Psyllid ID: psy12544

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MFNILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDRGNCNC
Secondary Structure (PSIPRED)
cEEEccccccccccccccccccccccHHHHccccccEEEEEEEEccccccccccccccccccccccccEEEEccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEccccccccccccccEEEEccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccHEEEEcccccEcccccHHHHHcccccEEEEEEEEccccccccEcccccccccccHHHHEEEEccEEEEccccccEEEEEccccEEEEHHHHccccccccEccccccccccHHHHHEEEEHHHcccccccc
Coil and Loop (DISEMBL)
mfnilrggnsadttpdpgkmvkgmggamdlvaapstKVVVTMEhntrdgghkilpecslpltgkqCVDLIITEKgkmvkgmggamdlvaapstKVVVTMEhntrdgghkilpecslpltgkqCVDLIITEkrfdrgncnc
Flexible Loop (DISEMBL)
mfnilrggnsadttpdpgKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGghkilpecslpltgKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGghkilpecslpltgKQCVDLIITekrfdrgncnc
Low Complexity Region (SEG)
MFNILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEkgkmvkgmggamDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDRGNCNC
Disordered region (IsUnstruct)
*****************************LVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRF*******
Disordered Region (DISOPRED)
MFNILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDRGN***
Disordered Region (DISEMBL)
MFNILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDRGNCNC
Disordered Region (DISPRO)
*FNILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDRGNCNC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFNILRGGNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDRGNCNC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q9D0K2	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.421	0.113	0.728	4e-19
B2GV06	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.421	0.113	0.728	5e-19
P55809	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.414	0.111	0.711	2e-18
Q29551	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.414	0.111	0.694	3e-18
Q5XIJ9	520	Succinyl-CoA:3-ketoacid c	no	N/A	0.421	0.113	0.711	3e-16
Q9ESL0	520	Succinyl-CoA:3-ketoacid c	no	N/A	0.421	0.113	0.694	3e-16
Q9JJN4	520	Succinyl-CoA:3-ketoacid c	no	N/A	0.421	0.113	0.694	4e-16
Q9BYC2	517	Succinyl-CoA:3-ketoacid c	no	N/A	0.421	0.114	0.661	7e-16
B0RVK3	213	Succinyl-CoA:3-ketoacid c	yes	N/A	0.4	0.262	0.701	2e-14
P0C7I8	213	Succinyl-CoA:3-ketoacid c	yes	N/A	0.4	0.262	0.701	2e-14

>sp|Q9D0K2|SCOT1_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Mus musculus GN=Oxct1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 51/59 (86%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEKG
Sbjct: 416 PGKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKG 474

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 8EC: .EC: 3EC: .EC: 5

>sp|B2GV06|SCOT1_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Rattus norvegicus GN=Oxct1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 51/59 (86%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEKG
Sbjct: 416 PGKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKG 474

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|P55809|SCOT1_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Homo sapiens GN=OXCT1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 50/59 (84%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK 
Sbjct: 416 PGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKA 474

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q29551|SCOT1_PIG Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Sus scrofa GN=OXCT1 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK 
Sbjct: 416 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKA 474

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q5XIJ9|SCO2A_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial OS=Rattus norvegicus GN=Oxct2a PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 48/59 (81%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGK VKGMGGAMDLV++  TKVVVTMEH T+    KIL +C++PLTGK CVDLIITEK 
Sbjct: 414 PGKKVKGMGGAMDLVSSKKTKVVVTMEHCTKTKQPKILEKCTMPLTGKSCVDLIITEKA 472

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (By similarity). Probably play and important roles in the energy metabolism of spermatozoa.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9ESL0|SCO2B_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2B, mitochondrial OS=Mus musculus GN=Oxct2b PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 49/59 (83%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGK VKGMGGAMDLV++  T+VVVTMEH T+    KIL +C++PLTGK+CVDLIITEK 
Sbjct: 414 PGKKVKGMGGAMDLVSSKKTRVVVTMEHCTKTKQPKILKKCTMPLTGKRCVDLIITEKA 472

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (By similarity). Probably play and important roles in the energy metabolism of spermatozoa.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9JJN4|SCO2A_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial OS=Mus musculus GN=Oxct2a PE=2 SV=2

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 49/59 (83%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGK VKGMGGAMDLV++  T+VVVTMEH T+    KIL +C++PLTGK+CVDLIITEK 
Sbjct: 414 PGKKVKGMGGAMDLVSSKKTRVVVTMEHCTKTKQPKILKKCTMPLTGKRCVDLIITEKA 472

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (By similarity). Probably play and important roles in the energy metabolism of spermatozoa.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial OS=Homo sapiens GN=OXCT2 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 49/59 (83%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGK VKGMGGAMDLV++  T+VVVTM+H T+D   KI+ +C++PLTGK+CVD IITEK 
Sbjct: 413 PGKKVKGMGGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEKA 471

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|B0RVK3|SCOB_XANCB Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B OS=Xanthomonas campestris pv. campestris (strain B100) GN=lpsJ PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGKMVKGMGGAMDLVA    +VVV MEH  +DG HKILP+C LPLTG   VD IIT+
Sbjct: 119 PGKMVKGMGGAMDLVAGVK-RVVVLMEHVAKDGTHKILPQCDLPLTGVGVVDRIITD 174

Xanthomonas campestris pv. campestris (strain B100) (taxid: 509169)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|P0C7I8|SCOB_XANCP Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=lpsJ PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGKMVKGMGGAMDLVA    +VVV MEH  +DG HKILP+C LPLTG   VD IIT+
Sbjct: 119 PGKMVKGMGGAMDLVAGVK-RVVVLMEHVAKDGTHKILPQCDLPLTGVGVVDRIITD 174

Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) (taxid: 190485)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
242013102	517	succinyl-CoA:3-ketoacid-coenzyme A trans	0.414	0.112	0.810	2e-20
357620379	199	putative succinyl-CoA:3-ketoacid-coenzym	0.414	0.291	0.827	3e-20
158295326	524	AGAP006096-PA [Anopheles gambiae str. PE	0.421	0.112	0.762	2e-19
289739689	519	succinyl-CoA alpha-ketoacid-CoA transfer	0.471	0.127	0.764	3e-19
321478252	522	hypothetical protein DAPPUDRAFT_220335 [	0.471	0.126	0.691	4e-19
195016899	517	GH14994 [Drosophila grimshawi] gi|193897	0.471	0.127	0.705	5e-19
449676901	482	PREDICTED: succinyl-CoA:3-ketoacid coenz	0.414	0.120	0.793	9e-19
194746974	516	GF24850 [Drosophila ananassae] gi|190623	0.471	0.127	0.691	1e-18
195439856	514	GK12531 [Drosophila willistoni] gi|19416	0.471	0.128	0.720	2e-18
348517210	524	PREDICTED: succinyl-CoA:3-ketoacid-coenz	0.414	0.110	0.796	2e-18

>gi|242013102|ref|XP_002427254.1| succinyl-CoA:3-ketoacid-coenzyme A transferase 1, putative [Pediculus humanus corporis] gi|212511587|gb|EEB14516.1| succinyl-CoA:3-ketoacid-coenzyme A transferase 1, putative [Pediculus humanus corporis]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 53/58 (91%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 74
           PGK+VKGMGGAMDLVAAP+TKV+VTMEH  +DG HKILP+C LPLTGK CVD+IITEK
Sbjct: 411 PGKLVKGMGGAMDLVAAPNTKVIVTMEHAAKDGSHKILPKCELPLTGKNCVDMIITEK 468

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620379|gb|EHJ72594.1| putative succinyl-CoA:3-ketoacid-coenzyme A transferase 1 [Danaus plexippus]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 53/58 (91%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 74
           PGKMVKGMGGAMDLV+AP TKVVVTMEH  ++G HKILPEC+LPLTGK CVD+IITEK
Sbjct: 92  PGKMVKGMGGAMDLVSAPRTKVVVTMEHAAKNGSHKILPECTLPLTGKNCVDMIITEK 149

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295326|ref|XP_316153.4| AGAP006096-PA [Anopheles gambiae str. PEST] gi|157015983|gb|EAA11282.4| AGAP006096-PA [Anopheles gambiae str. PEST]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 52/59 (88%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGK+VKGMGGAMDLVAAP TKV+VTMEHN +DG HKIL  C+LP+TG+ CVD+IITEK 
Sbjct: 419 PGKLVKGMGGAMDLVAAPGTKVIVTMEHNAKDGSHKILSNCNLPVTGRNCVDMIITEKA 477

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289739689|gb|ADD18592.1| succinyl-CoA alpha-ketoacid-CoA transferase [Glossina morsitans morsitans]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 56/68 (82%), Gaps = 2/68 (2%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG- 75
           PGK+VKGMGGAMDLVAAP TKVVV+MEHN RDG  KIL  CSLPLTGK  VDLIITEK  
Sbjct: 415 PGKLVKGMGGAMDLVAAPGTKVVVSMEHNARDGSSKILESCSLPLTGKGVVDLIITEKAV 474

Query: 76  -KMVKGMG 82
            K+ KG+G
Sbjct: 475 FKVDKGVG 482

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478252|gb|EFX89209.1| hypothetical protein DAPPUDRAFT_220335 [Daphnia pulex]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 56/68 (82%), Gaps = 2/68 (2%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG- 75
           PG++VKGMGGAMDLVAAP TKVV+ MEH  + G HKIL EC+LPLTGK+CVD+IITEK  
Sbjct: 417 PGRLVKGMGGAMDLVAAPGTKVVIAMEHTAKGGAHKILEECTLPLTGKECVDMIITEKAV 476

Query: 76  -KMVKGMG 82
            ++ KG G
Sbjct: 477 FEVAKGRG 484

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195016899|ref|XP_001984497.1| GH14994 [Drosophila grimshawi] gi|193897979|gb|EDV96845.1| GH14994 [Drosophila grimshawi]

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 2/68 (2%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG- 75
           PGK+VKGMGGAMDLVAAP TKV++TMEHN RDG  KIL  CSLPLTGK+ +DLII+EK  
Sbjct: 413 PGKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILENCSLPLTGKEVIDLIISEKAV 472

Query: 76  -KMVKGMG 82
            ++ KG+G
Sbjct: 473 FQVEKGVG 480

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449676901|ref|XP_004208730.1| PREDICTED: succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial-like [Hydra magnipapillata]

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 52/58 (89%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 74
           PGKMVKGMGGAMDLV++P TKVVVTMEH  + G HKIL EC+LPLTGK+CVD+IITEK
Sbjct: 379 PGKMVKGMGGAMDLVSSPGTKVVVTMEHTAKGGEHKILEECNLPLTGKKCVDMIITEK 436

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|194746974|ref|XP_001955929.1| GF24850 [Drosophila ananassae] gi|190623211|gb|EDV38735.1| GF24850 [Drosophila ananassae]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 57/68 (83%), Gaps = 2/68 (2%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG- 75
           PGK+VKGMGGAMDLVAAP TKV++TMEHN RDG  KIL  CSLPLTGK+ +DLI++EK  
Sbjct: 412 PGKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILDTCSLPLTGKEVIDLIVSEKAV 471

Query: 76  -KMVKGMG 82
            ++ KG+G
Sbjct: 472 FEVEKGVG 479

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195439856|ref|XP_002067775.1| GK12531 [Drosophila willistoni] gi|194163860|gb|EDW78761.1| GK12531 [Drosophila willistoni]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 56/68 (82%), Gaps = 2/68 (2%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG- 75
           PGK+VKGMGGAMDLVAAP TKV++TMEHN RDG  KIL  CSLPLTGK  VDLII+EK  
Sbjct: 410 PGKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILDSCSLPLTGKGVVDLIISEKAV 469

Query: 76  -KMVKGMG 82
            ++ KG+G
Sbjct: 470 FQVEKGVG 477

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348517210|ref|XP_003446128.1| PREDICTED: succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial-like [Oreochromis niloticus]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 51/59 (86%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           PGKMVKGMGGAMDLVA+  TKVVVTMEH+ + G HKIL +CSLPLTGKQCVD IITEK 
Sbjct: 422 PGKMVKGMGGAMDLVASAGTKVVVTMEHSAKGGKHKILDKCSLPLTGKQCVDRIITEKA 480

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
ZFIN|ZDB-GENE-040723-3	525	oxct1a "3-oxoacid CoA transfer	0.407	0.108	0.771	9.4e-19
ZFIN|ZDB-GENE-060929-212	526	oxct1b "3-oxoacid CoA transfer	0.407	0.108	0.771	9.5e-19
FB|FBgn0035298	516	CG1140 [Drosophila melanogaste	0.407	0.110	0.754	1.5e-18
UNIPROTKB|B7Z528	123	OXCT1 "Succinyl-CoA:3-ketoacid	0.407	0.463	0.719	2.8e-18
UNIPROTKB|E9PDW2	334	OXCT1 "Succinyl-CoA:3-ketoacid	0.407	0.170	0.719	2.9e-18
UNIPROTKB|P55809	520	OXCT1 "Succinyl-CoA:3-ketoacid	0.407	0.109	0.719	1.9e-17
UNIPROTKB|Q5R5W4	520	DKFZp459B1627 "Succinyl-CoA:3-	0.407	0.109	0.719	1.9e-17
MGI|MGI:1914291	520	Oxct1 "3-oxoacid CoA transfera	0.407	0.109	0.719	1.9e-17
RGD|1584008	520	Oxct1 "3-oxoacid CoA transfera	0.407	0.109	0.719	1.9e-17
UNIPROTKB|F1N9Z7	506	OXCT1 "Succinyl-CoA:3-ketoacid	0.407	0.112	0.736	2.2e-17

ZFIN|ZDB-GENE-040723-3 oxct1a "3-oxoacid CoA transferase 1a" [Danio rerio (taxid:7955)]

 Score = 233 (87.1 bits), Expect = 9.4e-19, P = 9.4e-19
 Identities = 44/57 (77%), Positives = 50/57 (87%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGKMVKGMGGAMDLVA+  TKVVVTMEH+ + G HKI+ +C+LPLTGKQCVD IITE
Sbjct:   423 PGKMVKGMGGAMDLVASAGTKVVVTMEHSAKGGKHKIMEKCNLPLTGKQCVDRIITE 479

GO:0008152 "metabolic process" evidence=IEA

GO:0008410 "CoA-transferase activity" evidence=IEA

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-060929-212 oxct1b "3-oxoacid CoA transferase 1b" [Danio rerio (taxid:7955)]

 Score = 233 (87.1 bits), Expect = 9.5e-19, P = 9.5e-19
 Identities = 44/57 (77%), Positives = 51/57 (89%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGKMVKGMGGAMDLV++ +TKVVVTMEH+ + G HKIL +C+LPLTGKQCVD IITE
Sbjct:   424 PGKMVKGMGGAMDLVSSDATKVVVTMEHSAKGGKHKILDKCTLPLTGKQCVDRIITE 480

GO:0008152 "metabolic process" evidence=IEA

GO:0008410 "CoA-transferase activity" evidence=IEA

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

FB|FBgn0035298 CG1140 [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 43/57 (75%), Positives = 49/57 (85%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGK+VKGMGGAMDLVAAP TKV++TMEHN RDG  KIL  CSLPLTGK  +D+II+E
Sbjct:   412 PGKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILDTCSLPLTGKGVIDMIISE 468

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0046952 "ketone body catabolic process" evidence=ISS

UNIPROTKB|B7Z528 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct:    19 PGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 75

GO:0005739 "mitochondrion" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0060612 "adipose tissue development" evidence=IEA

GO:0071229 "cellular response to acid" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

UNIPROTKB|E9PDW2 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct:   230 PGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 286

GO:0008410 "CoA-transferase activity" evidence=IEA

UNIPROTKB|P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct:   416 PGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 472

GO:0007420 "brain development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0060612 "adipose tissue development" evidence=IEA

GO:0071229 "cellular response to acid" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IMP;TAS

GO:0005739 "mitochondrion" evidence=IDA;NAS

GO:0042803 "protein homodimerization activity" evidence=NAS

GO:0046950 "cellular ketone body metabolic process" evidence=IMP;TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046952 "ketone body catabolic process" evidence=TAS

UNIPROTKB|Q5R5W4 DKFZp459B1627 "Succinyl-CoA:3-ketoacid-coenzyme A transferase" [Pongo abelii (taxid:9601)]

 Score = 221 (82.9 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct:   416 PGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 472

GO:0005739 "mitochondrion" evidence=ISS

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISS

GO:0046950 "cellular ketone body metabolic process" evidence=ISS

MGI|MGI:1914291 Oxct1 "3-oxoacid CoA transferase 1" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct:   416 PGKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 472

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISO;IDA

GO:0008410 "CoA-transferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=ISO

GO:0042182 "ketone catabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046950 "cellular ketone body metabolic process" evidence=ISO;IDA

GO:0046952 "ketone body catabolic process" evidence=IMP

GO:0071229 "cellular response to acid" evidence=ISO

GO:0071333 "cellular response to glucose stimulus" evidence=ISO

RGD|1584008 Oxct1 "3-oxoacid CoA transferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct:   416 PGKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 472

