Psyllid ID: psy12564

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030---
MDLFRLGNEVIVLVLDLLCVYCTLVSDNSSVPCLIQDNGAILSSKPPFPSLKYSYSTFRWNETRPTTMFVTINRRHEYDFLYSDRECQVVRKKRVSPSREMHLKDILATFDSEDGAIVVDASRRDRKELKEPTLPEDLFDDLECESLHVSELKDENDENIGAQSQVIHDSLFKHRNRTESHSPEPLKMTNPREDYDFFSDFNVKPIRKTSANKSVKADDLKNVLNLFASEDGGYVPVLKKSVEISQEKEPTLPAILMGNSELHVSEMEENNDDSNIKLHREVKSDVNEDQESNIKIVRDLDSEVINSEQTVDRTESSEDKYSKSQHGDLNDIYFPSNLYHKKTFKTTAGSSENILLKGLLMNRKSTQPRHSISTSKNRSPTQNEIDMIVENFISVQRKFSLNTVRPVTHFLNVSNEESYEKYTFRKRKGKTKTTRIKTTKYSDKSTKRRGRPKKTTTPSGGIISSPSKNTRKHDKKYTTNSESIQTSVSNIRDSTSRNLKTKSVNIEDKSESASTATLKTIGKEDKDFISRPVKSSRVSTKIQLDHSVKKSQKQGLTKYESQPSSTSTSTDVLPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTVEPIPDSNLYNEWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL
ccccccccEEEHHHHHHHHEEEEEccccccccEEEEcccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccccEEEEccccccccccHHHHHHHHccccccEEEEEcccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccEEEcEEEEcccccccccEEEcccccccEEcccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHcccccccEEccccccccccccccccccccccHHHHHHHcccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccEEEEEEEcccccccccccccccHHHHccccHHHHHHHccccEEEEEcccccccccccccccccEEEEccccccccEEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccEEEEEEccHHHHHHHcccEEcccccccccccEEEEEEc
cccHHcccHEEEEEEHHHHHEEEEccccccccEEEEccccEEcccccccccEEEEEEEEcccccccEEEEEEcccccEcEEccccccEEEEEccccccHHHHHHHHHHcccccccEEEEEccHHHHHHHccccccHHHHccccccccEHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccEcccccccccHHHHHHHHHHHHcccccccEEEEEEEEEEccccccccEEEEccccEEEccccccccccccEEEEEcccccccccHcccEEEEcccccEEccccccccccccccccccccccccccccccccccEcccEEcccccHHHHHHHHHHHccccccccccEEccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccEEEEEEcccccccEEEEEEEEEccccccccccccccccccccEEEccccccccccccccccccccEcccccccccccccccccEEEEccccccccHHEHHHccccccccccccccccEEEEEEEEcccccccHcccccEEcccccccccccccccccHcccccHHHEEEEccccEEEEEEcccccccEccccccccccccHHHHHEEEEEccccccccccccccccEEEcccccccHHHHccccccHHHHHHcccEEEEEccEEEEcccccccccccccccccccccccccccEccccccccccHccccccccccEEEEEEEccccHHEEcccccccccEEEcccHHHHHHHccccEEEEEHcHccccccccccccHHHHHHHHHHccccEEEEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccHHHHcHHHcccccEEEEEccccEEEEEEcccccHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHEccHHHHcccccccHHHHHHHHHHHHccccccHHHcccccccEEHHHHHHHHccccEEccEEEEEcHHHHHHEEEEEEccccccccEccEEEEEcc
MDLFRLGNEVIVLVLDLLCVYCTlvsdnssvpcliqdngailsskppfpslkysystfrwnetrpttmFVTINrrheydflysdrecqvvrkkrvspsreMHLKDILAtfdsedgaivVDASrrdrkelkeptlpedlfddleceslhvselkdendenigaqsQVIHDSLfkhrnrteshspeplkmtnpredydffsdfnvkpirktsanksvkaddLKNVLNLFasedggyvpvLKKSVEisqekeptlpailmgnselhvsemeennddsnikLHREvksdvnedqesnikIVRDLDsevinseqtvdrtessedkysksqhgdlndiyfpsnlyhkktfkttagsseNILLKGLLmnrkstqprhsistsknrsptqnEIDMIVENFISVQRkfslntvrpvthflnvsneesyEKYTFRkrkgktkttrikttkysdkstkrrgrpkktttpsggiisspskntrkhdkkyttnsESIQTSVSnirdstsrnlktksvniedksesastATLKTIGkedkdfisrpvkssrvstkiqldHSVKksqkqgltkyesqpsstststdvlpahkmslaperkiaqfnNRNKLVLLHTKtthvktvpsenvqntkGKFELLKEIKfertgsedtsedveesgfftvepipdsnlyneweyrppkrkkasrknvfsfklneihvgtgkienrlgcdssnetsyaeveevpiidfndpfrilehkrrqdqypwnfkigswnvNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEircpleklpecpegyhafwfpgtrqgyagvavlsktkpvrvthgfsmkvggvvhthgfnrgsnehgsdmesgpshpelttiqyadasgiddgrvMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLkslneikpvvlagdlnvahnhidvalpltnlgksgftiqERNYFSNFLDLGFLDvhrhlypnhriytywpyydrpskmkgwrLDYFLISKQLKSHlsdleihgdvegsdhapqILYLNL
MDLFRLGNEVIVLVLDLLCVYCTLVSDNSSVPCLIQDNgailsskppfpSLKYSystfrwnetrptTMFVTINRRHEYdflysdrecqvvrkkrvspsremhlkdilatfdsedgaivvdasrrdrkelkeptlpedlfddlECESLHVSelkdendenigAQSQVIHDSLFkhrnrteshspeplkmtnpREDYDFFSDFNVKPirktsanksvkaddLKNVLNLfasedggyvPVLKKSVeisqekeptlpaILMGNSELHVSEMEENNDDSNIKLHRevksdvnedqesnikivrdldsevinseqtvdrtessedkysksqhgdlndiyfPSNLYHKKTFKTTAGSSENILLKGLLmnrkstqprhsistsknrsptqnEIDMIVENFISVQRKFSLntvrpvthflnvsneesyekytfrkrkgktkttrikttkysdkstkrrgrpkktttpsggiisspskntrkhdkkyttnsesiqtsvsnirdstsrnlktksvniedksesastatlktigkedkdfisrpvkssrvstkiqldhsvkksqkqgltkyesqpsstststdvLPAHKMSLAPERKIAQFNNRNKLVLLHTktthvktvpsenvqntkgkfelLKEIkfertgsedtsedveesgfftvepipdsnlyneweyrppkrkkasrknvfsfklneihvgtgkienrlgcdsSNETsyaeveevpiidfNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIhgdvegsdhapqilylnl
MDLFRLGNEVIVLVLDLLCVYCTLVSDNSSVPCLIQDNGAILSSKPPFPSLKYSYSTFRWNETRPTTMFVTINRRHEYDFLYSDRECQVVRKKRVSPSREMHLKDILATFDSEDGAIVVDASRRDRKELKEPTLPEDLFDDLECESLHVSELKDENDENIGAQSQVIHDSLFKHRNRTESHSPEPLKMTNPREDYDFFSDFNVKPIRKTSANKSVKADDLKNVLNLFASEDGGYVPVLKKSVEISQEKEPTLPAILMGNSELHVSEMEENNDDSNIKLHREVKSDVNEDQESNIKIVRDLDSEVINSEQTVDRTESSEDKYSKSQHGDLNDIYFPSNLYHKKTFKTTAGSSENILLKGLLMNRKSTQPRHSISTSKNRSPTQNEIDMIVENFISVQRKFSLNTVRPVTHFLNVSNEESYEkytfrkrkgktkttrikttkYSDkstkrrgrpkktttpsGGIISSPSKNTRKHDKKYTTNSESIQTSVSNIRDSTSRNLKTKSVNIEDKSESASTATLKTIGKEDKDFISRPVKSSRVSTKIQLDHSVKKSQKQGLTKYESQPSSTSTSTDVLPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTVEPIPDSNLYNEWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL
**LFRLGNEVIVLVLDLLCVYCTLVSDNSSVPCLIQDNGAILSSKPPFPSLKYSYSTFRWNETRPTTMFVTINRRHEYDFLYSDRECQVVRKK********HLKDILATFDSEDGAIV*****************************************************************************DFFSDFNV***************DLKNVLNLFASEDGGYVPVLK*****************************************************************************************LNDIYFPSNLYHKKTFKTTAG**ENILLKGLL************************IDMIVENFISVQRKFSLNTVRPVTHFLNVSNE**Y**Y*********************************************************************************************************************************************************************QFNNRNKLVLLHTKTTHVKT*************************************FFTVEPIPDSNLYNEWEY***********NVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGF*********************TIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHG****************
*DLFRLGNEVIVLVLDLLCVYCTLVSDNSSVPCLIQDNGAILSSKPPFPSLKYSYSTFRWNETRPTTMFVTINRRHEYDFLYSDRECQVV**********MHLKDILATFDSEDGAIVVDA***********TLPEDLFDDLECESLHVS**********GAQSQVIHDSLF******************PREDYDFFSDFNVKPIR**********DDLKNVLNLFASEDGGYVPVLKKSVE*****EPTLPAILMGNSEL*********************************************************************IYFPSNLYHKK*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL
MDLFRLGNEVIVLVLDLLCVYCTLVSDNSSVPCLIQDNGAILSSKPPFPSLKYSYSTFRWNETRPTTMFVTINRRHEYDFLYSDRECQV*********REMHLKDILATFDSEDGAIVVDASRRDRKELKEPTLPEDLFDDLECESLHVSELKDENDENIGAQSQVIHDSLFKHRNRTESHSPEPLKMTNPREDYDFFSDFNVKPIRKTSANKSVKADDLKNVLNLFASEDGGYVPVLKKSVEISQEKEPTLPAILMGNSELHVSEMEENNDDSNIKLHREVKSDVNEDQESNIKIVRDLDSEVINS******************HGDLNDIYFPSNLYHKKTFKTTAGSSENILLKGLLMNRK****************TQNEIDMIVENFISVQRKFSLNTVRPVTHFLNVSNEESYE******************************************ISSP********************************LKTKSVNIEDKSESASTATLKTIGKEDKDFIS*****************************************VLPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFE*************SGFFTVEPIPDSNLYNEWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRG*************HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL
*DLFRLGNEVIVLVLDLLCVYCTLVSDNSSVPCLIQDNGAILSSKPPFPSLKYSYSTFRWNETRPTTMFVTINRRHEYDFLYSDRECQVVRKKRVSPSREMHLKDILATFDSEDGAIVVDASRRDRKELKEPTLPEDLFDDLECESLHVSELKDENDENIGAQSQVIHDSLFKH**********PLKMTNPREDYDFFSDFNVKPIRKTSANKSVKADDLKNVLNLFASEDGGYVPVLKKSVEISQEKEPTLPAILMGNSELHVSE*EENNDDSNIKLHREVKSDVNEDQESNIKIVRDLDSEVIN********************GDLNDIYFPSNLYHKKTFKTTAGSSENILLKGLLMNR*************NRSPTQNEIDMIVENFISVQRKFSLNTVRPVTHFLNVSNEESYEKYTFRKRKGKTKTTRIKTTKYSD****************************************************SRNLKTK***I*******STATLK*I*KEDKDFISRPVKSSRVSTKIQLDHSVKKS***************************SLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERT********VEESGFFTVEPIPDSNLYNEWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIEN*LGCDSS********EEVPIID*NDPFRILE*KRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHT********************PELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDLFRLGNEVIVLVLDLLCVYCTLVSDNSSVPCLIQDNGAILSSKPPFPSLKYSYSTFRWNETRPTTMFVTINRRHEYDFLYSDRECQVVRKKRVSPSREMHLKDILATFDSEDGAIVVDASRRDRKELKEPTLPEDLFDDLECESLHVSELKDENDENIGAQSQVIHDSLFKHRNRTESHSPEPLKMTNPREDYDFFSDFNVKPIRKTSANKSVKADDLKNVLNLFASEDGGYVPVLKKSVEISQEKEPTLPAILMGNSELHVSEMEENNDDSNIKLHREVKSDVNEDQESNIKIVRDLDSEVINSEQTVDRTESSEDKYSKSQHGDLNDIYFPSNLYHKKTFKTTAGSSENILLKGLLMNRKSTQPRHSISTSKNRSPTQNEIDMIVENFISVQRKFSLNTVRPVTHFLNVSNEESYEKYTFRKRKGKTKTTRIKTTKYSDKSTKRRGRPKKTTTPSGGIISSPSKNTRKHDKKYTTNSESIQTSVSNIRDSTSRNLKTKSVNIEDKSESASTATLKTIGKEDKDFISRPVKSSRVSTKIQLDHSVKKSQKQGLTKYESQPSSTSTSTDVLPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTVEPIPDSNLYNEWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1033 2.2.26 [Sep-21-2011]
P27864679 Recombination repair prot yes N/A 0.239 0.363 0.352 4e-52
P37454252 Exodeoxyribonuclease OS=B yes N/A 0.242 0.992 0.328 3e-46
A0MTA1310 DNA-(apurinic or apyrimid yes N/A 0.258 0.861 0.359 4e-46
P45951536 Apurinic endonuclease-red yes N/A 0.262 0.505 0.332 2e-44
A2T7I6318 DNA-(apurinic or apyrimid N/A N/A 0.243 0.792 0.361 5e-43
P23196318 DNA-(apurinic or apyrimid yes N/A 0.241 0.783 0.364 6e-43
A2T6Y4318 DNA-(apurinic or apyrimid yes N/A 0.243 0.792 0.361 8e-43
A1YFZ3318 DNA-(apurinic or apyrimid N/A N/A 0.243 0.792 0.361 8e-43
P27695318 DNA-(apurinic or apyrimid yes N/A 0.243 0.792 0.361 8e-43
P43138317 DNA-(apurinic or apyrimid yes N/A 0.241 0.785 0.364 3e-42
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1 PE=1 SV=2 Back     alignment and function desciption
 Score =  207 bits (527), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 160/309 (51%), Gaps = 62/309 (20%)

