Psyllid ID: psy12626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATEIFTWRSLKYQ
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccHHHHHHHHHHHHHHHHHHcccccEEEHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccHHHHHHHHHHHHHHHHEHHHcccc
Coil and Loop (DISEMBL)
MKRVKFRTNLEHEYIQNFKILQAAFKKmnvdkivpidklvkgrfQDNFEFLQWFKKFFdvnntvadydpvgarggeamgngsvrsisatqihkrttpavaprpvapkqpvakstaaapraglnsrgtpagrvdnnssrvDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQehegetpvIQNILNILYATEIFTWRSLKYQ
Flexible Loop (DISEMBL)
mkrvkfrtnleheyIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGNGSVRSISATQIHKrttpavaprpvapkqpvakstaaapraglnsrgtpagrvdnnssrvdelnsqmMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATEIFTWRSLKYQ
Low Complexity Region (SEG)
MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTpavaprpvapkqpvaKSTAAAPRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATEIFTWRSLKYQ
Disordered region (IsUnstruct)
*****FRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVG*****************************************************************************LKLTVDGLEKERDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATEIFTWRSL***
Disordered Region (DISOPRED)
MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADY***************************************************************************NSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATEIFTWR*****
Disordered Region (DISEMBL)
MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGNGSVRSISATQIHK****************************LNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATEIFTWRSLKYQ
Disordered Region (DISPRO)
MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARG*************************************************************SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATEIFTWRSLKYQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDNNSSRxxxxxxxxxxxxxxxxxxxxxRDFYFGKLRDIEVLCQEHEGETPVIQNILNILYATEIFTWRSLKYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q5R7Z5	268	Microtubule-associated pr	yes	N/A	0.926	0.708	0.565	5e-54
Q15691	268	Microtubule-associated pr	yes	N/A	0.926	0.708	0.565	7e-54
Q61166	268	Microtubule-associated pr	yes	N/A	0.926	0.708	0.560	3e-53
Q66HR2	268	Microtubule-associated pr	yes	N/A	0.926	0.708	0.555	8e-53
Q3ZBD9	268	Microtubule-associated pr	no	N/A	0.926	0.708	0.550	3e-52
Q6P848	269	Microtubule-associated pr	yes	N/A	0.921	0.702	0.54	8e-52
Q5XIT1	281	Microtubule-associated pr	no	N/A	0.921	0.672	0.524	2e-51
Q6PER3	281	Microtubule-associated pr	no	N/A	0.921	0.672	0.524	2e-51
Q9UPY8	281	Microtubule-associated pr	no	N/A	0.912	0.665	0.523	2e-51
Q6V291	263	Microtubule-associated pr	N/A	N/A	0.907	0.707	0.532	2e-50

>sp|Q5R7Z5|MARE1_PONAB Microtubule-associated protein RP/EB family member 1 OS=Pongo abelii GN=MAPRE1 PE=2 SV=3

 Score =  210 bits (535), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 142/198 (71%), Gaps = 8/198 (4%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVA-KSTAAAPR 119
           N    DYDPV AR G+        S+ A  ++K   P ++    AP++P++ + TAAAP+
Sbjct: 118 NYDGKDYDPVAARQGQE--TAVAPSLVAPALNKPKKP-LSSSSAAPQRPISTQRTAAAPK 174

Query: 120 AGLN-SRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE 178
           AG    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+E
Sbjct: 175 AGPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENE 232

Query: 179 GET-PVIQNILNILYATE 195
           GE  PV+Q I++ILYAT+
Sbjct: 233 GENDPVLQRIVDILYATD 250

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.
Pongo abelii (taxid: 9601)

>sp|Q15691|MARE1_HUMAN Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3

 Score =  209 bits (533), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 141/198 (71%), Gaps = 8/198 (4%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVA-KSTAAAPR 119
           N    DYDPV AR G+        S+ A  ++K   P +     AP++P++ + TAAAP+
Sbjct: 118 NYDGKDYDPVAARQGQE--TAVAPSLVAPALNKPKKP-LTSSSAAPQRPISTQRTAAAPK 174

Query: 120 AGLN-SRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE 178
           AG    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+E
Sbjct: 175 AGPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENE 232

Query: 179 GET-PVIQNILNILYATE 195
           GE  PV+Q I++ILYAT+
Sbjct: 233 GENDPVLQRIVDILYATD 250

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Homo sapiens (taxid: 9606)

>sp|Q61166|MARE1_MOUSE Microtubule-associated protein RP/EB family member 1 OS=Mus musculus GN=Mapre1 PE=1 SV=3

 Score =  207 bits (528), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/198 (56%), Positives = 139/198 (70%), Gaps = 8/198 (4%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVA-KSTAAAPR 119
           N    +YDPV AR G+        S+ A  + K   P +     AP++P+A + T AAP+
Sbjct: 118 NYDGKEYDPVAARQGQE--TAVAPSLVAPALSKPKKP-LGSSTAAPQRPIATQRTTAAPK 174

Query: 120 AGLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE 178
           AG    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+E
Sbjct: 175 AGPGMVRKNPG--VGNGDDEAAELMQQVKVLKLTVEDLEKERDFYFGKLRNIELICQENE 232

Query: 179 GET-PVIQNILNILYATE 195
           GE  PV+Q I++ILYAT+
Sbjct: 233 GENDPVLQRIVDILYATD 250

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes (By similarity). May play a role in cell migration.

Mus musculus (taxid: 10090)

>sp|Q66HR2|MARE1_RAT Microtubule-associated protein RP/EB family member 1 OS=Rattus norvegicus GN=Mapre1 PE=1 SV=3

 Score =  206 bits (524), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 110/198 (55%), Positives = 139/198 (70%), Gaps = 8/198 (4%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVA-KSTAAAPR 119
           N    +YDPV AR G+        S+ A  + K   P +     AP++P+A + T AAP+
Sbjct: 118 NYDGKEYDPVAARQGQE--TAVAPSLVAPALSKPKKP-LGSGSAAPQRPIATQRTTAAPK 174

Query: 120 AGLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE 178
           AG    R  P   + N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+E
Sbjct: 175 AGPGMVRKNPG--MGNGDDEAAELMQQVKVLKLTVEDLEKERDFYFGKLRNIELICQENE 232

Query: 179 GET-PVIQNILNILYATE 195
           GE  PV+Q I++ILYAT+
Sbjct: 233 GENDPVLQRIVDILYATD 250

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Rattus norvegicus (taxid: 10116)

>sp|Q3ZBD9|MARE1_BOVIN Microtubule-associated protein RP/EB family member 1 OS=Bos taurus GN=MAPRE1 PE=2 SV=3

 Score =  204 bits (519), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/198 (55%), Positives = 138/198 (69%), Gaps = 8/198 (4%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKS-TAAAPR 119
           N    +YDPV AR G+        S+ A  ++K   P ++    AP++P+    T A P+
Sbjct: 118 NYDGKEYDPVAARQGQETAMAP--SLVAPALNKPKKP-LSSSSAAPQRPITTHRTTATPK 174

Query: 120 AGLN-SRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE 178
           AG    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+E
Sbjct: 175 AGPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENE 232

Query: 179 GE-TPVIQNILNILYATE 195
           GE  PV+Q I++ILYAT+
Sbjct: 233 GENNPVLQRIVDILYATD 250

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Bos taurus (taxid: 9913)

>sp|Q6P848|MARE1_XENTR Microtubule-associated protein RP/EB family member 1 OS=Xenopus tropicalis GN=mapre1 PE=2 SV=1

 Score =  203 bits (516), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 108/200 (54%), Positives = 139/200 (69%), Gaps = 11/200 (5%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFK+LQA FKKM VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKVLQAGFKKMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPA----VAPRPVAPKQPVAKSTAA 116
           N    DYDPV AR G+   +  V  ++A  ++K   P      AP+   P Q  A S   
Sbjct: 118 NYDGKDYDPVAARQGQE--SAPVPVLAAPVLNKPKKPLGSGNTAPQRTVPVQRTAVSN-K 174

Query: 117 APRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQE 176
            P  G++ +    G  D+ S+   EL  Q+  LK+TV+ LEKERDFYFGKLR+IE++CQE
Sbjct: 175 PPAQGISKKPATVGNGDDESA---ELIQQINVLKITVEDLEKERDFYFGKLRNIELICQE 231

Query: 177 HEGET-PVIQNILNILYATE 195
           +EGE+ PV+Q I+ ILYAT+
Sbjct: 232 NEGESDPVLQRIIEILYATD 251

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes.

Xenopus tropicalis (taxid: 8364)

>sp|Q5XIT1|MARE3_RAT Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus GN=Mapre3 PE=1 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 143/208 (68%), Gaps = 19/208 (9%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +++VKF+  LEHEYI NFK+LQAAFKKM VDKI+P++KLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMG----------NGSVRSISATQIHKRTTPAVAPRPVAPKQPV 110
           N    DY+P+ AR G+ +           N S + I  T + +RT+P   P+ +   Q  
Sbjct: 118 NYDGKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLI-GTAVPQRTSP-TGPKNM---QTS 172

Query: 111 AKSTAAAPRAGLNSRGTPAGRVDNNS--SRVDELNSQMMDLKLTVDGLEKERDFYFGKLR 168
            + +  AP   L  +  P+ R   +   +++ ELN Q++DLKLTVDGLEKERDFYF KLR
Sbjct: 173 GRLSNVAPPCILR-KNPPSARNGGHEADAQILELNQQLLDLKLTVDGLEKERDFYFSKLR 231

Query: 169 DIEVLCQEHEGE-TPVIQNILNILYATE 195
           DIE++CQEHE E +PVI  I+ ILYATE
Sbjct: 232 DIELICQEHESENSPVISGIIGILYATE 259

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Rattus norvegicus (taxid: 10116)

>sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB family member 3 OS=Mus musculus GN=Mapre3 PE=1 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 143/208 (68%), Gaps = 19/208 (9%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +++VKF+  LEHEYI NFK+LQAAFKKM VDKI+P++KLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMG----------NGSVRSISATQIHKRTTPAVAPRPVAPKQPV 110
           N    DY+P+ AR G+ +           N S + I  T + +RT+P   P+ +   Q  
Sbjct: 118 NYDGKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLI-GTAVPQRTSP-TGPKNM---QTS 172