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0007420 "brain development" evidence=IEP

GO:0007507 "heart development" evidence=IEP

GO:0007584 "response to nutrient" evidence=IEP

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISO;IDA

GO:0008410 "CoA-transferase activity" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0014823 "response to activity" evidence=IEP

GO:0032024 "positive regulation of insulin secretion" evidence=IMP

GO:0042182 "ketone catabolic process" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042594 "response to starvation" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045471 "response to ethanol" evidence=IEP

GO:0046950 "cellular ketone body metabolic process" evidence=IEP;ISO

GO:0046952 "ketone body catabolic process" evidence=IEA;ISO

GO:0060612 "adipose tissue development" evidence=IEP

GO:0071229 "cellular response to acid" evidence=IMP

GO:0071333 "cellular response to glucose stimulus" evidence=IMP

UNIPROTKB|F1N9Z7 OXCT1 "Succinyl-CoA:3-ketoacid-coenzyme A transferase" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 42/57 (73%), Positives = 49/57 (85%)

Query:    17 PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
             PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKIL +C+LPLTGKQCV+ IITE
Sbjct:   413 PGKMVKGMGGAMDLVSSAQTKVVVTMEHSAKGNVHKILEKCNLPLTGKQCVNRIITE 469

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23673	CTFB_CLOAB	2, ., 8, ., 3, ., 9	0.5593	0.4071	0.2579	yes	N/A
Q29551	SCOT1_PIG	2, ., 8, ., 3, ., 5	0.6949	0.4142	0.1115	yes	N/A
B2GV06	SCOT1_RAT	2, ., 8, ., 3, ., 5	0.7288	0.4214	0.1134	yes	N/A
Q9D0K2	SCOT1_MOUSE	2, ., 8, ., 3, ., 5	0.7288	0.4214	0.1134	yes	N/A
P63650	SCOB_MYCTU	2, ., 8, ., 3, ., 5	0.5172	0.5071	0.3256	yes	N/A
P63651	SCOB_MYCBO	2, ., 8, ., 3, ., 5	0.5172	0.5071	0.3256	yes	N/A
O34466	YODR_BACSU	2, ., 8, ., 3, ., -	0.5762	0.4142	0.2672	yes	N/A
P55809	SCOT1_HUMAN	2, ., 8, ., 3, ., 5	0.7118	0.4142	0.1115	yes	N/A
Q09450	SCOT_CAEEL	2, ., 8, ., 3, ., 5	0.6140	0.4071	0.1094	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.8.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	140
TIGR02428	207	TIGR02428, pcaJ_scoB_fam, 3-oxoacid CoA-transferas	1e-25
TIGR02428	207	TIGR02428, pcaJ_scoB_fam, 3-oxoacid CoA-transferas	3e-24
COG2057	225	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA tra	5e-23
COG2057	225	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA tra	2e-21
pfam01144	216	pfam01144, CoA_trans, Coenzyme A transferase	1e-10
pfam01144	216	pfam01144, CoA_trans, Coenzyme A transferase	1e-09
smart00882	212	smart00882, CoA_trans, Coenzyme A transferase	4e-08
smart00882	212	smart00882, CoA_trans, Coenzyme A transferase	4e-07

>gnl|CDD|188219 TIGR02428, pcaJ_scoB_fam, 3-oxoacid CoA-transferase, B subunit

 Score = 95.4 bits (238), Expect = 1e-25
 Identities = 38/61 (62%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGK 76
           PGK+V GMGGAMDLVA    +V+V MEH T+DG  KIL EC+LPLTG +CVD I+TE   
Sbjct: 117 PGKLVPGMGGAMDLVAGAK-RVIVAMEHTTKDGESKILKECTLPLTGAKCVDRIVTELAV 175

Query: 77  M 77
            
Sbjct: 176 F 176

Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144. Length = 207

>gnl|CDD|188219 TIGR02428, pcaJ_scoB_fam, 3-oxoacid CoA-transferase, B subunit

 Score = 92.4 bits (230), Expect = 3e-24
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 1/56 (1%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
           GK+V GMGGAMDLVA    +V+V MEH T+DG  KIL EC+LPLTG +CVD I+TE
Sbjct: 118 GKLVPGMGGAMDLVAGAK-RVIVAMEHTTKDGESKILKECTLPLTGAKCVDRIVTE 172

Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144. Length = 207

>gnl|CDD|224968 COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]

 Score = 89.3 bits (222), Expect = 5e-23
 Identities = 40/73 (54%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGK 76
           PGKMV GMGGAMDLV   + KV+V MEH  + G  KIL EC+LPLTG  CVD +IT+   
Sbjct: 122 PGKMVPGMGGAMDLVTG-AKKVIVVMEHTKKSGVGKILKECTLPLTGNGCVDRVITDLAV 180

Query: 77  MVKGMGGAMDLVA 89
                GG + LV 
Sbjct: 181 FEFDPGGELTLVE 193

Length = 225

>gnl|CDD|224968 COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]

 Score = 85.4 bits (212), Expect = 2e-21
 Identities = 38/65 (58%), Positives = 44/65 (67%), Gaps = 4/65 (6%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK--- 131
           GKMV GMGGAMDLV   + KV+V MEH  + G  KIL EC+LPLTG  CVD +IT+    
Sbjct: 123 GKMVPGMGGAMDLVTG-AKKVIVVMEHTKKSGVGKILKECTLPLTGNGCVDRVITDLAVF 181

Query: 132 RFDRG 136
            FD G
Sbjct: 182 EFDPG 186

Length = 225

>gnl|CDD|201623 pfam01144, CoA_trans, Coenzyme A transferase

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 12  DTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVD--L 69
            T   P K V G GGAM L+       V  ++ +  DG   ++   +        V    
Sbjct: 123 GTYVAPKKRVPGFGGAMYLLEGALRADVALIKASKADGEGNLVFRTTAGNFNGPAVAAAA 182

Query: 70  IITEKG 75
            +T   
Sbjct: 183 KVTILE 188

Length = 216

>gnl|CDD|201623 pfam01144, CoA_trans, Coenzyme A transferase

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 73  EKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVD--LIITE 130
              K V G GGAM L+       V  ++ +  DG   ++   +        V     +T 
Sbjct: 127 APKKRVPGFGGAMYLLEGALRADVALIKASKADGEGNLVFRTTAGNFNGPAVAAAAKVTI 186

Query: 131 K 131
            
Sbjct: 187 L 187

Length = 216

>gnl|CDD|214882 smart00882, CoA_trans, Coenzyme A transferase

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 16  DPGKMVK-GMGGAMDLVAAPSTKVVVTMEHNTRDGG----HKILPECSLPLTGKQ----- 65
           + GK+   GMGGA  LV A    V +   H   + G     K    C LPLT        
Sbjct: 123 EGGKVRPFGMGGAYLLVPAIRPDVALIRAHTADEFGNLVYEKEATSCGLPLTAAAAKKVI 182

Query: 66  CVDLIITEKG 75
                I + G
Sbjct: 183 VQVEEIVDLG 192

Coenzyme A (CoA) transferases belong to an evolutionary conserved family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits. Length = 212

>gnl|CDD|214882 smart00882, CoA_trans, Coenzyme A transferase

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 73  EKGKMVK-GMGGAMDLVAAPSTKVVVTMEHNTRDGG----HKILPECSLPLTGKQ----- 122
           E GK+   GMGGA  LV A    V +   H   + G     K    C LPLT        
Sbjct: 123 EGGKVRPFGMGGAYLLVPAIRPDVALIRAHTADEFGNLVYEKEATSCGLPLTAAAAKKVI 182

Query: 123 CVDLIITEK 131
                I + 
Sbjct: 183 VQVEEIVDL 191

Coenzyme A (CoA) transferases belong to an evolutionary conserved family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits. Length = 212

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
KOG3822|consensus	516		100.0
COG2057	225	AtoA Acyl CoA:acetate/3-ketoacid CoA transferase,	100.0
KOG3822|consensus	516		99.88
COG2057	225	AtoA Acyl CoA:acetate/3-ketoacid CoA transferase,	99.84
TIGR02428	207	pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit	99.78
TIGR02428	207	pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit	99.19
PF13336	154	AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase	97.59
TIGR03458	485	YgfH_subfam succinate CoA transferases. A closely	96.56
PF13336	154	AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase	95.92
COG4670	527	Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid	94.47
TIGR01110	543	mdcA malonate decarboxylase, alpha subunit. This m	94.34
TIGR03458	485	YgfH_subfam succinate CoA transferases. A closely	94.22
TIGR01584	492	citF citrate lyase, alpha subunit. This is a model	93.89
KOG2828|consensus	454		92.07
PF01144	217	CoA_trans: Coenzyme A transferase; InterPro: IPR00	90.22
COG0427	501	ACH1 Acetyl-CoA hydrolase [Energy production and c	89.62
TIGR01110	543	mdcA malonate decarboxylase, alpha subunit. This m	85.14
TIGR01584	492	citF citrate lyase, alpha subunit. This is a model	80.62

>KOG3822|consensus

Probab=100.00  E-value=6.5e-35  Score=254.88  Aligned_cols=92  Identities=51%  Similarity=0.787  Sum_probs=87.8

Q ss_pred             CeeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccc
Q psy12544          1 MFNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQ   65 (140)
Q Consensus         1 ~f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~   65 (140)
                      -|+||||||+|.+               ||||||+|+|||||||||+.++.||||+|||++|||+|||+++|+|||||++
T Consensus       381 SFAMIRGgHvdlT~LGAmqvS~~GDLANWMIPGKlVKGMGGAMDLVss~~trVvvtMeH~ak~~~pKIme~C~lPLTGK~  460 (516)
T KOG3822|consen  381 SFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSPKTRVVVTMEHCAKDNTPKIMEKCTLPLTGKG  460 (516)
T ss_pred             ccceeccCcceeEeeeeeehhhccchhhhcccchhhccccccchhhhCCCceEEEEEeecccCCCchhhhhccccccCcc
Confidence            3999999999987               9999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544         66 CVDLIITEKGKMVKGMGGAMDLVA-APS   92 (140)
Q Consensus        66 ~VNwIVTg~aVfVkG~GGaMdLve-apg   92 (140)
                      |+|+||||+|||++....+++|.| ..+
T Consensus       461 ~v~rIItekAVFdV~~k~gLTLiE~~eg  488 (516)
T KOG3822|consen  461 CVDRIITEKAVFDVDKKKGLTLIELWEG  488 (516)
T ss_pred             hHhhhhhhheeEEeecCCCcEEeeeccC
Confidence            999999999999998888899999 555

>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]

Probab=100.00  E-value=9.1e-34  Score=232.64  Aligned_cols=90  Identities=51%  Similarity=0.832  Sum_probs=85.7

Q ss_pred             eeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccce
Q psy12544          2 FNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQC   66 (140)
Q Consensus         2 f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~   66 (140)
                      |+||||||+|.+               |+||||++|||||||||++|+ |||||+|+|++|+|.+|++++|+||||+.+|
T Consensus        92 f~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~ga-kkvii~m~H~~k~g~~ki~~~ctlplt~~~~  170 (225)
T COG2057          92 FAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGA-KKVIVVMEHTKKSGVGKILKECTLPLTGNGC  170 (225)
T ss_pred             HHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCC-cEEEEEeeeecccCCCcccCcccccccCCCC
Confidence            899999999985               999999999999999999999 9999999999999999999999999999999


Q ss_pred             eeeEecCCCceeecCCCceEEEe-cCC
Q psy12544         67 VDLIITEKGKMVKGMGGAMDLVA-APS   92 (140)
Q Consensus        67 VNwIVTg~aVfVkG~GGaMdLve-apg   92 (140)
                      |++||||+|||++..++.|.|+| +|+
T Consensus       171 v~~iiTdl~V~~~~~~~~~~l~el~pg  197 (225)
T COG2057         171 VDRVITDLAVFEFDPGGELTLVELAPG  197 (225)
T ss_pred             ceEEEeccEEEEecCCCeEEEEEeCCC
Confidence            99999999999987554699999 887

>KOG3822|consensus

Probab=99.88  E-value=4.3e-24  Score=187.21  Aligned_cols=68  Identities=59%  Similarity=0.924  Sum_probs=65.2

Q ss_pred             ceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEe
Q psy12544         65 QCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFD  134 (140)
Q Consensus        65 ~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~  134 (140)
                      .-+||+|++  ++++||||+|||+++|+.||+|+|||++|||+|||+++|+|||||++||||||||+||+
T Consensus       405 DLANWMIPG--KlVKGMGGAMDLVss~~trVvvtMeH~ak~~~pKIme~C~lPLTGK~~v~rIItekAVF  472 (516)
T KOG3822|consen  405 DLANWMIPG--KLVKGMGGAMDLVSSPKTRVVVTMEHCAKDNTPKIMEKCTLPLTGKGCVDRIITEKAVF  472 (516)
T ss_pred             chhhhcccc--hhhccccccchhhhCCCceEEEEEeecccCCCchhhhhccccccCcchHhhhhhhheeE
Confidence            358999998  68999999999999999999999999999999999999999999999999999999987

>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]

Probab=99.84  E-value=1.7e-21  Score=160.31  Aligned_cols=68  Identities=51%  Similarity=0.827  Sum_probs=64.6

Q ss_pred             ceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEec
Q psy12544         65 QCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDR  135 (140)
Q Consensus        65 ~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~~  135 (140)
                      .-+||+|++  +.+||+||+|||+.+++ ||||+|+|++|+|.+|++++|+|||||.+||++|||||||+.
T Consensus       115 nlanw~Ipg--k~vpGmGGAmdl~~gak-kvii~m~H~~k~g~~ki~~~ctlplt~~~~v~~iiTdl~V~~  182 (225)
T COG2057         115 NLANWMIPG--KMVPGMGGAMDLVTGAK-KVIVVMEHTKKSGVGKILKECTLPLTGNGCVDRVITDLAVFE  182 (225)
T ss_pred             ceeeeeECC--ccccCCccchhhhcCCc-EEEEEeeeecccCCCcccCcccccccCCCCceEEEeccEEEE
Confidence            568999999  78999999999999886 999999999999999999999999999999999999999873

>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit

Probab=99.78  E-value=3e-19  Score=143.31  Aligned_cols=90  Identities=51%  Similarity=0.811  Sum_probs=82.7

Q ss_pred             CeeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccc
Q psy12544          1 MFNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQ   65 (140)
Q Consensus         1 ~f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~   65 (140)
                      +|.++++|++|..               |.+|++.+||.||++|++.+| +|+|++|.|++|+|++||+++|++|+|+++
T Consensus        86 ~f~~~~~G~~dv~~lga~qvD~~GnvN~~~~~~~~~~G~GG~~d~~~~a-~~~i~~~~~t~~~g~~~iv~~~~~~~t~~~  164 (207)
T TIGR02428        86 SFAMIRGGHVDVAVLGALQVSENGDLANWMIPGKLVPGMGGAMDLVAGA-KRVIVAMEHTTKDGESKILKECTLPLTGAG  164 (207)
T ss_pred             heeeEcCCceeEEEechHHhCCCCcccccccCCccccccCchhhhhcCC-CEEEEEEeeECCCCceEEcccCCCccCCCC
Confidence            4778888887764               899999999999999999999 999999999999999999999999999999


Q ss_pred             eeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544         66 CVDLIITEKGKMVKGMGGAMDLVA-APS   92 (140)
Q Consensus        66 ~VNwIVTg~aVfVkG~GGaMdLve-apg   92 (140)
                      +++++|||+|+|..... +|.|.| +|+
T Consensus       165 ~v~~vVTe~gV~~l~~~-~l~L~~~~pg  191 (207)
T TIGR02428       165 CVDRIVTELAVFEVTDG-GLILRELAPG  191 (207)
T ss_pred             cccEEECCCEEEEEeCC-cEEEEEECCC
Confidence            99999999999987544 799999 887

Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.

>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit

Probab=99.19  E-value=1.7e-11  Score=98.57  Aligned_cols=64  Identities=58%  Similarity=0.934  Sum_probs=58.2

Q ss_pred             eeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEe
Q psy12544         68 DLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFD  134 (140)
Q Consensus        68 NwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~  134 (140)
                      +|..+.  +..+|.||++|++.+++ ++|++|.|++|+|++||+++|++|+|+++++++||||+||+
T Consensus       113 ~~~~~~--~~~~G~GG~~d~~~~a~-~~i~~~~~t~~~g~~~iv~~~~~~~t~~~~v~~vVTe~gV~  176 (207)
T TIGR02428       113 NWMIPG--KLVPGMGGAMDLVAGAK-RVIVAMEHTTKDGESKILKECTLPLTGAGCVDRIVTELAVF  176 (207)
T ss_pred             ccccCC--ccccccCchhhhhcCCC-EEEEEEeeECCCCceEEcccCCCccCCCCcccEEECCCEEE
Confidence            465554  55789999999999886 99999999999999999999999999999999999999986

Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.