Query: 733  WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
            +N KI SWNV G+RAW             +KDG   +   + ++FC+QE +C  ++LPE 
Sbjct: 425  FNLKICSWNVAGLRAW------------LKKDGLQLIDLEEPDIFCLQETKCANDQLPEE 472

Query: 792  ---CPEGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
                P GYH +W   PG   GYAGVA+ SK  P+ V +G                  NE 
Sbjct: 473  VTRLP-GYHPYWLCMPG---GYAGVAIYSKIMPIHVEYGIG----------------NEE 512

Query: 847  GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
              D+                      GR++T EYE+FYL+NVY P +   L  L  ++ W
Sbjct: 513  FDDV----------------------GRMITAEYEKFYLINVYVPNSGRKLVNLEPRMRW 550

Query: 907  NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
                + ++K L+ +KPVV+ GD+NV+H  ID+  P  N   +GFT +ER+  +  L LGF
Sbjct: 551  EKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGF 610

Query: 967  LDVHRHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
            +D  RHLYP+ +  YT+W Y  +  ++  GWRLDY L+S++    + + EI     GSDH
Sbjct: 611  VDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH 670

Query: 1025 APQILYLNL 1033
             P  ++ N+
Sbjct: 671  CPITIFFNI 679
Could promote homologous recombination at sites of DNA damage. Has apurinic endonuclease and double-stranded DNA 3'-exonuclease activities and carries out single-stranded DNA renaturation in a Mg(2+)-dependent manner. Activity is more efficient in purine-rich regions of dsDNA than in pyrimidine-rich regions.
Drosophila melanogaster (taxid: 7227)
EC: 4EC: .EC: 2EC: .EC: 9EC: 9EC: .EC: 1EC: 8
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1 SV=1 Back     alignment and function description
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1 PE=1 SV=1 Back     alignment and function description
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP PE=2 SV=2 Back     alignment and function description
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus GN=APEX1 PE=3 SV=1 Back     alignment and function description
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1 PE=1 SV=2 Back     alignment and function description
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes GN=APEX1 PE=3 SV=1 Back     alignment and function description
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1 PE=3 SV=1 Back     alignment and function description
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2 Back     alignment and function description
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus GN=Apex1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1033
346473687350 hypothetical protein [Amblyomma maculatu 0.246 0.728 0.396 7e-57
357614743630 ap endonuclease [Danaus plexippus] 0.255 0.419 0.365 1e-56
189238676 1246 PREDICTED: similar to ap endonuclease [T 0.241 0.199 0.362 2e-54
443711514307 hypothetical protein CAPTEDRAFT_159745 [ 0.264 0.889 0.371 3e-53
340719564357 PREDICTED: LOW QUALITY PROTEIN: recombin 0.242 0.703 0.373 4e-53
350410618334 PREDICTED: recombination repair protein 0.242 0.751 0.373 4e-53
332024107356 Recombination repair protein 1 [Acromyrm 0.250 0.727 0.361 2e-52
242004144332 Recombination repair protein, putative [ 0.281 0.876 0.357 3e-52
328782712346 PREDICTED: recombination repair protein 0.242 0.725 0.363 4e-52
158298437606 AGAP009587-PA [Anopheles gambiae str. PE 0.244 0.417 0.364 4e-52
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 175/310 (56%), Gaps = 55/310 (17%)

Query: 729  DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK 788
            D+ PWN K+ SWNVNG+RAW              K+G  ++++   ++F IQE +C   K
Sbjct: 91   DKKPWNLKLCSWNVNGVRAW------------LGKEGLEYLKKEQPDIFAIQETKCSDSK 138

Query: 789  LP---ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNE 845
            LP   +  EGYH+++  G ++GY+GVA+L+K KP+ V +G  M+                
Sbjct: 139  LPPEMKSVEGYHSYFLAGDQEGYSGVALLAKIKPLDVKYGIGME---------------- 182

Query: 846  HGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL 905
                      H +             +GRV+T E+++FYLV VY P A + L  L  ++ 
Sbjct: 183  ---------KHDK-------------EGRVITAEFDKFYLVAVYVPNAGKKLVRLDYRME 220

Query: 906  WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLG 965
            W+   R +LK L   K VVL GD+NVAH  ID+A P TN   +GFT +ER+ F+  L+ G
Sbjct: 221  WDKDFRAYLKELEAKKHVVLCGDMNVAHQEIDLANPKTNKKNAGFTQEERDGFTALLESG 280

Query: 966  FLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
            F+D  RHLYP+ +  YT+W Y  +  +K  GWRLDYF++SK L S++SD  IH  V GSD
Sbjct: 281  FVDSFRHLYPDKKGAYTFWTYMMNARAKNVGWRLDYFILSKALASNISDSLIHSQVMGSD 340