Query: 111 AKSTAAAPRAGLNSRGTPAGRVDNNS--SRVDELNSQMMDLKLTVDGLEKERDFYFGKLR 168
            + +  AP   L  +  P+ R   +   +++ ELN Q++DLKLTVDGLEKERDFYF KLR
Sbjct: 173 GRLSNVAPPCILR-KNPPSARNGGHEADAQILELNQQLLDLKLTVDGLEKERDFYFSKLR 231

Query: 169 DIEVLCQEHEGE-TPVIQNILNILYATE 195
           DIE++CQEHE E +PVI  I+ ILYATE
Sbjct: 232 DIELICQEHESENSPVISGIIGILYATE 259

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Mus musculus (taxid: 10090)

>sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1

 Score =  201 bits (511), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/210 (52%), Positives = 142/210 (67%), Gaps = 23/210 (10%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +++VKF+  LEHEYI NFK+LQAAFKKM VDKI+P++KLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMG----------NGSVRSISATQIHKRTTPAVAPRPVAPK--Q 108
           N    DY+P+ AR G+ +           N S + I  T + +RT+      P  PK  Q
Sbjct: 118 NYDGKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLI-GTAVPQRTS------PTGPKNMQ 170

Query: 109 PVAKSTAAAPRAGLNSRGTPAGRVDNNSS--RVDELNSQMMDLKLTVDGLEKERDFYFGK 166
              + +  AP   L  +  P+ R   + +  ++ ELN Q++DLKLTVDGLEKERDFYF K
Sbjct: 171 TSGRLSNVAPPCILR-KNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSK 229

Query: 167 LRDIEVLCQEHEGE-TPVIQNILNILYATE 195
           LRDIE++CQEHE E +PVI  I+ ILYATE
Sbjct: 230 LRDIELICQEHESENSPVISGIIGILYATE 259

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Homo sapiens (taxid: 9606)

>sp|Q6V291|MARE1_COTCO Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix GN=MAPRE1 PE=2 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/197 (53%), Positives = 139/197 (70%), Gaps = 11/197 (5%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFK+LQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQP-VAKSTAAAPR 119
           N    +YDPV AR G+        ++ A  ++K   P +     AP++P VA+ T A P+
Sbjct: 118 NYDGKEYDPVAARQGQET---VAPNLVAPVMNKPKKP-LGTGSAAPQRPIVAQRTPATPK 173

Query: 120 AGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
            G       AG  D ++  ++++N     LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct: 174 GGTGMVKKAAGD-DESAGLIEQINV----LKLTVEDLEKERDFYFGKLRNIELICQENEG 228

Query: 180 ET-PVIQNILNILYATE 195
           E  PV+Q I+ ILYAT+
Sbjct: 229 ENDPVLQRIVEILYATD 245

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes.

Coturnix coturnix (taxid: 9091)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
157104780	285	microtubule binding protein, putative [A	0.941	0.677	0.565	1e-56
121543959	281	putative microtubule-associated protein	0.931	0.679	0.603	3e-56
157104782	288	microtubule binding protein, putative [A	0.941	0.670	0.562	4e-55
350539852	267	uncharacterized protein LOC100164335 [Ac	0.892	0.685	0.559	6e-55
239788557	273	ACYPI005363 [Acyrthosiphon pisum]	0.941	0.706	0.590	9e-55
45552459	290	Eb1, isoform E [Drosophila melanogaster]	0.951	0.672	0.529	2e-54
91086477	275	PREDICTED: similar to microtubule-associ	0.912	0.68	0.552	2e-54
196008825	216	hypothetical protein TRIADDRAFT_57922 [T	0.902	0.856	0.593	3e-54
328780987	286	PREDICTED: microtubule-associated protei	0.926	0.664	0.570	4e-54
19921706	291	Eb1, isoform B [Drosophila melanogaster]	0.951	0.670	0.536	4e-54

>gi|157104780|ref|XP_001648565.1| microtubule binding protein, putative [Aedes aegypti] gi|94469182|gb|ABF18440.1| microtubule-associated protein [Aedes aegypti] gi|108880213|gb|EAT44438.1| AAEL004176-PA [Aedes aegypti]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/214 (56%), Positives = 149/214 (69%), Gaps = 21/214 (9%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           MKR+KFRTNLEHEYIQNFKILQAAFKKMNVDKI+PIDKL+KGRFQDNFEFLQWFKKFFD 
Sbjct: 58  MKRIKFRTNLEHEYIQNFKILQAAFKKMNVDKIIPIDKLIKGRFQDNFEFLQWFKKFFDA 117

Query: 61  NNTVADYDPVGAR-------GGEAMGNGSVRSISATQIHKRTTPAVAP------RPVAPK 107
           N    +YD   AR       GG     G+  +++A  + +R  P V+       +P+ P 
Sbjct: 118 NYDGREYDAYLARDNLPMGMGGAGAPKGNGVAVAAASVPRR-APLVSSTSRDKIKPITPS 176

Query: 108 QPVAKSTAAAPRAGLNSRGTPAGRVDNNS---SRVDELNSQMMDLKLTVDGLEKERDFYF 164
           +P+A+ T + P  GL S    +     NS    +V+EL +Q+MD++L ++GLEKERDFYF
Sbjct: 177 RPMAQ-TVSRPAGGLGSTANASKSSSQNSVTNQQVEELTTQVMDMRLHLEGLEKERDFYF 235

Query: 165 GKLRDIEVLCQEHE-GETP--VIQNILNILYATE 195
            KLRDIE+LCQE E  ETP  +IQ ILNILYATE
Sbjct: 236 SKLRDIEILCQEDEQNETPNSLIQRILNILYATE 269

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543959|gb|ABM55644.1| putative microtubule-associated protein RP/EB family member 3 [Maconellicoccus hirsutus]

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/207 (60%), Positives = 144/207 (69%), Gaps = 16/207 (7%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +KRVKFRTNLEHEYIQNFKILQAAFKKMNVDKI+PIDKLVKGRFQDNFEFLQWFKKF+DV
Sbjct: 58  LKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIIPIDKLVKGRFQDNFEFLQWFKKFYDV 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISAT-QIHKR--TTPAVAPRPVAPKQPVAKSTAAA 117
           NN   +YD + AR GE +G G+  S  +T  + K+  T+      P  P      + A  
Sbjct: 118 NNNFEEYDALAARNGEPLGGGAGGSSKSTCNLAKKLSTSKLDTSHPTKPTGMARATVAGR 177

Query: 118 PRAGLN-----SRGTP----AGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLR 168
           P A        +R  P    AGR D   ++ DEL  Q+M+LK+T+DGLEKERDFYFGKLR
Sbjct: 178 PTATSTTSSSVARHAPNQHHAGRGD---AKTDELTQQLMELKVTLDGLEKERDFYFGKLR 234

Query: 169 DIEVLCQEHEGETPVIQNILNILYATE 195
           DIEVLCQE E   P IQ IL ILYATE
Sbjct: 235 DIEVLCQEEEA-NPCIQKILEILYATE 260

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104782|ref|XP_001648566.1| microtubule binding protein, putative [Aedes aegypti] gi|108880214|gb|EAT44439.1| AAEL004176-PB [Aedes aegypti]

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/217 (56%), Positives = 149/217 (68%), Gaps = 24/217 (11%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           MKR+KFRTNLEHEYIQNFKILQAAFKKMNVDKI+PIDKL+KGRFQDNFEFLQWFKKFFD 
Sbjct: 58  MKRIKFRTNLEHEYIQNFKILQAAFKKMNVDKIIPIDKLIKGRFQDNFEFLQWFKKFFDA 117

Query: 61  NNTVADYDPVGAR-------GGEAMGNGSVRSISATQIHKRTTPAVAP------RP---V 104
           N    +YD   AR       GG     G+  +++A  + +R  P V+       +P   V
Sbjct: 118 NYDGREYDAYLARDNLPMGMGGAGAPKGNGVAVAAASVPRR-APLVSSTSRDKIKPMSKV 176

Query: 105 APKQPVAKSTAAAPRAGLNSRGTPAGRVDNNS---SRVDELNSQMMDLKLTVDGLEKERD 161
            P +P+A+ T + P  GL S    +     NS    +V+EL +Q+MD++L ++GLEKERD
Sbjct: 177 TPSRPMAQ-TVSRPAGGLGSTANASKSSSQNSVTNQQVEELTTQVMDMRLHLEGLEKERD 235

Query: 162 FYFGKLRDIEVLCQEHE-GETP--VIQNILNILYATE 195
           FYF KLRDIE+LCQE E  ETP  +IQ ILNILYATE
Sbjct: 236 FYFSKLRDIEILCQEDEQNETPNSLIQRILNILYATE 272

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350539852|ref|NP_001233102.1| uncharacterized protein LOC100164335 [Acyrthosiphon pisum] gi|239788559|dbj|BAH70954.1| ACYPI005363 [Acyrthosiphon pisum]

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 135/202 (66%), Gaps = 19/202 (9%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           MKRVKFRTNLEHEYIQNFKILQ AFKKM VDK++P+D+L+KGRFQDNFEFLQWFKKFFD 
Sbjct: 58  MKRVKFRTNLEHEYIQNFKILQGAFKKMAVDKVIPVDRLIKGRFQDNFEFLQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRA 120
           N    DYD + ARGG  +G+G+   +   Q         AP P   + P A     +P  
Sbjct: 118 NYDGRDYDGLDARGGVMIGSGAA-EVCGFQ---------APPPY--RVPQAARAYKSPSY 165

Query: 121 GLNSR-------GTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVL 173
           G  S          PA + D    +++EL  QM +L++TVDGLEKERDFYFGKLRDIEV+
Sbjct: 166 GHVSNRVPTTRPAAPANQRDRGDHKIEELTRQMSELRVTVDGLEKERDFYFGKLRDIEVI 225

Query: 174 CQEHEGETPVIQNILNILYATE 195
           CQE E E P+   +L ILYATE
Sbjct: 226 CQEQESEHPLFSKVLEILYATE 247

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788557|dbj|BAH70953.1| ACYPI005363 [Acyrthosiphon pisum]

 Score =  218 bits (556), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 138/198 (69%), Gaps = 5/198 (2%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           MKRVKFRTNLEHEYIQNFKILQ AFKKM VDKIVPID+LVKGRFQDNFEFLQWFKKFFD 
Sbjct: 58  MKRVKFRTNLEHEYIQNFKILQGAFKKMAVDKIVPIDRLVKGRFQDNFEFLQWFKKFFDT 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPV---AKSTAAA 117
           N  + DYDPVGAR GE MG     + +     K+ + AV PR    +  +   A ++  +
Sbjct: 118 NYQMNDYDPVGARSGEGMGAAGAAARAGPV--KKPSAAVPPRNATTQNRLFRPASNSNMS 175