>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B

Probab=97.59  E-value=1.2e-05  Score=63.43  Aligned_cols=71  Identities=27%  Similarity=0.468  Sum_probs=52.5

Q ss_pred             CCcccccccCCCccccccccceeeecCC----CeEEEEeeecCCCCC-ccccccCC---CcccccceeeeEecCCCceee
Q psy12544          8 GNSADTTPDPGKMVKGMGGAMDLVAAPS----TKVVVTMEHNTRDGG-HKILPECS---LPLTGKQCVDLIITEKGKMVK   79 (140)
Q Consensus         8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~----~~viv~m~H~~k~G~-pKi~~~ct---lPlTg~~~VNwIVTg~aVfVk   79 (140)
                      |++.-. .+.++.+-|+||..|.+.||.    -|=|++|.-+.|+|+ ||||...+   -=-|.+..+++++||.|+.+.
T Consensus        48 Gqv~se-~ig~~~~sG~GGq~DF~~gA~~s~gG~sIial~St~~~G~~S~Iv~~l~~g~~vt~~r~dvd~VVTEyGvA~L  126 (154)
T PF13336_consen   48 GQVNSE-SIGGRQVSGIGGQLDFVRGAYLSKGGKSIIALPSTAKDGTISRIVPRLPPGAPVTTPRHDVDYVVTEYGVADL  126 (154)
T ss_dssp             S-EESS-EETTEESSGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSESB-TTT-SEEEETTEEEE-
T ss_pred             cceeec-ccCCceEecCccHHHHHHHHHhCCCCceEEEEecccCCCCccceeeeecCCCCcccCcccCCEEEcCCEEEEe
Confidence            344444 578899999999999999872    248999999999999 99999998   335677899999999887754

...

>TIGR03458 YgfH_subfam succinate CoA transferases

Probab=96.56  E-value=0.00078  Score=60.97  Aligned_cols=63  Identities=24%  Similarity=0.277  Sum_probs=53.7

Q ss_pred             cCCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCceee
Q psy12544         16 DPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMVK   79 (140)
Q Consensus        16 ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfVk   79 (140)
                      +.++.+-|+||..|.+.|| ..=|+++.=++|+|+ ||||..++-.-|-+.-|++||||.|+...
T Consensus       364 ~g~~~~sG~GGq~DF~rgA-~~Siial~st~~~g~~S~Ivp~l~~vt~~r~dv~~vVTE~G~A~L  427 (485)
T TIGR03458       364 MGTKMMNGIGGSGDFARNA-YLSIFMTPSIAKGGKISSIVPMVSHVDHTEHDVMVIVTEQGLADL  427 (485)
T ss_pred             cCceEEecCccHHHHHHHH-hhhhEEeeeecCCCceeeEeecCCCcCCchhhCCEEEecCEEEEe
Confidence            5778899999999999999 455677766888887 99999998667788999999999887754

A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.

>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B

Probab=95.92  E-value=0.0044  Score=49.02  Aligned_cols=74  Identities=28%  Similarity=0.545  Sum_probs=53.9

Q ss_pred             CCcccccceeeeEecCCCceeecCCCceEEEe----cCCCcEEEEEeecCCCCC-CccccCCC--CCcc-ccccccEEee
Q psy12544         58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLVA----APSTKVVVTMEHNTRDGG-HKILPECS--LPLT-GKQCVDLIIT  129 (140)
Q Consensus        58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLve----apg~~ViV~m~H~~k~G~-pKi~~~Ct--lPlT-g~~~V~~iiT  129 (140)
                      ..-|||.-+++-+ ..  .+.-|+||.+|.+.    +++-|=|++|.=+.++|+ ||||...+  =|.| .+.-||.|+|
T Consensus        43 evDL~Gqv~se~i-g~--~~~sG~GGq~DF~~gA~~s~gG~sIial~St~~~G~~S~Iv~~l~~g~~vt~~r~dvd~VVT  119 (154)
T PF13336_consen   43 EVDLTGQVNSESI-GG--RQVSGIGGQLDFVRGAYLSKGGKSIIALPSTAKDGTISRIVPRLPPGAPVTTPRHDVDYVVT  119 (154)
T ss_dssp             EEETTS-EESSEE-TT--EESSGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSESB-TTT-SEEEE
T ss_pred             EEecCcceeeccc-CC--ceEecCccHHHHHHHHHhCCCCceEEEEecccCCCCccceeeeecCCCCcccCcccCCEEEc
Confidence            4568998888888 33  56678899999887    333478889999999999 99999998  4554 5889999999


Q ss_pred             cceEe
Q psy12544        130 EKRFD  134 (140)
Q Consensus       130 dlav~  134 (140)
                      |.++-
T Consensus       120 EyGvA  124 (154)
T PF13336_consen  120 EYGVA  124 (154)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            99864

...

>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]

Probab=94.47  E-value=0.049  Score=50.32  Aligned_cols=96  Identities=24%  Similarity=0.325  Sum_probs=63.1

Q ss_pred             CCcccccccCCCccccccccceeeecCCCeEEEEeeecC-------CCCCccccccCC----------------Cccccc
Q psy12544          8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNT-------RDGGHKILPECS----------------LPLTGK   64 (140)
Q Consensus         8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~-------k~G~pKi~~~ct----------------lPlTg~   64 (140)
                      ||+... ..|+..+.|-||=.|..++| ++||..=+-|+       .||+-.|.++=+                +-+.-.
T Consensus       377 GNVNvS-~f~~~~~aG~GGFi~It~~a-~~ivF~GtftAG~~~~~i~dGrL~I~~EG~~kKfV~~V~~itFsg~~A~~~~  454 (527)
T COG4670         377 GNVNVS-KFGGSVIAGCGGFIDITQGA-KKIVFCGTFTAGGLKVEIADGRLNIEQEGRVKKFVRDVEHITFSGKYALEQG  454 (527)
T ss_pred             CcccHh-hcCCccccCCCCceehhcCc-ceEEEEeeeccCcceEEEecCeEEEEeccchhhhhhhhheeeechHHHHhcC
Confidence            444444 57888888999999999999 89998844444       355544444322                111112


Q ss_pred             ceeeeEecCCCceeecCCCceEEEe-cCCCcEEEEEeecCCCCCCccccCCCCCc
Q psy12544         65 QCVDLIITEKGKMVKGMGGAMDLVA-APSTKVVVTMEHNTRDGGHKILPECSLPL  118 (140)
Q Consensus        65 ~~VNwIVTg~aVfVkG~GGaMdLve-apg~~ViV~m~H~~k~G~pKi~~~CtlPl  118 (140)
                      .-|- -|||+|||.... ++|.|+| +||..+           +--||.++.||+
T Consensus       455 q~V~-YVTERaVF~Lt~-~GL~L~EIAPGvDl-----------ekDIL~qmef~p  496 (527)
T COG4670         455 QDVL-YVTERAVFKLTP-DGLTLIEIAPGVDL-----------EKDILDQMEFEP  496 (527)
T ss_pred             CcEE-EEEeeEEEEEcC-CCEEEEEecCCCCh-----------hhhHHhccCCCc
Confidence            2232 359999998764 4699999 888222           334888888876

>TIGR01110 mdcA malonate decarboxylase, alpha subunit

Probab=94.34  E-value=0.046  Score=50.78  Aligned_cols=60  Identities=27%  Similarity=0.354  Sum_probs=48.5

Q ss_pred             Cccccccccceee-----------------ecC-------CCeEEEEeeecCCCC-CccccccCCC------------c-
Q psy12544         19 KMVKGMGGAMDLV-----------------AAP-------STKVVVTMEHNTRDG-GHKILPECSL------------P-   60 (140)
Q Consensus        19 k~v~gmGGAMDLv-----------------~ga-------~~~viv~m~H~~k~G-~pKi~~~ctl------------P-   60 (140)
                      +.+.|.||+.|.+                 .||       +.|-||.|.-|.|+| .|||+++-.-            | 
T Consensus       362 ~~~SG~GGq~df~~~~~grrh~~~~w~~~~rgA~~~~~s~GgK~iI~l~st~~~g~~s~iV~~L~~~~~~~~~~~~g~pV  441 (543)
T TIGR01110       362 GRLAGFGGAPNMGHDPHGRRHATPAWLKMGAEFTDGDLPRGRKLVVQMVETYQEGMKPTFVETLDAWELAKKAGMPLAPV  441 (543)
T ss_pred             ceeccccCccccccCcccccccchhhhhhcccccccccCCCCeEEEEeecccCCCCCceeecccchhhhhhhccCCCCce
Confidence            5689999999999                 666       278888888899999 5999999852            2 


Q ss_pred             ccccceeeeEecCCCcee
Q psy12544         61 LTGKQCVDLIITEKGKMV   78 (140)
Q Consensus        61 lTg~~~VNwIVTg~aVfV   78 (140)
                      -|-+.-|++|+||.|+-.
T Consensus       442 t~~r~Dv~~VVTE~GiA~  459 (543)
T TIGR01110       442 MIYGDDVTHIVTEEGIAY  459 (543)
T ss_pred             EeccCCcCEEeccHhHhH
Confidence            346788999999977653

This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.

>TIGR03458 YgfH_subfam succinate CoA transferases

Probab=94.22  E-value=0.021  Score=51.82  Aligned_cols=74  Identities=20%  Similarity=0.300  Sum_probs=57.4

Q ss_pred             CCcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecceEe
Q psy12544         58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKRFD  134 (140)
Q Consensus        58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdlav~  134 (140)
                      ..-|||.-++.-++..  .+.-|.||..|.+.++... |+++.=++++|+ ||||..++-.-|-+.-||.|+||.++-
T Consensus       351 evDL~Gqv~se~~~g~--~~~sG~GGq~DF~rgA~~S-iial~st~~~g~~S~Ivp~l~~vt~~r~dv~~vVTE~G~A  425 (485)
T TIGR03458       351 EADIYGNVNSTHVMGT--KMMNGIGGSGDFARNAYLS-IFMTPSIAKGGKISSIVPMVSHVDHTEHDVMVIVTEQGLA  425 (485)
T ss_pred             EeccCceeeeecccCc--eEEecCccHHHHHHHHhhh-hEEeeeecCCCceeeEeecCCCcCCchhhCCEEEecCEEE
Confidence            4578888877765554  4677889999999966534 455555788886 999999985556699999999999864

A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.

>TIGR01584 citF citrate lyase, alpha subunit

Probab=93.89  E-value=0.031  Score=51.30  Aligned_cols=68  Identities=19%  Similarity=0.301  Sum_probs=53.1

Q ss_pred             cCCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCce-eecCCCceEEEe
Q psy12544         16 DPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKM-VKGMGGAMDLVA   89 (140)
Q Consensus        16 ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVf-VkG~GGaMdLve   89 (140)
                      .-|...-|.||..|.+.|| +.=|+++.-+  +|+ |+|+++.+-=-|-+..|++++||.|+- .+-   +.+|.|
T Consensus       367 s~G~~~sg~GGq~Dfa~GA-~~SII~~ps~--~Gris~IV~~v~~VtTpr~~Vd~VVTEyGIAvnlr---g~~l~e  436 (492)
T TIGR01584       367 SDGVIRGASGGHQDTAAGA-KLSIIVAPLV--RGRIPTVVEKVTTVITPGESIDVLVTEIGIAINPK---RKDLIE  436 (492)
T ss_pred             CCCeEEecCchHHHHHhhh-cceEEEEEcC--CCCcCeEeCCCCCEECChhhCCEEEccCEEecCCC---CCCHHH
Confidence            4577789999999999999 5666666654  465 999999976677889999999999877 332   346655

This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.

>KOG2828|consensus

Probab=92.07  E-value=0.085  Score=47.84  Aligned_cols=69  Identities=25%  Similarity=0.459  Sum_probs=53.7

Q ss_pred             CCcccccccCCCccccccccceeeecCC------CeEEEEeeecCCCCCccccc---cCCCcccccceeeeEecCCCce
Q psy12544          8 GNSADTTPDPGKMVKGMGGAMDLVAAPS------TKVVVTMEHNTRDGGHKILP---ECSLPLTGKQCVDLIITEKGKM   77 (140)
Q Consensus         8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~------~~viv~m~H~~k~G~pKi~~---~ctlPlTg~~~VNwIVTg~aVf   77 (140)
                      ||..+. .|-.++.-|.||..|...+|.      -+=|+.+.-.|++|++|||+   +=+==.|-+.=++++|||.|.-
T Consensus       336 ~~~~s~-~vg~r~lsG~GGqvDFlr~a~~g~dglgkpiialps~t~kGqskIVP~l~~gsgVvttrah~~y~VTEhGiA  413 (454)
T KOG2828|consen  336 GQANSD-SVGSRFLSGFGGQVDFLRNAKLGFDGLGKPIIALPSRTPKGQSKIVPTLKMGSGVVTTRAHLDYLVTEHGIA  413 (454)
T ss_pred             cccccc-chhhHHhhccCcchhhhhcCcccccccCCceeecCccCCCCceeecccccccCceeeeccceeEEEecccHH
Confidence            344444 675567899999999998873      24589999999999999998   5555677788889999987644

>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another

Probab=90.22  E-value=0.42  Score=37.61  Aligned_cols=66  Identities=21%  Similarity=0.084  Sum_probs=51.5

Q ss_pred             cccCC-CccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCccccccee--eeEecCCCceee
Q psy12544         14 TPDPG-KMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCV--DLIITEKGKMVK   79 (140)
Q Consensus        14 w~ipg-k~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~V--NwIVTg~aVfVk   79 (140)
                      |.-|. ...++.+|+.+|+..|.+-.+.+++|+.+|-..++.-+.+.+.+....+  ...+|.++++..
T Consensus       125 ~~~p~~~~~~~~~G~~~l~~~a~~~dva~i~~~~ad~~gnv~~~~~~~~~~~~~~a~a~~~tiv~ve~i  193 (217)
T PF01144_consen  125 YVDPRLVRLPGFGGAEYLAVPAIRPDVAIIHHQKADFVGNVDFEGSPGHFDDPAIAMAAKITIVTVEEI  193 (217)
T ss_dssp             HGGTT-SEEEEETTEEEEEEESTSEEEEEEECEEEETTSSEESSGSSHTTHSHHHHHCEEEEEEEEEEE
T ss_pred             cccccceeeeccCCcEEEEecCCccEEEEEEEcccCCcCeECEeCCCCccccccccccceEEEEEEEEE
Confidence            56687 6789999999999999434778888899999999999999998874444  366666556543

They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....

>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]

Probab=89.62  E-value=0.33  Score=44.89  Aligned_cols=69  Identities=25%  Similarity=0.359  Sum_probs=55.7

Q ss_pred             CCcccccccCCC-ccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCcee
Q psy12544          8 GNSADTTPDPGK-MVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMV   78 (140)
Q Consensus         8 g~~~~~w~ipgk-~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfV   78 (140)
                      ||+.-+ .+-|. +.-|+||.-|.+.+| .--|+++.-+.|.|. |.||..++===+-+.-++++|||.|.-+
T Consensus       366 G~~NSt-~v~g~r~~nGiGGs~DF~RnA-~~SI~~~pSta~~G~IS~IVP~~~hVd~~rhdvdvvVTE~GiAd  436 (501)
T COG0427         366 GAVNST-HVGGSRQMNGIGGSGDFVRNA-YLSIFATPSTAKGGTISRIVPMLSHVDHTRHDVDVVVTEYGIAD  436 (501)
T ss_pred             cccccc-cccCceeeecCCchHhhhhcc-eeeeEecccccCCCceeEEEecCCCccccccceeEEEEeechhh
Confidence            444445 56665 889999999999999 566777777889999 9999999886667889999999976554

>TIGR01110 mdcA malonate decarboxylase, alpha subunit

Probab=85.14  E-value=0.93  Score=42.36  Aligned_cols=72  Identities=22%  Similarity=0.278  Sum_probs=52.1

Q ss_pred             CCcccccceeeeEecCCCceeecCCCceEEE-----------------e-c------CCCcEEEEEeecCCCC-CCcccc
Q psy12544         58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLV-----------------A-A------PSTKVVVTMEHNTRDG-GHKILP  112 (140)
Q Consensus        58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLv-----------------e-a------pg~~ViV~m~H~~k~G-~pKi~~  112 (140)
                      ..-|||.-|..-+     ...-|.||++|..                 . +      .|.|-||.|.-|.|+| .|||++
T Consensus       349 qiDl~Gq~sset~-----~~~SG~GGq~df~~~~~grrh~~~~w~~~~rgA~~~~~s~GgK~iI~l~st~~~g~~s~iV~  423 (543)
T TIGR01110       349 QIDGYGNSSTATR-----GRLAGFGGAPNMGHDPHGRRHATPAWLKMGAEFTDGDLPRGRKLVVQMVETYQEGMKPTFVE  423 (543)
T ss_pred             EEecCCccchhhh-----ceeccccCccccccCcccccccchhhhhhcccccccccCCCCeEEEEeecccCCCCCceeec
Confidence            3456776665555     2455778888888                 3 2      3468888888899999 599999


Q ss_pred             CCCC------------Ccc-ccccccEEeecceEe
Q psy12544        113 ECSL------------PLT-GKQCVDLIITEKRFD  134 (140)
Q Consensus       113 ~Ctl------------PlT-g~~~V~~iiTdlav~  134 (140)
                      +-.-            |.| -+.-|+.|+||.++-
T Consensus       424 ~L~~~~~~~~~~~~g~pVt~~r~Dv~~VVTE~GiA  458 (543)
T TIGR01110       424 TLDAWELAKKAGMPLAPVMIYGDDVTHIVTEEGIA  458 (543)
T ss_pred             ccchhhhhhhccCCCCceEeccCCcCEEeccHhHh
Confidence            9852            333 478899999998754

This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.