Query: 1024 HAPQILYLNL 1033
            H P IL LN+
Sbjct: 341  HCPVILLLNI 350

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus] Back     alignment and taxonomy information
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum] Back     alignment and taxonomy information
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta] Back     alignment and taxonomy information
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis] gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST] gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1033
ZFIN|ZDB-GENE-040426-2761310 apex1 "APEX nuclease (multifun 0.154 0.516 0.438 5.7e-46
TIGR_CMR|BA_3868252 BA_3868 "exodeoxyribonuclease 0.155 0.638 0.411 1.2e-44
DICTYBASE|DDB_G0277701361 apeA "DNA-(apurinic or apyrimi 0.174 0.498 0.419 1.8e-42
MGI|MGI:88042317 Apex1 "apurinic/apyrimidinic e 0.156 0.511 0.460 4.5e-42
RGD|2126317 Apex1 "APEX nuclease (multifun 0.156 0.511 0.460 4.5e-42
UNIPROTKB|A2T7I6318 APEX1 "DNA-(apurinic or apyrim 0.156 0.509 0.454 5.8e-42
FB|FBgn0004584679 Rrp1 "Recombination repair pro 0.157 0.240 0.406 6.6e-42
TAIR|locus:2060540536 ARP "apurinic endonuclease-red 0.167 0.322 0.443 8.7e-42
UNIPROTKB|P27695318 APEX1 "DNA-(apurinic or apyrim 0.156 0.509 0.454 9.5e-42
UNIPROTKB|A1YFZ3318 APEX1 "DNA-(apurinic or apyrim 0.156 0.509 0.454 9.5e-42
ZFIN|ZDB-GENE-040426-2761 apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 337 (123.7 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
 Identities = 71/162 (43%), Positives = 92/162 (56%)

Query:   872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
             +GRV+T E+  F+LV  Y P A   L  L  +  W+   R +L  L+  KP+VL GDLNV
Sbjct:   147 EGRVITAEFPDFFLVTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNV 206

Query:   932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRI-YTYWPYY-DRP 989
             AH  ID+  P  N   +GFT +ER  F+  L+ GF D  R LYP+    YT+W Y  +  
Sbjct:   207 AHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMNAR 266

Query:   990 SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
             SK  GWRLDYF++S  L   L D +I     GSDH P  L+L
Sbjct:   267 SKNVGWRLDYFVLSSALLPGLCDSKIRNTAMGSDHCPITLFL 308
GO:0003677 "DNA binding" evidence=IEA
GO:0004519 "endonuclease activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0004518 "nuclease activity" evidence=IEA
GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA
GO:0043066 "negative regulation of apoptotic process" evidence=IMP
GO:0001947 "heart looping" evidence=IMP
GO:0060047 "heart contraction" evidence=IMP
GO:0010628 "positive regulation of gene expression" evidence=IMP
GO:0080111 "DNA demethylation" evidence=ISS
GO:0016829 "lyase activity" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0006974 "response to DNA damage stimulus" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IDA
GO:0005730 "nucleolus" evidence=IEA
GO:0016607 "nuclear speck" evidence=IEA
TIGR_CMR|BA_3868 BA_3868 "exodeoxyribonuclease III" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277701 apeA "DNA-(apurinic or apyrimidinic site) lyase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:88042 Apex1 "apurinic/apyrimidinic endonuclease 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2126 Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A2T7I6 APEX1 "DNA-(apurinic or apyrimidinic site) lyase" [Pongo pygmaeus (taxid:9600)] Back     alignment and assigned GO terms
FB|FBgn0004584 Rrp1 "Recombination repair protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2060540 ARP "apurinic endonuclease-redox protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P27695 APEX1 "DNA-(apurinic or apyrimidinic site) lyase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A1YFZ3 APEX1 "DNA-(apurinic or apyrimidinic site) lyase" [Pan paniscus (taxid:9597)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.990.691
4th Layer4.2.99.180.737

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1033
cd09087253 cd09087, Ape1-like_AP-endo, Human Ape1-like subfam 2e-86
TIGR00633255 TIGR00633, xth, exodeoxyribonuclease III (xth) 6e-68
cd09073251 cd09073, ExoIII_AP-endo, Escherichia coli exonucle 9e-65
COG0708261 COG0708, XthA, Exonuclease III [DNA replication, r 2e-61
cd09085252 cd09085, Mth212-like_AP-endo, Methanothermobacter 1e-56
PRK13911250 PRK13911, PRK13911, exodeoxyribonuclease III; Prov 1e-53
TIGR00195254 TIGR00195, exoDNase_III, exodeoxyribonuclease III 2e-53
cd10281253 cd10281, Nape_like_AP-endo, Neisseria meningitides 3e-51
cd09086254 cd09086, ExoIII-like_AP-endo, Escherichia coli exo 3e-46
cd09088309 cd09088, Ape2-like_AP-endo, Human Ape2-like subfam 2e-32
cd08372241 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase 2e-19
cd09076236 cd09076, L1-EN, Endonuclease domain (L1-EN) of the 3e-15
PRK11756268 PRK11756, PRK11756, exonuclease III; Provisional 3e-14
>gnl|CDD|197321 cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information 
 Score =  278 bits (713), Expect = 2e-86
 Identities = 113/304 (37%), Positives = 155/304 (50%), Gaps = 58/304 (19%)

Query: 735  FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--- 791
             KI SWNVNG+RA  +            K    ++++ D ++ C+QE +     +P+   
Sbjct: 1    LKIISWNVNGLRALLK------------KGLLDYVKKEDPDILCLQETKLQEGDVPKELK 48

Query: 792  -CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
               +GYH +W    ++GY+G A+LSK KP+ VT+G                G  EH    
Sbjct: 49   ELLKGYHQYWNAAEKKGYSGTAILSKKKPLSVTYGI---------------GIEEH---- 89

Query: 851  ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
                   E              GRV+T E+E FYLVN Y P +   L  L  +  W+   
Sbjct: 90   -----DQE--------------GRVITAEFENFYLVNTYVPNSGRGLERLDRRKEWDVDF 130

Query: 911  RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
            R +LK L+  KPV+  GDLNVAH  ID+A P TN   +GFT +ER  F+  L+ GF+D  
Sbjct: 131  RAYLKKLDSKKPVIWCGDLNVAHEEIDLANPKTNKKSAGFTPEERESFTELLEAGFVDTF 190

Query: 971  RHLYPNHRI-YTYWPY--YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQ 1027
            RHL+P+    YT+W Y    R  K  GWRLDYFL+S++LK  + D  I  D+ GSDH P 
Sbjct: 191  RHLHPDKEGAYTFWSYRGNARA-KNVGWRLDYFLVSERLKDRVVDSFIRSDIMGSDHCPI 249