Query: 118 PRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEH 177
            R        PA + D    +++EL  QM +L++TVDGLEKERDFYFGKLRDIEV+ QE 
Sbjct: 176 NRVPTTRPAAPANQRDRGDHKIEELTRQMSELRVTVDGLEKERDFYFGKLRDIEVIYQEQ 235

Query: 178 EGETPVIQNILNILYATE 195
           E E P+   +L ILYATE
Sbjct: 236 ESEHPLFSKVLEILYATE 253

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552459|ref|NP_995752.1| Eb1, isoform E [Drosophila melanogaster] gi|4689344|gb|AAD27859.1|AF132560_1 LD08743p [Drosophila melanogaster] gi|45445430|gb|AAS64780.1| Eb1, isoform E [Drosophila melanogaster] gi|220950444|gb|ACL87765.1| Eb1-PE [synthetic construct]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/217 (52%), Positives = 148/217 (68%), Gaps = 22/217 (10%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +KRVKFRTNLEHEYIQNFKILQA FKKM+VDKI+PIDKLVKGRFQDNFEFLQWFKKFFD 
Sbjct: 58  VKRVKFRTNLEHEYIQNFKILQAGFKKMSVDKIIPIDKLVKGRFQDNFEFLQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAM--GNGSVRSISATQIHK-----RTTPAVAPRP--VAPKQPVA 111
           N    DYD    R G  M  G+G+V+S+  T         R  P+   RP   +  +P++
Sbjct: 118 NYDGRDYDASAVREGAPMGFGSGAVKSLPGTAASGVSSSYRRGPSATTRPAMTSAVKPIS 177

Query: 112 K----STAAAPRAGLNSRGTPAGRVDN-------NSSRVDELNSQMMDLKLTVDGLEKER 160
           K    +  AAP + +N+     G V         N+ +++E+++Q+MD+++ ++GLEKER
Sbjct: 178 KVLPRTNNAAPASRINACANSTGTVKKNDVSNSVNNQQIEEMSNQVMDMRINLEGLEKER 237

Query: 161 DFYFGKLRDIEVLCQEHEGET--PVIQNILNILYATE 195
           DFYF KLRDIE+LCQE +     P+IQ IL+ILYATE
Sbjct: 238 DFYFSKLRDIEILCQEADDAEAHPIIQKILDILYATE 274

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086477|ref|XP_975920.1| PREDICTED: similar to microtubule-associated protein RP/EB family member 3 isoform 3 [Tribolium castaneum]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/208 (55%), Positives = 139/208 (66%), Gaps = 21/208 (10%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +KRVKFRTNLEHEYIQNFKILQA FKKM VDKI+P+DKL+KGRFQDNFEFLQWFKKFFD 
Sbjct: 58  LKRVKFRTNLEHEYIQNFKILQAGFKKMGVDKIIPVDKLIKGRFQDNFEFLQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHK--RTTPAVAPRPVAPKQPVAKSTAAAP 118
           N    DYD + ARGG  +G       SA   H      P  AP   AP +   ++T    
Sbjct: 118 NYDGRDYDAIEARGGIGLG-------SAAHEHHVGGLVPHHAPAKPAPTRQGKRTTGPMA 170

Query: 119 RAGLNS----------RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLR 168
           +  LN+             P  +   ++ R+DEL +Q+ D K+T+DGLEKERDFYFGKLR
Sbjct: 171 KPTLNNMPKVNTVRPITKNPQNK-GGDAGRLDELTNQIADFKITIDGLEKERDFYFGKLR 229

Query: 169 DIEVLCQEHE-GETPVIQNILNILYATE 195
           DIEV+CQE E  + P+IQ IL++LYATE
Sbjct: 230 DIEVMCQESEDAQNPLIQKILDVLYATE 257

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|196008825|ref|XP_002114278.1| hypothetical protein TRIADDRAFT_57922 [Trichoplax adhaerens] gi|190583297|gb|EDV23368.1| hypothetical protein TRIADDRAFT_57922 [Trichoplax adhaerens]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/197 (59%), Positives = 138/197 (70%), Gaps = 12/197 (6%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           + +VKF T LEHEYIQNFKILQ AFKK  VDK VPI++L+KGRFQDNFEFLQWFK+FFD 
Sbjct: 10  LSKVKFNTQLEHEYIQNFKILQIAFKKAGVDKTVPIERLIKGRFQDNFEFLQWFKRFFDA 69

Query: 61  N-NTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPR 119
           N N   DYDPV ARGG A      RS +     KRTT  V    V  K P  K    AP 
Sbjct: 70  NCNDSVDYDPVNARGGTAS-----RSANTGAATKRTTAGVRTTGVKSK-PAEKPRTMAP- 122

Query: 120 AGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
           AG  ++  PA    NNS++V+ELN+Q+ +LKLTV+GLEKERDFYF KLRDIEVLCQ+   
Sbjct: 123 AGRTTKRAPAS---NNSNQVNELNAQITELKLTVEGLEKERDFYFNKLRDIEVLCQQDTA 179

Query: 180 -ETPVIQNILNILYATE 195
            ++P+I  IL I+YATE
Sbjct: 180 HDSPIIAQILEIMYATE 196

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|328780987|ref|XP_623370.2| PREDICTED: microtubule-associated protein RP/EB family member 1-like isoform 2 [Apis mellifera]

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 147/212 (69%), Gaps = 22/212 (10%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +KRVKF+TNLEHEYIQNFKILQ  FKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFD 
Sbjct: 58  LKRVKFKTNLEHEYIQNFKILQGGFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDA 117

Query: 61  NNTVAD-YDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAK----STA 115
           N +  + YD +  RGGE MG+G   +   T   KRTT    PR V   +P A+     T 
Sbjct: 118 NYSRTEPYDALAMRGGEPMGSGGSNAPHGTNT-KRTT----PRDVNSAKPAARIGKTHTT 172

Query: 116 AAPRAGLNSRGT--PAGR------VDN--NSSRVDELNSQMMDLKLTVDGLEKERDFYFG 165
             P   LN   T  PA R      V N   + +V+EL++Q+M+LK++++GLEKERDFYFG
Sbjct: 173 DLPVPTLNDTLTKAPAHRPQAKTGVGNRGEAGKVEELSAQVMELKMSLEGLEKERDFYFG 232

Query: 166 KLRDIEVLCQEHEG--ETPVIQNILNILYATE 195
           KLRDIEV+CQ+ +     P++Q IL +LYATE
Sbjct: 233 KLRDIEVMCQDCDNGDPPPIVQKILEVLYATE 264

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921706|ref|NP_610233.1| Eb1, isoform B [Drosophila melanogaster] gi|24586069|ref|NP_724496.1| Eb1, isoform A [Drosophila melanogaster] gi|24586072|ref|NP_724497.1| Eb1, isoform D [Drosophila melanogaster] gi|442622522|ref|NP_001260734.1| Eb1, isoform G [Drosophila melanogaster] gi|17945913|gb|AAL49002.1| RE41364p [Drosophila melanogaster] gi|21645126|gb|AAM70826.1| Eb1, isoform A [Drosophila melanogaster] gi|21645127|gb|AAM70827.1| Eb1, isoform B [Drosophila melanogaster] gi|21645128|gb|AAM70828.1| Eb1, isoform D [Drosophila melanogaster] gi|220949000|gb|ACL87043.1| Eb1-PA [synthetic construct] gi|220958162|gb|ACL91624.1| Eb1-PA [synthetic construct] gi|440214118|gb|AGB93267.1| Eb1, isoform G [Drosophila melanogaster]

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/218 (53%), Positives = 147/218 (67%), Gaps = 23/218 (10%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +KRVKFRTNLEHEYIQNFKILQA FKKM+VDKI+PIDKLVKGRFQDNFEFLQWFKKFFD 
Sbjct: 58  VKRVKFRTNLEHEYIQNFKILQAGFKKMSVDKIIPIDKLVKGRFQDNFEFLQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAM--GNGSVRSISATQIHK-----RTTPAVAPRPV---APKQPV 110
           N    DYD    R G  M  G+G+V+S+  T         R  P+   RP    A K  V
Sbjct: 118 NYDGRDYDASAVREGAPMGFGSGAVKSLPGTAASGVSSSYRRGPSATTRPAMTSAVKPTV 177

Query: 111 AK----STAAAPRAGLNSRGTPAGRVDN-------NSSRVDELNSQMMDLKLTVDGLEKE 159
           +K    +  AAP + +N+     G V         N+ +++E+++Q+MD+++ ++GLEKE
Sbjct: 178 SKVLPRTNNAAPASRINACANSTGTVKKNDVSNSVNNQQIEEMSNQVMDMRINLEGLEKE 237

Query: 160 RDFYFGKLRDIEVLCQEHEGET--PVIQNILNILYATE 195
           RDFYF KLRDIE+LCQE +     P+IQ IL+ILYATE
Sbjct: 238 RDFYFSKLRDIEILCQEADDAEAHPIIQKILDILYATE 275

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
FB|FBgn0027066	297	Eb1 "Eb1" [Drosophila melanoga	0.4	0.276	0.780	6.9e-53
UNIPROTKB|Q15691	268	MAPRE1 "Microtubule-associated	0.931	0.712	0.548	1.5e-49
UNIPROTKB|Q5R7Z5	268	MAPRE1 "Microtubule-associated	0.931	0.712	0.548	1.5e-49
ZFIN|ZDB-GENE-050913-88	259	mapre3a "microtubule-associate	0.370	0.293	0.671	4.2e-49
UNIPROTKB|Q2XVP5	268	MAPRE1 "Microtubule-associated	0.931	0.712	0.543	8.5e-49
MGI|MGI:891995	268	Mapre1 "microtubule-associated	0.931	0.712	0.538	1.4e-48
UNIPROTKB|E2QYH4	268	MAPRE1 "Uncharacterized protei	0.931	0.712	0.538	1.8e-48
UNIPROTKB|F6Y5Z5	290	MAPRE1 "Uncharacterized protei	0.931	0.658	0.538	1.8e-48
UNIPROTKB|F1MHV5	268	LOC100848087 "Uncharacterized	0.931	0.712	0.532	3.7e-48
UNIPROTKB|Q3ZBD9	268	MAPRE1 "Microtubule-associated	0.931	0.712	0.532	3.7e-48