>TIGR01584 citF citrate lyase, alpha subunit

Probab=80.62  E-value=1.4  Score=40.77  Aligned_cols=77  Identities=17%  Similarity=0.202  Sum_probs=53.3

Q ss_pred             ccccCCCcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecc
Q psy12544         53 ILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEK  131 (140)
Q Consensus        53 i~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdl  131 (140)
                      |+..-..-|||.=++.--..  +.+.-|.||..|.+.++...+| ++.-+  +|+ |||+.+.+-=-|-...||.|+||.
T Consensus       349 InsAlEVDl~gqVnv~t~s~--G~~~sg~GGq~Dfa~GA~~SII-~~ps~--~Gris~IV~~v~~VtTpr~~Vd~VVTEy  423 (492)
T TIGR01584       349 ILSALEIDTKFNVNVMTGSD--GVIRGASGGHQDTAAGAKLSII-VAPLV--RGRIPTVVEKVTTVITPGESIDVLVTEI  423 (492)
T ss_pred             EEeeEEEecCCeeeEeecCC--CeEEecCchHHHHHhhhcceEE-EEEcC--CCCcCeEeCCCCCEECChhhCCEEEccC
Confidence            34444556666655544222  3566688999999997764544 54543  464 999999975556689999999999


Q ss_pred             eEe
Q psy12544        132 RFD  134 (140)
Q Consensus       132 av~  134 (140)
                      ++-
T Consensus       424 GIA  426 (492)
T TIGR01584       424 GIA  426 (492)
T ss_pred             EEe
Confidence            865

This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
3dlx_A	489	Crystal Structure Of Human 3-Oxoacid Coa Transferas		1e-19
3dlx_A	489	Crystal Structure Of Human 3-Oxoacid Coa Transferas		2e-12
2nrc_A	481	C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transfer		3e-19
2nrc_A	481	C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transfer		1e-12
3oxo_A	488	Succinyl-Coa:3-Ketoacid Coa Transferase From Pig He		3e-19
3oxo_A	488	Succinyl-Coa:3-Ketoacid Coa Transferase From Pig He		1e-12
2nrb_A	481	C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transfer		3e-19
2nrb_A	481	C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transfer		1e-12
1ooz_A	475	Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Tran		3e-19
1ooz_A	475	Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Tran		2e-12
1o9l_A	481	Succinate:coenzyme-A Transferase (Pig Heart) Length		3e-19
1o9l_A	481	Succinate:coenzyme-A Transferase (Pig Heart) Length		2e-12
1m3e_A	481	Succinyl-Coa:3-Ketoacid Coa Transferase From Pig He		1e-16
1m3e_A	481	Succinyl-Coa:3-Ketoacid Coa Transferase From Pig He		2e-11
3cdk_B	219	Crystal Structure Of The Co-Expressed Succinyl-Coa		5e-11
3rrl_B	207	Complex Structure Of 3-Oxoadipate Coa-Transferase S		2e-08
3rrl_B	207	Complex Structure Of 3-Oxoadipate Coa-Transferase S		8e-04

>pdb|3DLX|A Chain A, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1 Length = 489

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGKMVKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 378 PGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 434

>pdb|3DLX|A Chain A, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1 Length = 489

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86  DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
           DLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 390 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 435

>pdb|2NRC|A Chain A, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Length = 481

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 433

>pdb|2NRC|A Chain A, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Length = 481

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86  DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
           DLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 434

>pdb|3OXO|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Covalently Bound To Coa Length = 488

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 433

>pdb|3OXO|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Covalently Bound To Coa Length = 488

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86  DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
           DLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 434

>pdb|2NRB|A Chain A, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Length = 481

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 433

>pdb|2NRB|A Chain A, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Length = 481

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86  DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
           DLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 434

>pdb|1OOZ|A Chain A, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase From Pig Heart Length = 475

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 371 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 427

>pdb|1OOZ|A Chain A, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase From Pig Heart Length = 475

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86  DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
           DLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 383 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 428

>pdb|1O9L|A Chain A, Succinate:coenzyme-A Transferase (Pig Heart) Length = 481

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 433

>pdb|1O9L|A Chain A, Succinate:coenzyme-A Transferase (Pig Heart) Length = 481

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 86  DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
           DLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 434

>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart (Selenomethionine) Length = 481

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 45/57 (78%)
Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGK+VKG GGA DLV++  TKVVVT EH+ +   HKI  +C+LPLTGKQCV+ IITE
Sbjct: 377 PGKLVKGXGGAXDLVSSAKTKVVVTXEHSAKGNAHKIXEKCTLPLTGKQCVNRIITE 433

>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart (Selenomethionine) Length = 481

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 36/46 (78%)
Query: 86  DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
           DLV++  TKVVVT EH+ +   HKI  +C+LPLTGKQCV+ IITEK
Sbjct: 389 DLVSSAKTKVVVTXEHSAKGNAHKIXEKCTLPLTGKQCVNRIITEK 434

>pdb|3CDK|B Chain B, Crystal Structure Of The Co-Expressed Succinyl-Coa Transferase A And B Complex From Bacillus Subtilis Length = 219

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           PGKMVKGMGGAMDLV   + ++VV MEH  + G  K+   CSLPLTG++ V  +IT+
Sbjct: 122 PGKMVKGMGGAMDLVNG-AKRIVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRLITD 177

>pdb|3RRL|B Chain B, Complex Structure Of 3-Oxoadipate Coa-Transferase Subunit A And B From Helicobacter Pylori 26695 Length = 207

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 73
           P K++KG GGA DLV   + KV+V  EH  + G  K+  ECSLPLTGK  V  +IT+
Sbjct: 115 PKKLIKGXGGAXDLVHG-AKKVIVIXEHCNKYGESKVKKECSLPLTGKGVVHQLITD 170

>pdb|3RRL|B Chain B, Complex Structure Of 3-Oxoadipate Coa-Transferase Subunit A And B From Helicobacter Pylori 26695 Length = 207

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 86  DLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
           DLV   + KV+V  EH  + G  K+  ECSLPLTGK  V  +IT+
Sbjct: 127 DLVHG-AKKVIVIXEHCNKYGESKVKKECSLPLTGKGVVHQLITD 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	5e-32
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	3e-30
3rrl_B	207	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	2e-25
3rrl_B	207	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	4e-24
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	7e-12
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	3e-11
1poi_B	260	Glutaconate coenzyme A-transferase; COA, glutamate	2e-11
1poi_B	260	Glutaconate coenzyme A-transferase; COA, glutamate	5e-09
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	2e-07
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	1e-05
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	6e-04

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Length = 481

 Score =  117 bits (294), Expect = 5e-32
 Identities = 42/72 (58%), Positives = 53/72 (73%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGK 76
           PGK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK  
Sbjct: 377 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAV 436

Query: 77  MVKGMGGAMDLV 88
                   + L+
Sbjct: 437 FDVDRKKGLTLI 448

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Length = 481

 Score =  112 bits (281), Expect = 3e-30
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
           GK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK
Sbjct: 378 GKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK 434

>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B Length = 207

 Score = 94.8 bits (236), Expect = 2e-25
 Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKG 75
           P K++KGMGGAMDLV     KV+V MEH  + G  K+  ECSLPLTGK  V  +IT+  
Sbjct: 115 PKKLIKGMGGAMDLVHGA-KKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDLA 172

>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B Length = 207

 Score = 91.3 bits (227), Expect = 4e-24
 Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEK 131
            K++KGMGGAMDLV     KV+V MEH  + G  K+  ECSLPLTGK  V  +IT+ 
Sbjct: 116 KKLIKGMGGAMDLVHGA-KKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDL 171

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Length = 531

 Score = 60.4 bits (147), Expect = 7e-12
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 22/79 (27%)

Query: 17  PGKMVKGMGGAMDLVAAPS------TKVVVTMEHNTRDGGHKILPECS----------LP 60
            GK++ G GG +D+ A         T    +++    DG   I+ E            + 
Sbjct: 393 NGKIM-GTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEIT 451

Query: 61  LTGKQCVD-----LIITEK 74
            +GK  ++       ITE+
Sbjct: 452 FSGKIALERGLDVRYITER 470

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Length = 531

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 21/78 (26%)

Query: 75  GKMVKGMGGAMDLVAAPS------TKVVVTMEHNTRDGGHKILPECS----------LPL 118
              + G GG +D+ A         T    +++    DG   I+ E            +  
Sbjct: 393 NGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITF 452

Query: 119 TGKQCVD-----LIITEK 131
           +GK  ++       ITE+
Sbjct: 453 SGKIALERGLDVRYITER 470

>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Length = 260

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 15/87 (17%)

Query: 15  PDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECS------------LPLT 62
             P     G GGA  +        ++ M+H  R   +KI    S            L L 
Sbjct: 124 HHPKTRFTGSGGANGIATYS--NTIIMMQHEKRRFMNKIDYVTSPGWIDGPGGRERLGLP 181

Query: 63  GKQCVDLIITEKGKM-VKGMGGAMDLV 88
           G     L++T+KG +        M L 
Sbjct: 182 GDVGPQLVVTDKGILKFDEKTKRMYLA 208

>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Length = 260

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 14/69 (20%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECS------------LPLTGKQ 122
                G GGA  +        ++ M+H  R   +KI    S            L L G  
Sbjct: 127 KTRFTGSGGANGIATYS--NTIIMMQHEKRRFMNKIDYVTSPGWIDGPGGRERLGLPGDV 184

Query: 123 CVDLIITEK 131
              L++T+K
Sbjct: 185 GPQLVVTDK 193

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Length = 519

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 8   GNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCV 67
            N    T   G +    GG  D   A    +V++     R      + + +  +T    V
Sbjct: 381 FNVNVMTGSDGVIRGASGGHCDTAFAAKMSLVIS--PLVRGRIPTFVDKVNTVITPGTSV 438

Query: 68  DLIITEKG 75
           D+++TE G
Sbjct: 439 DVVVTEVG 446

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Length = 519

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
           G +    GG  D   A    +V++     R      + + +  +T    VD+++TE
Sbjct: 391 GVIRGASGGHCDTAFAAKMSLVIS--PLVRGRIPTFVDKVNTVITPGTSVDVVVTE 444

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Length = 497

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 20/79 (25%)

Query: 61  LTGKQCVDLIITEKGKMVKGMGGAMD--------LVAAPSTKVVVTMEHNTRDGGH-KIL 111
           + G      +     KM+ G+GG+ D        +    S           + G    ++
Sbjct: 362 IYGNVNSTHV--GGTKMMNGIGGSGDFARNAHLAIFVTKSI---------AKGGNISSVV 410

Query: 112 PECSLPLTGKQCVDLIITE 130
           P  S     +  VD+++TE
Sbjct: 411 PMVSHVDHTEHDVDILVTE 429

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
3rrl_B	207	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	99.92
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	99.86
1poi_B	260	Glutaconate coenzyme A-transferase; COA, glutamate	99.7
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	99.68
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	99.61
1xr4_A	509	Putative citrate lyase alpha chain/citrate-ACP TR;	99.61
3rrl_B	207	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	99.6
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	99.59
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	99.58
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	99.55
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	99.53
2nvv_A	506	Acetyl-COA hydrolase/transferase family protein; a	99.5
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	99.42
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	99.38
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	99.37
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	99.11
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	99.1
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	99.02
1xr4_A	509	Putative citrate lyase alpha chain/citrate-ACP TR;	99.02
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	98.94
2nvv_A	506	Acetyl-COA hydrolase/transferase family protein; a	98.94
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	98.93
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	98.92
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	98.89
4eu9_A	514	Succinyl-COA:acetate coenzyme A transferase; HET:	98.87
1poi_B	260	Glutaconate coenzyme A-transferase; COA, glutamate	98.73
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	98.65
4eu9_A	514	Succinyl-COA:acetate coenzyme A transferase; HET:	98.12

>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B

Probab=99.92  E-value=1.3e-26  Score=185.18  Aligned_cols=90  Identities=44%  Similarity=0.648  Sum_probs=84.7

Q ss_pred             CeeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccc
Q psy12544          1 MFNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQ   65 (140)
Q Consensus         1 ~f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~   65 (140)
                      +|+||||||+|..               |++|+++++|+|||||++++| +|+|++|+|++|+|+|||+++|++|+|+++
T Consensus        84 ~F~~~~gG~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~d~~~~A-~~vi~~~~~t~k~G~~kiv~~~~~~~t~~~  162 (207)
T 3rrl_B           84 SFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMDLVHGA-KKVIVIMEHCNKYGESKVKKECSLPLTGKG  162 (207)
T ss_dssp             HHHHHHTTCCSEEEECCSEEETTSCEECSEETTTEECCCTTHHHHHHHS-SEEEEECCSBCTTSCBSEESSCSSCCSBSS
T ss_pred             HHHHHhCCCeeEEEECHHHHCcCCCccccccCCeeecCcccHHHHHhCC-CEEEEEEeeecCCCcceECccccccCCCCC
Confidence            3889999999875               999999999999999999999 999999999999999999999999999999


Q ss_pred             eeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544         66 CVDLIITEKGKMVKGMGGAMDLVA-APS   92 (140)
Q Consensus        66 ~VNwIVTg~aVfVkG~GGaMdLve-apg   92 (140)
                      +|+++|||+|+|.... ++|.|.| +|+
T Consensus       163 ~v~~vVTe~gV~~l~~-~~l~L~eiapG  189 (207)
T 3rrl_B          163 VVHQLITDLAVFEFSN-NAMKLVELQEG  189 (207)
T ss_dssp             CCSEEECSSEEEEEET-TEEEEEEECTT
T ss_pred             ceEEEECCceEEEEcC-CeEEEEEeCCC
Confidence            9999999999998863 4899999 887

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A

Probab=99.86  E-value=3.8e-23  Score=182.11  Aligned_cols=92  Identities=51%  Similarity=0.790  Sum_probs=84.9

Q ss_pred             CeeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccc
Q psy12544          1 MFNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQ   65 (140)
Q Consensus         1 ~f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~   65 (140)
                      +|.+|||||+|..               |++||++++|+||+||++++|.+|+|++|+|++|+|+|||+++|++|+|+++
T Consensus       346 ~F~~~~gG~~Dv~ilga~qVD~~Gnvn~~~~pg~~~~G~GG~~D~~~ga~~k~ii~~~~t~k~g~~~Iv~~~~~~~t~~~  425 (481)
T 3k6m_A          346 SFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQ  425 (481)
T ss_dssp             HHHHHHTTCCSEEEECCSEEETTCCEECSCBTTTBCSCCTTHHHHTCCTTSEEEEECCSBCGGGCBSEESSCSSCCSBSS
T ss_pred             HeeeecCCCeEEEEechHhccCCCCccccccCCceeecCCcchhhhccCCceEEEEEeeEcCCCceEEecccccCCCCCC
Confidence            3889999998854               9999999999999999999993499999999999999999999999999999


Q ss_pred             eeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544         66 CVDLIITEKGKMVKGMGGAMDLVA-APS   92 (140)
Q Consensus        66 ~VNwIVTg~aVfVkG~GGaMdLve-apg   92 (140)
                      +++++|||+|+|.....++|.|.| +|+
T Consensus       426 ~v~~vVTE~gV~~l~~~~gl~L~eiapG  453 (481)
T 3k6m_A          426 CVNRIITEKAVFDVDRKKGLTLIELWEG  453 (481)
T ss_dssp             CCCEEECSSEEEEEETTTEEEEEEECTT
T ss_pred             cceEEEcCcEEEEecCCCcEEEEEeCCC
Confidence            999999999999985456899999 888

>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3

Probab=99.70  E-value=1.8e-18  Score=141.67  Aligned_cols=100  Identities=22%  Similarity=0.353  Sum_probs=82.4

Q ss_pred             eee-----eecCCcccc--------------------cccCCCccccccccceeeecCCCeEEEEeeecCCCCCcccccc
Q psy12544          2 FNI-----LRGGNSADT--------------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPE   56 (140)
Q Consensus         2 f~~-----ir~g~~~~~--------------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~   56 (140)
                      |.+     ||+|++|..                    |++|++.++|+|||||++++| +++|++ +|+.|    ||+++
T Consensus        86 fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~D~~~~A-~~~iv~-~h~~r----k~V~~  159 (260)
T 1poi_B           86 VGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANGIATYS-NTIIMM-QHEKR----RFMNK  159 (260)
T ss_dssp             HHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHHHHHHS-CEEEEC-CCCTT----TBCSS
T ss_pred             hcccchhhhhcCCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchHHHHhCC-CEEEEE-ECCCC----eeccc
Confidence            677     888888753                    899999999999999999999 899999 99865    99999