Query: 1028 ILYL 1031
             L L
Sbjct: 250  GLEL 253

This subfamily includes human Ape1 (also known as Apex, Hap1, or Ref-1) and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Ape1 and Ape2 in humans. Ape1 is found in this subfamily, it exhibits strong AP-endonuclease activity but shows weak 3'-5' exonuclease and 3'-phosphodiesterase activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily. Length = 253
>gnl|CDD|233064 TIGR00633, xth, exodeoxyribonuclease III (xth) Back     alignment and domain information
>gnl|CDD|197307 cd09073, ExoIII_AP-endo, Escherichia coli exonuclease III (ExoIII)-like apurinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|223780 COG0708, XthA, Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|197319 cd09085, Mth212-like_AP-endo, Methanothermobacter thermautotrophicus Mth212-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|139971 PRK13911, PRK13911, exodeoxyribonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|188032 TIGR00195, exoDNase_III, exodeoxyribonuclease III Back     alignment and domain information
>gnl|CDD|197336 cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|197320 cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|197322 cd09088, Ape2-like_AP-endo, Human Ape2-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|197306 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily Back     alignment and domain information
>gnl|CDD|197310 cd09076, L1-EN, Endonuclease domain (L1-EN) of the non-LTR retrotransposon LINE-1 (L1), and related domains Back     alignment and domain information
>gnl|CDD|236970 PRK11756, PRK11756, exonuclease III; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1033
COG0708261 XthA Exonuclease III [DNA replication, recombinati 100.0
PRK13911250 exodeoxyribonuclease III; Provisional 100.0
PRK11756268 exonuclease III; Provisional 100.0
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 100.0
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 100.0
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 99.94
PRK05421263 hypothetical protein; Provisional 99.81
KOG1294|consensus335 99.8
KOG1921|consensus286 99.79
PRK10702211 endonuclease III; Provisional 99.71
COG3568259 ElsH Metal-dependent hydrolase [General function p 99.68
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 99.64
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 99.64
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 99.63
PTZ00297 1452 pantothenate kinase; Provisional 99.63
PRK15251271 cytolethal distending toxin subunit CdtB; Provisio 99.55
KOG3873|consensus 422 99.51
PRK13910289 DNA glycosylase MutY; Provisional 99.51
PRK10880350 adenine DNA glycosylase; Provisional 99.39
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 99.34
TIGR01083191 nth endonuclease III. This equivalog model identif 99.33
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 99.33
KOG2756|consensus349 99.28
COG3021309 Uncharacterized protein conserved in bacteria [Fun 99.16
KOG2338|consensus495 99.12
smart00476276 DNaseIc deoxyribonuclease I. Deoxyribonuclease I c 99.11
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.08
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.04
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 98.61
KOG0620|consensus361 98.53
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 98.43
smart00478149 ENDO3c endonuclease III. includes endonuclease III 98.33
COG1194342 MutY A/G-specific DNA glycosylase [DNA replication 98.27
COG2231215 Uncharacterized protein related to Endonuclease II 98.21
cd00056158 ENDO3c endonuclease III; includes endonuclease III 98.18
COG2374798 Predicted extracellular nuclease [General function 98.11
TIGR03252177 uncharacterized HhH-GPD family protein. This model 98.05
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 96.78
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 96.71
KOG0566|consensus 1080 96.49
KOG2457|consensus555 96.44
KOG1294|consensus 335 93.03
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 92.47
COG5411 460 Phosphatidylinositol 5-phosphate phosphatase [Sign 90.94
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 90.73
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 86.59
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-47  Score=407.44  Aligned_cols=248  Identities=41%  Similarity=0.750  Sum_probs=221.2

Q ss_pred             EEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCCceEeecCCCCCceEE
Q psy12564        735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGYHAFWFPGTRQGYAGV  811 (1033)
Q Consensus       735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY~syfs~s~kkGysGV  811 (1033)
                      |||+||||||+|++.             +.+.++|.+++|||||||||+....+++..   ..||+.++..+ .+||+||
T Consensus         1 mkI~SwNVNgiRar~-------------~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~g-qKgysGV   66 (261)
T COG0708           1 MKIASWNVNGLRARL-------------KKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHG-QKGYSGV   66 (261)
T ss_pred             CeeEEEehhhHHHHH-------------HHHHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEecC-cCCcceE
Confidence            699999999999886             459999999999999999999998888764   67996666554 4999999


Q ss_pred             EEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEEcC
Q psy12564        812 AVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP  891 (1033)
Q Consensus       812 AILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVYlP  891 (1033)
                      ||+||.++..+..|+++              ....  |                     .+||+|.+++..+.|+|+|+|
T Consensus        67 ailsr~~~~~v~~g~~~--------------~~~~--d---------------------~e~R~I~a~~~~~~v~~~Y~P  109 (261)
T COG0708          67 AILSKKPPDDVRRGFPG--------------EEED--D---------------------EEGRVIEAEFDGFRVINLYFP  109 (261)
T ss_pred             EEEEccCchhhhcCCCC--------------Cccc--c---------------------ccCcEEEEEECCEEEEEEEcC
Confidence            99999998877766641              0111  2                     689999999999999999999


Q ss_pred             CCcc-hhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCcccccccc---ccCCCCCCChHHHHHHHHHHhcCC
Q psy12564        892 AAKE-DLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPL---TNLGKSGFTIQERNYFSNFLDLGF  966 (1033)
Q Consensus       892 ng~s-d~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk---~n~g~sGft~eERa~L~eLLsaGL  966 (1033)
                      ++.. +.+++.+|++|++.|..++.++ ..+.|+|+|||||.+|.++|.++++   .+.+.++|+++||++|..|++.||
T Consensus       110 nG~~~~~~k~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~  189 (261)
T COG0708         110 NGSSIGLEKFDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGF  189 (261)
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHHHHcch
Confidence            9998 7888999999999999999987 5569999999999999999999996   558899999999999999999999