FB|FBgn0027066 Eb1 "Eb1" [Drosophila melanogaster (taxid:7227)]

 Score = 355 (130.0 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 64/82 (78%), Positives = 72/82 (87%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +KRVKFRTNLEHEYIQNFKILQA FKKM+VDKI+P+DKL+KGRFQDNFEFLQWFKKFFD 
Sbjct:    58 VKRVKFRTNLEHEYIQNFKILQAGFKKMSVDKIIPVDKLIKGRFQDNFEFLQWFKKFFDA 117

Query:    61 NNTVADYDPVGARGGEAMGNGS 82
             N    +YDPV  RGG  +GNG+
Sbjct:   118 NYDGREYDPVAQRGGVKLGNGN 139

GO:0005875 "microtubule associated complex" evidence=ISS;IDA;TAS

GO:0007017 "microtubule-based process" evidence=ISS;TAS

GO:0008017 "microtubule binding" evidence=IEA;ISS;TAS

GO:0005874 "microtubule" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP;IDA

GO:0051225 "spindle assembly" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IDA

GO:0040001 "establishment of mitotic spindle localization" evidence=TAS

GO:0007052 "mitotic spindle organization" evidence=TAS

GO:0005876 "spindle microtubule" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0007629 "flight behavior" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0007423 "sensory organ development" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0035371 "microtubule plus end" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030589 "pseudocleavage involved in syncytial blastoderm formation" evidence=IMP

GO:0030951 "establishment or maintenance of microtubule cytoskeleton polarity" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IDA

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

UNIPROTKB|Q15691 MAPRE1 "Microtubule-associated protein RP/EB family member 1" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 108/197 (54%), Positives = 132/197 (67%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct:    58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query:    61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
             N    DYDPV AR G+        S+ A  ++K                  + TAAAP+A
Sbjct:   118 NYDGKDYDPVAARQGQE--TAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKA 175

Query:   121 GLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
             G    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct:   176 GPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEG 233

Query:   180 ET-PVIQNILNILYATE 195
             E  PV+Q I++ILYAT+
Sbjct:   234 ENDPVLQRIVDILYATD 250

GO:0051301 "cell division" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0031253 "cell projection membrane" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005819 "spindle" evidence=IDA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IDA

GO:0051010 "microtubule plus-end binding" evidence=IDA

GO:0030981 "cortical microtubule cytoskeleton" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0035372 "protein localization to microtubule" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5R7Z5 MAPRE1 "Microtubule-associated protein RP/EB family member 1" [Pongo abelii (taxid:9601)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 108/197 (54%), Positives = 132/197 (67%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct:    58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query:    61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
             N    DYDPV AR G+        S+ A  ++K                  + TAAAP+A
Sbjct:   118 NYDGKDYDPVAARQGQE--TAVAPSLVAPALNKPKKPLSSSSAAPQRPISTQRTAAAPKA 175

Query:   121 GLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
             G    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct:   176 GPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEG 233

Query:   180 ET-PVIQNILNILYATE 195
             E  PV+Q I++ILYAT+
Sbjct:   234 ENDPVLQRIVDILYATD 250

GO:0005874 "microtubule" evidence=ISS

GO:0030981 "cortical microtubule cytoskeleton" evidence=ISS

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISS

GO:0035372 "protein localization to microtubule" evidence=ISS

GO:0051010 "microtubule plus-end binding" evidence=ISS

GO:0005819 "spindle" evidence=ISS

ZFIN|ZDB-GENE-050913-88 mapre3a "microtubule-associated protein, RP/EB family, member 3a" [Danio rerio (taxid:7955)]

 Score = 300 (110.7 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 51/76 (67%), Positives = 66/76 (86%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +K+VKF+  LEHE+I NFK+LQAAFK+MNVDKI+P+++LVKG+FQDNFEF+QWFKKFFD 
Sbjct:    58 LKKVKFQAKLEHEFIHNFKVLQAAFKRMNVDKIIPVERLVKGKFQDNFEFVQWFKKFFDA 117

Query:    61 NNTVADYDPVGARGGE 76
             N    +YDP+ AR G+
Sbjct:   118 NYDGKEYDPIQARQGQ 133

GO:0008017 "microtubule binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2XVP5 MAPRE1 "Microtubule-associated protein RP/EB family member 1" [Sus scrofa (taxid:9823)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 107/197 (54%), Positives = 130/197 (65%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct:    58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query:    61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
             N    DYDPV AR G+        S+ A  ++K                    T AAP+A
Sbjct:   118 NYDGKDYDPVAARQGQE--TAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKA 175

Query:   121 GLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
             G    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct:   176 GPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEG 233

Query:   180 ET-PVIQNILNILYATE 195
             E  PV+Q I++ILYAT+
Sbjct:   234 ENNPVLQRIVDILYATD 250

GO:0005874 "microtubule" evidence=ISS

GO:0051010 "microtubule plus-end binding" evidence=ISS

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISS

GO:0030981 "cortical microtubule cytoskeleton" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0035372 "protein localization to microtubule" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0031253 "cell projection membrane" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

MGI|MGI:891995 Mapre1 "microtubule-associated protein, RP/EB family, member 1" [Mus musculus (taxid:10090)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 106/197 (53%), Positives = 130/197 (65%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct:    58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query:    61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
             N    +YDPV AR G+        S+ A  + K                  + T AAP+A
Sbjct:   118 NYDGKEYDPVAARQGQE--TAVAPSLVAPALSKPKKPLGSSTAAPQRPIATQRTTAAPKA 175

Query:   121 GLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
             G    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct:   176 GPGMVRKNPG--VGNGDDEAAELMQQVKVLKLTVEDLEKERDFYFGKLRNIELICQENEG 233

Query:   180 ET-PVIQNILNILYATE 195
             E  PV+Q I++ILYAT+
Sbjct:   234 ENDPVLQRIVDILYATD 250

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=ISO;IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0030981 "cortical microtubule cytoskeleton" evidence=ISO

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISO

GO:0031253 "cell projection membrane" evidence=IDA

GO:0035371 "microtubule plus end" evidence=IDA

GO:0035372 "protein localization to microtubule" evidence=ISO;IMP

GO:0042995 "cell projection" evidence=IDA

GO:0051010 "microtubule plus-end binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|E2QYH4 MAPRE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 106/197 (53%), Positives = 129/197 (65%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct:    58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query:    61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
             N    DYDPV AR G+        S+ A  ++K                    T A P+A
Sbjct:   118 NYDGKDYDPVAARQGQE--TAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKA 175

Query:   121 GLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
             G    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct:   176 GPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEG 233

Query:   180 ET-PVIQNILNILYATE 195
             E  PV+Q I++ILYAT+
Sbjct:   234 ENNPVLQRIVDILYATD 250

GO:0008017 "microtubule binding" evidence=IEA

UNIPROTKB|F6Y5Z5 MAPRE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 106/197 (53%), Positives = 129/197 (65%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct:    81 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 140

Query:    61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
             N    DYDPV AR G+        S+ A  ++K                    T A P+A
Sbjct:   141 NYDGKDYDPVAARQGQE--TAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKA 198

Query:   121 GLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
             G    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct:   199 GPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEG 256

Query:   180 ET-PVIQNILNILYATE 195
             E  PV+Q I++ILYAT+
Sbjct:   257 ENNPVLQRIVDILYATD 273

GO:0008017 "microtubule binding" evidence=IEA

UNIPROTKB|F1MHV5 LOC100848087 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 105/197 (53%), Positives = 129/197 (65%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct:    58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query:    61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
             N    +YDPV AR G+        S+ A  ++K                    T A P+A
Sbjct:   118 NYDGKEYDPVAARQGQE--TAMAPSLVAPALNKPKKPLSSSSAAPQRPITTHRTTATPKA 175

Query:   121 GLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
             G    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct:   176 GPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEG 233

Query:   180 ET-PVIQNILNILYATE 195
             E  PV+Q I++ILYAT+
Sbjct:   234 ENNPVLQRIVDILYATD 250

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0035372 "protein localization to microtubule" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0031253 "cell projection membrane" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0030981 "cortical microtubule cytoskeleton" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|Q3ZBD9 MAPRE1 "Microtubule-associated protein RP/EB family member 1" [Bos taurus (taxid:9913)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 105/197 (53%), Positives = 129/197 (65%)

Query:     1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
             +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct:    58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query:    61 NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
             N    +YDPV AR G+        S+ A  ++K                    T A P+A
Sbjct:   118 NYDGKEYDPVAARQGQE--TAMAPSLVAPALNKPKKPLSSSSAAPQRPITTHRTTATPKA 175

Query:   121 GLNS-RGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
             G    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct:   176 GPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEG 233

Query:   180 ET-PVIQNILNILYATE 195
             E  PV+Q I++ILYAT+
Sbjct:   234 ENNPVLQRIVDILYATD 250

GO:0005874 "microtubule" evidence=ISS

GO:0035372 "protein localization to microtubule" evidence=ISS

GO:0051010 "microtubule plus-end binding" evidence=ISS

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISS

GO:0030981 "cortical microtubule cytoskeleton" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZLC7	MARE1_CHICK	No assigned EC number	0.5255	0.8878	0.7054	yes	N/A
Q5R7Z5	MARE1_PONAB	No assigned EC number	0.5656	0.9268	0.7089	yes	N/A
Q9FJJ5	EB1B_ARATH	No assigned EC number	0.4068	0.8780	0.6143	yes	N/A
Q15691	MARE1_HUMAN	No assigned EC number	0.5656	0.9268	0.7089	yes	N/A
Q6P848	MARE1_XENTR	No assigned EC number	0.54	0.9219	0.7026	yes	N/A
Q61166	MARE1_MOUSE	No assigned EC number	0.5606	0.9268	0.7089	yes	N/A
Q66HR2	MARE1_RAT	No assigned EC number	0.5555	0.9268	0.7089	yes	N/A
Q10113	MAL3_SCHPO	No assigned EC number	0.35	0.9414	0.6266	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	205
COG5217	342	COG5217, BIM1, Microtubule-binding protein involve	8e-29
pfam03271	43	pfam03271, EB1, EB1-like C-terminal motif	2e-15
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	0.001

>gnl|CDD|227542 COG5217, BIM1, Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

 Score =  109 bits (274), Expect = 8e-29
 Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 10/189 (5%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
              V+F    E+++  N KILQ  F    +DK V +  LV+ + QDN EFLQW K  +  
Sbjct: 49  DSLVRFPWIAEYKHPGNGKILQLLFSDYGIDKAVLVLVLVRCKLQDNLEFLQWLKDHWVR 108