Q ss_pred             CC----------------Cccccc-ceeeeEecCCCceeecC-CCceEEEe-cCCCcEEEEEeecCCCCCCccccCCCCC
Q psy12544         57 CS----------------LPLTGK-QCVDLIITEKGKMVKGM-GGAMDLVA-APSTKVVVTMEHNTRDGGHKILPECSLP  117 (140)
Q Consensus        57 ct----------------lPlTg~-~~VNwIVTg~aVfVkG~-GGaMdLve-apg~~ViV~m~H~~k~G~pKi~~~CtlP  117 (140)
                      |+                +|+|+. ++ +++|||+|||.... .++|+|.| +|+..+           + -|+++..++
T Consensus       160 v~~vt~~G~~~~~~~r~~~~~t~~r~~-~~vVTe~gV~~~~~~~~~l~L~e~~Pgvt~-----------e-dv~~~t~f~  226 (260)
T 1poi_B          160 IDYVTSPGWIDGPGGRERLGLPGDVGP-QLVVTDKGILKFDEKTKRMYLAAYYPTSSP-----------E-DVLENTGFD  226 (260)
T ss_dssp             CSCCSBCCSTTSTTHHHHTTCCTTCCE-EEEEETTEEEEECTTTCCEEEEEECTTCCH-----------H-HHHHTCSSC
T ss_pred             CceeeccCcccccccccccccccCCCC-CEEEeCceEEEecCCCCcEEEEEeCCCCCH-----------H-HHHHhcCCC
Confidence            99                999998 66 99999999997643 35899999 887222           1 366666666


Q ss_pred             ccc
Q psy12544        118 LTG  120 (140)
Q Consensus       118 lTg  120 (140)
                      |.-
T Consensus       227 ~~v  229 (260)
T 1poi_B          227 LDV  229 (260)
T ss_dssp             CCC
T ss_pred             eec
Confidence            653

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*

Probab=99.68  E-value=4.1e-18  Score=150.80  Aligned_cols=103  Identities=23%  Similarity=0.363  Sum_probs=86.4

Q ss_pred             eeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeecCC-------CC---------C
Q psy12544          2 FNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTR-------DG---------G   50 (140)
Q Consensus         2 f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k-------~G---------~   50 (140)
                      |+++|+|++|..               |++ |++++|+||+||++.|| +|+|++|+|++|       ||         .
T Consensus       363 f~~~~~g~vdvailga~eVD~~Gnvn~~~~-G~~~~G~GG~~D~~~gA-~~~i~~~~~t~~g~~~~~~~g~l~i~~eg~~  440 (531)
T 2ahu_A          363 FDFYHGGGLDVCYLSFAEVDQHGNVGVHKF-NGKIMGTGGFIDISATS-KKIIFCGTLTAGSLKTEIADGKLNIVQEGRV  440 (531)
T ss_dssp             HHHHHTTCCSEEEEECSEEETTSCEECSEE-TTEECBCTTHHHHHTTC-SEEEEECCSEESSCEEEECSSCEEEEECCSE
T ss_pred             hheecCCCeEEEEeChHHhCCCCcchhhcc-CCceecCCcchhhhcCC-CeEEEEeccccCCceeeecCCeEEEeccCCC
Confidence            778888888742               555 77899999999999999 999999999999       66         6


Q ss_pred             ccccccCC-Cccccc-----ceeeeEecCCCceeecCCCceEEEe-cCCCcEEEEEeecCCCCCCc-cccCCCCCcc
Q psy12544         51 HKILPECS-LPLTGK-----QCVDLIITEKGKMVKGMGGAMDLVA-APSTKVVVTMEHNTRDGGHK-ILPECSLPLT  119 (140)
Q Consensus        51 pKi~~~ct-lPlTg~-----~~VNwIVTg~aVfVkG~GGaMdLve-apg~~ViV~m~H~~k~G~pK-i~~~CtlPlT  119 (140)
                      ||||++|+ +|+||.     ++++++|||+|+|.... ++|+|.| +|+..+            -+ |+++..+++.
T Consensus       441 ~kiV~~v~~v~~~G~~~~~~~~v~~vVTE~gV~~l~~-~gl~l~e~apgv~~------------e~dv~~~t~~~~~  504 (531)
T 2ahu_A          441 KKFIRELPEITFSGKIALERGLDVRYITERAVFTLKE-DGLHLIEIAPGVDL------------QKDILDKMDFTPV  504 (531)
T ss_dssp             ESEESCCSSCSBCHHHHHHTTCEEEEECSSEEEEEET-TEEEEEEECTTCCH------------HHHTGGGSSSCCE
T ss_pred             ceECCCCccCCCCCcccccCCCcEEEECCCEEEEecC-CCceeeeeCCCCCH------------HHHHHHhcCCCee
Confidence            99999999 999998     89999999999998753 4799999 887222            25 7777777765

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A

Probab=99.61  E-value=6.1e-17  Score=142.28  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=66.7

Q ss_pred             CCcccccccCCCccccccccceeeecCCCe-----EEEEeeecCCCCC-ccccccCCCcc-cccceeeeEecCCCceeec
Q psy12544          8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTK-----VVVTMEHNTRDGG-HKILPECSLPL-TGKQCVDLIITEKGKMVKG   80 (140)
Q Consensus         8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~~~-----viv~m~H~~k~G~-pKi~~~ctlPl-Tg~~~VNwIVTg~aVfVkG   80 (140)
                      |++++ |++||++++||||+||++.|| ++     +||+|+|++|+|+ ||||++|++|+ |++++|++||||+|+++..
T Consensus       345 G~v~~-~~~~~~~~~G~GG~~Df~~gA-~~s~ggk~ii~~~s~~k~G~is~Iv~~~~~~vtt~~~~v~~vvTE~Gva~l~  422 (455)
T 3qli_A          345 GACNS-EHMLGHQYSASGGQLDFVRGA-YASKGGRSIIATPSTAAKGTVSRIIPRIDGPVTTPRIDTHYIVTEFGAVNLK  422 (455)
T ss_dssp             SCEEC-CCSTTCCCGGGSSHHHHHHHH-HHSTTCEEEEECCSEETTTTEESEESCCSSSCSBCTTTCCEEEETTEEEECT
T ss_pred             CCeee-eccCCeeecCcChhHHHHHHH-hhcCCCcEEEEEeCccCCCCCCeEeccCCCCcccCcccccEEEeccEEEECC
Confidence            44455 699999999999999999998 55     9999999999998 99999999885 6999999999999999863


Q ss_pred             CCCceEEEe
Q psy12544         81 MGGAMDLVA   89 (140)
Q Consensus        81 ~GGaMdLve   89 (140)
                         |+.+.|
T Consensus       423 ---G~s~~e  428 (455)
T 3qli_A          423 ---GLSSTE  428 (455)
T ss_dssp             ---TCCHHH
T ss_pred             ---CCCHHH
Confidence               345544

>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2

Probab=99.61  E-value=1e-16  Score=141.61  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             cc-cCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccceeeeEecCCCceeecCCCceEEEe-cC
Q psy12544         14 TP-DPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVA-AP   91 (140)
Q Consensus        14 w~-ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLve-ap   91 (140)
                      |+ +||++++||||+||++.|| +++|++|+|+++ +.||||++|++|+|++++|++||||+|+++. . .+++|.| ++
T Consensus       382 ~~~~~g~~~~G~GG~~D~~~gA-~~sii~~~~t~~-~~skIV~~~~~v~t~~~~V~~iVTE~Gva~~-l-~g~~l~Era~  457 (509)
T 1xr4_A          382 MTGSNGVLRGASGGHSDTAAGA-DLTIITAPLVRG-RIPCVVEKVLTTVTPGASVDVLVTDHGIAVN-P-ARQDLLDNLR  457 (509)
T ss_dssp             SBCTTSCBCSBCTTHHHHHHHS-SEEEEECCSEET-TEESBCSSCSSCSBCGGGCCEEEETTEEEEC-T-TCHHHHHHHH
T ss_pred             eeccCCeEecccccHHHHhhcc-CeEEEEEcccCC-CCCeEeeCCCCcccCcCeeCEEECCcEEEEc-C-CCCCHHHHhh
Confidence            89 7999999999999999999 999999999986 7899999999999999999999999999983 1 2589998 54

>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B

Probab=99.60  E-value=2e-16  Score=126.14  Aligned_cols=66  Identities=48%  Similarity=0.751  Sum_probs=61.5

Q ss_pred             eeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEe
Q psy12544         66 CVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFD  134 (140)
Q Consensus        66 ~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~  134 (140)
                      ..||.+++  +..+|+||++|++.+++ |+|++|+|++|+|+|||+++|++|+|++++|++||||+||+
T Consensus       109 vn~~~~~~--~~~~G~GGa~d~~~~A~-~vi~~~~~t~k~G~~kiv~~~~~~~t~~~~v~~vVTe~gV~  174 (207)
T 3rrl_B          109 LANWMIPK--KLIKGMGGAMDLVHGAK-KVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDLAVF  174 (207)
T ss_dssp             EECSEETT--TEECCCTTHHHHHHHSS-EEEEECCSBCTTSCBSEESSCSSCCSBSSCCSEEECSSEEE
T ss_pred             ccccccCC--eeecCcccHHHHHhCCC-EEEEEEeeecCCCcceECccccccCCCCCceEEEECCceEE
Confidence            35788887  67899999999999875 99999999999999999999999999999999999999987

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}

Probab=99.59  E-value=5.7e-17  Score=140.24  Aligned_cols=72  Identities=22%  Similarity=0.294  Sum_probs=66.9

Q ss_pred             cccCCCccccccccceeeecCCCeE-----EEEeeecCCCCC-ccccccC---CCcccccceeeeEecCCCceeecCCCc
Q psy12544         14 TPDPGKMVKGMGGAMDLVAAPSTKV-----VVTMEHNTRDGG-HKILPEC---SLPLTGKQCVDLIITEKGKMVKGMGGA   84 (140)
Q Consensus        14 w~ipgk~v~gmGGAMDLv~ga~~~v-----iv~m~H~~k~G~-pKi~~~c---tlPlTg~~~VNwIVTg~aVfVkG~GGa   84 (140)
                      |++||++++|+||+||++.|| +++     |++|+|++|+|+ ||||++|   +.|+|++++|++||||+|++.+.   +
T Consensus       319 ~~~g~~~~~G~GG~~D~~~gA-~~~~ggk~ii~~~~t~k~G~iskiv~~~~~g~~v~t~~~~v~~vvTE~Gva~l~---g  394 (436)
T 2oas_A          319 DSIGTKIYSGVGGQMDFIRGA-GLSEGGRSVIALPSTAAGGRISRIASVLSPGAGVVTTRAHVHYIVTEYGAANLK---G  394 (436)
T ss_dssp             SEETTEECSCCTTHHHHHHHH-HHSTTCEEEEECCSEETTTTEESEESSCCTTCCEEECTTTCCEEEETTEEEECT---T
T ss_pred             eecCCeeecccccHHHHhhhh-hhcCCCcEEEEEeeecCCCCCCEEeeccCCCCCcccCcccCCEEECCCEEEECC---C
Confidence            799999999999999999999 777     999999999998 9999999   99999999999999999999873   4


Q ss_pred             eEEEe
Q psy12544         85 MDLVA   89 (140)
Q Consensus        85 MdLve   89 (140)
                      ++|.|
T Consensus       395 ~~~~e  399 (436)
T 2oas_A          395 RSLRE  399 (436)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            67766

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}

Probab=99.58  E-value=1.1e-16  Score=137.91  Aligned_cols=72  Identities=21%  Similarity=0.323  Sum_probs=52.8

Q ss_pred             cccCCCccccccccceeeecCCC-----eEEEEeeecCCCCC-ccccccC---CCcccccceeeeEecCCCceeecCCCc
Q psy12544         14 TPDPGKMVKGMGGAMDLVAAPST-----KVVVTMEHNTRDGG-HKILPEC---SLPLTGKQCVDLIITEKGKMVKGMGGA   84 (140)
Q Consensus        14 w~ipgk~v~gmGGAMDLv~ga~~-----~viv~m~H~~k~G~-pKi~~~c---tlPlTg~~~VNwIVTg~aVfVkG~GGa   84 (140)
                      |++++++++|+||+||++.|| +     |+|++|+|++|+|+ ||||++|   ++|+|..++|+++|||+|++...   +
T Consensus       325 ~~~g~~~~~G~GG~~D~~~~A-~~s~~gk~ii~~~~t~k~G~~s~iv~~~~~g~~v~~~~~~v~~vVTE~gva~l~---g  400 (439)
T 3d3u_A          325 ESIGYEQFSGSGGQVDFLRGA-KRSKGGISIMAFPSTAKKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVARLR---G  400 (439)
T ss_dssp             ------------CHHHHHHHH-TTSTTCEEEEECCSEETTTTEESEESSCC------CCSTTCSEEEETTEEEECT---T
T ss_pred             eccCCeeecccccHHHHhhcc-cccCCCeEEEEEeeecCCCCCCeEeECccCCCCceeCCCcceEEECCCEEEEeC---C
Confidence            799999999999999999999 6     99999999999999 9999999   69999999999999999999864   5


Q ss_pred             eEEEe
Q psy12544         85 MDLVA   89 (140)
Q Consensus        85 MdLve   89 (140)
                      ++|.|
T Consensus       401 ~~l~e  405 (439)
T 3d3u_A          401 ATLRQ  405 (439)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            88888

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2

Probab=99.55  E-value=5.6e-16  Score=136.53  Aligned_cols=79  Identities=23%  Similarity=0.320  Sum_probs=70.9

Q ss_pred             CCccccccc-CCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCceeecCCCce
Q psy12544          8 GNSADTTPD-PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAM   85 (140)
Q Consensus         8 g~~~~~w~i-pgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaM   85 (140)
                      ||+++ |++ +|++++|+||+||++.|| +++|++|+|++|+|+ ||||++|+.|+|.+++|+++|||+|+++..   |+
T Consensus       364 G~vn~-~~~~g~~~~~G~GG~~Df~~gA-~~sii~~~st~k~G~iskIv~~~~~v~t~~~~v~~vVTE~gva~l~---G~  438 (497)
T 2g39_A          364 GNVNS-THVGGTKMMNGIGGSGDFARNA-HLAIFVTKSIAKGGNISSVVPMVSHVDHTEHDVDILVTEQGLADLR---GL  438 (497)
T ss_dssp             SCEES-SEETTTEECSCCTTHHHHHHHC-SEEEEECCSEEGGGTEESEESSCSSCSBCGGGCCEEEETTEEEECT---TC
T ss_pred             Cceee-eeccCCcEEeccCcchhhhccC-CEEEEEEccccCCCCcCeEeeCCCCeecCCCceeEEECCCEEEEcc---CC
Confidence            34444 575 999999999999999999 999999999999999 999999999999999999999999999874   57


Q ss_pred             EEEe-cC
Q psy12544         86 DLVA-AP   91 (140)
Q Consensus        86 dLve-ap   91 (140)
                      .|.| ++
T Consensus       439 ~~~era~  445 (497)
T 2g39_A          439 APRERAR  445 (497)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            8888 43

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}

Probab=99.53  E-value=1.7e-15  Score=134.21  Aligned_cols=80  Identities=20%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             cCCcccccc-cCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccceeeeEecCCCceeecCCCce
Q psy12544          7 GGNSADTTP-DPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAM   85 (140)
Q Consensus         7 ~g~~~~~w~-ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaM   85 (140)
                      -||+++ |+ +||++++|+||+||+++|| +++|++|+|+ +.+.||||++|++|+|..++|++||||+|+++. . .++
T Consensus       380 ~Gnvn~-~~~~gg~~~~G~GG~~D~~~gA-~~~ii~~~~t-~g~~skiV~~~~~vtt~~~~V~~VVTE~Gva~~-l-~g~  454 (519)
T 2hj0_A          380 NFNVNV-MTGSDGVIRGASGGHCDTAFAA-KMSLVISPLV-RGRIPTFVDKVNTVITPGTSVDVVVTEVGIAIN-P-NRP  454 (519)
T ss_dssp             TCCEEC-SBCTTCCBCCBCTTHHHHHHHS-SEEEEECCSE-ETTEESBCSSCSSCSBCGGGCCEEECSSCEEEC-T-TCH
T ss_pred             CCceee-eeccCCeEecccccHHHHhhcc-CeEEEEEccc-CCCCCeeccCCCCcccCCCCCCEEECCCEEEEC-C-CCC
Confidence            366666 58 9999999999999999999 9999999999 567799999999999999999999999999982 1 258


Q ss_pred             EEEecC
Q psy12544         86 DLVAAP   91 (140)
Q Consensus        86 dLveap   91 (140)
                      +|.|-+
T Consensus       455 ~l~Era  460 (519)
T 2hj0_A          455 DLIEYF  460 (519)
T ss_dssp             HHHHHT
T ss_pred             CHHHHH
Confidence            999943

>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}

Probab=99.50  E-value=2.3e-15  Score=132.89  Aligned_cols=77  Identities=22%  Similarity=0.285  Sum_probs=69.9