Q ss_pred             eehhcccCCCCCccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCC----CCccceEEEEEC
Q psy12564        967 LDVHRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG----SDHAPQILYLNL 1033 (1033)
Q Consensus       967 vDA~R~~~Pd~g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~g----SDH~PViLdLdL 1033 (1033)
                      +|+||.++|+++.||||+++.+ +..+.|+||||+++|+.+...+.++.|..++++    ||||||.++|++
T Consensus       190 ~D~~R~~~p~~~~YTwW~YR~~~~~~n~G~RID~~l~S~~L~~~~~~a~I~~~~rg~e~pSDHaPV~~e~~~  261 (261)
T COG0708         190 VDTFRLFHPEPEKYTWWDYRANAARRNRGWRIDYILVSPALADRLKDAGIDREVRGWEKPSDHAPVWVELDL  261 (261)
T ss_pred             hhhhHhhCCCCCcccccccccchhhhcCceeEEEEEeCHHHHHHHHhcCccHHHhcCCCCCCcCcEEEEecC
Confidence            9999999999878999999998 777799999999999999999999999988776    999999999975

>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>PRK11756 exonuclease III; Provisional Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>KOG1294|consensus Back     alignment and domain information
>KOG1921|consensus Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional Back     alignment and domain information
>KOG3873|consensus Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>KOG2756|consensus Back     alignment and domain information
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2338|consensus Back     alignment and domain information
>smart00476 DNaseIc deoxyribonuclease I Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>KOG0620|consensus Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>COG2374 Predicted extracellular nuclease [General function prediction only] Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>KOG0566|consensus Back     alignment and domain information
>KOG2457|consensus Back     alignment and domain information
>KOG1294|consensus Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1033
2o3c_A282 Crystal Structure Of Zebrafish Ape Length = 282 2e-48
1de8_B276 Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bo 1e-44
1dew_A279 Crystal Structure Of Human Ape1 Bound To Abasic Dna 1e-44
2o3h_A285 Crystal Structure Of The Human C65a Ape Length = 28 2e-44
1bix_A287 The Crystal Structure Of The Human Dna Repair Endon 2e-44
1e9n_A318 A Second Divalent Metal Ion In The Active Site Of A 4e-44
2isi_A317 Crystal Structure Of Ape1 From Homo Sapiens In A Ne 5e-44
3fzi_A265 1.9 Angstrom Structure Of The Thermophilic Exonucle 8e-33
3g00_A265 Mth0212 In Complex With A 9bp Blunt End Dsdna At 1. 3e-32
3g91_A265 1.2 Angstrom Structure Of The Exonuclease Iii Homol 4e-32
2jc5_A259 Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From 7e-22
4b5h_A259 Substate Bound Inactive Mutant Of Neisseria Ap Endo 3e-21
2voa_A257 Structure Of An Ap Endonuclease From Archaeoglobus 1e-13
2j63_A467 Crystal Structure Of Ap Endonuclease Lmap From Leis 7e-12
2jc4_A256 3'-5' Exonuclease (Nexo) From Neisseria Meningitidi 6e-11
1ako_A268 Exonuclease Iii From Escherichia Coli Length = 268 4e-08
4f1r_A293 Structure Analysis Of The Global Metabolic Regulato 4e-07
>pdb|2O3C|A Chain A, Crystal Structure Of Zebrafish Ape Length = 282 Back     alignment and structure 
Iteration: 1

 Score =  191 bits (484), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 119/330 (36%), Positives = 162/330 (49%), Gaps = 61/330 (18%)
Query: 709  EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
            E PI+ + DP   L  K   D    N KI SWNV+G+RAW +            K+G  +
Sbjct: 5    EAPIL-YEDPPEKLTSK---DGRAANMKITSWNVDGLRAWVK------------KNGLDW 48
Query: 769  MRQHDLNVFCIQEIRCPLEKLPE----CPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVT 823
            +R+ D ++ C+QE +C  + LP      PE  H +W     ++GY+GVA+L KT+P+ VT
Sbjct: 49   VRKEDPDILCLQETKCAEKALPADITAMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVT 108
Query: 824  HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
            +G                G  EH  +                       GRV+T E+  F
Sbjct: 109  YGI---------------GKEEHDKE-----------------------GRVITAEFPDF 130
Query: 884  YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
            +LV  Y P A   L  L  +  W+   R +L  L+  KP+VL GDLNVAH  ID+  P  
Sbjct: 131  FLVTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKG 190
Query: 944  NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFL 1001
            N   +GFT +ER  F+  L+ GF D  R LYP+    YT+W Y  +  SK  GWRLDYF+
Sbjct: 191  NRKNAGFTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMNARSKNVGWRLDYFV 250
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
            +S  L   L D +I     GSDH P  L+L
Sbjct: 251  LSSALLPGLCDSKIRNTAMGSDHCPITLFL 280
>pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To Abasic Dna Length = 276 Back     alignment and structure
>pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna Length = 279 Back     alignment and structure
>pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape Length = 285 Back     alignment and structure
>pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease Hap1 Suggests The Recognition Of Extra-Helical Deoxyribose At Dna Abasic Sites Length = 287 Back     alignment and structure
>pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE, Ape1, And Its Implications For The Catalytic Mechanism Length = 318 Back     alignment and structure
>pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New Crystal Form Complexed With A Ligand Length = 317 Back     alignment and structure
>pdb|3FZI|A Chain A, 1.9 Angstrom Structure Of The Thermophilic Exonuclease Iii Homologue Mth0212 Length = 265 Back     alignment and structure
>pdb|3G00|A Chain A, Mth0212 In Complex With A 9bp Blunt End Dsdna At 1.7 Angstrom Length = 265 Back     alignment and structure
>pdb|3G91|A Chain A, 1.2 Angstrom Structure Of The Exonuclease Iii Homologue Mth0212 Length = 265 Back     alignment and structure
>pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From Neisseria Meningitidis Length = 259 Back     alignment and structure
>pdb|4B5H|A Chain A, Substate Bound Inactive Mutant Of Neisseria Ap Endonuclease In Presence Of Metal Ions Length = 259 Back     alignment and structure
>pdb|2VOA|A Chain A, Structure Of An Ap Endonuclease From Archaeoglobus Fulgidus Length = 257 Back     alignment and structure
>pdb|2J63|A Chain A, Crystal Structure Of Ap Endonuclease Lmap From Leishmania Major Length = 467 Back     alignment and structure
>pdb|2JC4|A Chain A, 3'-5' Exonuclease (Nexo) From Neisseria Meningitidis Length = 256 Back     alignment and structure
>pdb|1AKO|A Chain A, Exonuclease Iii From Escherichia Coli Length = 268 Back     alignment and structure
>pdb|4F1R|A Chain A, Structure Analysis Of The Global Metabolic Regulator Crc From Pseudomonas Aeruginos Length = 293 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1033
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 4e-89
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 3e-86
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 4e-83
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 3e-82
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 2e-64
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 3e-60
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 1e-44
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 2e-43
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 2e-40
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 2e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 5e-08
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 6e-05
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 5e-04
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Length = 265 Back     alignment and structure
 Score =  285 bits (732), Expect = 4e-89
 Identities = 89/304 (29%), Positives = 131/304 (43%), Gaps = 55/304 (18%)