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPR- 119
           N     YD    R G      S R      I     P  A R ++      KS +     
Sbjct: 109 NLGHISYDRNARRLG--RTPKSTRE-LIEWIRSLGIPISAIRELSKGVASCKSLSTIHSS 165

Query: 120 AGLNSRGTPAGRVDN------NSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVL 173
              N     AG  D           +  LN ++     T+  LE ER FYF KLR IE+L
Sbjct: 166 FPQNFVKNTAGTHDYLRAMQACQEFIGSLNIKLYFPVDTLVKLEMERAFYFNKLRSIEIL 225

Query: 174 CQEHEGETP 182
            +  + E P
Sbjct: 226 VETLKREGP 234

Length = 342

>gnl|CDD|202587 pfam03271, EB1, EB1-like C-terminal motif

 Score = 67.2 bits (165), Expect = 2e-15
 Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 4/43 (9%)

Query: 155 GLEKERDFYFGKLRDIEVLCQEHEGET----PVIQNILNILYA 193
           GLEKERDFYF KLRDIE+LCQE +        +++ I  ILYA
Sbjct: 1   GLEKERDFYFNKLRDIEILCQEAQESENSPEQLVKKIQEILYA 43

This motif is found at the C-terminus of proteins that are related to the EB1 protein. The EB1 proteins contain an N-terminal CH domain pfam00307. The human EB1 protein was originally discovered as a protein interacting with the C-terminus of the APC protein. This interaction is often disrupted in colon cancer, due to deletions affecting the APC C-terminus. Several EB1 orthologues are also included in this family. The interaction between EB1 and APC has been shown to have a potent synergistic effect on microtubule polymerisation. Neither of EB1 or APC alone has this effect. It is thought that EB1 targets APC to the + ends of microtubules, where APC promotes microtubule polymerisation. This process is regulated by APC phosphorylation by Cdc2, which disrupts APC-EB1 binding. Human EB1 protein can functionally substitute for the yeast EB1 homologue Mal3. In addition, Mal3 can substitute for human EB1 in promoting microtubule polymerisation with APC. Length = 43

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 5   KFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLV-KGRFQDNFEFLQWFKKFF 58
           K   N   +       L+ A KK+ V K++  + LV  G  +     L    + F
Sbjct: 49  KVNKNRFDKLENLNLALEFAEKKLGVPKVLEPEDLVEDGNEKLVLTLLAQLFRRF 103

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG3000|consensus	295		100.0
COG5217	342	BIM1 Microtubule-binding protein involved in cell	100.0
PF03271	43	EB1: EB1-like C-terminal motif; InterPro: IPR00495	99.81
COG5217	342	BIM1 Microtubule-binding protein involved in cell	96.38
cd00014	107	CH Calponin homology domain; actin-binding domain	93.02
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	93.01
PF11414	84	Suppressor_APC: Adenomatous polyposis coli tumour	86.86
KOG1899|consensus	861		86.25
PF01763	557	Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002	83.07

>KOG3000|consensus

Probab=100.00  E-value=1.4e-54  Score=384.70  Aligned_cols=193  Identities=46%  Similarity=0.741  Sum_probs=143.6

Q ss_pred             CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCC
Q psy12626          1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGN   80 (205)
Q Consensus         1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~   80 (205)
                      |+||||+|+.||||++|||+||.+|++|||+|+|||++|+||+|||||||+||||+|||+||+|.+|||+++|.+++++.
T Consensus        58 lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klgi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g~~yd~~~~R~~~~~~~  137 (295)
T KOG3000|consen   58 LKKVKFAARLEHEYIPNFKVLQTCFNKLGIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGGKGYDALARREGIGIGR  137 (295)
T ss_pred             cccccccccccchhhhhhHHHHHHHHhcCCcccccHHHHhcccccchHHHHHHHHHHhhccCCccccCHHHHhhcccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999997644


Q ss_pred             CCCC--CcccccccCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy12626         81 GSVR--SISATQIHKR--T-TPAVAPRPVAPKQPVAKSTAAAPRAGL---NSRGTPAGRVDNNSSRVDELNSQMMDLKLT  152 (205)
Q Consensus        81 ~~~~--~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~i~~L~~q~~elk~~  152 (205)
                      ..+.  ++..+. |.+  + +.++|...+++   .+.++.+.++..+   .....+..+...+.+++.+|.+++.+++.+
T Consensus       138 ~~~~~~~~~~s~-p~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~~~l~~~l~~~~~~  213 (295)
T KOG3000|consen  138 SAISEGSKGVSA-PKILSPVSSAAPQNFVPA---RTPQTLRNNKPCVEFGGKPNIALYPVDKLKQELEELTQQLTELKTT  213 (295)
T ss_pred             cCcccccccccc-ccccccccccCcccCCCc---cCcccccCCCCCcccccccccccccchhhhHHHHHHHHHHHHHHHh
Confidence            3322  111111 222  1 11111111110   0000001111111   001111102245588999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc-ccCc-h--HHHHHHHhhhccccC
Q psy12626        153 VDGLEKERDFYFGKLRDIEVLCQEH-EGET-P--VIQNILNILYATEIF  197 (205)
Q Consensus       153 v~~LEkERDFYF~KLRdIEilcQe~-~~~~-~--~~~~I~~ILYaTee~  197 (205)
                      +++||+||||||+|||+||||||+. +.+. +  ++++|+.|||+|+|+
T Consensus       214 ~~~le~ERdfyf~kLr~iEil~q~~~~~e~~~~~~v~rI~~ilyat~~g  262 (295)
T KOG3000|consen  214 IASLEKERDFYFSKLRDIEILCQTSPDPESIPNVMVKRILSILYATEEG  262 (295)
T ss_pred             hhhhHHHHHHHHhhccchhhhccCCCccccccHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999994 3344 6  999999999999875

>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

Probab=100.00  E-value=8.2e-37  Score=267.81  Aligned_cols=186  Identities=29%  Similarity=0.296  Sum_probs=125.7

Q ss_pred             CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCC
Q psy12626          1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGN   80 (205)
Q Consensus         1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~   80 (205)
                      |++|+|++..||+|..|+||||.+|.+.||||.+.|++||.|+||||||||||+|+||+.|+++..|||.+||.|.....
T Consensus        49 ~~~V~f~~~aey~~~~n~kILq~~Fs~~Gidk~v~v~~lvrck~qdnLeflQwlk~hWvr~~~~~~yd~~arr~~r~p~~  128 (342)
T COG5217          49 DSLVRFPWIAEYKHPGNGKILQLLFSDYGIDKAVLVLVLVRCKLQDNLEFLQWLKDHWVRNLGHISYDRNARRLGRTPKS  128 (342)
T ss_pred             HhhccccchhheecCCchhHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccChhHHhcCCCcch
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998763211


Q ss_pred             CC-C-CCcccccccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCChhh----------HHHHHHH
Q psy12626         81 GS-V-RSISATQIHKRTTPAVAP-RPVAPKQPVAKSTAAAPRAGLN--SRGTPAGRVDNNSSR----------VDELNSQ  145 (205)
Q Consensus        81 ~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~----------i~~L~~q  145 (205)
                      .. . ..++....|.+    |.+ .+.++..-.. -++.-+ .-|.  .+++     +..++.          |-.|..+
T Consensus       129 tr~~~~~~rs~~~p~s----a~r~~s~G~~s~~s-l~t~hs-s~~~N~v~~t-----a~t~~~Lra~qa~Qe~igSln~~  197 (342)
T COG5217         129 TRELIEWIRSLGIPIS----AIRELSKGVASCKS-LSTIHS-SFPQNFVKNT-----AGTHDYLRAMQACQEFIGSLNIK  197 (342)
T ss_pred             HHHHHhhhhhcCCchh----hhhhhccCcccchh-hhhhhc-ccccccccCc-----chhHHHHHHHHHHHHHhhcccee
Confidence            00 0 00000000000    000 0000000000 000000 0010  1111     122333          3344445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-------------------c-----hHHHHHHHhhhccccC
Q psy12626        146 MMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-------------------T-----PVIQNILNILYATEIF  197 (205)
Q Consensus       146 ~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~-------------------~-----~~~~~I~~ILYaTee~  197 (205)
                      +-+...++-.||.||+|||+|||+||||++....+                   +     .+.++|++|||+|+++
T Consensus       198 ly~~~~t~~~le~er~fYfnKlr~ieilv~t~k~~~~~~~~~~~~~~~~~h~~~t~~~m~~~~~rI~~ily~ta~g  273 (342)
T COG5217         198 LYFPVDTLVKLEMERAFYFNKLRSIEILVETLKREGPRASILPGTSLQCPHCKNTREIMDAKDNRIKEILYMTASG  273 (342)
T ss_pred             eeeeccccceeeeHHHHHhhhcchhHHHHHHHhhhCccccccCCccccCCccCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            55667888889999999999999999999983321                   1     4789999999999865

>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites

Probab=99.81  E-value=9.8e-21  Score=124.69  Aligned_cols=39  Identities=67%  Similarity=1.091  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccc-Cc---hHHHHHHHhhhc
Q psy12626        155 GLEKERDFYFGKLRDIEVLCQEHEG-ET---PVIQNILNILYA  193 (205)
Q Consensus       155 ~LEkERDFYF~KLRdIEilcQe~~~-~~---~~~~~I~~ILYa  193 (205)
                      +||+||||||+|||+||+|||+..+ .+   .++++|++||||
T Consensus         1 ~le~ERdFYf~KLR~IE~l~q~~~~~~~~~~~~~~~I~~ILYa   43 (43)
T PF03271_consen    1 SLEKERDFYFNKLRDIEILCQEANESENEPKDLIKKIQEILYA   43 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHCCTC--HHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHhcC
Confidence            6899999999999999999999543 32   489999999997

EB1 members have a bipartite composition: the N-terminal CH domain (IPR001715 from INTERPRO) mediates microtubule plus end localization and a C-terminal cargo binding domain (EB1-C) that captures cell polarity determinants. The EB1-C domain comprises a unique EB1-like sequence motif that acts as a binding site for other +TIP proteins. It interacts with the carboxy terminus of the adenomatous polyposis coli (APC) tumor suppressor, a well conserved +TIP phosphoprotein with a pivotal function in cell cycle regulation. Another binding partner of the EB1-C domain is the well conserved +TIP protein dynactin, a component of the large cytoplasmic dynein/dynactin complex [, , ]. The ~80-residue EB1-C domain starts with a long smoothly curved helix (alpha1), which is followed by a hairpin connection leading to a short second helix (alpha2) running antiparallel to alpha1. The two parallel alpha1 helices of the EB1-C domain dimer wrap around each other in a slightly left-handed supercoil. The two alpha2 helices run antiparallel to helices alpha1 and form a similar fork in the opposite orientation and rotated by 90 degrees. As a result, two helical segments from each monomer form a four-helix bundle. The side chain forming the hydrophobic core of this bundle are highly conserved [, , ]. Some protein known to contain an EB1-C domain are listed below: Yeast protein BIM1. Fission yeast microtubule integrity protein mal3. Vertebrate microtubule-associated protein RP/EB family member 1 (EB1). Vertebrate microtubule-associated protein RP/EB family member 2 (EB2 or RP1). Vertebrate microtubule-associated protein RP/EB family member 3 (EBF3). ; GO: 0008017 microtubule binding; PDB: 3TQ7_B 4E61_B 2HKQ_A 1YIG_B 3GJO_B 2HL5_B 1YIB_A 1WU9_A 1TXQ_B.

