)
                        .....+.|+|+++|+......++++..+.+|+++..+
T Consensus       125 --~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~  161 (178)
T d1ye8a1         125 --IMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELT  161 (178)
T ss_dssp             --HHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred             --HhccCCCEEEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence              1122478999999988777788999999999997654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=1.1e-06  Score=72.67  Aligned_cols=77  Identities=25%  Similarity=0.293  Sum_probs=59.4

Q ss_pred             ceecCCccchhhhhHHHH----hhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535         45 GVSLSGGQRARISLARAV----YKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL  120 (209)
Q Consensus        45 g~~LSgGqrQRlaiARal----~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (209)
                      ...+|+|+|+.+.++..+    ...+.++++|||-++|+|...+.+.+.+                              
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l------------------------------  266 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLL------------------------------  266 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHH------------------------------
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHH------------------------------
Confidence            457899999998877754    3557899999999999998887776632                              


Q ss_pred             hhhhhhccccceeeeeeeehheecccceEEE--eecc
Q psy12535        121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVML--LEKG  155 (209)
Q Consensus       121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~--L~~G  155 (209)
                         +.. .++.-||++||.+..+..+|+++.  +++|
T Consensus       267 ---~~~-~~~~QviitTHsp~~~~~~d~~~~v~~~~g  299 (308)
T d1e69a_         267 ---KEN-SKHTQFIVITHNKIVMEAADLLHGVTMVNG  299 (308)
T ss_dssp             ---HHH-TTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred             ---HHh-ccCCEEEEEECCHHHHHhcccEEEEEEeCC
Confidence               221 245679999999999999999866  4455

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.99  E-value=0.31  Score=38.51  Aligned_cols=59  Identities=12%  Similarity=0.122  Sum_probs=39.2

Q ss_pred             hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcccccee
Q psy12535         54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTV  133 (209)
Q Consensus        54 QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ti  133 (209)
                      +++.-..-.+.+..++|+||+..|-++.....+...++..                                +...+.++
T Consensus       103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~--------------------------------L~~~~~~~  150 (224)
T d1ewqa2         103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEA--------------------------------LHERRAYT  150 (224)
T ss_dssp             HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHH--------------------------------HHHHTCEE
T ss_pred             HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHH--------------------------------HhhcCcce
Confidence            4443333334566799999999999998776665544332                                23346789


Q ss_pred             eeeeeehheec
Q psy12535        134 MLITHQIQYLT  144 (209)
Q Consensus       134 IvitH~l~~l~  144 (209)
                      +++||..+...
T Consensus       151 i~tTH~~eL~~  161 (224)
T d1ewqa2         151 LFATHYFELTA  161 (224)
T ss_dssp             EEECCCHHHHT
T ss_pred             EEeeechhhhh
Confidence            99999766543