Query: 735  FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--- 791
             KI SWNVNG+RA              +K    +  +   ++ C+QEI+   E+LP    
Sbjct: 4    LKIISWNVNGLRAV------------HRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLR 51

Query: 792  CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
              EGY +F+ P  R+GY+GVA+ +K  P  +  GF               G      D E
Sbjct: 52   HVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREGF---------------GVERF--DTE 94

Query: 852  SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
                                 GR+   +++ F L N+Y P        L  KL +     
Sbjct: 95   ---------------------GRIQIADFDDFLLYNIYFPNGAMSEERLKYKLEFYDAFL 133

Query: 912  GHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
              +    +  + V++ GD N AH  ID+A P  N   SGF   ER +   F++ G++D  
Sbjct: 134  EDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTF 193

Query: 971  RHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
            R    +   YT+W Y  R   +  GWRLDYF ++++ K  +    I  DV GSDH P  L
Sbjct: 194  RMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGL 253

Query: 1030 YLNL 1033
             + L
Sbjct: 254  EIEL 257
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Length = 259 Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Length = 285 Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Length = 318 Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467 Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Length = 238 Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Length = 257 Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Length = 268 Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Length = 256 Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Length = 245 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266 Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267 Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Length = 240 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1033
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 100.0
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 100.0
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 100.0
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 100.0
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 100.0
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 100.0
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 100.0
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 100.0
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 100.0
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 99.96
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 99.95
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.94
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.94
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 99.94
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 99.92
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 99.92
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 99.91
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 99.91
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 99.88
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 99.88
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 99.85
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 99.8
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 99.7
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 99.6
2f1n_A262 CDT B, cytolethal distending toxin subunit B; E.co 99.59
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 99.59
1sr4_B261 CDT B, cytolethal distending toxin protein B; bact 99.58
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 99.56
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 99.53
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 99.52
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 99.47
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 99.46
3fsp_A369 A/G-specific adenine glycosylase; protein-DNA comp 99.41
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 99.28
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 99.16
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.11
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 98.97
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 98.9
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 98.69
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 98.57
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 98.51
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 98.12
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 97.94
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 97.87
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 97.59
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 97.54
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 96.82
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 96.77
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 96.12
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 95.78
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 95.18
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
Probab=100.00  E-value=5.2e-41  Score=341.62  Aligned_cols=250  Identities=34%  Similarity=0.655  Sum_probs=213.1

Q ss_pred             CeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCCceEeecCCCCCce
Q psy12564        733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGYHAFWFPGTRQGYA  809 (1033)
Q Consensus       733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY~syfs~s~kkGys  809 (1033)
                      ..|||+||||+|++...            .+.+.++|++.+|||||||||+.....+...   ..||..++.....++++
T Consensus         2 ~~l~i~s~Nv~g~~~~~------------~~~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~   69 (265)
T 3g91_A            2 AVLKIISWNVNGLRAVH------------RKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYS   69 (265)
T ss_dssp             CEEEEEEEECSCHHHHH------------HHTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECBSSTTSC
T ss_pred             CccEEEEEEcCCchhhh------------hhhHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccCCCCCcC
Confidence            46999999999997654            2359999999999999999998765444432   47999888776677889


Q ss_pred             EEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEE
Q psy12564        810 GVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVY  889 (1033)
Q Consensus       810 GVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVY  889 (1033)
                      |||||+|.++..+..++.               ....  |                     .+||++.+++..+.|+|+|
T Consensus        70 Gvail~k~~~~~~~~~~~---------------~~~~--d---------------------~~gr~i~~~~~~~~i~~vy  111 (265)
T 3g91_A           70 GVAMYTKVPPSSLREGFG---------------VERF--D---------------------TEGRIQIADFDDFLLYNIY  111 (265)
T ss_dssp             CEEEEESSCCSEEECCCS---------------CHHH--H---------------------SBSCEEEEECSSCEEEEEE
T ss_pred             EEEEEEecChHHhccCCC---------------Cccc--C---------------------CcCCEEEEEeCCEEEEEEE
Confidence            999999999877654432               0001  1                     5899999999999999999


Q ss_pred             cCCCcchhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcCCee
Q psy12564        890 APAAKEDLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD  968 (1033)
Q Consensus       890 lPng~sd~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaGLvD  968 (1033)
                      +|++....+++.+|.+|++.|.+++.++ ..+.|+|||||||+++.++|..++..+.+..|+.+.++++|..+++.||.|
T Consensus       112 ~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D  191 (265)
T 3g91_A          112 FPNGAMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVD  191 (265)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHHHHHHHHHHHTTEEE
T ss_pred             ecCCCCCchhHHHHHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhcCCCCccCHHHHHHHHHHHhcCcEE
Confidence            9999887778889999999999999887 347899999999999999999888877788999999999999999999999


Q ss_pred             hhcccCCCCCccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEE
Q psy12564        969 VHRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032 (1033)
Q Consensus       969 A~R~~~Pd~g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLd 1032 (1033)
                      +||.++|..+.||||+++.+ +..+.++||||||+++.+...+.++.|.....+|||+||++++.
T Consensus       192 ~~r~~~p~~~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~  256 (265)
T 3g91_A          192 TFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIE  256 (265)
T ss_dssp             THHHHCCCSCCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEE
T ss_pred             eeHhhCCCCCCCCCcCCCCCccccCceEEEEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhh
Confidence            99999998889999998876 66778999999999999988899999998777899999999985
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1033
d1hd7a_275 d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human 2e-28
d1akoa_268 d.151.1.1 (A:) DNA-repair enzyme exonuclease III { 4e-28
d1vyba_236 d.151.1.1 (A:) Endonuclease domain of LINE-1 rever 9e-21
d2f1na1250 d.151.1.1 (A:1-250) Cytolethal distending toxin su 3e-20
d2imqx1280 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug ( 2e-19
d1wdua_228 d.151.1.1 (A:) Endonuclease domain of TRAS1 retrot 6e-17
d1sr4b_261 d.151.1.1 (B:) Cytolethal distending toxin subunit 2e-12
d1i9za_345 d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission 3e-09
d2ddra1299 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras 2e-07
d2a40b1260 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos 2e-07
d1zwxa1293 d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera 6e-07
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA repair endonuclease Hap1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-28
 Identities = 108/327 (33%), Positives = 146/327 (44%), Gaps = 61/327 (18%)