Q ss_pred             CCccccccc-CCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCceeecCCCce
Q psy12544          8 GNSADTTPD-PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAM   85 (140)
Q Consensus         8 g~~~~~w~i-pgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaM   85 (140)
                      ||+++ |++ ||+++.|+||+||++.|| +++|++|+|++|+|+ ||||++|+.|.|.+++|+++|||+|+++..   |+
T Consensus       360 G~vn~-~~~~g~~~~~G~GG~~Df~~gA-~~si~~~~st~k~G~is~iV~~~~~v~~~~~~v~~vVTE~Gva~L~---G~  434 (506)
T 2nvv_A          360 GNINS-THVSGTRMMNGIGGSGDFTRNS-YVSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLR---GK  434 (506)
T ss_dssp             SCEEC-SEETTTEECSCCTTHHHHHHHS-SSEEEECCSEEGGGTEESEESSCSSCSBCTTTCCEEEETTEEEECT---TC
T ss_pred             Cceee-eeccCCceEcccCcHHHHhhcc-CeEEEEeccccCCCCCCeEEeCCCCcccCCCceeEEECCCEEEEcc---CC
Confidence            34444 575 999999999999999999 899999999999998 999999999999999999999999999874   57


Q ss_pred             EEEe
Q psy12544         86 DLVA   89 (140)
Q Consensus        86 dLve   89 (140)
                      .|.|
T Consensus       435 ~~~e  438 (506)
T 2nvv_A          435 NPRE  438 (506)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            8888

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*

Probab=99.42  E-value=1.5e-14  Score=126.62  Aligned_cols=67  Identities=24%  Similarity=0.319  Sum_probs=62.9

Q ss_pred             cccCCCccccccccceeeecC----C--CeEEEEeeecCCCC---C-ccccccCCC---cccccceeeeEecCCCceeec
Q psy12544         14 TPDPGKMVKGMGGAMDLVAAP----S--TKVVVTMEHNTRDG---G-HKILPECSL---PLTGKQCVDLIITEKGKMVKG   80 (140)
Q Consensus        14 w~ipgk~v~gmGGAMDLv~ga----~--~~viv~m~H~~k~G---~-pKi~~~ctl---PlTg~~~VNwIVTg~aVfVkG   80 (140)
                      |+++|+++.|+||+||++.||    +  +|+|++|+|++|+|   + ||||++|+.   |+|.+++|++||||+|++...
T Consensus       324 ~~~g~~~~~G~GG~~Df~~gA~~s~g~~~k~Ii~~~st~k~G~g~~is~IV~~~~~g~~v~t~~~~v~~iVTE~Gva~L~  403 (448)
T 3gk7_A          324 DSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMK  403 (448)
T ss_dssp             SEETTEECSCCTTHHHHHHHHHTCTTSCCEEEEECCSEEECTTSCEEESEESSCCTTCCCSBCTTTCCEEEETTEEEECT
T ss_pred             eccCCceecccCchHHHhcchhhccCCCCcEEEEEeeeecCCCCCCCCeEeecCCCCCCceeCcCceEEEEeceEEEEcc
Confidence            699999999999999999998    1  69999999999999   5 999999999   999999999999999999864

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}

Probab=99.38  E-value=3.1e-14  Score=123.62  Aligned_cols=77  Identities=22%  Similarity=0.302  Sum_probs=68.8

Q ss_pred             CCcccccccCCCccccccccceeeecCCCeE-----EEEeeecCCCCC-ccccccCCC---cccccceeeeEecCCCcee
Q psy12544          8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTKV-----VVTMEHNTRDGG-HKILPECSL---PLTGKQCVDLIITEKGKMV   78 (140)
Q Consensus         8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~~~v-----iv~m~H~~k~G~-pKi~~~ctl---PlTg~~~VNwIVTg~aVfV   78 (140)
                      |++++ |+++|+++.|+||+||++.|| ++.     |++|+|++|+|+ ||||++|+.   +.|.+++|+++|||+|++.
T Consensus       323 G~vn~-~~~g~~~~~G~GG~~Df~~ga-~~s~ggk~ii~~~st~~~G~is~iv~~~~~g~~v~~~~~~v~~vVTE~Gva~  400 (434)
T 3eh7_A          323 GQVVS-ECIGSKQFSGTGGQVDYVRGA-AWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQ  400 (434)
T ss_dssp             CCEEC-CSTTSCCSBCCCTHHHHHHHH-HHSTTCEEEEECCSEETTTTEESEESSCCTTCCEEECTTTCCEEEETTEEEE
T ss_pred             CCeee-eccCCeeecccCchHHHhccc-cccCCCceEEEEeeecCCCCCCeEeeCCCCCCCceeCccceeEEEcccEEEE
Confidence            44444 699999999999999999998 666     999999999999 999999999   9999999999999999998


Q ss_pred             ecCCCceEEEe
Q psy12544         79 KGMGGAMDLVA   89 (140)
Q Consensus        79 kG~GGaMdLve   89 (140)
                      ..   |+.|.|
T Consensus       401 L~---G~~~~E  408 (434)
T 3eh7_A          401 LK---GKSLRQ  408 (434)
T ss_dssp             CT---TCCHHH
T ss_pred             CC---CCCHHH
Confidence            63   477777

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A

Probab=99.37  E-value=1.1e-13  Score=122.10  Aligned_cols=66  Identities=59%  Similarity=0.954  Sum_probs=61.0

Q ss_pred             eeeEecCCCceeecCCCceEEEecC-CCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEec
Q psy12544         67 VDLIITEKGKMVKGMGGAMDLVAAP-STKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDR  135 (140)
Q Consensus        67 VNwIVTg~aVfVkG~GGaMdLveap-g~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~~  135 (140)
                      .||.+++  +..+|+||+||++.++ + |+|++|+|++|+|.|||+++|++|+|++++|++||||+||+.
T Consensus       372 n~~~~pg--~~~~G~GG~~D~~~ga~~-k~ii~~~~t~k~g~~~Iv~~~~~~~t~~~~v~~vVTE~gV~~  438 (481)
T 3k6m_A          372 ANWMIPG--KLVKGMGGAMDLVSSAKT-KVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFD  438 (481)
T ss_dssp             ECSCBTT--TBCSCCTTHHHHTCCTTS-EEEEECCSBCGGGCBSEESSCSSCCSBSSCCCEEECSSEEEE
T ss_pred             cccccCC--ceeecCCcchhhhccCCc-eEEEEEeeEcCCCceEEecccccCCCCCCcceEEEcCcEEEE
Confidence            5888876  6789999999999977 5 999999999999999999999999999999999999999873

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A

Probab=99.11  E-value=6.2e-12  Score=110.55  Aligned_cols=73  Identities=22%  Similarity=0.372  Sum_probs=61.6

Q ss_pred             CcccccceeeeEecCCCceeecCCCceEEEecC----CCcEEEEEeecCCCCC-CccccCCCCCc-cccccccEEeecce
Q psy12544         59 LPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAP----STKVVVTMEHNTRDGG-HKILPECSLPL-TGKQCVDLIITEKR  132 (140)
Q Consensus        59 lPlTg~~~VNwIVTg~aVfVkG~GGaMdLveap----g~~ViV~m~H~~k~G~-pKi~~~CtlPl-Tg~~~V~~iiTdla  132 (140)
                      .-|+| .+.||.+.+  .+..|+||.||++.++    +-|+||+|+|++|+|+ ||||++|++|+ |++++||+||||++
T Consensus       341 vd~~G-~v~~~~~~~--~~~~G~GG~~Df~~gA~~s~ggk~ii~~~s~~k~G~is~Iv~~~~~~vtt~~~~v~~vvTE~G  417 (455)
T 3qli_A          341 IDLTG-ACNSEHMLG--HQYSASGGQLDFVRGAYASKGGRSIIATPSTAAKGTVSRIIPRIDGPVTTPRIDTHYIVTEFG  417 (455)
T ss_dssp             EETTS-CEECCCSTT--CCCGGGSSHHHHHHHHHHSTTCEEEEECCSEETTTTEESEESCCSSSCSBCTTTCCEEEETTE
T ss_pred             EecCC-CeeeeccCC--eeecCcChhHHHHHHHhhcCCCcEEEEEeCccCCCCCCeEeccCCCCcccCcccccEEEeccE
Confidence            45666 456677764  7889999999999843    3369999999999998 99999999885 69999999999999


Q ss_pred             Ee
Q psy12544        133 FD  134 (140)
Q Consensus       133 v~  134 (140)
                      +.
T Consensus       418 va  419 (455)
T 3qli_A          418 AV  419 (455)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}

Probab=99.10  E-value=6.6e-12  Score=108.61  Aligned_cols=76  Identities=24%  Similarity=0.355  Sum_probs=62.5

Q ss_pred             cCCCcccccceeeeEecCCCceeecCCCceEEEecCC----CcEEEEEeecCCCCC-CccccCC---CCCccccccccEE
Q psy12544         56 ECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPS----TKVVVTMEHNTRDGG-HKILPEC---SLPLTGKQCVDLI  127 (140)
Q Consensus        56 ~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg----~~ViV~m~H~~k~G~-pKi~~~C---tlPlTg~~~V~~i  127 (140)
                      --..-++|. +.+|.+++  .+..|+||.+|++.++.    -|.|++|+||+|+|+ ||||++|   +.|+|++++||+|
T Consensus       307 a~evD~~G~-vn~~~~g~--~~~~G~GG~~D~~~gA~~~~ggk~ii~~~~t~k~G~iskiv~~~~~g~~v~t~~~~v~~v  383 (436)
T 2oas_A          307 ALQVDLTGQ-VCADSIGT--KIYSGVGGQMDFIRGAGLSEGGRSVIALPSTAAGGRISRIASVLSPGAGVVTTRAHVHYI  383 (436)
T ss_dssp             CSEEETTCC-EECSEETT--EECSCCTTHHHHHHHHHHSTTCEEEEECCSEETTTTEESEESSCCTTCCEEECTTTCCEE
T ss_pred             cceecCCCC-eeeeecCC--eeecccccHHHHhhhhhhcCCCcEEEEEeeecCCCCCCEEeeccCCCCCcccCcccCCEE
Confidence            334456664 44555655  68899999999999553    245999999999998 9999999   9999999999999


Q ss_pred             eecceEe
Q psy12544        128 ITEKRFD  134 (140)
Q Consensus       128 iTdlav~  134 (140)
                      |||+++.
T Consensus       384 vTE~Gva  390 (436)
T 2oas_A          384 VTEYGAA  390 (436)
T ss_dssp             EETTEEE
T ss_pred             ECCCEEE
Confidence            9999976

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2

Probab=99.02  E-value=4.4e-11  Score=105.43  Aligned_cols=73  Identities=19%  Similarity=0.337  Sum_probs=62.3

Q ss_pred             CcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecceEe
Q psy12544         59 LPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKRFD  134 (140)
Q Consensus        59 lPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdlav~  134 (140)
                      .-++|.-+++.+..+  .+..|+||.+|++.++. ++|++|+|++|+|+ ||||++|+.|+|.+++||+||||++|.
T Consensus       360 vD~~G~vn~~~~~g~--~~~~G~GG~~Df~~gA~-~sii~~~st~k~G~iskIv~~~~~v~t~~~~v~~vVTE~gva  433 (497)
T 2g39_A          360 FDIYGNVNSTHVGGT--KMMNGIGGSGDFARNAH-LAIFVTKSIAKGGNISSVVPMVSHVDHTEHDVDILVTEQGLA  433 (497)
T ss_dssp             EETTSCEESSEETTT--EECSCCTTHHHHHHHCS-EEEEECCSEEGGGTEESEESSCSSCSBCGGGCCEEEETTEEE
T ss_pred             ccCCCceeeeeccCC--cEEeccCcchhhhccCC-EEEEEEccccCCCCcCeEeeCCCCeecCCCceeEEECCCEEE
Confidence            345554444443454  68889999999999885 99999999999999 999999999999999999999999986

>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2

Probab=99.02  E-value=4.2e-11  Score=105.81  Aligned_cols=70  Identities=13%  Similarity=0.107  Sum_probs=59.8

Q ss_pred             ccccceeeeE-ecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEec
Q psy12544         61 LTGKQCVDLI-ITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDR  135 (140)
Q Consensus        61 lTg~~~VNwI-VTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~~  135 (140)
                      ++|. +.+|. +.+  .+..|+||+||++.+++ ++|++|+|+++ +.||||++|++|+|+.++||+||||++|..
T Consensus       375 ~~G~-vn~~~~~~g--~~~~G~GG~~D~~~gA~-~sii~~~~t~~-~~skIV~~~~~v~t~~~~V~~iVTE~Gva~  445 (509)
T 1xr4_A          375 VNFN-VNVMTGSNG--VLRGASGGHSDTAAGAD-LTIITAPLVRG-RIPCVVEKVLTTVTPGASVDVLVTDHGIAV  445 (509)
T ss_dssp             TTCC-EECSBCTTS--CBCSBCTTHHHHHHHSS-EEEEECCSEET-TEESBCSSCSSCSBCGGGCCEEEETTEEEE
T ss_pred             cCCc-eeeeeccCC--eEecccccHHHHhhccC-eEEEEEcccCC-CCCeEeeCCCCcccCcCeeCEEECCcEEEE
Confidence            4443 34555 565  68899999999999885 99999999985 789999999999999999999999999874

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}

Probab=98.94  E-value=8.3e-11  Score=101.24  Aligned_cols=68  Identities=22%  Similarity=0.369  Sum_probs=45.2

Q ss_pred             ceeeeEecCCCceeecCCCceEEEecCC----CcEEEEEeecCCCCC-CccccCC---CCCccccccccEEeecceEe
Q psy12544         65 QCVDLIITEKGKMVKGMGGAMDLVAAPS----TKVVVTMEHNTRDGG-HKILPEC---SLPLTGKQCVDLIITEKRFD  134 (140)
Q Consensus        65 ~~VNwIVTg~aVfVkG~GGaMdLveapg----~~ViV~m~H~~k~G~-pKi~~~C---tlPlTg~~~V~~iiTdlav~  134 (140)
                      ++.+|.+.+  .+..|+||.+|++.++.    .|+|++|+|++|+|+ |||+++|   ++|+|..++||+||||+++.
T Consensus       321 ~vn~~~~g~--~~~~G~GG~~D~~~~A~~s~~gk~ii~~~~t~k~G~~s~iv~~~~~g~~v~~~~~~v~~vVTE~gva  396 (439)
T 3d3u_A          321 QAASESIGY--EQFSGSGGQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVA  396 (439)
T ss_dssp             CC----------------CHHHHHHHHTTSTTCEEEEECCSEETTTTEESEESSCC------CCSTTCSEEEETTEEE
T ss_pred             CEeeeccCC--eeecccccHHHHhhcccccCCCeEEEEEeeecCCCCCCeEeECccCCCCceeCCCcceEEECCCEEE
Confidence            344566654  67899999999999542    289999999999999 9999999   69999999999999999987

>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}

Probab=98.94  E-value=1.4e-10  Score=102.36  Aligned_cols=72  Identities=19%  Similarity=0.304  Sum_probs=61.9

Q ss_pred             cccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecceEe
Q psy12544         60 PLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKRFD  134 (140)
Q Consensus        60 PlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdlav~  134 (140)
                      -++|.-+++.+.++  .+..|+||.+|++.+++ ++|++|+||+|+|+ ||||++|+.+.|.+++||.||||++|.
T Consensus       357 D~~G~vn~~~~~g~--~~~~G~GG~~Df~~gA~-~si~~~~st~k~G~is~iV~~~~~v~~~~~~v~~vVTE~Gva  429 (506)
T 2nvv_A          357 DIFGNINSTHVSGT--RMMNGIGGSGDFTRNSY-VSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVA  429 (506)
T ss_dssp             ETTSCEECSEETTT--EECSCCTTHHHHHHHSS-SEEEECCSEEGGGTEESEESSCSSCSBCTTTCCEEEETTEEE
T ss_pred             cCCCceeeeeccCC--ceEcccCcHHHHhhccC-eEEEEeccccCCCCCCeEEeCCCCcccCCCceeEEECCCEEE
Confidence            45554444444465  67889999999999885 99999999999998 999999999999999999999999986

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*

Probab=98.93  E-value=1.5e-10  Score=102.57  Aligned_cols=58  Identities=26%  Similarity=0.359  Sum_probs=53.7

Q ss_pred             ceeecCCCceEEEecCCCcEEEEEeecCC-------CC---------CCccccCCC-CCcccc-----ccccEEeecceE
Q psy12544         76 KMVKGMGGAMDLVAAPSTKVVVTMEHNTR-------DG---------GHKILPECS-LPLTGK-----QCVDLIITEKRF  133 (140)
Q Consensus        76 VfVkG~GGaMdLveapg~~ViV~m~H~~k-------~G---------~pKi~~~Ct-lPlTg~-----~~V~~iiTdlav  133 (140)
                      ...+|+||++|++.+++ ++|++|+|++|       +|         .||||++|+ +|+||.     ++|++||||+||
T Consensus       394 ~~~~G~GG~~D~~~gA~-~~i~~~~~t~~g~~~~~~~g~l~i~~eg~~~kiV~~v~~v~~~G~~~~~~~~v~~vVTE~gV  472 (531)
T 2ahu_A          394 GKIMGTGGFIDISATSK-KIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAV  472 (531)
T ss_dssp             TEECBCTTHHHHHTTCS-EEEEECCSEESSCEEEECSSCEEEEECCSEESEESCCSSCSBCHHHHHHTTCEEEEECSSEE
T ss_pred             CceecCCcchhhhcCCC-eEEEEeccccCCceeeecCCeEEEeccCCCceECCCCccCCCCCcccccCCCcEEEECCCEE
Confidence            46799999999999886 99999999999       56         699999999 999998     899999999998


Q ss_pred             e
Q psy12544        134 D  134 (140)
Q Consensus       134 ~  134 (140)
                      +
T Consensus       473 ~  473 (531)
T 2ahu_A          473 F  473 (531)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*

Probab=98.92  E-value=1.3e-10  Score=101.61  Aligned_cols=74  Identities=24%  Similarity=0.366  Sum_probs=62.4

Q ss_pred             CCcccccceeeeEecCCCceeecCCCceEEEecC----C--CcEEEEEeecCCCC---C-CccccCCCC---Cccccccc
Q psy12544         58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAP----S--TKVVVTMEHNTRDG---G-HKILPECSL---PLTGKQCV  124 (140)
Q Consensus        58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveap----g--~~ViV~m~H~~k~G---~-pKi~~~Ctl---PlTg~~~V  124 (140)
                      ..-|+|. +.+|.+++  .+..|+||.+|++.++    +  .|+|++|+||+|+|   + ||||++|+.   ++|.+++|
T Consensus       314 evD~~G~-vns~~~g~--~~~~G~GG~~Df~~gA~~s~g~~~k~Ii~~~st~k~G~g~~is~IV~~~~~g~~v~t~~~~v  390 (448)
T 3gk7_A          314 QVDFMGQ-IVSDSIGT--KQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDA  390 (448)
T ss_dssp             EEETTCC-EECSEETT--EECSCCTTHHHHHHHHHTCTTSCCEEEEECCSEEECTTSCEEESEESSCCTTCCCSBCTTTC
T ss_pred             eeccCCC-eeeeccCC--ceecccCchHHHhcchhhccCCCCcEEEEEeeeecCCCCCCCCeEeecCCCCCCceeCcCce
Confidence            3456665 44666654  6788999999999955    2  39999999999999   5 999999999   99999999


Q ss_pred             cEEeecceEe
Q psy12544        125 DLIITEKRFD  134 (140)
Q Consensus       125 ~~iiTdlav~  134 (140)
                      |.||||+++.
T Consensus       391 ~~iVTE~Gva  400 (448)
T 3gk7_A          391 DYVVTEYGIA  400 (448)
T ss_dssp             CEEEETTEEE
T ss_pred             EEEEeceEEE
Confidence            9999999976

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}

Probab=98.89  E-value=2.1e-10  Score=101.69  Aligned_cols=67  Identities=16%  Similarity=0.120  Sum_probs=58.4

Q ss_pred             ceeeeE-ecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEec
Q psy12544         65 QCVDLI-ITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDR  135 (140)
Q Consensus        65 ~~VNwI-VTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~~  135 (140)
                      .+.+|. +.+  .+..|+||++|++.+++ ++|++|+|+ +.+.||||++|++|+|..++||+||||++|..
T Consensus       382 nvn~~~~~gg--~~~~G~GG~~D~~~gA~-~~ii~~~~t-~g~~skiV~~~~~vtt~~~~V~~VVTE~Gva~  449 (519)
T 2hj0_A          382 NVNVMTGSDG--VIRGASGGHCDTAFAAK-MSLVISPLV-RGRIPTFVDKVNTVITPGTSVDVVVTEVGIAI  449 (519)
T ss_dssp             CEECSBCTTC--CBCCBCTTHHHHHHHSS-EEEEECCSE-ETTEESBCSSCSSCSBCGGGCCEEECSSCEEE
T ss_pred             ceeeeeccCC--eEecccccHHHHhhccC-eEEEEEccc-CCCCCeeccCCCCcccCCCCCCEEECCCEEEE
Confidence            345566 555  67899999999999885 999999999 56789999999999999999999999999874

>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*

Probab=98.87  E-value=4.6e-10  Score=98.62  Aligned_cols=78  Identities=22%  Similarity=0.273  Sum_probs=67.2

Q ss_pred             CCcccccccCCCccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCceeecCCCceE
Q psy12544          8 GNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMD   86 (140)
Q Consensus         8 g~~~~~w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMd   86 (140)
                      |++..++..+++++.|+||.+|++.|| ++.|+++.+++|+|+ ||||+.|+.+.|.+..|++||||.|+...-   |+.
T Consensus       370 GqVns~~~~g~~~~sG~GG~~Df~~gA-~~si~~~~st~k~g~is~ivp~~~~v~~~~~~v~~vVTE~Gva~Lr---G~s  445 (514)
T 4eu9_A          370 GNVNSTRVMGSKMMNGIGGSGDFARSS-YLSIFLSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQGLADLR---GLS  445 (514)
T ss_dssp             CCEESSEETTTEECSCCTTHHHHHHHS-SEEEEECCSEETTTTEESEESSCSSCSBCGGGCCEEEETTEEEECT---TCC
T ss_pred             CceeeeeccCcceecCccchHHHhhcc-CcEEEEEeeecCCCcccccccCCCCccCCCCcCCEEEcCCEEEEec---CCC
Confidence            455444344778899999999999999 899999999999998 999999999999999999999999998752   355


Q ss_pred             EEe
Q psy12544         87 LVA   89 (140)
Q Consensus        87 Lve   89 (140)
                      +.|
T Consensus       446 ~~e  448 (514)
T 4eu9_A          446 PVQ  448 (514)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3

Probab=98.73  E-value=1.6e-09  Score=88.72  Aligned_cols=58  Identities=22%  Similarity=0.423  Sum_probs=51.7

Q ss_pred             eeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCC----------------CCcccc-ccccEEeec
Q psy12544         68 DLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECS----------------LPLTGK-QCVDLIITE  130 (140)
Q Consensus        68 NwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~Ct----------------lPlTg~-~~V~~iiTd  130 (140)
                      ||..++  +..+|+||++|++.+++ ++|++ +|+.|    ||+++|+                +|+|+. ++ ++||||
T Consensus       122 ~~~~p~--~~~~G~GGa~D~~~~A~-~~iv~-~h~~r----k~V~~v~~vt~~G~~~~~~~r~~~~~t~~r~~-~~vVTe  192 (260)
T 1poi_B          122 DYHHPK--TRFTGSGGANGIATYSN-TIIMM-QHEKR----RFMNKIDYVTSPGWIDGPGGRERLGLPGDVGP-QLVVTD  192 (260)
T ss_dssp             CSSSEE--EECCCCTTHHHHHHHSC-EEEEC-CCCTT----TBCSSCSCCSBCCSTTSTTHHHHTTCCTTCCE-EEEEET
T ss_pred             CcCCCc--eEeecccchHHHHhCCC-EEEEE-ECCCC----eecccCceeeccCcccccccccccccccCCCC-CEEEeC
Confidence            788886  67899999999999875 89999 99865    9999999                999998 55 999999


Q ss_pred             ceEe
Q psy12544        131 KRFD  134 (140)
Q Consensus       131 lav~  134 (140)
                      +||+
T Consensus       193 ~gV~  196 (260)
T 1poi_B          193 KGIL  196 (260)
T ss_dssp             TEEE
T ss_pred             ceEE
Confidence            9987

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}

Probab=98.65  E-value=1.9e-09  Score=93.70  Aligned_cols=74  Identities=24%  Similarity=0.390  Sum_probs=61.1

Q ss_pred             CCcccccceeeeEecCCCceeecCCCceEEEecC----CCcEEEEEeecCCCCC-CccccCCCC---CccccccccEEee
Q psy12544         58 SLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAP----STKVVVTMEHNTRDGG-HKILPECSL---PLTGKQCVDLIIT  129 (140)
Q Consensus        58 tlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveap----g~~ViV~m~H~~k~G~-pKi~~~Ctl---PlTg~~~V~~iiT  129 (140)
                      ..-|+|.-++ |.+.+  .+..|+||.+|++.++    +-|.|++|+||+|+|+ ||||++|+.   +.|.+.+||+|||
T Consensus       318 evD~~G~vn~-~~~g~--~~~~G~GG~~Df~~ga~~s~ggk~ii~~~st~~~G~is~iv~~~~~g~~v~~~~~~v~~vVT  394 (434)
T 3eh7_A          318 EIDLMGQVVS-ECIGS--KQFSGTGGQVDYVRGAAWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVT  394 (434)
T ss_dssp             EEETTCCEEC-CSTTS--CCSBCCCTHHHHHHHHHHSTTCEEEEECCSEETTTTEESEESSCCTTCCEEECTTTCCEEEE
T ss_pred             eeccCCCeee-eccCC--eeecccCchHHHhccccccCCCceEEEEeeecCCCCCCeEeeCCCCCCCceeCccceeEEEc
Confidence            3456665554 44454  6778999999999843    2356999999999999 999999999   9999999999999


Q ss_pred             cceEe
Q psy12544        130 EKRFD  134 (140)
Q Consensus       130 dlav~  134 (140)
                      |+++.
T Consensus       395 E~Gva  399 (434)
T 3eh7_A          395 EYGIA  399 (434)
T ss_dssp             TTEEE
T ss_pred             ccEEE
Confidence            99987

>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*

Probab=98.12  E-value=7e-07  Score=78.43  Aligned_cols=78  Identities=17%  Similarity=0.228  Sum_probs=68.1

Q ss_pred             cccCCCcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecce
Q psy12544         54 LPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKR  132 (140)
Q Consensus        54 ~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdla  132 (140)
                      +.--..-|+|.-+++++...  .+..|.||.+|++.++. +.|+++.+++|+|+ ||||+.|+-+.|.+..||.|+||.+
T Consensus       361 n~a~EvDl~GqVns~~~~g~--~~~sG~GG~~Df~~gA~-~si~~~~st~k~g~is~ivp~~~~v~~~~~~v~~vVTE~G  437 (514)
T 4eu9_A          361 NGMIEADIYGNVNSTRVMGS--KMMNGIGGSGDFARSSY-LSIFLSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQG  437 (514)
T ss_dssp             ECCSEEETTCCEESSEETTT--EECSCCTTHHHHHHHSS-EEEEECCSEETTTTEESEESSCSSCSBCGGGCCEEEETTE
T ss_pred             ecceEecccCceeeeeccCc--ceecCccchHHHhhccC-cEEEEEeeecCCCcccccccCCCCccCCCCcCCEEEcCCE
Confidence            44455668888888888665  56779999999999885 89999999999998 9999999999999999999999999


Q ss_pred             Ee
Q psy12544        133 FD  134 (140)
Q Consensus       133 v~  134 (140)
                      +-
T Consensus       438 va  439 (514)
T 4eu9_A          438 LA  439 (514)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1xr4a2	269	c.124.1.2 (A:237-505) Putative citrate lyase alpha	2e-14
d1xr4a2	269	c.124.1.2 (A:237-505) Putative citrate lyase alpha	4e-12
d1ooya1	221	c.124.1.3 (A:261-481) Succinate:CoA transferase, C	1e-09
d1ooya1	221	c.124.1.3 (A:261-481) Succinate:CoA transferase, C	3e-08
d2g39a2	274	c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445	4e-09
d2g39a2	274	c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445	8e-08
d1poib_	260	c.124.1.3 (B:) Glutaconate:CoA transferase beta {A	8e-09
d1poib_	260	c.124.1.3 (B:) Glutaconate:CoA transferase beta {A	2e-07

>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 8   GNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCV 67
            N    T   G +    GG  D  A     + +      R     ++ +    +T    V
Sbjct: 138 FNVNVMTGSNGVLRGASGGHSDTAAG--ADLTIITAPLVRGRIPCVVEKVLTTVTPGASV 195

Query: 68  DLIITEKGKMVKGMGGAMDLVA 89
           D+++T+ G  V      +    
Sbjct: 196 DVLVTDHGIAVNPARQDLLDNL 217

>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]

 Score = 59.1 bits (143), Expect = 4e-12
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
           G +    GG  D  A     + +      R     ++ +    +T    VD+++T+
Sbjct: 148 GVLRGASGGHSDTAAG--ADLTIITAPLVRGRIPCVVEKVLTTVTPGASVDVLVTD 201

>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Succinate:CoA transferase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 52.4 bits (125), Expect = 1e-09
 Identities = 42/72 (58%), Positives = 53/72 (73%)

Query: 17  PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGK 76
           PGK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITEK  
Sbjct: 117 PGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAV 176

Query: 77  MVKGMGGAMDLV 88
                   + L+
Sbjct: 177 FDVDRKKGLTLI 188

>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Succinate:CoA transferase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 48.2 bits (114), Expect = 3e-08
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITE 130
           GK+VKGMGGAMDLV++  TKVVVTMEH+ +   HKI+ +C+LPLTGKQCV+ IITE
Sbjct: 118 GKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITE 173

>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 8   GNSADTTPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGH-KILPECSLPLTGKQC 66
           GN   T     KM+ G+GG+ D     +   +   +   + G    ++P  S     +  
Sbjct: 141 GNVNSTHVGGTKMMNGIGGSGDFARN-AHLAIFVTKSIAKGGNISSVVPMVSHVDHTEHD 199

Query: 67  VDLIITEKG 75
           VD+++TE+G
Sbjct: 200 VDILVTEQG 208

>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.2 bits (112), Expect = 8e-08
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGH-KILPECSLPLTGKQCVDLIITE 130
            KM+ G+GG+ D     +   +   +   + G    ++P  S     +  VD+++TE
Sbjct: 151 TKMMNGIGGSGDFARN-AHLAIFVTKSIAKGGNISSVVPMVSHVDHTEHDVDILVTE 206

>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Glutaconate:CoA transferase beta
species: Acidaminococcus fermentans [TaxId: 905]

 Score = 50.0 bits (119), Expect = 8e-09
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 15/88 (17%)

Query: 15  PDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRD------------GGHKILPECSLPLT 62
             P     G GGA  +    +T ++  M+H  R                       L L 
Sbjct: 124 HHPKTRFTGSGGANGIATYSNTIIM--MQHEKRRFMNKIDYVTSPGWIDGPGGRERLGLP 181

Query: 63  GKQCVDLIITEKGKM-VKGMGGAMDLVA 89
           G     L++T+KG +        M L A
Sbjct: 182 GDVGPQLVVTDKGILKFDEKTKRMYLAA 209

>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Glutaconate:CoA transferase beta
species: Acidaminococcus fermentans [TaxId: 905]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 14/69 (20%)

Query: 75  GKMVKGMGGAMDLVAAPSTKVVVTMEHNTRD------------GGHKILPECSLPLTGKQ 122
                G GGA  +    +T ++  M+H  R                       L L G  
Sbjct: 127 KTRFTGSGGANGIATYSNTIIM--MQHEKRRFMNKIDYVTSPGWIDGPGGRERLGLPGDV 184

Query: 123 CVDLIITEK 131
              L++T+K
Sbjct: 185 GPQLVVTDK 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1poib_	260	Glutaconate:CoA transferase beta {Acidaminococcus	99.59
d1ooya1	221	Succinate:CoA transferase, C-terminal domain {Pig	99.53
d2ahua1	247	Putative enzyme YdiF C-terminal domain {Escherichi	99.51
d2g39a2	274	Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin	98.95
d1xr4a2	269	Putative citrate lyase alpha chain, citF2 {Salmone	98.85
d1poib_	260	Glutaconate:CoA transferase beta {Acidaminococcus	98.57
d1ooya1	221	Succinate:CoA transferase, C-terminal domain {Pig	98.53
d2ahua1	247	Putative enzyme YdiF C-terminal domain {Escherichi	98.24
d1xr4a2	269	Putative citrate lyase alpha chain, citF2 {Salmone	98.15
d2g39a2	274	Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin	98.07

>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Glutaconate:CoA transferase beta
species: Acidaminococcus fermentans [TaxId: 905]

Probab=99.59  E-value=7e-17  Score=130.03  Aligned_cols=105  Identities=22%  Similarity=0.248  Sum_probs=83.6

Q ss_pred             eeeeecCCcccc--------------------cccCCCccccccccceeeecCCCeEEEEeeecCCC------------C
Q psy12544          2 FNILRGGNSADT--------------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRD------------G   49 (140)
Q Consensus         2 f~~ir~g~~~~~--------------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~------------G   49 (140)
                      |.++|||++|..                    |..|++.+||+||||||+++| |++|+ |+|..|.            .
T Consensus        91 F~~~~~G~~d~~fLG~~QVD~~GNvN~s~iG~~~~p~~rl~G~GGa~di~~~a-~~ii~-~~h~~r~fV~~vd~vt~~G~  168 (260)
T d1poib_          91 NEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANGIATYS-NTIIM-MQHEKRRFMNKIDYVTSPGW  168 (260)
T ss_dssp             HHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHHHHHHS-CEEEE-CCCCTTTBCSSCSCCSBCCS
T ss_pred             HHHHhcCCcceEEecccccCcccceeecccccccCCCccccCCCccchhhhcC-ceEEE-eccCccccccccceeccCCC
Confidence            667788887764                    888999999999999999999 78775 7896544            3


Q ss_pred             CccccccCCCcccccceeeeEecCCCceeecC-CCceEEEe-cCCCcEEEEEeecCCCCCCccccCCCCCccc
Q psy12544         50 GHKILPECSLPLTGKQCVDLIITEKGKMVKGM-GGAMDLVA-APSTKVVVTMEHNTRDGGHKILPECSLPLTG  120 (140)
Q Consensus        50 ~pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~-GGaMdLve-apg~~ViV~m~H~~k~G~pKi~~~CtlPlTg  120 (140)
                      .+|...+|.+|||+.+++.++|||+|||+... ++.|.|.| +|+..+           + =|++++.++|.=
T Consensus       169 ~~~~~~r~~~gl~~~~~~~~vVT~l~Vf~f~~~~~~l~L~ei~PGvt~-----------e-dV~~~tgf~l~i  229 (260)
T d1poib_         169 IDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRMYLAAYYPTSSP-----------E-DVLENTGFDLDV  229 (260)
T ss_dssp             TTSTTHHHHTTCCTTCCEEEEEETTEEEEECTTTCCEEEEEECTTCCH-----------H-HHHHTCSSCCCC
T ss_pred             ccccccccccCccCCCCcceEEeccEEEEEeCCCCeEEEEEeCCCCCH-----------H-HHHHhcCCCeee
Confidence            67888899999999999999999999998743 66799999 887222           1 366666666643

>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Succinate:CoA transferase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.53  E-value=1.8e-15  Score=116.69  Aligned_cols=79  Identities=53%  Similarity=0.807  Sum_probs=72.5

Q ss_pred             cccCCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccceeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544         14 TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVA-APS   92 (140)
Q Consensus        14 w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLve-apg   92 (140)
                      |.+|++..+|.||++|+++++++.++++++|+.|.+.+|+...|..++|++++++++|||+|+|...-..+|.|.+ +|+
T Consensus       114 ~~~p~~~~~G~GG~~d~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vVTe~gv~~~~~~~~l~L~~i~pg  193 (221)
T d1ooya1         114 WMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEG  193 (221)
T ss_dssp             SCCSSSCCCCCTTHHHHTCCTTSEEEEECCSBCGGGCBSEESSCSSCCSBSSCCCEEECSSEEEEEETTTEEEEEEECTT
T ss_pred             eecCCccccCcccchhhhhccCceEEEEeeccccCCCcccceEecccccCcccceEEecccEEEEecCCCeEEEEEeCCC
Confidence            6899999999999999999996677888899999999999999999999999999999999999874356799999 887

>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Putative enzyme YdiF C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.6e-15  Score=120.99  Aligned_cols=88  Identities=23%  Similarity=0.305  Sum_probs=76.2

Q ss_pred             eeeeecCCcccc---------------cccCCCccccccccceeeecCCCeEEEEeeec---------------CCCCCc
Q psy12544          2 FNILRGGNSADT---------------TPDPGKMVKGMGGAMDLVAAPSTKVVVTMEHN---------------TRDGGH   51 (140)
Q Consensus         2 f~~ir~g~~~~~---------------w~ipgk~v~gmGGAMDLv~ga~~~viv~m~H~---------------~k~G~p   51 (140)
                      |.++|+|++|..               |.+|++ .+|+|||||++++| +++++.|+|+               +++|++
T Consensus        81 f~~~~~g~~dv~~lga~QVD~~GnvN~s~iG~~-~~G~GG~~D~~~gA-~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~  158 (247)
T d2ahua1          81 FDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGK-IMGTGGFIDISATS-KKIIFCGTLTAGSLKTEIADGKLNIVQEGRV  158 (247)
T ss_dssp             HHHHHTTCCSEEEEECSEEETTSCEECSEETTE-ECBCTTHHHHHTTC-SEEEEECCSEESSCEEEECSSCEEEEECCSE
T ss_pred             eeeEecCCeeEEEechhhcCcccccchhccCCc-ccCccccchhhcCc-ceEEEcccccccceeEEeccceEEEeecCCc
Confidence            667777777654               789987 58999999999999 9999999997               567899


Q ss_pred             cccccCCCcccc-------cceeeeEecCCCceeecCCCceEEEe-cCC
Q psy12544         52 KILPECSLPLTG-------KQCVDLIITEKGKMVKGMGGAMDLVA-APS   92 (140)
Q Consensus        52 Ki~~~ctlPlTg-------~~~VNwIVTg~aVfVkG~GGaMdLve-apg   92 (140)
                      |.+.+|..++|.       ++++.++|||+|||... .++|.|.| +|+
T Consensus       159 ~~~~~~v~~it~~~~~~~~~g~~~~vITe~~Vf~~~-~~~l~L~ei~PG  206 (247)
T d2ahua1         159 KKFIRELPEITFSGKIALERGLDVRYITERAVFTLK-EDGLHLIEIAPG  206 (247)
T ss_dssp             ESEESCCSSCSBCHHHHHHTTCEEEEECSSEEEEEE-TTEEEEEEECTT
T ss_pred             ccccccccccccccccccccCCceEEEcCcEEEEEe-CCeEEEEEeCCC
Confidence            999999999996       56899999999999886 45799999 887

>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.95  E-value=5.4e-11  Score=96.84  Aligned_cols=70  Identities=26%  Similarity=0.401  Sum_probs=63.2

Q ss_pred             CCcccccccCC-CccccccccceeeecCCCeEEEEeeecCCCCC-ccccccCCCcccccceeeeEecCCCceee
Q psy12544          8 GNSADTTPDPG-KMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKGKMVK   79 (140)
Q Consensus         8 g~~~~~w~ipg-k~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~-pKi~~~ctlPlTg~~~VNwIVTg~aVfVk   79 (140)
                      |+++. |+++| +.+.|+||++|++.|| ++.|++|.++.|+|+ ||||++|+-+.|.+..|++||||.|+.+.
T Consensus       141 Gqvns-e~i~G~r~~sG~GGq~DF~rGA-~~sIial~st~k~g~iS~IVp~~t~vttpr~dVd~VVTEyGiA~L  212 (274)
T d2g39a2         141 GNVNS-THVGGTKMMNGIGGSGDFARNA-HLAIFVTKSIAKGGNISSVVPMVSHVDHTEHDVDILVTEQGLADL  212 (274)
T ss_dssp             SCEES-SEETTTEECSCCTTHHHHHHHC-SEEEEECCSEEGGGTEESEESSCSSCSBCGGGCCEEEETTEEEEC
T ss_pred             CcEEE-eecCCcceecCCcchHHHHhcC-CeEEEEeecccCCCCcCcEeCCCCCccCCCceeeEEEeCceEEEe
Confidence            45544 59987 6799999999999999 899999999999998 89999999999999999999999988765

>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.85  E-value=2.7e-10  Score=92.00  Aligned_cols=63  Identities=19%  Similarity=0.234  Sum_probs=55.3

Q ss_pred             ccc-CCCccccccccceeeecCCCeEEEEeeecCCCCCccccccCCCcccccceeeeEecCCCcee
Q psy12544         14 TPD-PGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMV   78 (140)
Q Consensus        14 w~i-pgk~v~gmGGAMDLv~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~VNwIVTg~aVfV   78 (140)
                      |++ +|+.+.|+||++|++.|| +.. +.+.|.++.+.|||+++|+.|.|...+++.++||.|+.+
T Consensus       143 ~~~~~g~~~sG~GG~~Df~rGA-~~s-i~~~~~~~~~~s~iv~~~t~~~t~~~~vdviVTE~G~av  206 (269)
T d1xr4a2         143 MTGSNGVLRGASGGHSDTAAGA-DLT-IITAPLVRGRIPCVVEKVLTTVTPGASVDVLVTDHGIAV  206 (269)
T ss_dssp             SBCTTSCBCSBCTTHHHHHHHS-SEE-EEECCSEETTEESBCSSCSSCSBCGGGCCEEEETTEEEE
T ss_pred             EEecCCcccCCCccHHHHhcCc-eeE-EEeeccccCCCCeEccCCccccCCCcceeEEEccCceEE
Confidence            777 578899999999999999 555 455677788999999999999999999999999988754

>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Glutaconate:CoA transferase beta
species: Acidaminococcus fermentans [TaxId: 905]

Probab=98.57  E-value=5.1e-09  Score=83.51  Aligned_cols=88  Identities=18%  Similarity=0.160  Sum_probs=62.6

Q ss_pred             cccceee-ecCCCeEEEEeeecCCCCCccccccCCCcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecC
Q psy12544         25 GGAMDLV-AAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNT  103 (140)
Q Consensus        25 GGAMDLv-~ga~~~viv~m~H~~k~G~pKi~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~  103 (140)
                      ||..|+. -|+        -..|+.|+-=+        |.  --||..+.  +..+|.||+++++..++ +||+ |+|..
T Consensus        96 ~G~~d~~fLG~--------~QVD~~GNvN~--------s~--iG~~~~p~--~rl~G~GGa~di~~~a~-~ii~-~~h~~  153 (260)
T d1poib_          96 KANRLIAFIGG--------AQIDPYGNVNS--------TS--IGDYHHPK--TRFTGSGGANGIATYSN-TIIM-MQHEK  153 (260)
T ss_dssp             TCCCEEEEECC--------SEECTTCCEEC--------SE--EECSSSEE--EECCCCTTHHHHHHHSC-EEEE-CCCCT
T ss_pred             cCCcceEEecc--------cccCcccceee--------cc--cccccCCC--ccccCCCccchhhhcCc-eEEE-eccCc
Confidence            5666764 355        45688886211        11  12454444  45689999999998764 6664 78965


Q ss_pred             CC------------CCCccccCCCCCccccccccEEeecceEe
Q psy12544        104 RD------------GGHKILPECSLPLTGKQCVDLIITEKRFD  134 (140)
Q Consensus       104 k~------------G~pKi~~~CtlPlTg~~~V~~iiTdlav~  134 (140)
                      |.            ..+|...+|.+|||+.+++++||||+||+
T Consensus       154 r~fV~~vd~vt~~G~~~~~~~r~~~gl~~~~~~~~vVT~l~Vf  196 (260)
T d1poib_         154 RRFMNKIDYVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGIL  196 (260)
T ss_dssp             TTBCSSCSCCSBCCSTTSTTHHHHTTCCTTCCEEEEEETTEEE
T ss_pred             cccccccceeccCCCccccccccccCccCCCCcceEEeccEEE
Confidence            54            36677888899999999999999999996

>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Succinate:CoA transferase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.53  E-value=1.1e-08  Score=78.13  Aligned_cols=60  Identities=65%  Similarity=1.015  Sum_probs=53.9

Q ss_pred             ceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecceEec
Q psy12544         76 KMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKRFDR  135 (140)
Q Consensus        76 VfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdlav~~  135 (140)
                      +..+|.||+.|++..+++.++++++|+.|.+.+|+...|..++|+++++++||||+||+.
T Consensus       119 ~~~~G~GG~~d~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vVTe~gv~~  178 (221)
T d1ooya1         119 KLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFD  178 (221)
T ss_dssp             SCCCCCTTHHHHTCCTTSEEEEECCSBCGGGCBSEESSCSSCCSBSSCCCEEECSSEEEE
T ss_pred             ccccCcccchhhhhccCceEEEEeeccccCCCcccceEecccccCcccceEEecccEEEE
Confidence            456899999999996655788888999999999999999999999999999999999873

>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Putative enzyme YdiF C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1.3e-07  Score=74.55  Aligned_cols=66  Identities=18%  Similarity=0.129  Sum_probs=55.2

Q ss_pred             ceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeec---------------CCCCCCccccCCCCCccc-------cc
Q psy12544         65 QCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHN---------------TRDGGHKILPECSLPLTG-------KQ  122 (140)
Q Consensus        65 ~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~---------------~k~G~pKi~~~CtlPlTg-------~~  122 (140)
                      ++.+|.+.+   ..+|.||++|++.+++ ++++.|+|+               +++|++|.+.+|..++|.       ++
T Consensus       104 nvN~s~iG~---~~~G~GG~~D~~~gA~-~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~it~~~~~~~~~g  179 (247)
T d2ahua1         104 NVGVHKFNG---KIMGTGGFIDISATSK-KIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERG  179 (247)
T ss_dssp             CEECSEETT---EECBCTTHHHHHTTCS-EEEEECCSEESSCEEEECSSCEEEEECCSEESEESCCSSCSBCHHHHHHTT
T ss_pred             ccchhccCC---cccCccccchhhcCcc-eEEEcccccccceeEEeccceEEEeecCCcccccccccccccccccccccC
Confidence            355566666   3579999999999885 999999997               467889999999999996       56


Q ss_pred             cccEEeecceEe
Q psy12544        123 CVDLIITEKRFD  134 (140)
Q Consensus       123 ~V~~iiTdlav~  134 (140)
                      ++.+||||+||+
T Consensus       180 ~~~~vITe~~Vf  191 (247)
T d2ahua1         180 LDVRYITERAVF  191 (247)
T ss_dssp             CEEEEECSSEEE
T ss_pred             CceEEEcCcEEE
Confidence            899999999987

>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.15  E-value=2.1e-07  Score=74.73  Aligned_cols=78  Identities=14%  Similarity=0.131  Sum_probs=62.4

Q ss_pred             ccccCCCcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCCCccccCCCCCccccccccEEeecce
Q psy12544         53 ILPECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGGHKILPECSLPLTGKQCVDLIITEKR  132 (140)
Q Consensus        53 i~~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~pKi~~~CtlPlTg~~~V~~iiTdla  132 (140)
                      |+.....-|+|.-.++.+-.+  .+..|.||.+|++.++.  ..+.+.|.++.+.|||+++|+.|.|...+||.|+||.+
T Consensus       128 InsAlEVDl~Gnvn~~~~~~g--~~~sG~GG~~Df~rGA~--~si~~~~~~~~~~s~iv~~~t~~~t~~~~vdviVTE~G  203 (269)
T d1xr4a2         128 MLSALEIDVNFNVNVMTGSNG--VLRGASGGHSDTAAGAD--LTIITAPLVRGRIPCVVEKVLTTVTPGASVDVLVTDHG  203 (269)
T ss_dssp             EECCSEECTTCCEECSBCTTS--CBCSBCTTHHHHHHHSS--EEEEECCSEETTEESBCSSCSSCSBCGGGCCEEEETTE
T ss_pred             EeeeeeeccCCceEEEEecCC--cccCCCccHHHHhcCce--eEEEeeccccCCCCeEccCCccccCCCcceeEEEccCc
Confidence            466667788888555444333  56778899999999873  45566788888999999999999999999999999998


Q ss_pred             Ee
Q psy12544        133 FD  134 (140)
Q Consensus       133 v~  134 (140)
                      +.
T Consensus       204 ~a  205 (269)
T d1xr4a2         204 IA  205 (269)
T ss_dssp             EE
T ss_pred             eE
Confidence            64

>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.07  E-value=3.7e-07  Score=73.81  Aligned_cols=77  Identities=18%  Similarity=0.326  Sum_probs=63.3

Q ss_pred             ccCCCcccccceeeeEecCCCceeecCCCceEEEecCCCcEEEEEeecCCCCC-CccccCCCCCccccccccEEeecceE
Q psy12544         55 PECSLPLTGKQCVDLIITEKGKMVKGMGGAMDLVAAPSTKVVVTMEHNTRDGG-HKILPECSLPLTGKQCVDLIITEKRF  133 (140)
Q Consensus        55 ~~ctlPlTg~~~VNwIVTg~aVfVkG~GGaMdLveapg~~ViV~m~H~~k~G~-pKi~~~CtlPlTg~~~V~~iiTdlav  133 (140)
                      ..-..-|+|.-+ ++.+.+ ..+.-|+||.+|.+.+++ +.|++|.++.|+|+ ||||++|+-+.|-+..||.|+||.++
T Consensus       133 sAlEVDL~Gqvn-se~i~G-~r~~sG~GGq~DF~rGA~-~sIial~st~k~g~iS~IVp~~t~vttpr~dVd~VVTEyGi  209 (274)
T d2g39a2         133 TALEFDIYGNVN-STHVGG-TKMMNGIGGSGDFARNAH-LAIFVTKSIAKGGNISSVVPMVSHVDHTEHDVDILVTEQGL  209 (274)
T ss_dssp             ECSEEETTSCEE-SSEETT-TEECSCCTTHHHHHHHCS-EEEEECCSEEGGGTEESEESSCSSCSBCGGGCCEEEETTEE
T ss_pred             hhhecccCCcEE-EeecCC-cceecCCcchHHHHhcCC-eEEEEeecccCCCCcCcEeCCCCCccCCCceeeEEEeCceE
Confidence            445566787644 444444 246679999999999886 89999999999998 89999999999999999999999986


Q ss_pred             e
Q psy12544        134 D  134 (140)
Q Consensus       134 ~  134 (140)
                      -
T Consensus       210 A  210 (274)
T d2g39a2         210 A  210 (274)
T ss_dssp             E
T ss_pred             E
Confidence            5