>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

Probab=96.38  E-value=0.0043  Score=55.84  Aligned_cols=39  Identities=26%  Similarity=0.445  Sum_probs=36.8

Q ss_pred             CCChHHHHHHHHHHHHHHHhcCccceecccccccccccc
Q psy12626          8 TNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQD   46 (205)
Q Consensus         8 a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qd   46 (205)
                      +-.+++|+.|.+..|..|..++|.-+.|++.|+++++++
T Consensus       174 ta~t~~~Lra~qa~Qe~igSln~~ly~~~~t~~~le~er  212 (342)
T COG5217         174 TAGTHDYLRAMQACQEFIGSLNIKLYFPVDTLVKLEMER  212 (342)
T ss_pred             cchhHHHHHHHHHHHHHhhccceeeeeeccccceeeeHH
Confidence            345799999999999999999999999999999999998

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=93.02  E-value=0.18  Score=37.03  Aligned_cols=52  Identities=15%  Similarity=0.146  Sum_probs=48.2

Q ss_pred             CCChHHHHHHHHHHHHHHHhcCccce-ecccccc-cccccccHHHHHHHHHHHh
Q psy12626          8 TNLEHEYIQNFKILQAAFKKMNVDKI-VPIDKLV-KGRFQDNFEFLQWFKKFFD   59 (205)
Q Consensus         8 a~~e~e~i~N~K~Lq~~F~k~~I~k~-ipV~kLv-kgk~qdnlEflqWfk~f~d   59 (205)
                      +....+.++|.....++.+++||+.. +..+.|+ +|.....+.++.++..+|.
T Consensus        54 ~~~~~~~~~Ni~~~l~~~~~~gi~~~~~~~~Dl~~~~n~~~vl~~l~~l~~~~~  107 (107)
T cd00014          54 PLSRFKRLENINLALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKFL  107 (107)
T ss_pred             ccchhhHHHHHHHHHHHHHHcCCceeccCHHHHhhCCCceeeHHHHHHHHHhhC
Confidence            56788999999999999999999999 9999999 9999999999999998873

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=93.01  E-value=0.14  Score=37.58  Aligned_cols=50  Identities=20%  Similarity=0.403  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHHHHHh-cCccceecccccc-cccccccHHHHHHHHHHHh
Q psy12626         10 LEHEYIQNFKILQAAFKK-MNVDKIVPIDKLV-KGRFQDNFEFLQWFKKFFD   59 (205)
Q Consensus        10 ~e~e~i~N~K~Lq~~F~k-~~I~k~ipV~kLv-kgk~qdnlEflqWfk~f~d   59 (205)
                      ...+.++|..++-++..+ +||+..+..+.|+ .|.....+.|+.+|..+|.
T Consensus        57 ~~~~~~~Ni~~~l~~~~~~lg~~~~~~~~dl~~~~~~~~vl~~l~~l~~~~e  108 (108)
T PF00307_consen   57 SPFDKLENIELALEAAEKKLGIPPLLSPEDLVEKGDEKSVLSFLWQLFRYFE  108 (108)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTSSCTS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence            567999999999999998 9999999999999 9999999999999999983

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A

Probab=86.86  E-value=2  Score=32.08  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626        137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEV  172 (205)
Q Consensus       137 ~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEi  172 (205)
                      ..+.+|.++-.-|---++-+|++||.|+..|+.+--
T Consensus         7 k~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~   42 (84)
T PF11414_consen    7 KRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQE   42 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            357788888888888899999999999999998754

>KOG1899|consensus

Probab=86.25  E-value=1.1  Score=44.66  Aligned_cols=39  Identities=38%  Similarity=0.368  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy12626        140 DELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHE  178 (205)
Q Consensus       140 ~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~  178 (205)
                      -+|++++.+||+...+||||+.=|=.|||+-|-|.|+..
T Consensus       177 lDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn  215 (861)
T KOG1899|consen  177 LDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN  215 (861)
T ss_pred             hHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence            356788999999999999999999999999999999865

>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein

Probab=83.07  E-value=2  Score=42.17  Aligned_cols=41  Identities=22%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy12626        139 VDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG  179 (205)
Q Consensus       139 i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~  179 (205)
                      +.=|+.||+++=.++++|++||+.|=.|||++|..+.....
T Consensus       365 ~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~  405 (557)
T PF01763_consen  365 NKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYRE  405 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999876543

UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
2r8u_A	268	Structure Of Fragment Of Human End-Binding Protein		2e-53
1vka_A	153	Southeast Collaboratory For Structural Genomics: Hy		4e-30
1pa7_A	130	Crystal Structure Of Amino-Terminal Microtubule Bin		4e-29
2qjz_A	123	Structural Basis Of Microtubule Plus End Tracking B		8e-29
1wyo_A	159	Solution Structure Of The Ch Domain Of Human Microt		7e-28
3co1_A	132	Crystal Structure Of Microtubule Binding Domain Of		4e-27
1v5k_A	115	Solution Structure Of The Ch Domain From Mouse Eb-1		2e-24
3tq7_B	82	Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do		4e-19
1yib_A	76	Crystal Structure Of The Human Eb1 C-terminal Dimer		3e-15
1yig_A	76	Crystal Structure Of The Human Eb1 C-Terminal Dimer		3e-15
1txq_B	86	Crystal Structure Of The Eb1 C-Terminal Domain Comp		5e-15
4abo_I	145	Mal3 Ch Domain Homology Model And Mammalian Tubulin		6e-15
3gjo_A	72	Crystal Structure Of Human Eb1 In Complex With Micr		9e-15
1wu9_A	80	Crystal Structure Of The C-Terminal Domain Of The E		9e-15
3tq7_A	78	Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do		1e-14
2qjx_A	127	Structural Basis Of Microtubule Plus End Tracking B		2e-13
3mud_C	75	Structure Of The Tropomyosin Overlap Complex From C		8e-10
3mtu_A	75	Structure Of The Tropomyosin Overlap Complex From C		1e-09
4e61_A	106	Crystal Structure Of The Eb1-Like Motif Of Bim1p Le		5e-04

>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1) Containing The N-Terminal Domain At 1.35 A Resolution Length = 268

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 132/197 (67%), Gaps = 6/197 (3%)
Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117
Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTXXXXXXXXXXXXXXXKSTAAAPRA 120
           N    DYDPV AR G+        S+ A  ++K                  + TAAAP+A
Sbjct: 118 NYDGKDYDPVAARQGQE--TAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKA 175
Query: 121 GLN-SRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG 179
           G    R  P   V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EG
Sbjct: 176 GPGVVRKNPG--VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEG 233
Query: 180 ET-PVIQNILNILYATE 195
           E  PV+Q I++ILYAT+
Sbjct: 234 ENDPVLQRIVDILYATD 250

>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics: Hypothetical Human Protein Q15691 N-Terminal Fragment Length = 153

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 65/76 (85%)
Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 71  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 130
Query: 61  NNTVADYDPVGARGGE 76
           N    DYDPV AR G+
Sbjct: 131 NYDGKDYDPVAARQGQ 146

>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding Domain Of Eb1 Length = 130

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/73 (75%), Positives = 63/73 (86%)
Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117
Query: 61  NNTVADYDPVGAR 73
           N    DYDPV AR
Sbjct: 118 NYDGKDYDPVAAR 130

>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 123

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 64/76 (84%)
Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+  VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 48  LKKVKFQAKLEHEYIQNFKILQAGFKRXGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 107
Query: 61  NNTVADYDPVGARGGE 76
           N    DYDPV AR G+
Sbjct: 108 NYDGKDYDPVAARQGQ 123

>pdb|1WYO|A Chain A, Solution Structure Of The Ch Domain Of Human Microtubule- Associated Protein RpEB FAMILY MEMBER 3 Length = 159

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 65/76 (85%)
Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +++VKF+  LEHEYI NFK+LQAAFKKM VDKI+P++KLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 65  LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDA 124
Query: 61  NNTVADYDPVGARGGE 76
           N    DY+P+ AR G+
Sbjct: 125 NYDGKDYNPLLARQGQ 140

>pdb|3CO1|A Chain A, Crystal Structure Of Microtubule Binding Domain Of Human Eb3 Length = 132

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +++VKF+  LEHEYI NFK+LQAAFKKM VDKI+P++KLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 60  LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDA 119
Query: 61  NNTVADYDPVGAR 73
           N    DY+P+ AR
Sbjct: 120 NYDGKDYNPLLAR 132

>pdb|1V5K|A Chain A, Solution Structure Of The Ch Domain From Mouse Eb-1 Length = 115

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 55/59 (93%)
Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFD 59
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD
Sbjct: 51  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFD 109

>pdb|3TQ7|B Chain B, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 82

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Query: 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-TPVIQNILNILYATE 195
           +++ ELN Q++DLKLTVDGLEKERDFYF KLRDIE++CQEHE E +PVI  I+ ILYATE
Sbjct: 1   AQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATE 60

>pdb|1YIB|A Chain A, Crystal Structure Of The Human Eb1 C-terminal Dimerization Domain Length = 76

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 126 GTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVI 184
           G     V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE  PV+
Sbjct: 1   GPLGSGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVL 60
Query: 185 QNILNILYATE 195
           Q I++ILYAT+
Sbjct: 61  QRIVDILYATD 71

>pdb|1YIG|A Chain A, Crystal Structure Of The Human Eb1 C-Terminal Dimerization Domain Length = 76

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 126 GTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVI 184
           G     V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE  PV+
Sbjct: 1   GPLGSGVGNGDDEAAELXQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVL 60
Query: 185 QNILNILYATE 195
           Q I +ILYAT+
Sbjct: 61  QRIXDILYATD 71

>pdb|1TXQ|B Chain B, Crystal Structure Of The Eb1 C-Terminal Domain Complexed With The Cap-Gly Domain Of P150glued Length = 86

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 132 VDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNI 190
           V N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE  PV+Q I++I
Sbjct: 4   VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDI 63
Query: 191 LYATE 195
           LYAT+
Sbjct: 64  LYATD 68

>pdb|4ABO|I Chain I, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp) Docked Into The 8.6-Angstrom Cryo-Em Map Of Mal3-Gtpgammas-Microtubules Length = 145

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+V F  N E++YI N+K+LQ  F K  +DK+V  ++L + + QDN EF+QW K+F+D 
Sbjct: 48  LKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQ 107
Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISA 88
                DYD +  RG     N  V + SA
Sbjct: 108 YYPGGDYDALARRGNRGPANTRVMNSSA 135

>pdb|3GJO|A Chain A, Crystal Structure Of Human Eb1 In Complex With Microtubule Tip Localization Signal Peptide Of Macf Length = 72

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYAT 194
           S    EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE  PV+Q I++ILYAT
Sbjct: 2   SDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYAT 61
Query: 195 E 195
           +
Sbjct: 62  D 62

>pdb|1WU9|A Chain A, Crystal Structure Of The C-Terminal Domain Of The End- Binding Protein 1 (Eb1) Length = 80

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 136 SSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYAT 194
           S    EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE  PV+Q I++ILYAT
Sbjct: 2   SDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYAT 61
Query: 195 E 195
           +
Sbjct: 62  D 62

>pdb|3TQ7|A Chain A, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 78

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 48/56 (85%), Gaps = 1/56 (1%)
Query: 141 ELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATE 195
           EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE  PV+Q I++ILYAT+
Sbjct: 5   ELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATD 60

>pdb|2QJX|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 127

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 3   RVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNN 62
           RVKF    E+E+  N+KILQ+ F +  ++K V +DKL++ +FQDN EFLQW KK +  + 
Sbjct: 54  RVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIRHK 113
Query: 63  TVADYDPVGAR 73
             + YDP   R
Sbjct: 114 DESVYDPDARR 124

>pdb|3MUD|C Chain C, Structure Of The Tropomyosin Overlap Complex From Chicken Smooth Muscle Length = 75

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 36/40 (90%), Gaps = 1/40 (2%)
Query: 157 EKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATE 195
           E ++DFYFGKLR+IE++CQE+EGE  PV+Q I++ILYAT+
Sbjct: 29  EADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATD 68

>pdb|3MTU|A Chain A, Structure Of The Tropomyosin Overlap Complex From Chicken Smooth Muscle Length = 75

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 36/40 (90%), Gaps = 1/40 (2%)
Query: 157 EKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATE 195
           E ++DFYFGKLR+IE++CQE+EGE  PV+Q I++ILYAT+
Sbjct: 29  EADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATD 68

>pdb|4E61|A Chain A, Crystal Structure Of The Eb1-Like Motif Of Bim1p Length = 106

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 139 VDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQ 175
           +  LN ++   K TV  LE ER+FYF KLRDIE+L  
Sbjct: 20  IGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVH 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
2r8u_A	268	Microtubule-associated protein RP/EB family member	2e-65
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	1e-37
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	1e-36
2qjz_A	123	Microtubule-associated protein RP/EB family member	2e-36
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	3e-36
3tq7_B	82	Microtubule-associated protein RP/EB family membe;	8e-25
3mtu_A	75	Tropomyosin alpha-1 chain, microtubule-associated	3e-24
4e61_A	106	Protein BIM1; EB1-like motif, coiled-coil, spindle	1e-20

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Length = 268

 Score =  201 bits (513), Expect = 2e-65
 Identities = 102/196 (52%), Positives = 127/196 (64%), Gaps = 4/196 (2%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 58  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 117

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISATQIHKRTTPAVAPRPVAPKQPVAKSTAAAPRA 120
           N    DYDPV AR G+           A    K+   + +  P  P      + A     
Sbjct: 118 NYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGP 177

Query: 121 GLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE 180
           G+  +    G   N      EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE
Sbjct: 178 GVVRKNPGVG---NGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGE 234

Query: 181 -TPVIQNILNILYATE 195
             PV+Q I++ILYAT+
Sbjct: 235 NDPVLQRIVDILYATD 250

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Length = 145

 Score =  126 bits (318), Expect = 1e-37
 Identities = 36/89 (40%), Positives = 53/89 (59%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+V F  N E++YI N+K+LQ  F K  +DK+V  ++L + + QDN EF+QW K+F+D 
Sbjct: 48  LKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQ 107

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISAT 89
                DYD +  RG     N  V + SA 
Sbjct: 108 YYPGGDYDALARRGNRGPANTRVMNSSAG 136

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 159

 Score =  124 bits (313), Expect = 1e-36
 Identities = 52/89 (58%), Positives = 66/89 (74%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +++VKF+  LEHEYI NFK+LQAAFKKM VDKI+P++KLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 65  LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDA 124

Query: 61  NNTVADYDPVGARGGEAMGNGSVRSISAT 89
           N    DY+P+ AR G+ +           
Sbjct: 125 NYDGKDYNPLLARQGQDVAPPPNPGDQIF 153

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Length = 123

 Score =  123 bits (309), Expect = 2e-36
 Identities = 56/76 (73%), Positives = 65/76 (85%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 48  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 107

Query: 61  NNTVADYDPVGARGGE 76
           N    DYDPV AR G+
Sbjct: 108 NYDGKDYDPVAARQGQ 123

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Length = 127

 Score =  122 bits (307), Expect = 3e-36
 Identities = 33/76 (43%), Positives = 47/76 (61%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           M RVKF    E+E+  N+KILQ+ F +  ++K V +DKL++ +FQDN EFLQW KK +  
Sbjct: 52  MNRVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIR 111

Query: 61  NNTVADYDPVGARGGE 76
           +   + YDP   R   
Sbjct: 112 HKDESVYDPDARRKYR 127

>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} Length = 82

 Score = 91.9 bits (228), Expect = 8e-25
 Identities = 43/60 (71%), Positives = 52/60 (86%), Gaps = 1/60 (1%)

Query: 137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-TPVIQNILNILYATE 195
           +++ ELN Q++DLKLTVDGLEKERDFYF KLRDIE++CQEHE E +PVI  I+ ILYATE
Sbjct: 1   AQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATE 60

>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C* Length = 75

 Score = 90.0 bits (223), Expect = 3e-24
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 129 AGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-TPVIQNI 187
              +D    ++  L     +     +  E ++DFYFGKLR+IE++CQE+EGE  PV+Q I
Sbjct: 1   GASMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRI 60

Query: 188 LNILYATE 195
           ++ILYAT+
Sbjct: 61  VDILYATD 68

>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae} Length = 106

 Score = 81.9 bits (201), Expect = 1e-20
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 27/103 (26%)

Query: 117 APRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQE 176
            P   L +       +  +   +  LN ++   K TV  LE ER+FYF KLRDIE+L   
Sbjct: 1   GPLGSLVA---IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57

Query: 177 HE------------------------GETPVIQNILNILYATE 195
            +                             ++ + +ILYAT 
Sbjct: 58  TQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYATA 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
2r8u_A	268	Microtubule-associated protein RP/EB family member	100.0
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	100.0
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	100.0
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	100.0
2qjz_A	123	Microtubule-associated protein RP/EB family member	100.0
3tq7_B	82	Microtubule-associated protein RP/EB family membe;	99.93
4e61_A	106	Protein BIM1; EB1-like motif, coiled-coil, spindle	99.91
3mtu_A	75	Tropomyosin alpha-1 chain, microtubule-associated	99.88
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	86.71

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A

Probab=100.00  E-value=5.8e-65  Score=445.14  Aligned_cols=190  Identities=55%  Similarity=0.894  Sum_probs=73.4

Q ss_pred             CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCC
Q psy12626          1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGN   80 (205)
Q Consensus         1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~   80 (205)
                      |+||||+|++||||++||||||++|+|+||+|+|||++|||||||||||||||||+|||+||++.+|||+++|.|+++++
T Consensus        58 l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k~ipV~kLvkgk~qDNlEFlqWfkkf~d~n~~~~~Yd~~~~R~g~~~~~  137 (268)
T 2r8u_A           58 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAV  137 (268)
T ss_dssp             GGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHTC------
T ss_pred             hhhccCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCHHHHhcCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999988754


Q ss_pred             CC-CCCcccccccCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q psy12626         81 GS-VRSISATQIHKRTT---PAVAPRPVAPKQPVAKSTAAAPRAGLNSRGTPAGRVDNNSSRVDELNSQMMDLKLTVDGL  156 (205)
Q Consensus        81 ~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~L~~q~~elk~~v~~L  156 (205)
                      +. ++.++..+ ++++.   ..++.++.++.++.+.     +..++.+ ++.+...+.+..++.+|.+|+++|++++++|
T Consensus       138 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~~el~~lk~~v~~l  210 (268)
T 2r8u_A          138 APSLVAPALNK-PKKPLTSSSAAPQRPISTQRTAAA-----PKAGPGV-VRKNPGVGNGDDEAAELMQQVNVLKLTVEDL  210 (268)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCcccccC-CCCccccccCCCCCCCcccccCCC-----CCCCCCC-CCCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence            32 22221111 22221   1111111010000000     0000000 0000011223456889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCc-hHHHHHHHhhhccccC
Q psy12626        157 EKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATEIF  197 (205)
Q Consensus       157 EkERDFYF~KLRdIEilcQe~~~~~-~~~~~I~~ILYaTee~  197 (205)
                      ||||||||+||||||+|||+.++++ +++++|++|||+|||+
T Consensus       211 EkERDFYF~KLRdIEilcQe~~~~~~~~~~~I~~ILYaTeeg  252 (268)
T 2r8u_A          211 EKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEG  252 (268)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccccC
Confidence            9999999999999999999998876 8999999999999985

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-38  Score=256.19  Aligned_cols=79  Identities=41%  Similarity=0.741  Sum_probs=75.1

Q ss_pred             CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCC
Q psy12626          1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMG   79 (205)
Q Consensus         1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~   79 (205)
                      |+||||+|+.||||++||||||++|+|+||+|+|||++|||||||||||||||||+|||+||++.+|||+++|+|++++
T Consensus        48 l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k~ipV~kLvKgk~QDNlEFlQWfkkf~d~n~~~~~YD~~~~R~g~~~~  126 (145)
T 4abo_I           48 LKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPGGDYDALARRGNRGPA  126 (145)
T ss_dssp             TTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCSSCCCHHHHHTCC---
T ss_pred             hhhcccCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccchHhHHHHHHHHHHHHHhcCCCCCCCHHHhcCCCCcc
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999988763

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-37  Score=242.17  Aligned_cols=76  Identities=43%  Similarity=0.739  Sum_probs=74.4

Q ss_pred             CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCC
Q psy12626          1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGE   76 (205)
Q Consensus         1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~   76 (205)
                      |+||||+|++||||++|||+||++|+|++|+|+|||++|||||||||||||||||+|||+||++++|||+++|+++
T Consensus        52 l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~k~ipV~kLvKgrfQDNlEFlQWfkkf~d~n~~g~~YDa~~~R~~~  127 (127)
T 2qjx_A           52 MNRVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIRHKDESVYDPDARRKYR  127 (127)
T ss_dssp             GGGSCTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCSSCCCHHHHTTTC
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHhcCCCCCCCHHHhhccC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999864

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=3.1e-35  Score=240.33  Aligned_cols=80  Identities=65%  Similarity=1.156  Sum_probs=77.7

Q ss_pred             CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCC
Q psy12626          1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGEAMGN   80 (205)
Q Consensus         1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~   80 (205)
                      |+||||+++.||||++|||+||++|+|+||+|+|||++|||||||||||||||||+|||+|+++.+|||+++|.|+++++
T Consensus        65 l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~~~Yd~~~~R~~~~~~~  144 (159)
T 1wyo_A           65 LRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAP  144 (159)
T ss_dssp             TTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCSCCCCTTGGGCCCTTSC
T ss_pred             HhhhccCCCChHHHHHHHHHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999988754

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=100.00  E-value=6.1e-35  Score=229.90  Aligned_cols=76  Identities=74%  Similarity=1.259  Sum_probs=74.3

Q ss_pred             CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCCC
Q psy12626          1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGGE   76 (205)
Q Consensus         1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~~   76 (205)
                      |+||||+++.||||++|||+||++|+|+||+|+|||++|||||||||||||||||+|||+|+++++|||++||.|+
T Consensus        48 l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k~i~v~kLvkgk~qdnleflqW~k~f~d~n~~~~~Yd~~~~R~~~  123 (123)
T 2qjz_A           48 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQ  123 (123)
T ss_dssp             GGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHTSCC
T ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHHcCCCCccCHHHHHcCCchhHHHHHHHHHHHHHHcCCCCCCCHHHhhCcC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999874

>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1

Probab=99.93  E-value=9.4e-27  Score=171.32  Aligned_cols=60  Identities=72%  Similarity=1.100  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc-hHHHHHHHhhhccccC
Q psy12626        138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATEIF  197 (205)
Q Consensus       138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~~-~~~~~I~~ILYaTee~  197 (205)
                      ++.+|++++++|++++++||+||||||+|||+||+|||+.+..+ +++++|++|||||+|+
T Consensus         2 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ILYaTeeg   62 (82)
T 3tq7_B            2 QILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEG   62 (82)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHTCCC--
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccccC
Confidence            57789999999999999999999999999999999999998766 8999999999999875

>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.1e-25  Score=168.22  Aligned_cols=64  Identities=38%  Similarity=0.580  Sum_probs=57.1

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--------------------C---c-hHHHHHHH
Q psy12626        134 NNSSRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEG--------------------E---T-PVIQNILN  189 (205)
Q Consensus       134 ~~~~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~--------------------~---~-~~~~~I~~  189 (205)
                      ..++++.+|++++++|++++++||+||||||+||||||+|||+..+                    .   . +++++|++
T Consensus        15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~   94 (106)
T 4e61_A           15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVES   94 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHH
Confidence            4467899999999999999999999999999999999999999743                    1   1 78999999


Q ss_pred             hhhccccC
Q psy12626        190 ILYATEIF  197 (205)
Q Consensus       190 ILYaTee~  197 (205)
                      |||||||+
T Consensus        95 ILYaTeeG  102 (106)
T 4e61_A           95 ILYATAEG  102 (106)
T ss_dssp             HHHHHHHT
T ss_pred             HHhccccc
Confidence            99999874

>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*

Probab=99.88  E-value=7.1e-23  Score=148.45  Aligned_cols=61  Identities=44%  Similarity=0.755  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc-hHHHHHHHhhhccccCc
Q psy12626        138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYATEIFT  198 (205)
Q Consensus       138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~~-~~~~~I~~ILYaTee~~  198 (205)
                      .+..|+.+..++..++++||+||||||+|||+||+|||+.+++. +++++|++|||+|+|+-
T Consensus        10 kmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~~~f   71 (75)
T 3mtu_A           10 KMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGF   71 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHHHHCBTTBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCcCC
Confidence            56678889999999999999999999999999999999998766 99999999999998853

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=86.71  E-value=1.2  Score=32.14  Aligned_cols=33  Identities=36%  Similarity=0.547  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12626        138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDI  170 (205)
Q Consensus       138 ~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdI  170 (205)
                      ..+.|-+++.+|+..|+.||.||--|=-||+.=
T Consensus        20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsT   52 (81)
T 3qh9_A           20 KAEELLQELRHLKIKVEELENERNQYEWKLKAT   52 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            466899999999999999999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d2qjza1	120	a.40.1.1 (A:13-132) Microtubule-associated protein	5e-40
d1wu9a1	59	a.245.1.1 (A:191-249) Microtubule-associated prote	1e-25

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (329), Expect = 5e-40
 Identities = 56/75 (74%), Positives = 64/75 (85%)

Query: 1   MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDV 60
           +K+VKF+  LEHEYIQNFKILQA FK+M VDKI+P+DKLVKG+FQDNFEF+QWFKKFFD 
Sbjct: 46  LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 105

Query: 61  NNTVADYDPVGARGG 75
           N    DYDPV AR G
Sbjct: 106 NYDGKDYDPVAARQG 120

>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: EB1 dimerisation domain-like
superfamily: EB1 dimerisation domain-like
family: EB1 dimerisation domain-like
domain: Microtubule-associated protein EB1, C-terminal dimerization domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.1 bits (229), Expect = 1e-25
 Identities = 38/58 (65%), Positives = 47/58 (81%), Gaps = 1/58 (1%)

Query: 138 RVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGE-TPVIQNILNILYAT 194
              EL  Q+  LKLTV+ LEKERDFYFGKLR+IE++CQE+EGE  PV+Q I++ILYAT
Sbjct: 2   EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYAT 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d2qjza1	120	Microtubule-associated protein eb1, N-terminal mic	100.0
d1wu9a1	59	Microtubule-associated protein EB1, C-terminal dim	99.95
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	89.77

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=231.20  Aligned_cols=75  Identities=75%  Similarity=1.268  Sum_probs=73.9

Q ss_pred             CccccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHHhhcCCCCCCCcccccCC
Q psy12626          1 MKRVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDVNNTVADYDPVGARGG   75 (205)
Q Consensus         1 l~kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~d~n~~~~~Yd~~~~R~~   75 (205)
                      |+||||+|+.||||++||||||+||+|+||+|+|||++|||||||||||||||||+|||+|+++++|||.++|.|
T Consensus        46 l~kVkf~a~~e~e~~~N~klLq~af~kl~I~k~i~v~kLikgk~qdnleflqWfk~f~d~n~~~~~Yda~~~R~G  120 (120)
T d2qjza1          46 LKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQG  120 (120)
T ss_dssp             GGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHTSC
T ss_pred             HhhhccCCCCHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhcccchhHHHHHHHHHHHHHhcCCCCCCCHHhhhCc
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999986

>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EB1 dimerisation domain-like
superfamily: EB1 dimerisation domain-like
family: EB1 dimerisation domain-like
domain: Microtubule-associated protein EB1, C-terminal dimerization domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.9e-29  Score=170.88  Aligned_cols=58  Identities=66%  Similarity=1.049  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc-hHHHHHHHhhhcc
Q psy12626        137 SRVDELNSQMMDLKLTVDGLEKERDFYFGKLRDIEVLCQEHEGET-PVIQNILNILYAT  194 (205)
Q Consensus       137 ~~i~~L~~q~~elk~~v~~LEkERDFYF~KLRdIEilcQe~~~~~-~~~~~I~~ILYaT  194 (205)
                      +++.+|++|+.+|+.++++||+||||||+||||||+|||++++++ +++++|++|||||
T Consensus         1 ee~~~L~~ei~elk~~v~~lEkERdFYF~KLRdIEilcQ~~e~~~~~~~~~I~~ILYaT   59 (59)
T d1wu9a1           1 DEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYAT   59 (59)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccCchHHHHHHHHHccC
Confidence            378999999999999999999999999999999999999998776 9999999999998

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.2  Score=36.12  Aligned_cols=56  Identities=13%  Similarity=-0.013  Sum_probs=49.1

Q ss_pred             cccccCCChHHHHHHHHHHHHHHHhcCccceecccccccccccccHHHHHHHHHHH
Q psy12626          3 RVKFRTNLEHEYIQNFKILQAAFKKMNVDKIVPIDKLVKGRFQDNFEFLQWFKKFF   58 (205)
Q Consensus         3 kVkf~a~~e~e~i~N~K~Lq~~F~k~~I~k~ipV~kLvkgk~qdnlEflqWfk~f~   58 (205)
                      +|+-......+.++|.+..-++.+++||...|..+.++.|+..-.|-|+-.+-.++
T Consensus        59 ~~~~~~~~~~~~~~N~~~al~~~~~lgi~~~i~~eDI~~gn~k~iL~~i~~L~~~~  114 (124)
T d1wjoa_          59 LVKSGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRG  114 (124)
T ss_dssp             TSCCSSCCHHHHHHHHHHHHHHHHHTCCSCCCCHHHHHHTCTTTTTHHHHHHHHHS
T ss_pred             hcccCCccHhhHHHHHHHHHHHHHHhCCcccCCHHHccCCCchHHHHHHHHHHHHH
Confidence            44555678899999999999999999999999999999999999999998876653