Query: 715  FNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDL 774
            + DP    + K      P   KI SWNV+G+RAW             +K G  ++++   
Sbjct: 2    YEDPP---DQKTSPSGKPATLKICSWNVDGLRAW------------IKKKGLDWVKEEAP 46

Query: 775  NVFCIQEIRCPLEKLPE-----CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMK 829
            ++ C+QE +C   KLP          +  +  P  ++GY+GV +LS+  P++V++G   +
Sbjct: 47   DILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDE 106

Query: 830  VGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVY 889
                                                      +GRV+  E++ F LV  Y
Sbjct: 107  --------------------------------------EHDQEGRVIVAEFDSFVLVTAY 128

Query: 890  APAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSG 949
             P A   L  L  +  W+   R  LK L   KP+VL GDLNVAH  ID+  P  N   +G
Sbjct: 129  VPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 188

Query: 950  FTIQERNYFSNFL-DLGFLDVHRHLYPNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQL 1006
            FT QER  F   L  +   D  RHLYPN    YT+W Y     SK  GWRLDYFL+S  L
Sbjct: 189  FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSL 248

Query: 1007 KSHLSDLEIHGDVEGSDHAPQILYLNL 1033
               L D +I     GSDH P  LYL L
Sbjct: 249  LPALCDSKIRSKALGSDHCPITLYLAL 275
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Length = 268 Back     information, alignment and structure
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Length = 280 Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Length = 228 Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261 Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 345 Back     information, alignment and structure
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299 Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Length = 260 Back     information, alignment and structure
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1033
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 99.98
d1vyba_236 Endonuclease domain of LINE-1 reverse transcriptas 99.97
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 99.94
d1akoa_268 DNA-repair enzyme exonuclease III {Escherichia col 99.93
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 99.85
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 99.84
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 99.84
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 99.83
d1sr4b_261 Cytolethal distending toxin subunit B {Haemophilus 99.82
d2a40b1260 Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 99.77
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 99.68
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 99.68
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 99.66
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 99.62
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 99.61
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 99.44
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 99.23
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 97.63
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 97.21
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 91.59
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA repair endonuclease Hap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.1e-32  Score=266.18  Aligned_cols=266  Identities=42%  Similarity=0.798  Sum_probs=172.0

Q ss_pred             CCCchhhhhhcccCCCCCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC--
Q psy12564        715 FNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC--  792 (1033)
Q Consensus       715 f~~p~~~l~~~~~~e~~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e--  792 (1033)
                      |++|+.   +++.+.+.+.+|||+||||+|++...            ++.+.++|++++|||||||||+.....+...  
T Consensus         2 ~~~p~~---~~~~~~~~~~~mki~S~NvnGlr~~~------------~~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~~~   66 (275)
T d1hd7a_           2 YEDPPD---QKTSPSGKPATLKICSWNVDGLRAWI------------KKKGLDWVKEEAPDILCLQETKCSENKLPAELQ   66 (275)
T ss_dssp             CCCCCC---CCBCTTSCBCCEEEEEEECSSHHHHH------------HTTHHHHHHHHCCSEEEEECCCCCC--------
T ss_pred             CCCCcc---ccCCCCCCCCcEEEEEEEeccHHhhh------------hccHHHHHHhCCCCEEEEEccccChhhCCHHHH
Confidence            455665   35566667788999999999987543            3457899999999999999997655444332  


Q ss_pred             -CCCCce-Eeec-CCCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCC
Q psy12564        793 -PEGYHA-FWFP-GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASG  869 (1033)
Q Consensus       793 -l~GY~s-yfs~-s~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~  869 (1033)
                       ..||.. .+.. ....+..|++++++..+..+.....               ....  +                    
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~~--~--------------------  109 (275)
T d1hd7a_          67 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIG---------------DEEH--D--------------------  109 (275)
T ss_dssp             ---CCCEEEEECC-----CCCEEEEESSCCSEEEESCS---------------CGGG--S--------------------
T ss_pred             hccCcceeeeeeecccccccccceecccCceeeeeccc---------------cccc--h--------------------
Confidence             456643 3333 3456677889998887766543221               0000  0                    


Q ss_pred             CCCCcEEEEEeceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCC
Q psy12564        870 IDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSG  949 (1033)
Q Consensus       870 ~seGRiItVEf~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sG  949 (1033)
                       ..+.+.........+...+.+........+.+.................+.+++++||||......+..+........+
T Consensus       110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~  188 (275)
T d1hd7a_         110 -QEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG  188 (275)
T ss_dssp             -SSSCEEEEECSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTT
T ss_pred             -hhhheeeeeecceeeeeeeeeeccccccchhhhhhhcccccccccccccCCceEeecccccCcchhhhccchhhhcccc
Confidence             3455555565555555555554443333333222211111111111134678999999999887766654333333344


Q ss_pred             CChHHHHHHHHHHh-cCCeehhcccCCCC-CccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCCCCccc
Q psy12564        950 FTIQERNYFSNFLD-LGFLDVHRHLYPNH-RIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026 (1033)
Q Consensus       950 ft~eERa~L~eLLs-aGLvDA~R~~~Pd~-g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~P 1026 (1033)
                      ....+...|..++. .||.|+||..+|.. ..||||++..+ +..+.|+||||||+++++...+.++.|.....+|||+|
T Consensus       189 ~~~~e~~~~~~~l~~~~~~D~~r~~~p~~~~~~t~~~~~~~~~~~~~g~RIDyi~vs~~l~~~v~~~~i~~~~~~SDH~P  268 (275)
T d1hd7a_         189 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP  268 (275)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGGGEEEEEECTTCCSSSBCC
T ss_pred             cccccchhhhhhhcccCcccceeeecCCcCCceeeccccCCcccCCCCeEeEEEEeChHHhhheeEEEECCCCCCCCccc
Confidence            55566677777665 68999999998865 67999988765 45567789999999999988889999988777899999


Q ss_pred             eEEEEEC
Q psy12564       1027 QILYLNL 1033 (1033)
Q Consensus      1027 ViLdLdL 1033 (1033)
                      |+++|+|
T Consensus       269 V~v~l~l  275 (275)
T d1hd7a_         269 ITLYLAL  275 (275)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            9999976
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure