Psyllid ID: psy12642

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MAPIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEHEEHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAPIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEElflhhphnhllHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Flexible Loop (DISEMBL)
MAPIVYIIGCFHFFRYEEALEHLETIIkidetntaarkRKICilkaknkipeAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYeeqqgnteTLTELMSALQVS
Low Complexity Region (SEG)
MAPIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEElflhhphnhllhQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Disordered region (IsUnstruct)
***IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA*******QMMWVS***************************
Disordered Region (DISOPRED)
*APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL**************KQMMWVSKHLARQ************ELMSALQV*
Disordered Region (DISEMBL)
MAPIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Disordered Region (DISPRO)
MAPIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q6TGY8	297	ER membrane protein compl	yes	N/A	0.930	0.629	0.463	3e-47
Q9CRD2	297	ER membrane protein compl	yes	N/A	0.835	0.565	0.5	4e-45
Q5R882	297	ER membrane protein compl	yes	N/A	0.835	0.565	0.5	4e-45
Q15006	297	ER membrane protein compl	yes	N/A	0.835	0.565	0.5	4e-45
B0BNG0	297	ER membrane protein compl	yes	N/A	0.930	0.629	0.443	6e-45
Q6INS3	297	ER membrane protein compl	N/A	N/A	0.930	0.629	0.438	3e-44
Q5M7J9	297	ER membrane protein compl	yes	N/A	0.930	0.629	0.438	3e-44
Q5E993	297	ER membrane protein compl	yes	N/A	0.835	0.565	0.488	6e-44
Q8AVU9	297	ER membrane protein compl	N/A	N/A	0.930	0.629	0.427	3e-43
Q86K48	322	ER membrane protein compl	yes	N/A	0.671	0.419	0.321	2e-17

>sp|Q6TGY8|EMC2_DANRE ER membrane protein complex subunit 2 OS=Danio rerio GN=emc2 PE=2 SV=1

 Score =  187 bits (476), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 136/194 (70%), Gaps = 7/194 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY++A +  ++I++ D TNTAARKRKICIL+A+ K  EAI+EL EYL++F+ DQE W EL
Sbjct: 102 RYDDANKLYDSILQDDPTNTAARKRKICILRAQGKSSEAIRELNEYLEQFVGDQEAWHEL 161

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E DYAKA FC+EEL + +PHNHL  ++YA++ YTQGGLEN+ELA  ++  A+ L
Sbjct: 162 SELYINEHDYAKAAFCLEELMMTNPHNHLYCEQYAEVKYTQGGLENLELARKYFAQALKL 221

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
           N +N+RAL+GL +S   +  S K SA  KK+  K   W +  ++R Y+       E + +
Sbjct: 222 NNRNMRALFGLYMSASHIAASPKVSAKVKKDNVKYAAWAAAQISRAYQMAGRGKKENKCS 281

Query: 188 TETLTELMSALQVS 201
            + + E++ +LQ++
Sbjct: 282 VKAVEEMLESLQIT 295

Danio rerio (taxid: 7955)

>sp|Q9CRD2|EMC2_MOUSE ER membrane protein complex subunit 2 OS=Mus musculus GN=Emc2 PE=2 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 121/168 (72%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct: 102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKTVEAIRELNEYLEQFVGDQEAWHEL 161

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E DYAKA FC+EEL + +PHNHL  Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct: 162 AELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE 182
           N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + R Y+
Sbjct: 222 NNRNMRALFGLYMSASHIASNPKASAKMKKDNIKYASWAANQINRAYQ 269

Mus musculus (taxid: 10090)

>sp|Q5R882|EMC2_PONAB ER membrane protein complex subunit 2 OS=Pongo abelii GN=EMC2 PE=2 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 121/168 (72%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct: 102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHEL 161

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E DYAKA FC+EEL + +PHNHL  Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct: 162 AELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE 182
           N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + R Y+
Sbjct: 222 NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINRAYQ 269

Pongo abelii (taxid: 9601)

>sp|Q15006|EMC2_HUMAN ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1 SV=1

 Score =  180 bits (457), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 121/168 (72%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct: 102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHEL 161

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E DYAKA FC+EEL + +PHNHL  Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct: 162 AELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE 182
           N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + R Y+
Sbjct: 222 NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINRAYQ 269

Homo sapiens (taxid: 9606)

>sp|B0BNG0|EMC2_RAT ER membrane protein complex subunit 2 OS=Rattus norvegicus GN=Emc2 PE=2 SV=1

 Score =  180 bits (456), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 133/194 (68%), Gaps = 7/194 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct: 102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHEL 161

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E DYAKA FC+EEL + +PHNHL  Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct: 162 AELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
           N +N+RAL+GL +S   + ++ K SA  KK+  +   W +  + R Y+       E + +
Sbjct: 222 NNRNMRALFGLYMSASHIASNPKASAKMKKDNIRYAGWAANQINRAYQFAGRSKKETKSS 281

Query: 188 TETLTELMSALQVS 201
            + + +++  LQ++
Sbjct: 282 LKAVEDMLETLQIT 295

Rattus norvegicus (taxid: 10116)

>sp|Q6INS3|EMC2A_XENLA ER membrane protein complex subunit 2-A OS=Xenopus laevis GN=emc2-a PE=2 SV=1

 Score =  177 bits (450), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 132/194 (68%), Gaps = 7/194 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY++AL+  + I++ D TNTAARKRKI I KA+ +  EAI+EL EYL++F+ DQE W EL
Sbjct: 102 RYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNSEAIRELNEYLEQFVGDQEAWHEL 161

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E DYAKA FC+EEL L +PHNH  +Q++A++ YTQGGLEN+EL+  ++  A+ L
Sbjct: 162 AELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKL 221

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
           N  N+RAL+GL +S   + ++ K SA  KK+  K   W +  + + Y+       + Q +
Sbjct: 222 NNHNMRALFGLYISSVHIASNPKASAKMKKDNVKYATWAASQIKKAYQLAGRTMTDTQTS 281

Query: 188 TETLTELMSALQVS 201
            + + +++  LQ++
Sbjct: 282 LKAVEDMLETLQIT 295

Xenopus laevis (taxid: 8355)

>sp|Q5M7J9|EMC2_XENTR ER membrane protein complex subunit 2 OS=Xenopus tropicalis GN=emc2 PE=2 SV=1

 Score =  177 bits (450), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 132/194 (68%), Gaps = 7/194 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY++AL+  + I++ D TNTAARKRKI I KA+ +  EAI+EL EYL++F+ DQE W EL
Sbjct: 102 RYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNAEAIRELNEYLEQFVGDQEAWHEL 161

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E DYAKA FC+EEL L +PHNH  +Q++A++ YTQGGLEN+EL+  ++  A+ L
Sbjct: 162 AELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKL 221

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
           N  N+RAL+GL +S   + ++ K SA  KK+  K   W +  + + Y+       + Q +
Sbjct: 222 NNHNMRALFGLYISSVHIASNPKASAKMKKDNVKYATWATSQIKKAYQLAGRTMTDTQTS 281

Query: 188 TETLTELMSALQVS 201
            + + +++  LQ++
Sbjct: 282 LKAVEDMLETLQIT 295

Xenopus tropicalis (taxid: 8364)

>sp|Q5E993|EMC2_BOVIN ER membrane protein complex subunit 2 OS=Bos taurus GN=EMC2 PE=2 SV=1

 Score =  177 bits (448), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 121/168 (72%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct: 102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHEL 161

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E DYAKA FC+EEL + +P+NHL  Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct: 162 AELYINEHDYAKAAFCLEELMMTNPYNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE 182
           N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + + Y+
Sbjct: 222 NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINKAYQ 269

Bos taurus (taxid: 9913)

>sp|Q8AVU9|EMC2B_XENLA ER membrane protein complex subunit 2-B OS=Xenopus laevis GN=emc2-b PE=2 SV=1

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 131/194 (67%), Gaps = 7/194 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY++AL+  + I++ D TNTA RKRKI I KA+ +  EAI+EL EYL++F+ DQE W EL
Sbjct: 102 RYDDALQIYDRILQDDPTNTATRKRKIAIRKAQGRNAEAIRELNEYLEQFVGDQEAWHEL 161

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E DYAKA FC+EEL L +PHNH  +Q++A++ YTQGGLEN+EL+  ++  A+ L
Sbjct: 162 AELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKL 221

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
           N  ++RAL+GL +S   + ++ K SA  KK+  K   W +  + + Y+       + Q +
Sbjct: 222 NNHSMRALFGLYMSSVHIASNPKASAKMKKDNVKYATWATSQIKKAYQLAGRTMTDTQTS 281

Query: 188 TETLTELMSALQVS 201
            + + +++  LQ++
Sbjct: 282 LKAVEDMLETLQIT 295

Xenopus laevis (taxid: 8355)

>sp|Q86K48|EMC2_DICDI ER membrane protein complex subunit 2 OS=Dictyostelium discoideum GN=emc2 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 11/146 (7%)

Query: 18  EALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL 77
           EAL+  E+I+K   ++  + KR++ I K +  + +AI+ L  YL+ +M D E W EL   
Sbjct: 126 EALQIFESILKKYPSDALSMKRQVAIFKGQGNLSKAIQVLNAYLQIYMCDLEAWLELSSF 185

Query: 78  YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
           ++S   Y+ A++C+EE+ L+ P N + + +YA+ LY  GG EN   A+ +Y  A+ LN  
Sbjct: 186 HISYLSYSTALYCLEEVLLNAPINFVFYIKYAEPLYCLGGNENYNSAVQYYTHALELNSP 245

Query: 138 N-----------IRALYGLALSCHQV 152
                       + A+YG+ +S + +
Sbjct: 246 TEMDKLDHPPTFLPAIYGIIMSIYSL 271

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
307199386	1367	Tetratricopeptide repeat protein 35-B [H	0.920	0.135	0.577	2e-57
307177773	289	Tetratricopeptide repeat protein 35-B [C	0.920	0.640	0.572	5e-57
332019332	289	Tetratricopeptide repeat protein 35-B [A	0.920	0.640	0.556	7e-56
156550299	291	PREDICTED: tetratricopeptide repeat prot	0.920	0.635	0.571	2e-55
91077750	278	PREDICTED: similar to CG17556 CG17556-PA	0.920	0.665	0.577	2e-55
48102403	289	PREDICTED: tetratricopeptide repeat prot	0.840	0.584	0.609	2e-55
350412349	289	PREDICTED: tetratricopeptide repeat prot	0.880	0.612	0.587	1e-54
383856587	295	PREDICTED: tetratricopeptide repeat prot	0.920	0.627	0.566	9e-54
340709374	289	PREDICTED: tetratricopeptide repeat prot	0.880	0.612	0.576	3e-53
289724664	247	uncharacterized conserved protein [Gloss	0.786	0.639	0.610	2e-50

>gi|307199386|gb|EFN80011.1| Tetratricopeptide repeat protein 35-B [Harpegnathos saltator]

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/187 (57%), Positives = 144/187 (77%), Gaps = 2/187 (1%)

Query: 16   YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
            Y+EA+E L++IIK DETN A RKR++ ILKA+ +IPEAIKELTEYLK+FM+DQE W ELC
Sbjct: 1179 YDEAMEVLDSIIKRDETNAAPRKRRVAILKARGRIPEAIKELTEYLKRFMSDQEAWHELC 1238

Query: 76   DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
            DLYL E +Y+KA +CMEEL LH+PH+HL++QRYA+I Y+QGG +N+ELA +++  A+ LN
Sbjct: 1239 DLYLQEQEYSKAAYCMEELILHNPHSHLIYQRYAEIKYSQGGFDNMELAKAYFSQAVKLN 1298

Query: 136  EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGN--TETLTE 193
              NIRALYGL L+ + + TSAKC A+KKKE  K   W SK + +QYE +  N   +T+  
Sbjct: 1299 PNNIRALYGLLLTTNNIATSAKCPASKKKEAIKLSEWASKQIEKQYESKVSNEDVKTVER 1358

Query: 194  LMSALQV 200
            L+  LQ+
Sbjct: 1359 LLGQLQL 1365

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177773|gb|EFN66770.1| Tetratricopeptide repeat protein 35-B [Camponotus floridanus]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 141/187 (75%), Gaps = 2/187 (1%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
           Y+EA+E LE+IIK DETN A RKR++ ILKA+ +IPEAIKELTEYLK+FM+DQE W ELC
Sbjct: 101 YDEAMEVLESIIKRDETNAAPRKRRVAILKARGRIPEAIKELTEYLKRFMSDQEAWHELC 160

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
           DLYL E +Y+KA +CMEEL LH+PH+HL++QRYA+I Y+QGG +N+ELA +++  A  LN
Sbjct: 161 DLYLQEQEYSKAAYCMEELILHNPHSHLIYQRYAEIKYSQGGFDNMELAKAYFCQAAKLN 220

Query: 136 EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTE--TLTE 193
             NIRALYGL L+ + + TS KC A+KKKE  K   W SK + +QYE +  N +   +  
Sbjct: 221 PNNIRALYGLLLTTNNIATSPKCPASKKKEAVKLSEWASKQIEKQYESKVSNEDVKNIER 280

Query: 194 LMSALQV 200
           L+  LQ+
Sbjct: 281 LLGQLQL 287

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019332|gb|EGI59838.1| Tetratricopeptide repeat protein 35-B [Acromyrmex echinatior]

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 141/187 (75%), Gaps = 2/187 (1%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
           Y+EA+E L++IIK DETN A RKR++ ILKA+ +IPEAIKELTEYLK+FM+DQE W ELC
Sbjct: 101 YDEAMEVLDSIIKRDETNAAPRKRRVAILKARGRIPEAIKELTEYLKRFMSDQEAWHELC 160

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
           DLYL E +Y+KA +CMEEL LH+PH+HL++QRYA+I Y+QGG +N+ELA +++  A  LN
Sbjct: 161 DLYLQEQEYSKAAYCMEELILHNPHSHLIYQRYAEIKYSQGGFDNMELAKAYFCQAAKLN 220

Query: 136 EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTE--TLTE 193
             NIRALYGL L+ + + TS KC ++KKKE  K   W S+ + +QYE +  N +   +  
Sbjct: 221 PNNIRALYGLLLTTNNIATSPKCPSSKKKEAMKLSEWASRQIEKQYESKVTNEDVKNVER 280

Query: 194 LMSALQV 200
           L+  LQ+
Sbjct: 281 LLGQLQL 287

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550299|ref|XP_001603293.1| PREDICTED: tetratricopeptide repeat protein 35-A-like [Nasonia vitripennis]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 141/189 (74%), Gaps = 4/189 (2%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
           Y+EALE L++IIK DETN A RKR++ ILKA+ +IPEAIKELTEYLKKFM+DQE W ELC
Sbjct: 101 YDEALEVLDSIIKRDETNAAPRKRRVAILKARGQIPEAIKELTEYLKKFMSDQEGWHELC 160

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
           DLYL E +Y+KA  C+EEL LH+PHNHLLHQRYA+I Y+QGG +N+  A +++  AI LN
Sbjct: 161 DLYLQEQEYSKAAICIEELILHNPHNHLLHQRYAEIKYSQGGYDNMVTAKAYFSQAIKLN 220

Query: 136 EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE----EQQGNTETL 191
             NIRALYGL L+ + +  S KC A+KKKE  K   WV+  + RQY+    E+  +T+ +
Sbjct: 221 PNNIRALYGLLLTANNIALSPKCPASKKKETIKLSEWVANQIERQYKTKTAEENKDTKCI 280

Query: 192 TELMSALQV 200
             L++ LQ+
Sbjct: 281 EGLLAQLQL 289

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077750|ref|XP_966972.1| PREDICTED: similar to CG17556 CG17556-PA [Tribolium castaneum] gi|270002222|gb|EEZ98669.1| hypothetical protein TcasGA2_TC001201 [Tribolium castaneum]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 138/187 (73%), Gaps = 2/187 (1%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           +YE+A++ L+ IIK+DETN+ A+KRKI ILKA+ K  EAIKEL +YLK FM D E WQEL
Sbjct: 94  KYEDAIKILDDIIKVDETNSGAKKRKIAILKAQGKTVEAIKELADYLKIFMADGEAWQEL 153

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +LY++E D+ KA FC+EEL LH+PHNHLLHQRYADI YTQGGLENIELA S+Y  AI L
Sbjct: 154 SELYITEQDFQKAAFCVEELILHNPHNHLLHQRYADIKYTQGGLENIELARSYYCQAIKL 213

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTEL 194
           N KN+RALYGL ++   + TSAKCS+ KKKE  K   W    +  QY  +  N + + + 
Sbjct: 214 NPKNVRALYGLYIATTAIATSAKCSSQKKKEAQKLSEWALNEIQNQY--KHSNIDDIEDR 271

Query: 195 MSALQVS 201
           + ALQ++
Sbjct: 272 LGALQIN 278

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48102403|ref|XP_395349.1| PREDICTED: tetratricopeptide repeat protein 35-B-like [Apis mellifera]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 132/169 (78%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
           Y+EALE L++IIK DETN A RKR+I ILKAK +IPEAIKELTEYLKKFM+DQE W ELC
Sbjct: 101 YDEALEVLDSIIKRDETNAAPRKRRIAILKAKGRIPEAIKELTEYLKKFMSDQEAWHELC 160

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
           DLYL E +Y+KA FCMEEL LH+PH+HL++QRYA+I Y+QGG EN+ELA +++  A  LN
Sbjct: 161 DLYLQEQEYSKAAFCMEELILHNPHSHLIYQRYAEIKYSQGGFENMELAKAYFCQAARLN 220

Query: 136 EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQ 184
             NIRALYGL L+ + + TS KC ++KKK+  K   W +  + +QY+ +
Sbjct: 221 PNNIRALYGLLLASNNIATSPKCPSSKKKDAIKLSEWAANQIEKQYQSK 269

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412349|ref|XP_003489615.1| PREDICTED: tetratricopeptide repeat protein 35-B-like [Bombus impatiens]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 133/177 (75%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
           Y+EALE L++IIK DETN A RKR+I ILKAK +I EAIKELTEYLKKFM+DQE W ELC
Sbjct: 101 YDEALEVLDSIIKRDETNAAPRKRRIAILKAKGRISEAIKELTEYLKKFMSDQEAWHELC 160

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
           DLYL E +Y+KA FCMEEL LH+PH+HL++QRYA+I Y+QGG EN+ELA +++  A  LN
Sbjct: 161 DLYLQEQEYSKAAFCMEELILHNPHSHLIYQRYAEIKYSQGGFENMELAKAYFCQAARLN 220

Query: 136 EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLT 192
             NIRALYGL L+ + + TS KC ++KKK+  K   W +  + +QYE +  +    T
Sbjct: 221 PNNIRALYGLLLATNNIATSPKCPSSKKKDAIKLSEWAANQIEKQYESKVSDENIKT 277

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856587|ref|XP_003703789.1| PREDICTED: tetratricopeptide repeat protein 35-B-like [Megachile rotundata]

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 106/187 (56%), Positives = 137/187 (73%), Gaps = 2/187 (1%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
           Y EALE L++IIK DETN A RKR I ILKAK +IPEAIKELTEYLKKFM+DQE W ELC
Sbjct: 107 YNEALEVLDSIIKRDETNAAPRKRYIAILKAKCRIPEAIKELTEYLKKFMSDQEAWHELC 166

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
           DLYL E +Y+KA FCMEEL LH+PH+HL++QRYA+I Y+QGG EN+ELA +++  A  LN
Sbjct: 167 DLYLQEQEYSKAAFCMEELILHNPHSHLIYQRYAEIKYSQGGFENMELAKAYFCQAAKLN 226

Query: 136 EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNT--ETLTE 193
             NIRALYGL L+ + + TS KC ++KKK+  K   W +  +  QY+ +  +   + +  
Sbjct: 227 PNNIRALYGLLLASNNIATSPKCPSSKKKDAIKLSEWAANQIEEQYKSKVSDDHIDAVEG 286

Query: 194 LMSALQV 200
           L+  LQ+
Sbjct: 287 LLGQLQL 293

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709374|ref|XP_003393285.1| PREDICTED: tetratricopeptide repeat protein 35-like [Bombus terrestris]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 102/177 (57%), Positives = 131/177 (74%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
           Y+EALE L++IIK DETN A RKR+I ILKAK +I EAIKELTEYLKKFM+DQE W ELC
Sbjct: 101 YDEALEVLDSIIKRDETNAAPRKRRIAILKAKGRISEAIKELTEYLKKFMSDQEAWHELC 160

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
           DLYL E +Y+KA FCMEEL LH+PH+HL++QRYA+I Y+QGG EN+ELA +++  A+ LN
Sbjct: 161 DLYLQEQEYSKAAFCMEELILHNPHSHLIYQRYAEIKYSQGGFENMELAKAYFCQAVRLN 220

Query: 136 EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLT 192
             NIRALYGL L+ + +  S KC ++KKK+  K   W +  + + Y  +  N    T
Sbjct: 221 PNNIRALYGLLLATNNIAASPKCPSSKKKDAIKLCEWAAIQIEKHYGSKVSNESIKT 277

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289724664|gb|ADD18306.1| uncharacterized conserved protein [Glossina morsitans morsitans]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 118/159 (74%), Gaps = 1/159 (0%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           RY +ALE L+ II  DETN A RKRK+ ILKAK +  EAIKEL EYLKKFM+DQE WQEL
Sbjct: 54  RYNDALEVLDAIIAKDETNAAPRKRKVAILKAKGRRIEAIKELNEYLKKFMSDQEAWQEL 113

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
           C+LYL+EGDYAKA FCMEE+ LH+PH+HL+HQR A+I YT GG++NIELA +++  AI L
Sbjct: 114 CNLYLAEGDYAKAAFCMEEVLLHNPHSHLIHQRLAEIRYTMGGMDNIELARTYFSQAIKL 173

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWV 173
           N KN+RALYG  L C  +  S +    K+KE  K   W 
Sbjct: 174 NPKNLRALYGFYLCCTMIANS-RAVGTKRKEAQKMAQWA 211

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
ZFIN|ZDB-GENE-040625-82	297	emc2 "ER membrane protein comp	0.930	0.629	0.432	2.6e-40
FB|FBgn0038461	282	CG3678 [Drosophila melanogaste	0.805	0.574	0.509	2.9e-39
FB|FBgn0038462	282	CG17556 [Drosophila melanogast	0.805	0.574	0.509	6.1e-39
UNIPROTKB|F1S1G1	297	EMC2 "Uncharacterized protein"	0.930	0.629	0.422	7.8e-39
MGI|MGI:1913986	297	Emc2 "ER membrane protein comp	0.930	0.629	0.417	9.9e-39
UNIPROTKB|Q15006	297	EMC2 "ER membrane protein comp	0.930	0.629	0.417	1.3e-38
UNIPROTKB|Q5R882	297	EMC2 "ER membrane protein comp	0.930	0.629	0.417	1.3e-38
UNIPROTKB|E1BRW7	297	TTC35 "Uncharacterized protein	0.930	0.629	0.417	1.6e-38
UNIPROTKB|Q5E993	297	EMC2 "ER membrane protein comp	0.930	0.629	0.412	2.6e-38
RGD|1310430	297	Emc2 "ER membrane protein comp	0.930	0.629	0.412	2.6e-38

ZFIN|ZDB-GENE-040625-82 emc2 "ER membrane protein complex subunit 2" [Danio rerio (taxid:7955)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 84/194 (43%), Positives = 128/194 (65%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             RY++A +  ++I++ D TNTAARKRKICIL+A+ K  EAI+EL EYL++F+ DQE W EL
Sbjct:   102 RYDDANKLYDSILQDDPTNTAARKRKICILRAQGKSSEAIRELNEYLEQFVGDQEAWHEL 161

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
              +LY++E DYAKA FC+EE            ++YA++ YTQGGLEN+ELA  ++  A+ L
Sbjct:   162 SELYINEHDYAKAAFCLEELMMTNPHNHLYCEQYAEVKYTQGGLENLELARKYFAQALKL 221

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
             N +N+RAL+GL +S   +  S K SA  KK+  K   W +  ++R Y+       E + +
Sbjct:   222 NNRNMRALFGLYMSASHIAASPKVSAKVKKDNVKYAAWAAAQISRAYQMAGRGKKENKCS 281

Query:   188 TETLTELMSALQVS 201
              + + E++ +LQ++
Sbjct:   282 VKAVEEMLESLQIT 295

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0038461 CG3678 [Drosophila melanogaster (taxid:7227)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 83/163 (50%), Positives = 111/163 (68%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +Y+EA E L+ II  DETN A RKRKI ILKA+ +  EAIKEL EYLKKFM+DQE W EL
Sbjct:   100 QYDEADEVLDAIIAKDETNAAPRKRKIAILKARGRRLEAIKELNEYLKKFMSDQEAWHEL 159

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
             C++YL+EG++ KA FCMEE            QR A+I YT GG+EN+E A ++Y  A+ L
Sbjct:   160 CNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTMGGVENMESARTYYSQALKL 219

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHL 177
             N  N+RALYG+ L C+  L +++  ++K+KE+ K   W  + L
Sbjct:   220 NPHNLRALYGIYLCCNH-LDNSRAVSSKRKELQKLSQWALEQL 261

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005875 "microtubule associated complex" evidence=IDA

FB|FBgn0038462 CG17556 [Drosophila melanogaster (taxid:7227)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 83/163 (50%), Positives = 110/163 (67%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +Y+EA E L+ II  DETN A RKRKI ILKA+    EAIKEL EYLKKFM+DQE W EL
Sbjct:   100 QYDEADEVLDAIIAKDETNAAPRKRKIAILKARGHRLEAIKELNEYLKKFMSDQEAWHEL 159

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
             C++YL+EG++ KA FCMEE            QR A+I YT GG+EN+E A ++Y  A+ L
Sbjct:   160 CNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTMGGVENMESARTYYSQALKL 219

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHL 177
             N  N+RALYG+ L C+  L +++  ++K+KE+ K   W  + L
Sbjct:   220 NPHNLRALYGIYLCCNH-LDNSRAVSSKRKELQKLSQWALEQL 261

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|F1S1G1 EMC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 82/194 (42%), Positives = 125/194 (64%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             RY++AL+  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct:   102 RYDDALQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHEL 161

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
              +LY++E DYAKA FC+EE            Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct:   162 AELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
             N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + R Y+       E + +
Sbjct:   222 NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYS 281

Query:   188 TETLTELMSALQVS 201
              + + +++  LQ++
Sbjct:   282 LKAVEDMLETLQIT 295

GO:0072546 "ER membrane protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1913986 Emc2 "ER membrane protein complex subunit 2" [Mus musculus (taxid:10090)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 81/194 (41%), Positives = 125/194 (64%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct:   102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKTVEAIRELNEYLEQFVGDQEAWHEL 161

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
              +LY++E DYAKA FC+EE            Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct:   162 AELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
             N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + R Y+       E + +
Sbjct:   222 NNRNMRALFGLYMSASHIASNPKASAKMKKDNIKYASWAANQINRAYQFAGRSKKETKYS 281

Query:   188 TETLTELMSALQVS 201
              + + +++  LQ++
Sbjct:   282 LKAVEDMLETLQIT 295

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0072546 "ER membrane protein complex" evidence=ISO

UNIPROTKB|Q15006 EMC2 "ER membrane protein complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 81/194 (41%), Positives = 125/194 (64%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct:   102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHEL 161

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
              +LY++E DYAKA FC+EE            Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct:   162 AELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
             N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + R Y+       E + +
Sbjct:   222 NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYS 281

Query:   188 TETLTELMSALQVS 201
              + + +++  LQ++
Sbjct:   282 LKAVEDMLETLQIT 295

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5R882 EMC2 "ER membrane protein complex subunit 2" [Pongo abelii (taxid:9601)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 81/194 (41%), Positives = 125/194 (64%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct:   102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHEL 161

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
              +LY++E DYAKA FC+EE            Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct:   162 AELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
             N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + R Y+       E + +
Sbjct:   222 NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYS 281

Query:   188 TETLTELMSALQVS 201
              + + +++  LQ++
Sbjct:   282 LKAVEDMLETLQIT 295

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|E1BRW7 TTC35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 81/194 (41%), Positives = 125/194 (64%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct:   102 RYDDAIQLYDRILQEDATNTAARKRKIAIRKAQGKNLEAIRELNEYLEQFVGDQEAWHEL 161

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
              +LY++E DYAKA FC+EE            Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct:   162 AELYINEHDYAKAAFCLEELMMANPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
             N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + R Y+       E + +
Sbjct:   222 NNRNMRALFGLYMSASHIASNPKASAKMKKDNMKYASWAANQINRAYQFAGRSKKETKYS 281

Query:   188 TETLTELMSALQVS 201
              + + +++  LQ++
Sbjct:   282 LKAVEDMLETLQIT 295

GO:0005739 "mitochondrion" evidence=IEA

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|Q5E993 EMC2 "ER membrane protein complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 80/194 (41%), Positives = 125/194 (64%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct:   102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHEL 161

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
              +LY++E DYAKA FC+EE            Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct:   162 AELYINEHDYAKAAFCLEELMMTNPYNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
             N +N+RAL+GL +S   + ++ K SA  KK+  K   W +  + + Y+       E + +
Sbjct:   222 NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINKAYQFAGRSKKETKYS 281

Query:   188 TETLTELMSALQVS 201
              + + +++  LQ++
Sbjct:   282 LKAVEDMLETLQIT 295

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1310430 Emc2 "ER membrane protein complex subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 80/194 (41%), Positives = 125/194 (64%)

Query:    15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             RY++A++  + I++ D TNTAARKRKI I KA+ K  EAI+EL EYL++F+ DQE W EL
Sbjct:   102 RYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHEL 161

Query:    75 CDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYLMAINL 134
              +LY++E DYAKA FC+EE            Q+YA++ YTQGGLEN+EL+  ++  A+ L
Sbjct:   162 AELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL 221

Query:   135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGN 187
             N +N+RAL+GL +S   + ++ K SA  KK+  +   W +  + R Y+       E + +
Sbjct:   222 NNRNMRALFGLYMSASHIASNPKASAKMKKDNIRYAGWAANQINRAYQFAGRSKKETKSS 281

Query:   188 TETLTELMSALQVS 201
              + + +++  LQ++
Sbjct:   282 LKAVEDMLETLQIT 295

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0072546 "ER membrane protein complex" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5M7J9	EMC2_XENTR	No assigned EC number	0.4381	0.9303	0.6296	yes	N/A
Q6TGY8	EMC2_DANRE	No assigned EC number	0.4639	0.9303	0.6296	yes	N/A
B0BNG0	EMC2_RAT	No assigned EC number	0.4432	0.9303	0.6296	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	201
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 5/169 (2%)

Query: 3   PIVYIIGCFHFFR--YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEY 60
           P + + G   +     E+A ++L  I+K    +  AR+    I     ++ EAI  L+  
Sbjct: 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPA 355

Query: 61  LKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLEN 120
           L     D      L + YL+ GD+ KA   + +     P N     +   I     G  +
Sbjct: 356 LGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG-ISKLSQG--D 412

Query: 121 IELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ 169
              AI+    A  L+ +  RA   L LS  +     K  AA KK   KQ
Sbjct: 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 38  KRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH 97
                +        EA++   + L+    + + +  L   Y   G Y +A+   E+    
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 98  HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
            P N   +       Y  G     E A+  Y  A+ L+  
Sbjct: 64  DPDNAKAYYNLGLAYYKLG---KYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 69  ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
           E    L +LY   GDY +A+   E+     P N   +   A   Y  G     E A+  Y
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG---KYEEALEDY 57

Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
             A+ L+  N +A Y L L+ ++
Sbjct: 58  EKALELDPDNAKAYYNLGLAYYK 80

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 69  ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
           E  + L +     GDY +A+   E+     P N   +   A      G  ++ E A+   
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLG--KDYEEALEDL 61

Query: 129 LMAINLNE 136
             A+ L+ 
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 23/98 (23%), Positives = 41/98 (41%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           ++++ALE    +++ D  N          L    K  EA+K L EY+ +F TD   ++ L
Sbjct: 101 QWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDAARYEAL 160

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL 112
             +  +  D+  A+   ++     P N         IL
Sbjct: 161 AYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRIL 198

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 10/135 (7%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
           Y+ A+  L+  ++ D  +  AR     I  A      A KEL + L       +    L 
Sbjct: 38  YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLA 97

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG----GLENIELAISHYLMA 131
             YL +G + + +  +    L      L  +  A++L  +G    GL  +ELA   Y  A
Sbjct: 98  RAYLLQGKFQQVLDELPGKTL------LDDEGAAELLALRGLAYLGLGQLELAQKSYEQA 151

Query: 132 INLNEKNIRALYGLA 146
           + ++ +++ A  GLA
Sbjct: 152 LAIDPRSLYAKLGLA 166

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 3/132 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             EEA+  LE   +++                K ++ +A+  L E         E W  L
Sbjct: 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML 607

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
               L+ GD  KAV   ++L    P + L     AD       ++N   AI+    A+ L
Sbjct: 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA---YAVMKNYAKAITSLKRALEL 664

Query: 135 NEKNIRALYGLA 146
              N  A  GLA
Sbjct: 665 KPDNTEAQIGLA 676

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
KOG3060|consensus	289		99.94
KOG4626|consensus	966		99.91
KOG4626|consensus	966		99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
KOG1126|consensus	638		99.88
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.87
KOG1155|consensus	559		99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK15359	144	type III secretion system chaperone protein SscB;	99.85
KOG1155|consensus	559		99.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.84
PRK12370	553	invasion protein regulator; Provisional	99.83
PRK12370	553	invasion protein regulator; Provisional	99.83
KOG1125|consensus	579		99.82
KOG1126|consensus	638		99.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.8
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.79
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.79
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.78
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.78
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.78
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.78
PRK11189	296	lipoprotein NlpI; Provisional	99.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.77
PRK11189	296	lipoprotein NlpI; Provisional	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.76
KOG0547|consensus	606		99.75
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.75
PRK15359	144	type III secretion system chaperone protein SscB;	99.75
KOG0547|consensus	606		99.71
PLN02789	320	farnesyltranstransferase	99.7
KOG1173|consensus	611		99.69
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.69
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.69
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.68
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.68
KOG0553|consensus	304		99.68
KOG1173|consensus	611		99.67
KOG0553|consensus	304		99.67
KOG0624|consensus	504		99.66
KOG1174|consensus	564		99.66
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.66
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.65
PLN02789	320	farnesyltranstransferase	99.65
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.64
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.64
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.64
KOG2076|consensus	895		99.63
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.61
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.59
PRK14574	822	hmsH outer membrane protein; Provisional	99.59
KOG2003|consensus	840		99.58
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.58
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.58
KOG0550|consensus	486		99.58
KOG3060|consensus	289		99.57
KOG0548|consensus	539		99.57
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.57
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.56
KOG1129|consensus	478		99.56
KOG1129|consensus	478		99.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.55
KOG2002|consensus	1018		99.53
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.52
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.52
KOG1156|consensus	700		99.51
KOG2002|consensus	1018		99.51
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.51
KOG1840|consensus	508		99.5
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.5
PRK14574	822	hmsH outer membrane protein; Provisional	99.5
KOG1125|consensus	579		99.5
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.49
KOG2076|consensus	895		99.49
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.49
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.49
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.48
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.48
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.47
KOG0495|consensus	913		99.47
KOG0548|consensus	539		99.47
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.47
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.45
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.44
KOG0495|consensus	913		99.43
KOG4162|consensus	799		99.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.43
PRK15331	165	chaperone protein SicA; Provisional	99.43
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.42
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.41
KOG1127|consensus	1238		99.41
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.4
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.4
KOG0624|consensus	504		99.4
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.4
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.4
KOG1174|consensus	564		99.38
PRK10803	263	tol-pal system protein YbgF; Provisional	99.38
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.37
KOG1128|consensus	777		99.37
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.36
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.36
PRK10803	263	tol-pal system protein YbgF; Provisional	99.36
KOG4162|consensus	799		99.35
KOG0543|consensus	397		99.34
KOG1840|consensus	508		99.34
PRK11906	458	transcriptional regulator; Provisional	99.33
KOG0550|consensus	486		99.32
KOG2003|consensus	840		99.31
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.31
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.31
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.3
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.3
PRK15331	165	chaperone protein SicA; Provisional	99.29
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.29
KOG0543|consensus	397		99.28
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.26
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.25
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.25
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.23
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.22
PF13371	73	TPR_9: Tetratricopeptide repeat	99.2
PF13371	73	TPR_9: Tetratricopeptide repeat	99.18
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.17
PF13512	142	TPR_18: Tetratricopeptide repeat	99.16
KOG1156|consensus	700		99.16
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.16
PF12688	120	TPR_5: Tetratrico peptide repeat	99.16
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.15
KOG1128|consensus	777		99.15
KOG1127|consensus	1238		99.14
KOG3785|consensus	557		99.11
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.1
PLN03218	1060	maturation of RBCL 1; Provisional	99.09
KOG4234|consensus	271		99.09
PLN03218	1060	maturation of RBCL 1; Provisional	99.08
COG4700	251	Uncharacterized protein conserved in bacteria cont	99.07
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.06
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.06
PF13512	142	TPR_18: Tetratricopeptide repeat	99.05
KOG2376|consensus	652		99.03
KOG4340|consensus	459		99.02
PLN03077	857	Protein ECB2; Provisional	99.01
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.01
PF12688	120	TPR_5: Tetratrico peptide repeat	99.0
KOG4234|consensus	271		98.99
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.99
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.99
KOG4648|consensus	536		98.98
KOG4648|consensus	536		98.97
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.96
PRK11906	458	transcriptional regulator; Provisional	98.96
KOG3785|consensus	557		98.94
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.93
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.93
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.9
KOG2376|consensus	652		98.89
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.89
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.88
KOG3081|consensus	299		98.86
KOG2796|consensus	366		98.84
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.84
KOG4555|consensus	175		98.84
PLN03077	857	Protein ECB2; Provisional	98.83
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.83
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.82
KOG1915|consensus	677		98.81
KOG4555|consensus	175		98.8
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.8
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.77
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.76
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.76
KOG2053|consensus	932		98.75
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.73
KOG1915|consensus	677		98.71
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.7
PF13428	44	TPR_14: Tetratricopeptide repeat	98.67
KOG1130|consensus	639		98.67
KOG4340|consensus	459		98.64
KOG1070|consensus	1710		98.63
PF13428	44	TPR_14: Tetratricopeptide repeat	98.62
KOG0376|consensus	476		98.62
KOG0376|consensus	476		98.61
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.59
KOG4642|consensus	284		98.58
KOG2796|consensus	366		98.58
KOG4642|consensus	284		98.56
KOG1070|consensus	1710		98.52
KOG1130|consensus	639		98.5
KOG2053|consensus	932		98.48
PRK04841	903	transcriptional regulator MalT; Provisional	98.45
PF13431	34	TPR_17: Tetratricopeptide repeat	98.43
KOG0545|consensus	329		98.41
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.4
KOG2610|consensus	491		98.4
KOG2471|consensus	696		98.4
KOG0551|consensus	390		98.38
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.38
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.36
PRK04841	903	transcriptional regulator MalT; Provisional	98.33
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.31
KOG1941|consensus	518		98.27
KOG3081|consensus	299		98.27
PF13431	34	TPR_17: Tetratricopeptide repeat	98.27
KOG1586|consensus	288		98.25
KOG0545|consensus	329		98.17
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.16
KOG1941|consensus	518		98.15
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.13
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.11
KOG0551|consensus	390		98.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.09
KOG1308|consensus	377		98.08
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.06
KOG2610|consensus	491		98.04
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.99
KOG2396|consensus	568		97.99
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.97
KOG1585|consensus	308		97.96
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.92
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.91
KOG1308|consensus	377		97.9
KOG1586|consensus	288		97.89
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.8
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.76
PRK10941	269	hypothetical protein; Provisional	97.75
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.7
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.68
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.68
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.67
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.66
KOG4507|consensus	886		97.66
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.63
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.63
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.62
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.6
KOG0530|consensus	318		97.6
KOG2396|consensus	568		97.59
KOG2047|consensus	835		97.58
PRK10941	269	hypothetical protein; Provisional	97.58
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.57
KOG3824|consensus	472		97.54
KOG1550|consensus	552		97.51
KOG2047|consensus	835		97.51
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.47
KOG3824|consensus	472		97.44
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.44
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.42
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.4
KOG2471|consensus	696		97.36
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.36
KOG3364|consensus	149		97.36
KOG1585|consensus	308		97.34
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.33
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.33
KOG4507|consensus	886		97.33
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.3
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.27
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.25
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.23
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.21
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.19
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.12
KOG0530|consensus	318		97.08
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.06
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.03
KOG4814|consensus	872		96.99
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.92
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.88
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.88
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.87
KOG1550|consensus	552		96.86
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.82
KOG3617|consensus	1416		96.76
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.74
KOG2300|consensus	629		96.7
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.68
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.67
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.65
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.64
COG2912	269	Uncharacterized conserved protein [Function unknow	96.62
KOG1258|consensus	577		96.55
KOG3364|consensus	149		96.44
KOG4814|consensus	872		96.41
KOG1310|consensus	758		96.36
KOG2300|consensus	629		96.32
KOG3617|consensus	1416		96.22
KOG1914|consensus	656		96.21
KOG0529|consensus	421		96.2
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.19
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.17
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.12
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.12
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.1
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	96.08
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.07
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.07
KOG0529|consensus	421		95.98
KOG1310|consensus	758		95.97
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.84
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.83
KOG1914|consensus	656		95.8
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.8
COG2912	269	Uncharacterized conserved protein [Function unknow	95.78
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.7
KOG1258|consensus	577		95.68
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.65
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.63
KOG2581|consensus	493		95.59
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.58
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.53
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.44
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.34
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.29
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.25
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.14
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.05
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.04
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.95
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.55
KOG1839|consensus	1236		94.43
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.4
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.22
KOG2041|consensus	1189		94.1
KOG0890|consensus	2382		93.95
KOG0985|consensus	1666		93.91
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.82
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.81
COG3947	361	Response regulator containing CheY-like receiver a	93.77
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.73
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.71
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.71
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.57
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.55
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	93.51
COG3947	361	Response regulator containing CheY-like receiver a	93.5
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.44
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.39
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	93.39
KOG0985|consensus	1666		92.94
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.83
PF12854	34	PPR_1: PPR repeat	92.7
KOG0546|consensus	372		92.6
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.54
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.53
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.16
KOG2422|consensus	665		91.67
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.67
KOG0890|consensus	2382		91.58
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	91.47
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	91.32
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.07
KOG0276|consensus	794		90.67
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.65
PF12854	34	PPR_1: PPR repeat	90.5
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.41
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	89.9
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.84
smart00299	140	CLH Clathrin heavy chain repeat homology.	89.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.5
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.9
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	88.47
KOG0128|consensus	881		88.47
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	88.3
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	88.27
KOG3807|consensus	556		88.21
KOG1538|consensus	1081		88.14
KOG2581|consensus	493		88.08
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.02
PF04090	199	RNA_pol_I_TF: RNA polymerase I specific initiation	87.77
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.57
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.54
PF13041	50	PPR_2: PPR repeat family	87.17
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	86.46
KOG1463|consensus	411		86.04
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	85.58
PHA02537	230	M terminase endonuclease subunit; Provisional	85.16
PF13041	50	PPR_2: PPR repeat family	85.11
KOG1839|consensus	1236		84.75
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	84.65
KOG2041|consensus	1189		84.63
KOG3783|consensus	546		84.6
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	84.47
KOG3783|consensus	546		84.4
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	84.31
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	83.75
KOG3616|consensus	1636		83.67
COG4259	121	Uncharacterized protein conserved in bacteria [Fun	83.59
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.45
KOG0686|consensus	466		83.3
COG4941	415	Predicted RNA polymerase sigma factor containing a	83.21
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.11
PF14852	35	Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repe	83.03
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	83.0
KOG0686|consensus	466		82.96
TIGR02710	380	CRISPR-associated protein, TIGR02710 family. Membe	82.84
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	82.4
KOG0546|consensus	372		82.38
KOG4151|consensus	748		81.69
KOG2422|consensus	665		81.67
KOG4014|consensus	248		80.13

>KOG3060|consensus

Probab=99.94  E-value=1e-24  Score=153.89  Aligned_cols=198  Identities=42%  Similarity=0.659  Sum_probs=184.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      .+.++.+...|++++|+++|+..++.+|++..++.+...+...+|+..+|++.+...++.+|.|.++|..++.+|+..|+
T Consensus        90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~  169 (289)
T KOG3060|consen   90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD  169 (289)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence            45778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      |++|.-|+++.+-+.|.++..+..+|.+++..|+.+++.-|.++|.++++++|.+.++++++..|.....+..++....+
T Consensus       170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~k~~  249 (289)
T KOG3060|consen  170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAELKRK  249 (289)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence            99999999999999999999999999999999998999999999999999999999999999999999999999988777


Q ss_pred             HH--HHHHhHHHHHHHHHHHHhhhcchHHHHHHHhhccCC
Q psy12642        164 KE--ISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS  201 (201)
Q Consensus       164 ~~--~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~  201 (201)
                      +.  ..++..|+..++.++|....+....+...+-.++|.
T Consensus       250 K~~a~~~l~~~aas~l~r~~q~s~~~~d~i~~~l~~lKi~  289 (289)
T KOG3060|consen  250 KDVAAPDLISLAASQLERISQKSKNKLDLITAALENLKIT  289 (289)
T ss_pred             hhhhhhhHHHhHHHHHHHHHHhccchhhHHHHHHHHhccC
Confidence            77  678999999999999966666666888777777763

>KOG4626|consensus

Probab=99.91  E-value=1.1e-22  Score=159.30  Aligned_cols=189  Identities=17%  Similarity=0.218  Sum_probs=158.1

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      |..+|..+-|+..|+++++.+|+.+.++..+|..+...|+..+|+.+|++++.+.|+.+++...+|.+|..+|.+++|..
T Consensus       296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~  375 (966)
T KOG4626|consen  296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR  375 (966)
T ss_pred             EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence            56788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ  169 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  169 (201)
                      .|.+++...|.-..++.++|.+|...|   ++++|+.+|+.++++.|....++.++|..|..+|+.+.|.....+.++-.
T Consensus       376 ly~~al~v~p~~aaa~nNLa~i~kqqg---nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n  452 (966)
T KOG4626|consen  376 LYLKALEVFPEFAAAHNNLASIYKQQG---NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN  452 (966)
T ss_pred             HHHHHHhhChhhhhhhhhHHHHHHhcc---cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence            888888888888888888888888888   88888888888888888888888888888888888888888777776543


Q ss_pred             hHH--HHHHHHHHHHhhhcchHHHHHHHhhccCC
Q psy12642        170 MMW--VSKHLARQYEEQQGNTETLTELMSALQVS  201 (201)
Q Consensus       170 ~~~--~~~~l~~~y~~~~~~~~~~~~~~~~~~~~  201 (201)
                      ...  +-..|.-+|+......++++.|-.+|+|+
T Consensus       453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            333  33457788888887778888888888764

>KOG4626|consensus

Probab=99.91  E-value=5.2e-23  Score=161.08  Aligned_cols=188  Identities=16%  Similarity=0.113  Sum_probs=118.6

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      +..+|+.-.|+..|++++..+|+.+.+++.+|.+|.+.+.++.|+..|.+++...|++..++-.+|.+|+.+|..+-|+.
T Consensus       228 f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~  307 (966)
T KOG4626|consen  228 FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAID  307 (966)
T ss_pred             HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHH
Confidence            44566777777777777777777777777777777777777777666666666666666666666666666666666666


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ  169 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  169 (201)
                      +|++++.+.|+.+.++.++|.++...|   +..+|..+|.+++.+.|+++.+.++|+.+|..+|..+.|..-.++...-.
T Consensus       308 ~Ykral~~~P~F~~Ay~NlanALkd~G---~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~  384 (966)
T KOG4626|consen  308 TYKRALELQPNFPDAYNNLANALKDKG---SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF  384 (966)
T ss_pred             HHHHHHhcCCCchHHHhHHHHHHHhcc---chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence            666666666666666666666666666   66666666666666666666666666666666666666655444443333


Q ss_pred             hHHHHH--HHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        170 MMWVSK--HLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       170 ~~~~~~--~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      ...+..  .|.-+|+++.+-++++.+|-.++.|
T Consensus       385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI  417 (966)
T ss_pred             hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence            333222  3444455554444455554444443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=2.2e-20  Score=153.94  Aligned_cols=157  Identities=13%  Similarity=0.033  Sum_probs=148.1

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      ..+..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.+++..|++
T Consensus       336 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  415 (615)
T TIGR00990       336 LRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF  415 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            34556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      ++|+.+|++++.++|++...+..+|.++...|   ++++|+..|++++...|+++.++..++.++...|++.+|.....+
T Consensus       416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~  492 (615)
T TIGR00990       416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG---SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT  492 (615)
T ss_pred             HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999999999999999999999999   999999999999999999999999999999999999999765444

>KOG1126|consensus

Probab=99.88  E-value=1.2e-21  Score=154.13  Aligned_cols=192  Identities=16%  Similarity=0.060  Sum_probs=172.2

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      |-+.+-+|.-+++++.|+.+|+++++.+|.+..++-.+|.=+.....++.|...|+.++..+|.+..+|+.+|.+|.+++
T Consensus       424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe  503 (638)
T KOG1126|consen  424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE  503 (638)
T ss_pred             HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence            44566778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      +++.|.-.|++|+.++|.+......+|.++...|   +.++|+..|++|+.++|.++...+..+.++..++++.+|..+.
T Consensus       504 k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k---~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L  580 (638)
T KOG1126|consen  504 KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK---RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL  580 (638)
T ss_pred             hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh---hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence            9999999999999999999999999999999999   9999999999999999999999999999999999999997766


Q ss_pred             HHHHHHHhHHHHH--HHHHHHHhhhcchHHHHHHHhh
Q psy12642        163 KKEISKQMMWVSK--HLARQYEEQQGNTETLTELMSA  197 (201)
Q Consensus       163 ~~~~~~~~~~~~~--~l~~~y~~~~~~~~~~~~~~~~  197 (201)
                      ++-..-..+.+..  -+.++|+...+++.++....=+
T Consensus       581 EeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A  617 (638)
T KOG1126|consen  581 EELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA  617 (638)
T ss_pred             HHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence            5554434444433  4778899988888876655433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.87  E-value=5.7e-20  Score=128.46  Aligned_cols=160  Identities=13%  Similarity=0.048  Sum_probs=150.3

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      .|-.++.|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|-.++.+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLH--HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        83 ~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      ++++|...|++++..  .|..+..+.++|.|..+.|   +.+.|..+|+++++.+|+.+.+...++......|++..|..
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~g---q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAG---QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcC---CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            999999999999974  3566779999999999999   99999999999999999999999999999999999999977


Q ss_pred             hhHHH
Q psy12642        161 AKKKE  165 (201)
Q Consensus       161 ~~~~~  165 (201)
                      -.+..
T Consensus       195 ~~~~~  199 (250)
T COG3063         195 YLERY  199 (250)
T ss_pred             HHHHH
Confidence            55444

>KOG1155|consensus

Probab=99.86  E-value=1.3e-19  Score=137.77  Aligned_cols=156  Identities=16%  Similarity=0.086  Sum_probs=149.3

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      .|.-.+++++|+.+|+.+++.+|....+|..+|.-|.++++...|+..|+++++.+|.|..+|+.+|+.|.-++-+.=|+
T Consensus       339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaL  418 (559)
T KOG1155|consen  339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYAL  418 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHH
Confidence            35567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS  167 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  167 (201)
                      -+|++++...|+|+..|..+|.||.+.+   +.++|+++|.+++.....+..+++.||..|.++++..+|....++.+.
T Consensus       419 yYfqkA~~~kPnDsRlw~aLG~CY~kl~---~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  419 YYFQKALELKPNDSRLWVALGECYEKLN---RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHhc---cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999   999999999999999999999999999999999999999887776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=2.3e-19  Score=148.02  Aligned_cols=185  Identities=17%  Similarity=0.125  Sum_probs=159.4

Q ss_pred             ccCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKI---DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      .++|++|+..|++++..   .|....++..+|.++..+|++++|+..+++++..+|++...|..+|.++...|++++|+.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            46899999999999986   478888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ  169 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  169 (201)
                      .|++++..+|+++.+++.+|.+++..|   ++++|+..|++++.++|++..++.+++.++..+|++++|...........
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  463 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKG---EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF  463 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999   99999999999999999999999999999999999999977665544321


Q ss_pred             h--HHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        170 M--MWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       170 ~--~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      .  ..+...+...|......+.++..+.+++.+
T Consensus       464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            1  233334555566555555566655555443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.85  E-value=2.1e-19  Score=121.50  Aligned_cols=128  Identities=10%  Similarity=-0.002  Sum_probs=120.3

Q ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642         20 LEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP   99 (201)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   99 (201)
                      ...++++++.+|++   +..+|.++...|++++|+..|.+++..+|.+..+|..+|.++...|++++|+..|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46889999999986   456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642        100 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus       100 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      +++..++.+|.++...|   ++++|+..|.++++..|+++..+..++.+.....
T Consensus        90 ~~~~a~~~lg~~l~~~g---~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMG---EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             CCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999   9999999999999999999999988888776544

>KOG1155|consensus

Probab=99.84  E-value=1.6e-19  Score=137.30  Aligned_cols=186  Identities=13%  Similarity=0.067  Sum_probs=159.5

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHH----------------------------------HHHHHHHHcCCHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARK----------------------------------RKICILKAKNKIPEA   53 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----------------------------------~~a~~~~~~~~~~~A   53 (201)
                      .....+.+|++|+..|+.+.+.+|....-.-                                  .+|..|...++.++|
T Consensus       270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKA  349 (559)
T KOG1155|consen  270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKA  349 (559)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHH
Confidence            4456789999999999999999986541111                                  124445556788999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642         54 IKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        54 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      +.+|+++++++|....+|..+|.=|..+++...|+..|++|+.++|.|..+|+.+|++|..++   -..=|+-+|+++++
T Consensus       350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~---Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK---MHFYALYYFQKALE  426 (559)
T ss_pred             HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc---chHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999   99999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH--HHhHHHHHHHHHHHHhhhcchHHHHHHHh
Q psy12642        134 LNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS--KQMMWVSKHLARQYEEQQGNTETLTELMS  196 (201)
Q Consensus       134 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~y~~~~~~~~~~~~~~~  196 (201)
                      ..|++++.|..||.||.++++.++|+...+....  +...-+...|.+.|++.....++...+.+
T Consensus       427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek  491 (559)
T KOG1155|consen  427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK  491 (559)
T ss_pred             cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            9999999999999999999999999998887753  44556666777788877766665554444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.84  E-value=1.6e-18  Score=125.64  Aligned_cols=159  Identities=13%  Similarity=0.092  Sum_probs=147.1

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..++..|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus        35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~  114 (234)
T TIGR02521        35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK  114 (234)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         84 YAKAVFCMEELFLHH--PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        84 ~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      +++|+..+++++...  +.....+..+|.++...|   ++++|...+.+++..+|+++.++..++.++...|++++|...
T Consensus       115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  191 (234)
T TIGR02521       115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG---DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY  191 (234)
T ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999754  456778899999999999   999999999999999999999999999999999999999765


Q ss_pred             hHHH
Q psy12642        162 KKKE  165 (201)
Q Consensus       162 ~~~~  165 (201)
                      ..+.
T Consensus       192 ~~~~  195 (234)
T TIGR02521       192 LERY  195 (234)
T ss_pred             HHHH
Confidence            5443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.83  E-value=2.4e-18  Score=140.08  Aligned_cols=143  Identities=13%  Similarity=-0.083  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELF   95 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al   95 (201)
                      +++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.++...|++++|+..+++++
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al  399 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL  399 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         96 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN-EKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        96 ~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      .++|.++.....++.+++..|   ++++|+..+++++... |+++.++..++.++...|+.++|...
T Consensus       400 ~l~P~~~~~~~~~~~~~~~~g---~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~  463 (553)
T PRK12370        400 KLDPTRAAAGITKLWITYYHT---GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL  463 (553)
T ss_pred             hcCCCChhhHHHHHHHHHhcc---CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            555555544444444445555   5555555555555443 44555555555555555555555443

>PRK12370 invasion protein regulator; Provisional

Probab=99.83  E-value=4.4e-18  Score=138.52  Aligned_cols=148  Identities=15%  Similarity=-0.036  Sum_probs=136.0

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ..++..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|+
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~  421 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG  421 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence            34555677899999999999999999999999999999999999999999999999999999998877777777888999


Q ss_pred             HHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642         84 YAKAVFCMEELFLHH-PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus        84 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      +++|+..+++++... |+++..+..+|.++...|   ++++|+..+.+.....|....++..++..|...|+
T Consensus       422 ~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G---~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  490 (553)
T PRK12370        422 IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG---KHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE  490 (553)
T ss_pred             HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC---CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence            999999999999875 788999999999999999   99999999999999999999999999999998885

>KOG1125|consensus

Probab=99.82  E-value=4.8e-19  Score=137.72  Aligned_cols=156  Identities=24%  Similarity=0.241  Sum_probs=125.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH--------------
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE--------------   69 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------   69 (201)
                      +.-++.+++.|+..+|.-.|+.++..+|.+..+|..+|.+....++-..|+..++++++++|++..              
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            344555666677777777777777777777777766666666666666666666666555555543              


Q ss_pred             ---------------------------------------------------------------HHHHHHHHHHhcCCHHH
Q psy12642         70 ---------------------------------------------------------------TWQELCDLYLSEGDYAK   86 (201)
Q Consensus        70 ---------------------------------------------------------------~~~~l~~~~~~~~~~~~   86 (201)
                                                                                     +...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence                                                                           35567777888889999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      |+.+|+.+|...|+|...|..+|-++....   +..+|+..|.+|+++.|+.++++++||.+|..+|.+++|....
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~---~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGN---RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCc---ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            999999999999999999999999988888   9999999999999999999999999999999999999996643

>KOG1126|consensus

Probab=99.82  E-value=2.9e-19  Score=140.80  Aligned_cols=150  Identities=12%  Similarity=0.051  Sum_probs=145.1

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A   87 (201)
                      ..+.....+|.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-+|++++.++|.+......+|.++.+.|+.++|
T Consensus       463 hE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A  542 (638)
T KOG1126|consen  463 HESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA  542 (638)
T ss_pred             ChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      +..+++|+.++|.|+...+..|.+++..+   ++++|+..+++.-++-|++..+++.++.+|.++|+...|..
T Consensus       543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~---~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~  612 (638)
T KOG1126|consen  543 LQLYEKAIHLDPKNPLCKYHRASILFSLG---RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL  612 (638)
T ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHhhc---chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence            99999999999999999999999999999   99999999999999999999999999999999999999954

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.81  E-value=1.2e-17  Score=142.17  Aligned_cols=157  Identities=12%  Similarity=-0.017  Sum_probs=142.2

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+...|++++|+.++++++..+|.+......++......|++++|+..++++++.+|+ +.++..+|.++.+.|+++
T Consensus       548 la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~d  626 (987)
T PRK09782        548 AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVP  626 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHH
Confidence            3455678899999999999999999988877777777777779999999999999999996 899999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      +|+..|++++..+|+++.++..+|.++...|   ++++|+..|+++++.+|+++.++++++.++...|+.++|.....+.
T Consensus       627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G---~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        627 AAVSDLRAALELEPNNSNYQAALGYALWDSG---DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999   9999999999999999999999999999999999999997765554


Q ss_pred             H
Q psy12642        166 I  166 (201)
Q Consensus       166 ~  166 (201)
                      .
T Consensus       704 l  704 (987)
T PRK09782        704 I  704 (987)
T ss_pred             H
Confidence            3

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.80  E-value=1.5e-17  Score=137.61  Aligned_cols=155  Identities=14%  Similarity=0.092  Sum_probs=112.8

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPE----AIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      +..+...|++++|+..++++++.+|+++.++..+|.++...|++++    |+..+++++..+|+++.++..+|.++...|
T Consensus       219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  298 (656)
T PRK15174        219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG  298 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence            3445667777777777777777777777777777777777777764    677777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ++++|+..+++++..+|+++.++..+|.++...|   ++++|+..|++++..+|++...+..++.++...|+.++|....
T Consensus       299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G---~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l  375 (656)
T PRK15174        299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG---QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF  375 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7777777777777777777777777777777777   7777777777777777776666666677777777777776544


Q ss_pred             HH
Q psy12642        163 KK  164 (201)
Q Consensus       163 ~~  164 (201)
                      ..
T Consensus       376 ~~  377 (656)
T PRK15174        376 EH  377 (656)
T ss_pred             HH
Confidence            43

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.80  E-value=1.2e-17  Score=122.27  Aligned_cols=156  Identities=13%  Similarity=0.063  Sum_probs=137.8

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE---TWQELCDL   77 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~   77 (201)
                      +..+..++..|++++|+..+++++..+|.++   .+++.+|.++...|++++|+..++++++.+|+++.   +++.+|.+
T Consensus        37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~  116 (235)
T TIGR03302        37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLS  116 (235)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHH
Confidence            4456778899999999999999999999876   57899999999999999999999999999998865   68889999


Q ss_pred             HHhc--------CCHHHHHHHHHHHhhcCCCCHHHH-----------------HHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         78 YLSE--------GDYAKAVFCMEELFLHHPHNHLLH-----------------QRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        78 ~~~~--------~~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      +...        |++++|+..|++++..+|++...+                 ..+|.+++..|   ++.+|+..|++++
T Consensus       117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al  193 (235)
T TIGR03302       117 NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG---AYVAAINRFETVV  193 (235)
T ss_pred             HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHH
Confidence            9876        889999999999999999986542                 35688889999   9999999999999


Q ss_pred             cCCccc---HHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642        133 NLNEKN---IRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       133 ~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ...|+.   +.+++.++.++..+|++++|....
T Consensus       194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~  226 (235)
T TIGR03302       194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDAA  226 (235)
T ss_pred             HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            997754   589999999999999999996543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.79  E-value=4.7e-17  Score=117.88  Aligned_cols=153  Identities=12%  Similarity=0.084  Sum_probs=141.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhcC
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--MTDQETWQELCDLYLSEG   82 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~   82 (201)
                      ..+..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...  |.....+..+|.++...|
T Consensus        70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  149 (234)
T TIGR02521        70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG  149 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence            355668889999999999999999999999999999999999999999999999999853  456778899999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      ++++|...+++++..+|+++..+..+|.++...|   ++++|+.++++++...|.++..+..++.++...|+.+++..
T Consensus       150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  224 (234)
T TIGR02521       150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRG---QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR  224 (234)
T ss_pred             CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999999999999999999   99999999999999999889999999999999999888844

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.79  E-value=1.8e-17  Score=117.77  Aligned_cols=121  Identities=14%  Similarity=0.123  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhcCC--HHHHHHHH
Q psy12642         15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLY-LSEGD--YAKAVFCM   91 (201)
Q Consensus        15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~~~   91 (201)
                      +.++++..++++++.+|+++..|..+|.++...|++++|+..|+++++..|+++.++..+|.++ ...|+  +++|...+
T Consensus        54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l  133 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI  133 (198)
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            3355555555555555666666666666666666666666666666666666666665555542 44444  35566666


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642         92 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus        92 ~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      +++++.+|+++.+++.+|..++..|   ++++|+.+|+++++..|.+
T Consensus       134 ~~al~~dP~~~~al~~LA~~~~~~g---~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        134 DKALALDANEVTALMLLASDAFMQA---DYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Confidence            6666666666666666666666666   5666666666665555543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.79  E-value=6.5e-17  Score=133.90  Aligned_cols=156  Identities=13%  Similarity=0.049  Sum_probs=144.2

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..++.+...|++++|+..++.++...|.++.++..++.+....|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus        46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~  125 (656)
T PRK15174         46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ  125 (656)
T ss_pred             HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +++|+..+++++..+|+++.++..++.++...|   ++++|+..+.+++...|+++.++..++ .+...|+..+|.....
T Consensus       126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g---~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~  201 (656)
T PRK15174        126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMD---KELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLAR  201 (656)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999   999999999999999999888877664 4778899888866443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.78  E-value=8.4e-17  Score=140.83  Aligned_cols=149  Identities=13%  Similarity=0.080  Sum_probs=132.0

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH--------------HH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET--------------WQ   72 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~~   72 (201)
                      +..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++...              ..
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            5667889999999999999999999999999999999999999999999999999999986431              23


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV  152 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  152 (201)
                      ..|.++...|++++|+..|++++..+|+++.++..+|.++...|   ++++|+++|+++++.+|++..++..++.++.. 
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g---~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-  431 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK---DYAAAERYYQQALRMDPGNTNAVRGLANLYRQ-  431 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-
Confidence            45788899999999999999999999999999999999999999   99999999999999999999999888888754 


Q ss_pred             hhhhhhh
Q psy12642        153 LTSAKCS  159 (201)
Q Consensus       153 ~~~~~a~  159 (201)
                      ++.++|.
T Consensus       432 ~~~~~A~  438 (1157)
T PRK11447        432 QSPEKAL  438 (1157)
T ss_pred             cCHHHHH
Confidence            3445553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.78  E-value=4.4e-17  Score=109.18  Aligned_cols=120  Identities=16%  Similarity=0.102  Sum_probs=114.4

Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642         21 EHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  100 (201)
                      +.|++++..+|.+..+...+|.++...|++++|...+++++..+|+++.++..+|.++...|++++|+.++++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHH
Q psy12642        101 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY  143 (201)
Q Consensus       101 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  143 (201)
                      ++..++.+|.++...|   ++++|+..|+++++.+|++.....
T Consensus        84 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~  123 (135)
T TIGR02552        84 DPRPYFHAAECLLALG---EPESALKALDLAIEICGENPEYSE  123 (135)
T ss_pred             ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhccccchHHH
Confidence            9999999999999999   999999999999999998876443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.78  E-value=1.9e-16  Score=123.97  Aligned_cols=155  Identities=14%  Similarity=0.057  Sum_probs=110.1

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHh
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-----ETWQELCDLYLS   80 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~   80 (201)
                      .+..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+.++++..|.+.     ..+..+|.++..
T Consensus       113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  192 (389)
T PRK11788        113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA  192 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence            345566677777777777777777777777777777777777777777777777777666542     244556777777


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHHhhhhhhhh
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-IRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      .|++++|+..|++++..+|++...+..+|.++...|   ++++|++.|++++..+|.+ ..++..++.+|...|+.++|.
T Consensus       193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  269 (389)
T PRK11788        193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQG---DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL  269 (389)
T ss_pred             CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence            777777777777777777777777777777777777   7777777777777777654 345666777777777777775


Q ss_pred             hhhH
Q psy12642        160 AAKK  163 (201)
Q Consensus       160 ~~~~  163 (201)
                      ....
T Consensus       270 ~~l~  273 (389)
T PRK11788        270 EFLR  273 (389)
T ss_pred             HHHH
Confidence            5433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.78  E-value=2e-16  Score=138.50  Aligned_cols=155  Identities=15%  Similarity=0.106  Sum_probs=115.2

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH-------------
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE-------------   73 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-------------   73 (201)
                      +..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+++..++.             
T Consensus       468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~  547 (1157)
T PRK11447        468 AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA  547 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence            3456678999999999999999999999999999999999999999999999999888877655443             


Q ss_pred             -------------------------------------------------------------HHHHHHhcCCHHHHHHHHH
Q psy12642         74 -------------------------------------------------------------LCDLYLSEGDYAKAVFCME   92 (201)
Q Consensus        74 -------------------------------------------------------------l~~~~~~~~~~~~A~~~~~   92 (201)
                                                                                   +|.++...|++++|+..|+
T Consensus       548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~  627 (1157)
T PRK11447        548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQ  627 (1157)
T ss_pred             HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                                                         4455555666666666666


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642         93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus        93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      +++..+|+++.++..++.++...|   ++++|+..++++++..|+++..+..++.++...|+.++|.....+
T Consensus       628 ~al~~~P~~~~a~~~la~~~~~~g---~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  696 (1157)
T PRK11447        628 RVLTREPGNADARLGLIEVDIAQG---DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR  696 (1157)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            666666666666666666666666   666666666666666666666666666666666666666554433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.77  E-value=4.4e-16  Score=117.56  Aligned_cols=96  Identities=10%  Similarity=-0.025  Sum_probs=60.9

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.++...|++++
T Consensus        71 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~e  150 (296)
T PRK11189         71 GVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYEL  150 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhhcCCCCH
Q psy12642         87 AVFCMEELFLHHPHNH  102 (201)
Q Consensus        87 A~~~~~~al~~~~~~~  102 (201)
                      |+..|++++..+|+++
T Consensus       151 A~~~~~~al~~~P~~~  166 (296)
T PRK11189        151 AQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHHHhCCCCH
Confidence            6666666666666655

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.77  E-value=2.1e-16  Score=134.58  Aligned_cols=187  Identities=19%  Similarity=0.146  Sum_probs=129.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+...|++++|+..|++++...|++ ..+..++.++...|++++|+..+++++...|+++.++..+|.++...|+++
T Consensus       709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~  787 (899)
T TIGR02917       709 EGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD  787 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence            3445566777777777777777777666 555667777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      +|+..|++++..+|+++..+..+|.++...|   + .+|+..+++++...|+++..+..++.++...|++++|....++.
T Consensus       788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  863 (899)
T TIGR02917       788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELK---D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA  863 (899)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777777777777777777777777777777   6 66777777777777777777777777777777777776655544


Q ss_pred             HHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhh
Q psy12642        166 ISKQ--MMWVSKHLARQYEEQQGNTETLTELMSA  197 (201)
Q Consensus       166 ~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~  197 (201)
                      ....  .......+...|......+++...+.+.
T Consensus       864 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  897 (899)
T TIGR02917       864 VNIAPEAAAIRYHLALALLATGRKAEARKELDKL  897 (899)
T ss_pred             HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4321  2334445566666655555555544443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.77  E-value=8.8e-17  Score=136.85  Aligned_cols=150  Identities=14%  Similarity=0.092  Sum_probs=142.7

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      ...|++++|+..|+++++.+|+ +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..
T Consensus       587 ~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        587 YIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3459999999999999999997 899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642         91 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus        91 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      |++++..+|+++.++..+|.++...|   ++++|+..|+++++++|++.......+.+.....++.++......
T Consensus       666 l~~AL~l~P~~~~a~~nLA~al~~lG---d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r  736 (987)
T PRK09782        666 LERAHKGLPDDPALIRQLAYVNQRLD---DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR  736 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999   999999999999999999999999999999999998888665543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.77  E-value=3.2e-16  Score=133.44  Aligned_cols=155  Identities=17%  Similarity=0.071  Sum_probs=102.9

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..+++++...|++..++..++.++...|+++
T Consensus       471 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  550 (899)
T TIGR02917       471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE  550 (899)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHH
Confidence            34445566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +|+..+++++..+|.+...+..++.++...|   ++++|+..+++++...|+++..+..++.++...|++++|.....
T Consensus       551 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  625 (899)
T TIGR02917       551 EAVAWLEKAAELNPQEIEPALALAQYYLGKG---QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK  625 (899)
T ss_pred             HHHHHHHHHHHhCccchhHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6666666666666666666666666666666   66666666666666666666666677777776666666655433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.76  E-value=2.8e-16  Score=118.59  Aligned_cols=149  Identities=13%  Similarity=0.087  Sum_probs=126.8

Q ss_pred             hhhccCHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDE----TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      ....+..+.++..+.+++...|    ..+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|+++
T Consensus        36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~  115 (296)
T PRK11189         36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD  115 (296)
T ss_pred             cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence            3345677889999999997444    346789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      +|+..|+++++++|++..++..+|.+++..|   ++++|++.|+++++.+|+++.....+ .+....++..+|....
T Consensus       116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g---~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l  188 (296)
T PRK11189        116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGG---RYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENL  188 (296)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHH
Confidence            9999999999999999999999999999999   99999999999999999987422211 2233445566664443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=1.5e-17  Score=124.85  Aligned_cols=153  Identities=19%  Similarity=0.162  Sum_probs=116.6

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKID--ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ++..+...++++++...++++....  |.++.++..+|.++...|+.++|+..++++++.+|+++.+...++.++...|+
T Consensus       116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~  195 (280)
T PF13429_consen  116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD  195 (280)
T ss_dssp             --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence            4445677889999999999877654  67888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      ++++...++......|.++..+..+|.++...|   ++++|+.+|+++++.+|+++..+..++.++...|+.++|..-
T Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg---~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~  270 (280)
T PF13429_consen  196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLG---RYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL  270 (280)
T ss_dssp             HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred             hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc---cccccccccccccccccccccccccccccccccccccccccc
Confidence            999888888888888888888899999999999   999999999999999999999999999999999999888543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.76  E-value=7e-16  Score=120.78  Aligned_cols=152  Identities=16%  Similarity=0.063  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH-----HHHHHHHH
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL-----LHQRYADI  111 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~la~~  111 (201)
                      +..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|+..+++++...|.+..     .+..+|.+
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~  189 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            3444444444455555555555555444555555555555555555555555555555555444321     33455666


Q ss_pred             HHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---HhHHHHHHHHHHHHhhhcch
Q psy12642        112 LYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISK---QMMWVSKHLARQYEEQQGNT  188 (201)
Q Consensus       112 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~y~~~~~~~  188 (201)
                      +...+   ++++|+..|+++++.+|++..++..++.++...|+.++|.....+....   ....+...+...|......+
T Consensus       190 ~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  266 (389)
T PRK11788        190 ALARG---DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA  266 (389)
T ss_pred             HHhCC---CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence            66666   7777777777777777777777777777777777777775544433321   11122233445555544444


Q ss_pred             HHH
Q psy12642        189 ETL  191 (201)
Q Consensus       189 ~~~  191 (201)
                      .++
T Consensus       267 ~A~  269 (389)
T PRK11788        267 EGL  269 (389)
T ss_pred             HHH
Confidence            433

>KOG0547|consensus

Probab=99.75  E-value=1.1e-16  Score=122.74  Aligned_cols=154  Identities=14%  Similarity=0.069  Sum_probs=141.2

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      ++-.|++-.|...++.++..+|.++..++.++.+|...++.++-...|+++.+++|+++++|+..|++++-.++|++|+.
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            56689999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      .|++++.++|++...+..++.+.++.+   .+++++..|+.+++..|+.++++...+++....+++++|.....+.+
T Consensus       416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~---k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai  489 (606)
T KOG0547|consen  416 DFQKAISLDPENAYAYIQLCCALYRQH---KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI  489 (606)
T ss_pred             HHHHHhhcChhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            999999999999999999999999999   99999999999999999999999999999999999999977666554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.75  E-value=2.9e-16  Score=111.53  Aligned_cols=149  Identities=16%  Similarity=0.217  Sum_probs=125.4

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      +++-+..|+..|+++......+...  +|..         -+...++.++++..+++.++.+|+++..|..+|.+|...|
T Consensus        19 ~~~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g   87 (198)
T PRK10370         19 VFLCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN   87 (198)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Confidence            3445566889999988755543221  2211         1223677899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHcCCccc--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADIL-YTQGGLEN--IELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      ++++|+..|++++.++|+++..+..+|.++ ...|   +  +++|...++++++.+|+++.+++.+|.++...|++++|.
T Consensus        88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g---~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai  164 (198)
T PRK10370         88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAG---QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI  164 (198)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999986 5666   6  599999999999999999999999999999999999997


Q ss_pred             hhhHHH
Q psy12642        160 AAKKKE  165 (201)
Q Consensus       160 ~~~~~~  165 (201)
                      ...++.
T Consensus       165 ~~~~~a  170 (198)
T PRK10370        165 ELWQKV  170 (198)
T ss_pred             HHHHHH
Confidence            654443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.75  E-value=1.1e-16  Score=108.24  Aligned_cols=110  Identities=8%  Similarity=-0.113  Sum_probs=104.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+...|++++|+..|+.++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|+++
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~  109 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG  109 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQ  115 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~  115 (201)
                      +|+..|++++...|+++..+..+|.+....
T Consensus       110 eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        110 LAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999998876544

>KOG0547|consensus

Probab=99.71  E-value=1.3e-15  Score=116.97  Aligned_cols=157  Identities=18%  Similarity=0.087  Sum_probs=99.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      |-.+..|.+.++.++-...|+++...+|+++.+++.+|++.+-++++++|+..|++++.++|++.-.+..++.+.+++++
T Consensus       364 I~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k  443 (606)
T KOG0547|consen  364 IKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHK  443 (606)
T ss_pred             HHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH
Confidence            34445566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC--------------------------------------CcccHHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQG--------------------------------------GLENIELAI  125 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--------------------------------------~~~~~~~A~  125 (201)
                      ++++...|+.+++..|+.+.++...|+++...+                                      -.+++..|+
T Consensus       444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~  523 (606)
T KOG0547|consen  444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAE  523 (606)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHH
Confidence            666666666666666666666666666655555                                      012455666


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        126 SHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       126 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      ..++++++++|....++..|+++..+.|+.++|+.
T Consensus       524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAie  558 (606)
T KOG0547|consen  524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIE  558 (606)
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            66666666666666666677777777777666644

>PLN02789 farnesyltranstransferase

Probab=99.70  E-value=2.2e-15  Score=114.16  Aligned_cols=141  Identities=13%  Similarity=0.053  Sum_probs=132.9

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH--HH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY--AK   86 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~--~~   86 (201)
                      +...+.+++|+..+.++++.+|.+..+|..++.++..+| ++++++..+++++..+|++..+|...+.+....|+.  ++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            455789999999999999999999999999999999998 689999999999999999999999999999888874  78


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      ++.++++++..+|.|..+|..++.++...+   +++++++++.++++.+|.+..+|...+.+..+++
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~---~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~  190 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLG---GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP  190 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence            899999999999999999999999999999   9999999999999999999999999999988763

>KOG1173|consensus

Probab=99.69  E-value=4.4e-15  Score=115.65  Aligned_cols=127  Identities=13%  Similarity=0.027  Sum_probs=78.7

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      ++..++.|.-.|++.+|..+|.++...+|....+|...|..+...|..++|+..|..+-++.|+.......+|.-|..++
T Consensus       315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~  394 (611)
T KOG1173|consen  315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN  394 (611)
T ss_pred             hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence            45555666666777777777777777777777777777777777776666666666666666555544555555555555


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      +++-|..+|.+++.+.|.+|.+...+|.+.+..+   .+.+|..+|+.++
T Consensus       395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~---~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYE---EYPEALKYFQKAL  441 (611)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHh---hhHHHHHHHHHHH
Confidence            5555555555555555555555444444444444   4444444444444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.69  E-value=1.1e-14  Score=120.18  Aligned_cols=150  Identities=11%  Similarity=-0.032  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         18 EALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        18 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      +++.-........|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            34444444445568889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q psy12642         98 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQM  170 (201)
Q Consensus        98 ~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  170 (201)
                      +|+++..++.+|.++...|   ++++|+..|++++..+|+++.++.+++.++...|+.++|.....+......
T Consensus       150 ~p~~~~~~~~~a~~l~~~g---~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIG---QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhc---chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            9999999999999999999   999999999999999999999999999999999999999877666654333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.69  E-value=5.1e-15  Score=99.15  Aligned_cols=109  Identities=10%  Similarity=0.046  Sum_probs=100.8

Q ss_pred             HHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHH
Q psy12642         26 IIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL  104 (201)
Q Consensus        26 ~l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  104 (201)
                      +.... ++.....+.+|..+...|++++|...|+-+...+|.+...|+.||.++..+|+|++|+..|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34456 77778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642        105 HQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus       105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      +++.|.+++..|   +.+.|++.|+.++.....
T Consensus       106 ~~~ag~c~L~lG---~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363        106 PWAAAECYLACD---NVCYAIKALKAVVRICGE  135 (157)
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHHhcc
Confidence            999999999999   999999999999988743

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.68  E-value=9.2e-15  Score=123.30  Aligned_cols=148  Identities=9%  Similarity=-0.023  Sum_probs=139.7

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      ..-.|++++|++.+.++...+|....++..+|.++...|++++|+..+++++...|.++.++..++.++...|++++|+.
T Consensus        25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~  104 (765)
T PRK10049         25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV  104 (765)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            44579999999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      .+++++..+|+++. +..+|.++...|   ++++|+..++++++..|+++.++..++.++...+..++|...
T Consensus       105 ~l~~~l~~~P~~~~-~~~la~~l~~~g---~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~  172 (765)
T PRK10049        105 KAKQLVSGAPDKAN-LLALAYVYKRAG---RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA  172 (765)
T ss_pred             HHHHHHHhCCCCHH-HHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence            99999999999999 999999999999   999999999999999999999999999999988887777543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.68  E-value=9.9e-15  Score=102.44  Aligned_cols=154  Identities=14%  Similarity=0.060  Sum_probs=142.4

Q ss_pred             chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHH
Q psy12642          2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--FMTDQETWQELCDLYL   79 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~   79 (201)
                      +..+.+..|...|+.+.|.+.|++++..+|++..++...|..++.+|++++|...|++++..  .|.-+..|.++|.|-+
T Consensus        71 a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal  150 (250)
T COG3063          71 AHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL  150 (250)
T ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence            34567777899999999999999999999999999999999999999999999999999973  4556789999999999


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         80 SEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        80 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      ++|+++.|.++|++++..+|+++.....++..++..|   ++-.|..++++.....+-....++..+.+-...|+-.-+
T Consensus       151 ~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~---~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a  226 (250)
T COG3063         151 KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAG---DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA  226 (250)
T ss_pred             hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcc---cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence            9999999999999999999999999999999999999   999999999999988888888899899999999986665

>KOG0553|consensus

Probab=99.68  E-value=1.8e-15  Score=109.94  Aligned_cols=117  Identities=21%  Similarity=0.181  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      +..-|.-+...++|.+|+..|.++|.++|+++..|...+.+|.++|.++.|++..+.++.++|....+|.++|.++..+|
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            44556677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642        117 GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA  156 (201)
Q Consensus       117 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  156 (201)
                         ++.+|++.|++++.++|++...+.+|..+-..+++..
T Consensus       164 ---k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  164 ---KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ---cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence               9999999999999999999988888888888877766

>KOG1173|consensus

Probab=99.67  E-value=3.2e-15  Score=116.46  Aligned_cols=158  Identities=13%  Similarity=-0.013  Sum_probs=130.7

Q ss_pred             chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642          2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE   81 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~   81 (201)
                      ++|.++..+.-.|..++|+..|..+-+.-|........+|.-|..+++++-|.++|.+++.+.|.+|-+...+|.+.+..
T Consensus       348 aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~  427 (611)
T KOG1173|consen  348 AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY  427 (611)
T ss_pred             HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH
Confidence            57788888888888888888888888888877777777888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHhhcC----C---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642         82 GDYAKAVFCMEELFLHH----P---HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~----~---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      +.|.+|..+|+.++..-    +   .-...+.++|.++.+.+   .+++|+..|++++.+.|.++.++..+|.+|..+|+
T Consensus       428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~---~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn  504 (611)
T KOG1173|consen  428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN---KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN  504 (611)
T ss_pred             hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh---hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence            88888888888888321    1   12345788888888888   88888888888888888888888888888888888


Q ss_pred             hhhhhhhh
Q psy12642        155 SAKCSAAK  162 (201)
Q Consensus       155 ~~~a~~~~  162 (201)
                      .++|....
T Consensus       505 ld~Aid~f  512 (611)
T KOG1173|consen  505 LDKAIDHF  512 (611)
T ss_pred             hHHHHHHH
Confidence            88886643

>KOG0553|consensus

Probab=99.67  E-value=1.7e-15  Score=110.13  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=103.3

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      .+++.++|.+|+..|.++++.+|+++..+..++.+|.++|.++.|++.++.++.++|....+|..+|.+|..+|++++|+
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      ..|++++.++|+|...+..+..+-...+
T Consensus       170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  170 EAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             HHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence            9999999999999999988888777666

>KOG0624|consensus

Probab=99.66  E-value=3.6e-14  Score=105.12  Aligned_cols=155  Identities=16%  Similarity=0.093  Sum_probs=137.9

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..++..|++..|+..|..+++.+|++..+++++|.+|+.+|+...|+..+.+++++.|+...+....|.+++++|+++
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele  123 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE  123 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHH---------------HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         86 KAVFCMEELFLHHPHNHLL---------------HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~---------------~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                      +|...|+.++..+|++...               +.....-++..|   +...|+.+..+.+++.|-+...+...+.||.
T Consensus       124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G---D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i  200 (504)
T KOG0624|consen  124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG---DCQNAIEMITHLLEIQPWDASLRQARAKCYI  200 (504)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC---chhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            9999999999999965321               122233345567   8999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhH
Q psy12642        151 QVLTSAKCSAAKK  163 (201)
Q Consensus       151 ~~~~~~~a~~~~~  163 (201)
                      ..|+..+|+..++
T Consensus       201 ~~~e~k~AI~Dlk  213 (504)
T KOG0624|consen  201 AEGEPKKAIHDLK  213 (504)
T ss_pred             hcCcHHHHHHHHH
Confidence            9999999977554

>KOG1174|consensus

Probab=99.66  E-value=1.8e-14  Score=108.84  Aligned_cols=197  Identities=15%  Similarity=0.059  Sum_probs=170.3

Q ss_pred             chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642          2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE   81 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~   81 (201)
                      .+++.+.-++..+++..|+.+-+++++.+|++..++...|.++...++.++|+-.|+.++.+.|.+.+.|..+-.+|+..
T Consensus       302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~  381 (564)
T KOG1174|consen  302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ  381 (564)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence            35666677888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHH-HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         82 GDYAKAVFCMEELFLHHPHNHLLHQRYA-DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      |++.+|...-+.++..-|.+...+..+| .+++...  ---++|.+.++++++++|.+..+-..++..+...|.++.++.
T Consensus       382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp--~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~  459 (564)
T KOG1174|consen  382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP--RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK  459 (564)
T ss_pred             chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc--hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence            9999999999999999999999999887 4443222  157899999999999999999999999999999999999988


Q ss_pred             hhHHHHHHHhHHHH-HHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        161 AKKKEISKQMMWVS-KHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       161 ~~~~~~~~~~~~~~-~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      -..+......+.+. ..|...+...+.-.+++..+..+|.+
T Consensus       460 LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  460 LLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            77777655555444 34666677776666677777777665

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.66  E-value=6.9e-16  Score=115.82  Aligned_cols=128  Identities=23%  Similarity=0.303  Sum_probs=100.1

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +.++..+.+.|++++|+..|+++++.+|+++.++..++.++...|+.+++...+....+..|+++..|..+|.++...|+
T Consensus       150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~  229 (280)
T PF13429_consen  150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR  229 (280)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc
Confidence            44667788999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                      +++|+.+|++++..+|+|+..+..+|.++...|   +.++|..++.++++.
T Consensus       230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g---~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAG---RKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------------
T ss_pred             ccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence            999999999999999999999999999999999   999999999988764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.65  E-value=3e-14  Score=120.20  Aligned_cols=157  Identities=17%  Similarity=0.112  Sum_probs=114.3

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------------C-
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETN----TAARKRKICILKAKNKIPEAIKELTEYLKKFMT-------------D-   67 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------------~-   67 (201)
                      ++..+...|++++|+..|++++..+|.+    ......++.++...|++++|+..++++....|.             + 
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~  357 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD  357 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence            3455667777777777777777766654    344555666677777788887777777776652             1 


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642         68 -QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus        68 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  146 (201)
                       ..++..++.++...|++++|+..+++++...|+++.++..+|.++...|   ++++|+..+++++.++|+++..++.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g---~~~~A~~~l~~al~l~Pd~~~l~~~~a  434 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG---WPRAAENELKKAEVLEPRNINLEVEQA  434 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence             3455667777777888888888888888888888888888888877777   788888888888888888877788888


Q ss_pred             HHHHHhhhhhhhhhhhHHH
Q psy12642        147 LSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       147 ~~~~~~~~~~~a~~~~~~~  165 (201)
                      .++...|++.+|.......
T Consensus       435 ~~al~~~~~~~A~~~~~~l  453 (765)
T PRK10049        435 WTALDLQEWRQMDVLTDDV  453 (765)
T ss_pred             HHHHHhCCHHHHHHHHHHH
Confidence            8888888777775544433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.65  E-value=1.9e-14  Score=102.74  Aligned_cols=152  Identities=15%  Similarity=0.052  Sum_probs=140.1

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A   87 (201)
                      -.+...|+-+.+.....++...+|.+..++..+|...+..|++..|+..+.++....|+++.+|..+|.+|.+.|+++.|
T Consensus        74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~A  153 (257)
T COG5010          74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEA  153 (257)
T ss_pred             HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHH
Confidence            44566788888888888988889999988888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ...|.+++++.|+++.+..++|..+.-.|   +++.|..++..+....+.+..+..+++.+....|+...|....
T Consensus       154 r~ay~qAl~L~~~~p~~~nNlgms~~L~g---d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         154 RRAYRQALELAPNEPSIANNLGMSLLLRG---DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHHHHHhccCCchhhhhHHHHHHHcC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            99999999999999999999999999999   9999999999999988889999999999999999999996533

>PLN02789 farnesyltranstransferase

Probab=99.65  E-value=1.8e-14  Score=109.20  Aligned_cols=144  Identities=13%  Similarity=0.072  Sum_probs=128.9

Q ss_pred             Hhhhhcc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          8 IGCFHFF-RYEEALEHLETIIKIDETNTAARKRKICILKAKNKI--PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         8 ~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      ..+...| ++++++.+++++++.+|.+..+|..++.++...|+.  ++++.++.++++.+|.+..+|...+.++...|++
T Consensus        79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~  158 (320)
T PLN02789         79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW  158 (320)
T ss_pred             HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence            3455566 689999999999999999999999999999888874  7789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc---CCc-ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQ---GGL-ENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      ++++.++.++|..+|.|..+|..++.+....   ++. ...++++.+..+++..+|++..+|.+++.++..
T Consensus       159 ~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        159 EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             HHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            9999999999999999999999999988766   211 123678999999999999999999999999987

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.64  E-value=2.3e-14  Score=118.25  Aligned_cols=136  Identities=16%  Similarity=0.077  Sum_probs=128.0

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+......|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++...|+++.+.+.+|.++...|+
T Consensus        90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~  169 (694)
T PRK15179         90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ  169 (694)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Confidence            44556677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                      +++|+..|++++..+|+++.++..+|.++...|   +.++|...|+++++...+-.+.+
T Consensus       170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G---~~~~A~~~~~~a~~~~~~~~~~~  225 (694)
T PRK15179        170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRG---ALWRARDVLQAGLDAIGDGARKL  225 (694)
T ss_pred             hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhCcchHHH
Confidence            999999999999999999999999999999999   99999999999999876655543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.64  E-value=5.5e-14  Score=102.88  Aligned_cols=161  Identities=14%  Similarity=0.041  Sum_probs=134.3

Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH--
Q psy12642         29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL--  103 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--  103 (201)
                      .++..+..++.+|..+...|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..+++++..+|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4466789999999999999999999999999999999886   57899999999999999999999999999998776  


Q ss_pred             -HHHHHHHHHHHc--------CCcccHHHHHHHHHHHHcCCcccHHHH-----------------HHHHHHHHHhhhhhh
Q psy12642        104 -LHQRYADILYTQ--------GGLENIELAISHYLMAINLNEKNIRAL-----------------YGLALSCHQVLTSAK  157 (201)
Q Consensus       104 -~~~~la~~~~~~--------~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~  157 (201)
                       +++.+|.++...        +   ++++|++.|++++..+|++..++                 ..++.+|...|++.+
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~  184 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQT---AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA  184 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHH---HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence             689999999876        6   89999999999999999876543                 356788888899999


Q ss_pred             hhhhhHHHHHHH-----hHHHHHHHHHHHHhhhcchHHHH
Q psy12642        158 CSAAKKKEISKQ-----MMWVSKHLARQYEEQQGNTETLT  192 (201)
Q Consensus       158 a~~~~~~~~~~~-----~~~~~~~l~~~y~~~~~~~~~~~  192 (201)
                      |...........     ...+...+...|......++++.
T Consensus       185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~  224 (235)
T TIGR03302       185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD  224 (235)
T ss_pred             HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            977666555432     23455667777887777666554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.64  E-value=2.2e-14  Score=110.78  Aligned_cols=114  Identities=11%  Similarity=0.012  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      +...|...+..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.+++..|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            34557777778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642        117 GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus       117 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                         ++++|+..|+++++++|+++.+...++.|...+.
T Consensus        85 ---~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         85 ---EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence               8888888888888888888888777777766664

>KOG2076|consensus

Probab=99.63  E-value=2e-13  Score=111.43  Aligned_cols=153  Identities=21%  Similarity=0.196  Sum_probs=136.6

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +.-++..|++++|...+..++..+|.++.+|+.+|.+|-.+|+.+++...+-.+-.++|.+.+.|..++.....+|++.+
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence            33466779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-----cHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-----NIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      |.-+|.++|+.+|.++......+.++.++|   +...|+..|.+.++.+|.     .....+..+..+...++-+.|...
T Consensus       226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G---~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  226 ARYCYSRAIQANPSNWELIYERSSLYQKTG---DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHhC---hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999999999999999999999999   999999999999999992     122345556677777766666443


Q ss_pred             h
Q psy12642        162 K  162 (201)
Q Consensus       162 ~  162 (201)
                      .
T Consensus       303 l  303 (895)
T KOG2076|consen  303 L  303 (895)
T ss_pred             H
Confidence            3

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.61  E-value=4.2e-14  Score=109.22  Aligned_cols=111  Identities=10%  Similarity=0.026  Sum_probs=104.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      -+..++..|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++...|+++
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence            45668889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      +|+..|++++.++|+++.+...++.+.....
T Consensus        88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         88 TAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888865553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.61  E-value=4.3e-14  Score=94.64  Aligned_cols=102  Identities=15%  Similarity=0.085  Sum_probs=96.7

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +.++..++..|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..++.+|.++...|+
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  100 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE  100 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLH  105 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~  105 (201)
                      +++|+..+++++..+|++....
T Consensus       101 ~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552       101 PESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHHHHHHHhccccchHH
Confidence            9999999999999999887644

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=6.8e-13  Score=104.26  Aligned_cols=184  Identities=9%  Similarity=-0.035  Sum_probs=116.2

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK---------------------------   62 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------------------------   62 (201)
                      +...|++++|+..+++..+.+|+++.++..++.+|...|++++|+..+.+..+                           
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455566666666665555566655555555555555555555533333221                           


Q ss_pred             ---------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642         63 ---------------KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH  127 (201)
Q Consensus        63 ---------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~  127 (201)
                                     ..|+++.+...++..+...|+.++|...++++++ .|.++.....++.+  ..+   +.+++++.
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~---~~~~al~~  316 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTN---NPEQLEKV  316 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCC---ChHHHHHH
Confidence                           1122344444455555555566666655555555 23334333333333  224   78888888


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhHHHH-HHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642        128 YLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVS-KHLARQYEEQQGNTETLTELMSALQ  199 (201)
Q Consensus       128 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~l~~~y~~~~~~~~~~~~~~~~~~  199 (201)
                      .++.++..|+++..+..+|.++...+++.+|....++....-..... ..+...+.+....+++.+.+.++|.
T Consensus       317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            88889999999999999999999999999998877666543333322 4677888888888888888877764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.59  E-value=3.5e-13  Score=103.78  Aligned_cols=129  Identities=16%  Similarity=0.097  Sum_probs=120.9

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642         31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD  110 (201)
Q Consensus        31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  110 (201)
                      |....+++..+..++..|+++.|+..+...+...|+|+..+...+.++...|+.++|.+.+++++..+|+.+....++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642        111 ILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ++...|   ++.+|+..++..+..+|+++..|..|++.|..+|+..++....
T Consensus       383 all~~g---~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~  431 (484)
T COG4783         383 ALLKGG---KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR  431 (484)
T ss_pred             HHHhcC---ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence            999999   9999999999999999999999999999999999988885543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.59  E-value=4.4e-13  Score=112.58  Aligned_cols=157  Identities=11%  Similarity=-0.004  Sum_probs=128.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...++..++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|........+|.++..+|+
T Consensus        38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence            44567788999999999999999999999965544888888899999999999999994334444555555889999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +++|+..|+++++.+|+++.++..++.++...+   +.++|+..++++...+|.+... ..++.++...++..+|....+
T Consensus       118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~---q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~e  193 (822)
T PRK14574        118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAG---RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASS  193 (822)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHH
Confidence            999999999999999999999999999999999   9999999999999999985554 555555555555555544443


Q ss_pred             H
Q psy12642        164 K  164 (201)
Q Consensus       164 ~  164 (201)
                      +
T Consensus       194 k  194 (822)
T PRK14574        194 E  194 (822)
T ss_pred             H
Confidence            3

>KOG2003|consensus

Probab=99.58  E-value=1.8e-13  Score=104.92  Aligned_cols=153  Identities=16%  Similarity=0.109  Sum_probs=127.5

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      +..|++++|.++|+.++..+.....+++.+|..+..+|+.++|+.+|-+...+--++..++..++.+|..+.+..+|+++
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            45688888888888888888888888888888888888888888888887777777888888888888888888888888


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHcCCc-------------------------------ccHHHHHHHHHHHHcCCcccH
Q psy12642         91 MEELFLHHPHNHLLHQRYADILYTQGGL-------------------------------ENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        91 ~~~al~~~~~~~~~~~~la~~~~~~~~~-------------------------------~~~~~A~~~~~~al~~~p~~~  139 (201)
                      +-++..+-|++|..+..+|..|-..|+.                               .-+++|+.+|+++.-+.|+..
T Consensus       581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~  660 (840)
T KOG2003|consen  581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS  660 (840)
T ss_pred             HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence            8888888888888888888877766621                               137899999999999999988


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642        140 RALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       140 ~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      .-...++.|+++.|++.+|-...+
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk  684 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYK  684 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHH
Confidence            888899999999999999966443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=9.3e-13  Score=96.82  Aligned_cols=155  Identities=13%  Similarity=0.040  Sum_probs=125.6

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHh
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-----QETWQELCDLYLS   80 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~   80 (201)
                      .+..|+..|-+++|...|....+....-..+...+..+|-...+|++|++..++..+..|..     ..++..++..+..
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~  192 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA  192 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence            44557778888888888888877666667888888888888888888888888888877765     4467778888888


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHHhhhhhhhh
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-IRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      ..+++.|+..+.++++.+|....+-..+|.+....|   +|+.|++.++.+++.+|+. +.+.-.|..||.++|+..+..
T Consensus       193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKG---DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc---chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            888888888888888888888888888888888888   8888888888888888875 457778888888888887775


Q ss_pred             hhhH
Q psy12642        160 AAKK  163 (201)
Q Consensus       160 ~~~~  163 (201)
                      .-..
T Consensus       270 ~fL~  273 (389)
T COG2956         270 NFLR  273 (389)
T ss_pred             HHHH
Confidence            5433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.58  E-value=1.2e-13  Score=92.59  Aligned_cols=97  Identities=11%  Similarity=0.018  Sum_probs=92.0

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      .++..++..|++++|...|+.+...+|.+...|+.+|.++..+|++++|+..|..++.++|+++..++.+|.+++..|+.
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCC
Q psy12642         85 AKAVFCMEELFLHHPHN  101 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~  101 (201)
                      +.|.+.|+.++.....+
T Consensus       120 ~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        120 CYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            99999999999887443

>KOG0550|consensus

Probab=99.58  E-value=1e-13  Score=104.65  Aligned_cols=157  Identities=22%  Similarity=0.181  Sum_probs=143.8

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------------HHHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE------------TWQEL   74 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~l   74 (201)
                      +.++.-.|++++|...-..+++.++.+..+++..|.++...++.+.|+.+++++++++|+...            .|..-
T Consensus       176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~  255 (486)
T KOG0550|consen  176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER  255 (486)
T ss_pred             hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence            345677899999999999999999999999999999999999999999999999999998743            56677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLHHPHN----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                      |+-.++.|++.+|.++|..+|.++|++    ..++.+++.+....|   +..+|+...+.++.++|....++...+.|+.
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg---rl~eaisdc~~Al~iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG---RLREAISDCNEALKIDSSYIKALLRRANCHL  332 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC---CchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence            888999999999999999999999976    446888899999999   9999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhHHHH
Q psy12642        151 QVLTSAKCSAAKKKEI  166 (201)
Q Consensus       151 ~~~~~~~a~~~~~~~~  166 (201)
                      .+++++.|....++.+
T Consensus       333 ~le~~e~AV~d~~~a~  348 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAM  348 (486)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988766554

>KOG3060|consensus

Probab=99.57  E-value=1.4e-12  Score=92.98  Aligned_cols=149  Identities=16%  Similarity=0.084  Sum_probs=139.0

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      ++.....|+.+-|..++++....-|.+..+-...|..+-..|++++|+++|+..+..+|.|..++-..-.+...+|+.-+
T Consensus        59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~  138 (289)
T KOG3060|consen   59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLE  138 (289)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHH
Confidence            35566789999999999999999999999999999999999999999999999999999999888887778889999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      |++.+...+...+.|+.+|..++.+|...+   ++++|.-++++.+-+.|.++..+..++.++.-+|..++-
T Consensus       139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~---~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~  207 (289)
T KOG3060|consen  139 AIKELNEYLDKFMNDQEAWHELAEIYLSEG---DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL  207 (289)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhHh---HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999999999   999999999999999999999999999999988875444

>KOG0548|consensus

Probab=99.57  E-value=3.5e-13  Score=104.66  Aligned_cols=141  Identities=21%  Similarity=0.215  Sum_probs=126.1

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcc--------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDET--------------------------NTAARKRKICILKAKNKIPEAIKELTEYLK   62 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   62 (201)
                      .+.+.++++.|+.+|++++....+                          -..--...|..++..|+|..|+..|.++|.
T Consensus       307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk  386 (539)
T KOG0548|consen  307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK  386 (539)
T ss_pred             hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            466678888888888888775422                          223344568889999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642         63 KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                      .+|+|+..|.+.|.||.+.|++..|+...+.+++++|+...++++-|.+++.+.   +|++|++.|+.+++.+|++.++.
T Consensus       387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk---~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK---EYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCchhHHHH
Confidence            999999999999999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy12642        143 YGLALSCHQV  152 (201)
Q Consensus       143 ~~l~~~~~~~  152 (201)
                      ..+..|....
T Consensus       464 ~~~~rc~~a~  473 (539)
T KOG0548|consen  464 DGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.57  E-value=3.4e-13  Score=104.42  Aligned_cols=158  Identities=14%  Similarity=-0.010  Sum_probs=126.8

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK----IPEAIKELTEYLKKFMTDQETWQELCDLYL   79 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~   79 (201)
                      .+.+..+...|++++|...++++++.+|++..++.. +..+...|+    ...+...+......+|....+...+|.++.
T Consensus        47 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~  125 (355)
T cd05804          47 HVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE  125 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence            344566778899999999999999999999877664 444444444    444444444433456667777788899999


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH----HHHHHHHHHHHHhhhh
Q psy12642         80 SEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI----RALYGLALSCHQVLTS  155 (201)
Q Consensus        80 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~  155 (201)
                      .+|++++|...+++++...|+++..+..+|.++...|   ++++|+.++++++...|.++    ..++.++.++...|+.
T Consensus       126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g---~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG---RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999999999999999999999   99999999999999887432    3567899999999999


Q ss_pred             hhhhhhhHHH
Q psy12642        156 AKCSAAKKKE  165 (201)
Q Consensus       156 ~~a~~~~~~~  165 (201)
                      ++|.......
T Consensus       203 ~~A~~~~~~~  212 (355)
T cd05804         203 EAALAIYDTH  212 (355)
T ss_pred             HHHHHHHHHH
Confidence            9997755543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.56  E-value=7.4e-13  Score=102.04  Aligned_cols=144  Identities=20%  Similarity=0.133  Sum_probs=128.2

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      -.++..+..|++++|+..++..+...|+++..+...+.+++..|+.++|.+.+++++..+|+.+..+..+|+.+++.|++
T Consensus       311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~  390 (484)
T COG4783         311 GRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP  390 (484)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence            35667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      .+|+..++..+..+|+++..|..+++.+-..|   +..++...+........+...+...+.....+
T Consensus       391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g---~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELG---NRAEALLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC---chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999   88888877777777666654444444444333

>KOG1129|consensus

Probab=99.56  E-value=2.3e-14  Score=105.56  Aligned_cols=148  Identities=14%  Similarity=0.060  Sum_probs=125.5

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      +...+++++|.++|+.+++.+|.++.+.-.+|.-|+..++++-|+.+|.+.++..-.+++.+.++|.|++..++++-++.
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence            45567888888888888888888888888888888888888888888888888888888888889999998899999999


Q ss_pred             HHHHHhhcCC---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         90 CMEELFLHHP---HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        90 ~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      .|++++..-.   ....+|+++|.+....|   ++..|.++|+-++..+|++..++.+|+..-.+.|+...|+.
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iG---D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars  450 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIG---DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS  450 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEecc---chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence            9998886532   34568999999888889   99999999999999999999999999999999998888854

>KOG1129|consensus

Probab=99.56  E-value=1.4e-13  Score=101.51  Aligned_cols=152  Identities=12%  Similarity=0.032  Sum_probs=139.3

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+.+|...|.+.+|...++..++..| .+..+..++.+|.+..++..|+..+.+.++.+|.+.......+.++..+++++
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~  307 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE  307 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence            45678999999999999999998776 46788889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      +|++.|+.+++.+|.|.++...+|..|+..+   +.+-|+.+|++.+++.-.+++.+.+++.|+.--++++-....
T Consensus       308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~---~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  308 DALQLYKLVLKLHPINVEAIACIAVGYFYDN---NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHHHHHHHHHhcCCccceeeeeeeeccccCC---ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence            9999999999999999999999999999999   999999999999999999999999999999988887776443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.55  E-value=8.3e-13  Score=94.49  Aligned_cols=149  Identities=12%  Similarity=0.084  Sum_probs=136.8

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCME   92 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   92 (201)
                      ..+...+...+-.....+|.+..+ ..++..+...|+-+.+.....++...+|.+..+...+|......|++..|+..++
T Consensus        46 ~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~r  124 (257)
T COG5010          46 MRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR  124 (257)
T ss_pred             HHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            344455777777778899999999 8899999999999999999999999999999999889999999999999999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642         93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus        93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      ++....|+|+.+|..+|.+|...|   ++++|...|.+++++.|+++.+..+++..+.-.|+.+.|.......
T Consensus       125 kA~~l~p~d~~~~~~lgaaldq~G---r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a  194 (257)
T COG5010         125 KAARLAPTDWEAWNLLGAALDQLG---RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA  194 (257)
T ss_pred             HHhccCCCChhhhhHHHHHHHHcc---ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999   9999999999999999999999999999999999999997755433

>KOG2002|consensus

Probab=99.53  E-value=1.8e-12  Score=106.79  Aligned_cols=134  Identities=15%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642         17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEE   93 (201)
Q Consensus        17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~   93 (201)
                      ..++..+..+...+|.+|.++..++.-++..|+++.+..+...++...-..   .+.++.+|.+|..+|+|++|..+|.+
T Consensus       253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~  332 (1018)
T KOG2002|consen  253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME  332 (1018)
T ss_pred             HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            333333333333344444444444444455555555555555554433221   23466777888888888888888888


Q ss_pred             HhhcCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         94 LFLHHPHN-HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        94 al~~~~~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      +++.+|++ ...++.+|+.+...|   +++.|+.+|+++++..|++.....-||..|...+
T Consensus       333 s~k~~~d~~~l~~~GlgQm~i~~~---dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  333 SLKADNDNFVLPLVGLGQMYIKRG---DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHccCCCCccccccchhHHHHHhc---hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            88888777 667778888888888   8888888888888888888888888888887775

>TIGR00540 hemY_coli hemY protein

Probab=99.52  E-value=6.7e-12  Score=99.04  Aligned_cols=190  Identities=7%  Similarity=-0.111  Sum_probs=142.3

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK----------------------   63 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------------   63 (201)
                      ++..+...|++++|...++..++..|+++.++..++.++...|++++|.+.+.+..+.                      
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~  238 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE  238 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            4555677899999999999999999999999999999999999998777766654422                      


Q ss_pred             ----------------cC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH--HHHHHHHHHcCCcccH
Q psy12642         64 ----------------FM----TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH--QRYADILYTQGGLENI  121 (201)
Q Consensus        64 ----------------~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~~~~~~~  121 (201)
                                      .|    +++.++..++..+...|++++|...++++++..|++....  ..........+   +.
T Consensus       239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~---~~  315 (409)
T TIGR00540       239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE---DN  315 (409)
T ss_pred             HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC---Ch
Confidence                            23    3566777788889999999999999999999999887532  22222223345   78


Q ss_pred             HHHHHHHHHHHcCCcccH--HHHHHHHHHHHHhhhhhhhhhhhHH--HHH-HHhHHHHHHHHHHHHhhhcchHHHHHHHh
Q psy12642        122 ELAISHYLMAINLNEKNI--RALYGLALSCHQVLTSAKCSAAKKK--EIS-KQMMWVSKHLARQYEEQQGNTETLTELMS  196 (201)
Q Consensus       122 ~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~  196 (201)
                      +.+++.++++++..|+++  ..+..+|.++.+.|++++|....++  ... .-.......+...+.+....+.+...+-+
T Consensus       316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            899999999999999999  8888999999999999999776663  221 11112233677777777666665555544


Q ss_pred             hc
Q psy12642        197 AL  198 (201)
Q Consensus       197 ~~  198 (201)
                      ++
T Consensus       396 ~l  397 (409)
T TIGR00540       396 SL  397 (409)
T ss_pred             HH
Confidence            43

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.52  E-value=1.3e-12  Score=85.31  Aligned_cols=105  Identities=18%  Similarity=0.179  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRY  108 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l  108 (201)
                      ..++.+|..+...|++++|+..+.+++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            466778888888888888888888888888776   4677888888888888888888888888887775   5678888


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642        109 ADILYTQGGLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus       109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                      |.++...+   ++++|+.++.+++...|+++.+.
T Consensus        83 ~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        83 GMSLQELG---DKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHhC---ChHHHHHHHHHHHHHCcCChhHH
Confidence            88888888   88888888888888888876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1156|consensus

Probab=99.51  E-value=9.1e-13  Score=104.42  Aligned_cols=156  Identities=15%  Similarity=0.155  Sum_probs=148.3

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +--++.++..++|...+...+.+++..|.++..+...|..+..+|+.++|......+++.++.+..+|.-+|.++...++
T Consensus        11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~   90 (700)
T KOG1156|consen   11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK   90 (700)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh
Confidence            33567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      |++|+++|..|+..+|+|...+..++.....++   +++.....-.+.++..|.....|...+..+.-.|++..|....
T Consensus        91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR---d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il  166 (700)
T KOG1156|consen   91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR---DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL  166 (700)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999   9999999999999999999999999999999999999996533

>KOG2002|consensus

Probab=99.51  E-value=3e-12  Score=105.44  Aligned_cols=185  Identities=15%  Similarity=0.070  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-QETWQELCDLYLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a   94 (201)
                      ++.|...|.-++...|.+..++...|.+.+..++|..|+.+|.+++..+|.. ++....+|.|+.++|..+.|+..|+++
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra  225 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA  225 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence            4788888888888888888888888888888888888888888888888766 456666788888888888888888888


Q ss_pred             hhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH-----HHHH
Q psy12642         95 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE-----ISKQ  169 (201)
Q Consensus        95 l~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~  169 (201)
                      ++++|.++.++..+|.+.....+...+..++..+.++...+|.+|.++..|+.-+...|++..+..-..-.     ....
T Consensus       226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~  305 (1018)
T KOG2002|consen  226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI  305 (1018)
T ss_pred             HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence            88888888888888887776665556788888888888888888888888888888888888774422211     1122


Q ss_pred             hHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        170 MMWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       170 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      ...+-=.+.+.|-.+.+.+.+..-|++++++
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~  336 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA  336 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence            3333334666676766667777777777664

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.51  E-value=7.6e-12  Score=91.64  Aligned_cols=152  Identities=11%  Similarity=0.027  Sum_probs=124.0

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAAR---KRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYL   79 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~---~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~   79 (201)
                      -+..++..|+|++|++.|++++...|..+.+.   +.+|.++...+++++|+..+++.++.+|++   +.+++.+|.++.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            45667788999999999999999999887554   788999999999999999999999998887   567888887764


Q ss_pred             hcC---------------C---HHHHHHHHHHHhhcCCCCHHH-----------------HHHHHHHHHHcCCcccHHHH
Q psy12642         80 SEG---------------D---YAKAVFCMEELFLHHPHNHLL-----------------HQRYADILYTQGGLENIELA  124 (201)
Q Consensus        80 ~~~---------------~---~~~A~~~~~~al~~~~~~~~~-----------------~~~la~~~~~~~~~~~~~~A  124 (201)
                      ..+               +   ..+|+..|++.+...|++...                 -+..|..|.+.|   .+..|
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~---~y~AA  194 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG---AYVAV  194 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---chHHH
Confidence            443               1   357889999999999987532                 245677888888   99999


Q ss_pred             HHHHHHHHcCCcc---cHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        125 ISHYLMAINLNEK---NIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       125 ~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      +.-++.+++..|+   .+++++.+...|..+|..++|..
T Consensus       195 ~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~  233 (243)
T PRK10866        195 VNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK  233 (243)
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence            9999999998886   45788999999999998888733

>KOG1840|consensus

Probab=99.50  E-value=3.7e-12  Score=101.12  Aligned_cols=182  Identities=19%  Similarity=0.091  Sum_probs=144.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-----MTD---QE   69 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~---~~   69 (201)
                      .+..|..+|+|+.|+..++.+++.        +|.-......+|.+|..++++.+|+.+|++++.+.     +++   ..
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            456788999999999999999998        56555666679999999999999999999998742     333   56


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc-----
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHH--------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-----  136 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-----  136 (201)
                      ++..||.+|...|++++|..++++++.+.        |.-...+..++.++..++   ++++|+.++++++++.-     
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~---~~Eea~~l~q~al~i~~~~~g~  361 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN---EYEEAKKLLQKALKIYLDAPGE  361 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHhhccc
Confidence            78889999999999999999999998753        223446788888888999   99999999999887542     


Q ss_pred             ---ccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----------hHHHHHHHHHHHHhhhcchHH
Q psy12642        137 ---KNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ----------MMWVSKHLARQYEEQQGNTET  190 (201)
Q Consensus       137 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~~l~~~y~~~~~~~~~  190 (201)
                         .-+....+++.+|..+|++.+|..-.++.++..          ......+|...|.+.++..++
T Consensus       362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a  428 (508)
T KOG1840|consen  362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA  428 (508)
T ss_pred             cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence               335678899999999999999977666554322          234455677777777776653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=4e-12  Score=93.10  Aligned_cols=120  Identities=17%  Similarity=0.135  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---HHHHHHHHH
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD---YAKAVFCME   92 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~   92 (201)
                      .+..+.-++.-+..+|++..-|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.+++.+.+   ..++...|+
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            45555556666666666666666666666666666666666666666666666666666665554332   355666666


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642         93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus        93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      +++..+|.|..+.+.+|..++..|   +|.+|+..++..+...|.+
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g---~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQG---DYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcCCCC
Confidence            666666666666666666666666   6666666666666666543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.50  E-value=4.4e-12  Score=106.68  Aligned_cols=152  Identities=11%  Similarity=-0.051  Sum_probs=129.5

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..+...|++++|+.++++++...|........+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++
T Consensus        75 l~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e  154 (822)
T PRK14574         75 LQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV  154 (822)
T ss_pred             HHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH
Confidence            34455679999999999999944455555555558899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      |+..+++++..+|.+... ..++.++...+   +..+|+..++++++.+|++...+..+..+....|-...|....
T Consensus       155 Al~~l~~l~~~dp~~~~~-l~layL~~~~~---~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~  226 (822)
T PRK14574        155 VLKQATELAERDPTVQNY-MTLSYLNRATD---RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA  226 (822)
T ss_pred             HHHHHHHhcccCcchHHH-HHHHHHHHhcc---hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            999999999999996655 55555555556   6777999999999999999999999999999999888875533

>KOG1125|consensus

Probab=99.50  E-value=4.2e-13  Score=105.06  Aligned_cols=138  Identities=12%  Similarity=0.090  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642         16 YEEALEHLETIIKIDE--TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEE   93 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   93 (201)
                      +..-.+.|-.+....|  .++.+...+|.+|...|+|++|+.+|+.++...|+|...|..||-.+....+.++|+..|++
T Consensus       410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r  489 (579)
T KOG1125|consen  410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR  489 (579)
T ss_pred             HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence            4455667777777788  78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc----------cHHHHHHHHHHHHHhhhhh
Q psy12642         94 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK----------NIRALYGLALSCHQVLTSA  156 (201)
Q Consensus        94 al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~~~  156 (201)
                      |+++.|....+++++|..+...|   .|++|+++|..||.+.+.          +..+|-.|-.+...+++.+
T Consensus       490 ALqLqP~yVR~RyNlgIS~mNlG---~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  490 ALQLQPGYVRVRYNLGISCMNLG---AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             HHhcCCCeeeeehhhhhhhhhhh---hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            99999999999999999999999   999999999999988764          1246777777777777665

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.49  E-value=1.1e-12  Score=81.24  Aligned_cols=99  Identities=19%  Similarity=0.189  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642         36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ  115 (201)
Q Consensus        36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  115 (201)
                      +++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+...+..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcccHHHHHHHHHHHHcCCcc
Q psy12642        116 GGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus       116 ~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      +   +++.|...+.++++.+|.
T Consensus        82 ~---~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 G---KYEEALEAYEKALELDPN  100 (100)
T ss_pred             H---hHHHHHHHHHHHHccCCC
Confidence            8   888888888888877763

>KOG2076|consensus

Probab=99.49  E-value=8.7e-12  Score=102.07  Aligned_cols=129  Identities=22%  Similarity=0.160  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY  113 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  113 (201)
                      ...+...|...+..|++++|.+++.++|+.+|.++.+|+.||.+|..+|+.+++..++-.|-.++|.++..|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            35566677788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        114 TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       114 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      ..|   +++.|+-+|.+|++.+|.+.+..+..+.+|.++|+..+|.....+.
T Consensus       219 ~~~---~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l  267 (895)
T KOG2076|consen  219 QLG---NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL  267 (895)
T ss_pred             hcc---cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            999   9999999999999999999999999999999999999997655443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.49  E-value=4.2e-12  Score=88.20  Aligned_cols=127  Identities=17%  Similarity=0.101  Sum_probs=106.4

Q ss_pred             hhhccCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETN--TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDY   84 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~   84 (201)
                      ++-...|..+...+...+..++.+  ..++..+|.++...|++++|+..+.+++...|+.   +.++..+|.++...|++
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033          9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH   88 (168)
T ss_pred             cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence            344566778888887777666555  5777999999999999999999999999887764   45899999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHH-------HcCCcccHH-------HHHHHHHHHHcCCcccH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILY-------TQGGLENIE-------LAISHYLMAINLNEKNI  139 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~-------~~~~~~~~~-------~A~~~~~~al~~~p~~~  139 (201)
                      ++|+..+++++.++|.+...+..+|.++.       ..|   +++       +|+.+|++++..+|++.
T Consensus        89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g---~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG---DSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc---cHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999998888       666   655       66777777888888644

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.49  E-value=6e-12  Score=90.01  Aligned_cols=150  Identities=19%  Similarity=0.179  Sum_probs=121.2

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYL   79 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~   79 (201)
                      .+..++..|+|.+|+..|++++...|.+   +.+.+.+|.++...|+++.|+..+++.++.+|++   +.+++.+|.+++
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            4567889999999999999999988765   4888999999999999999999999999999987   468888888876


Q ss_pred             hcC-----------CHHHHHHHHHHHhhcCCCCHHH-----------------HHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         80 SEG-----------DYAKAVFCMEELFLHHPHNHLL-----------------HQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        80 ~~~-----------~~~~A~~~~~~al~~~~~~~~~-----------------~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      .+.           ...+|+..|+..+...|++..+                 -+.+|..|+..|   .+..|+..++.+
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~---~y~aA~~r~~~v  167 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG---KYKAAIIRFQYV  167 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----HHHHHHHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHH
Confidence            543           3458999999999999987542                 245688889999   999999999999


Q ss_pred             HcCCccc---HHHHHHHHHHHHHhhhhhhh
Q psy12642        132 INLNEKN---IRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       132 l~~~p~~---~~~~~~l~~~~~~~~~~~~a  158 (201)
                      ++..|+.   ..++..++.+|.++|....+
T Consensus       168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  168 IENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            9999975   46889999999999987744

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.48  E-value=5.4e-12  Score=85.54  Aligned_cols=121  Identities=17%  Similarity=0.162  Sum_probs=97.1

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSE   81 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~   81 (201)
                      +.....++...+...++.+...+|+.   ..+.+.+|.++...|++++|...|+.++...|+.   +.+...++.++..+
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~   98 (145)
T PF09976_consen   19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ   98 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence            33445788888888888888888887   4677778888889999999999999988877655   44677788889999


Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      |++++|+..++. +...+..+..+..+|.++...|   ++++|+..|++++
T Consensus        99 ~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g---~~~~A~~~y~~Al  145 (145)
T PF09976_consen   99 GQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG---DYDEARAAYQKAL  145 (145)
T ss_pred             CCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC---CHHHHHHHHHHhC
Confidence            999999988866 3445556778888899999999   8999999988874

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=2.5e-11  Score=89.46  Aligned_cols=181  Identities=15%  Similarity=0.104  Sum_probs=141.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----------------
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-----------------   67 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------   67 (201)
                      +-.+-+.-.++.++|++.|-.+++.+|....++..+|.+|...|..+.|+.+-+..++. |+-                 
T Consensus        40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym  118 (389)
T COG2956          40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYM  118 (389)
T ss_pred             HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHH
Confidence            33455666788888888888888888888888888888888888888888776664432 211                 


Q ss_pred             ----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHcCCccc
Q psy12642         68 ----------------------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH-----LLHQRYADILYTQGGLEN  120 (201)
Q Consensus        68 ----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~  120 (201)
                                            ..+...+..+|....+|++|+.+-++..++.+...     ..++-++..+....   +
T Consensus       119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~---~  195 (389)
T COG2956         119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS---D  195 (389)
T ss_pred             HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh---h
Confidence                                  23455566677777788888888888888877653     35666777777777   9


Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH---HHHHhHHHHHHHHHHHHhhhcchH
Q psy12642        121 IELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE---ISKQMMWVSKHLARQYEEQQGNTE  189 (201)
Q Consensus       121 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~y~~~~~~~~  189 (201)
                      .+.|+..+.++++.+|++.++-..+|.+....|++.+|......-   ..++...+...|.+.|.+..+..+
T Consensus       196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            999999999999999999999999999999999999997755433   346777888889999998887766

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2e-12  Score=94.60  Aligned_cols=111  Identities=25%  Similarity=0.276  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642         50 IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYL  129 (201)
Q Consensus        50 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~  129 (201)
                      .+..+.-++.-+..+|+|.+-|..||.+|+.+|++..|...|.+++++.|+|+..+..+|.+++...+.....++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            45666677888889999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             HHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        130 MAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       130 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      +++.++|+++++.+.|+..+...|++.+|..
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~  248 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAA  248 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence            9999999999999999999999999999955

>KOG0495|consensus

Probab=99.47  E-value=1.1e-11  Score=98.74  Aligned_cols=156  Identities=15%  Similarity=0.018  Sum_probs=87.7

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHH---------------------------------HHcCCHHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICIL---------------------------------KAKNKIPEAI   54 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~---------------------------------~~~~~~~~A~   54 (201)
                      ......|+...|..++.++++.+|++..+|+.-..+.                                 ..+++.++|+
T Consensus       592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~  671 (913)
T KOG0495|consen  592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEAL  671 (913)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHH
Confidence            3345556666666666666666666655554444444                                 4445555555


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642         55 KELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus        55 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                      .+++++++.+|+...+|..+|+++..+++.+.|...|...++..|..+.+|..++.+--..|   +...|...++++.-.
T Consensus       672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~---~~~rAR~ildrarlk  748 (913)
T KOG0495|consen  672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG---QLVRARSILDRARLK  748 (913)
T ss_pred             HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc---chhhHHHHHHHHHhc
Confidence            55555555555555555555555555555555555555555555555555555555555555   555555555555555


Q ss_pred             CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       135 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      +|.+...|.....+-.+.|+.+.|..-+.+..
T Consensus       749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL  780 (913)
T KOG0495|consen  749 NPKNALLWLESIRMELRAGNKEQAELLMAKAL  780 (913)
T ss_pred             CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555555555555555555555544433333

>KOG0548|consensus

Probab=99.47  E-value=1.6e-11  Score=95.61  Aligned_cols=145  Identities=19%  Similarity=0.123  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------------------------CCCHH
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------------------------MTDQE   69 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------p~~~~   69 (201)
                      .+.|++.-.........-..+..++|..+...++++.++.+|.+++...                          |.-..
T Consensus       280 c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~  359 (539)
T KOG0548|consen  280 CEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAE  359 (539)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHH
Confidence            3334443333333222234445557778888888888888888876532                          22223


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC  149 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  149 (201)
                      -...-|..++..|+|..|+..|.++|..+|+++.++.++|-||...+   .+..|++..+.+++++|+...+|..-+.++
T Consensus       360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~---~~~~aL~Da~~~ieL~p~~~kgy~RKg~al  436 (539)
T KOG0548|consen  360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG---EYPEALKDAKKCIELDPNFIKAYLRKGAAL  436 (539)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            34456889999999999999999999999999999999999999999   999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhhH
Q psy12642        150 HQVLTSAKCSAAKK  163 (201)
Q Consensus       150 ~~~~~~~~a~~~~~  163 (201)
                      ..+.++.+|.....
T Consensus       437 ~~mk~ydkAleay~  450 (539)
T KOG0548|consen  437 RAMKEYDKALEAYQ  450 (539)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999976543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.47  E-value=4.8e-12  Score=88.27  Aligned_cols=105  Identities=20%  Similarity=0.169  Sum_probs=94.1

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHH
Q psy12642         31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR  107 (201)
Q Consensus        31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  107 (201)
                      +....+++.+|..+...|++++|+.++++++...|+.   ..++..+|.++...|++++|+..+++++...|.+...+..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            4556778999999999999999999999999887654   4689999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccc--------------HHHHHHHHHHHHcCCccc
Q psy12642        108 YADILYTQGGLEN--------------IELAISHYLMAINLNEKN  138 (201)
Q Consensus       108 la~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~  138 (201)
                      +|.++...+   +              +++|++.+++++..+|++
T Consensus       112 lg~~~~~~g---~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        112 IAVIYHKRG---EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHcC---ChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999888   5              678888888888888876

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.47  E-value=2.4e-11  Score=94.10  Aligned_cols=161  Identities=12%  Similarity=-0.056  Sum_probs=130.7

Q ss_pred             chHHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy12642          2 APIVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLY   78 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~   78 (201)
                      +.+..+..+...|+++.+...+.++....|.+   .......+.++...|++++|...+++++..+|++..++.. +..+
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~   86 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA   86 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence            34555666777889999999999988877644   4567778889999999999999999999999999877764 5454


Q ss_pred             HhcC----CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642         79 LSEG----DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus        79 ~~~~----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      ...|    ....+...+......+|........+|.++...|   ++++|...++++++++|+++.++..++.++...|+
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804          87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG---QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence            4444    4455555555444667788888889999999999   99999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHH
Q psy12642        155 SAKCSAAKKKEI  166 (201)
Q Consensus       155 ~~~a~~~~~~~~  166 (201)
                      .++|.....+..
T Consensus       164 ~~eA~~~l~~~l  175 (355)
T cd05804         164 FKEGIAFMESWR  175 (355)
T ss_pred             HHHHHHHHHhhh
Confidence            999977655443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.45  E-value=6.2e-12  Score=82.02  Aligned_cols=103  Identities=16%  Similarity=0.119  Sum_probs=92.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDL   77 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~   77 (201)
                      +-.+..+...|++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+..+++++..+|++   +.++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            334566889999999999999999998876   5788999999999999999999999999998885   6789999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642         78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQ  106 (201)
Q Consensus        78 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~  106 (201)
                      +...|++++|+.++++++...|++..+..
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            99999999999999999999999876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.44  E-value=8.5e-13  Score=77.87  Aligned_cols=67  Identities=22%  Similarity=0.226  Sum_probs=44.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG-DYAKAVFCMEELFLHHP   99 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~   99 (201)
                      ++.+|..+|.+++..|++++|+..|.++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34556666666666666666666666666666666666666666666666 56666666666666665

...

>KOG0495|consensus

Probab=99.43  E-value=2.7e-11  Score=96.59  Aligned_cols=146  Identities=16%  Similarity=0.070  Sum_probs=105.5

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh------------
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS------------   80 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~------------   80 (201)
                      .|..+.-..++++++...|.....|...+.-++..|+...|..++.++++.+|++-++|+.-..+...            
T Consensus       563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla  642 (913)
T KOG0495|consen  563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA  642 (913)
T ss_pred             cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence            57788889999999999999999999999999999999999999999999999998877654444444            


Q ss_pred             ---------------------cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642         81 ---------------------EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        81 ---------------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                                           +++.++|+..++++++..|..+..|..+|+++-.++   +.+.|...|...++..|+.+
T Consensus       643 kar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~---~ie~aR~aY~~G~k~cP~~i  719 (913)
T KOG0495|consen  643 KARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME---NIEMAREAYLQGTKKCPNSI  719 (913)
T ss_pred             HHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH---HHHHHHHHHHhccccCCCCc
Confidence                                 445555555555555556655556666666665555   56666666666666666666


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhh
Q psy12642        140 RALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus       140 ~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      ..|..|+.+-.+.|+..+|+..
T Consensus       720 pLWllLakleEk~~~~~rAR~i  741 (913)
T KOG0495|consen  720 PLWLLLAKLEEKDGQLVRARSI  741 (913)
T ss_pred             hHHHHHHHHHHHhcchhhHHHH
Confidence            6666666655555555555443

>KOG4162|consensus

Probab=99.43  E-value=6.2e-12  Score=101.47  Aligned_cols=122  Identities=17%  Similarity=0.032  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642         36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ  115 (201)
Q Consensus        36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  115 (201)
                      .|...+..+...++.++|..++.++-..+|..+..|+..|.++...|++++|...|..++.++|+++.....+|.++...
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCcccHHHHHH--HHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        116 GGLENIELAIS--HYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       116 ~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      |   +..-|..  .+..+++++|.++.+|+++|.+....|+.+.|..
T Consensus       732 G---~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae  775 (799)
T KOG4162|consen  732 G---SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE  775 (799)
T ss_pred             C---CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence            5   3333333  5555555555555555555555555555554433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.43  E-value=8.1e-13  Score=81.08  Aligned_cols=80  Identities=26%  Similarity=0.281  Sum_probs=42.3

Q ss_pred             ccCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDET--NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      +|++++|+.+++++++.+|.  +...++.+|.+++..|++++|+..+++ ...+|.++...+.+|.++..+|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            35555555555555555553  334444455555555555555555555 445555555555555555555555555555


Q ss_pred             HHH
Q psy12642         91 MEE   93 (201)
Q Consensus        91 ~~~   93 (201)
                      |++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            554

>PRK15331 chaperone protein SicA; Provisional

Probab=99.43  E-value=1.3e-11  Score=83.23  Aligned_cols=107  Identities=7%  Similarity=-0.093  Sum_probs=97.4

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      .++.....+..|.-++..|++++|..+|.-+...+|.+++.|..||.++..+++|++|+..|..+..++++||...+..|
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            34555778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642        110 DILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus       110 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      .|+...+   +.+.|+.+|..++. .|.+..
T Consensus       113 qC~l~l~---~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331        113 QCQLLMR---KAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHhC---CHHHHHHHHHHHHh-CcchHH
Confidence            9999999   99999999999998 466443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.42  E-value=1.3e-12  Score=77.01  Aligned_cols=68  Identities=25%  Similarity=0.422  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642         67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus        67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                      ++.+|..+|.+++..|++++|+.+|++++..+|+++.+++.+|.++...|+  ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK--DYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCc
Confidence            578899999999999999999999999999999999999999999999971  39999999999999988

...

>TIGR00540 hemY_coli hemY protein

Probab=99.41  E-value=5e-10  Score=88.50  Aligned_cols=126  Identities=9%  Similarity=-0.032  Sum_probs=99.3

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-ETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~   86 (201)
                      +.-+..|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.++...|++++
T Consensus        92 lla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        92 LLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence            3345578888888888888887777777777778888888888888888888888777774 455556888888888888


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                      |...++++++..|+++.++..++.++...|   ++++|.+.+.+..+..+
T Consensus       172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~---d~~~a~~~l~~l~k~~~  218 (409)
T TIGR00540       172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSG---AWQALDDIIDNMAKAGL  218 (409)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHcCC
Confidence            888888888888888888888888888888   88888888887776543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1127|consensus

Probab=99.41  E-value=7.1e-12  Score=103.61  Aligned_cols=151  Identities=14%  Similarity=0.072  Sum_probs=127.1

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD--QETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A   87 (201)
                      |...-++.+|..+|+++.+.|+++..+.-..+.+|.+..+++.|..+.-..-+..|..  ...|..+|..|...+++.+|
T Consensus       502 Yrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~a  581 (1238)
T KOG1127|consen  502 YRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGA  581 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhH
Confidence            4444477778888888888888888888888888888888888877754444444433  34577788899999999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +..|+.++..+|.+...|..+|.+|...|   ++..|++.|.++..++|.+.-+.+-.+.+...+|.+.++.....
T Consensus       582 V~~fQsALR~dPkD~n~W~gLGeAY~~sG---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~  654 (1238)
T KOG1127|consen  582 VCEFQSALRTDPKDYNLWLGLGEAYPESG---RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALG  654 (1238)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHhcC---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999999999   99999999999999999999999999999999999999977443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.40  E-value=8.5e-12  Score=77.24  Aligned_cols=98  Identities=20%  Similarity=0.223  Sum_probs=91.2

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      ....+..++..|++++|+..++++++..|.++.++..+|.++...+++++|+..+++++...|.+..++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            34456678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCC
Q psy12642         83 DYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~  100 (201)
                      ++++|...+.+++..+|.
T Consensus        83 ~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          83 KYEEALEAYEKALELDPN  100 (100)
T ss_pred             hHHHHHHHHHHHHccCCC
Confidence            999999999999988773

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.40  E-value=2.9e-11  Score=97.34  Aligned_cols=124  Identities=18%  Similarity=0.128  Sum_probs=106.2

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcC
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKN--------KIPEAIKELTEYLKK--FMTDQETWQELCDLYLSEG   82 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~   82 (201)
                      .+++.+|+.+|+++++.+|++..++-.++.++....        +...+.....+++..  +|.++.++..+|..+...|
T Consensus       355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g  434 (517)
T PRK10153        355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG  434 (517)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence            345889999999999999999999998888776542        234555555665553  7777889999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      ++++|...+++++.++| +..++..+|.++...|   +.++|++.|++++.++|.++.
T Consensus       435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G---~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG---DNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCch
Confidence            99999999999999999 5889999999999999   999999999999999999774

>KOG0624|consensus

Probab=99.40  E-value=1.6e-10  Score=86.13  Aligned_cols=153  Identities=17%  Similarity=0.190  Sum_probs=131.4

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHH-----------
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---ETWQE-----------   73 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~-----------   73 (201)
                      ..|...|+-.-|+..+.++++..|+...+...+|.+++.+|.+++|+..|..+++.+|++.   ++...           
T Consensus        80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~  159 (504)
T KOG0624|consen   80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLV  159 (504)
T ss_pred             HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHH
Confidence            3466778888899999999999999999999999999999999999999999999888552   22222           


Q ss_pred             -HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642         74 -LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV  152 (201)
Q Consensus        74 -l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  152 (201)
                       ....+...|++..|+....+.+++.|-+...+...+.||...|   +...|+.-++.+-++..++...++.++..+...
T Consensus       160 ~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~---e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  160 QQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG---EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC---cHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence             2344667889999999999999999999999999999999999   999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhH
Q psy12642        153 LTSAKCSAAKK  163 (201)
Q Consensus       153 ~~~~~a~~~~~  163 (201)
                      |+.+.+..+..
T Consensus       237 gd~~~sL~~iR  247 (504)
T KOG0624|consen  237 GDAENSLKEIR  247 (504)
T ss_pred             hhHHHHHHHHH
Confidence            99888865443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.40  E-value=1.9e-12  Score=79.47  Aligned_cols=81  Identities=25%  Similarity=0.289  Sum_probs=69.9

Q ss_pred             cCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642         47 KNKIPEAIKELTEYLKKFMT--DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA  124 (201)
Q Consensus        47 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A  124 (201)
                      .|+++.|+..+++++...|.  +...++.+|.+|+..|+|++|+..+++ ...+|.++...+.+|.+++.+|   ++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~---~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG---KYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC---CHHHH
Confidence            58899999999999999985  466778889999999999999999999 8888888888888899999999   99999


Q ss_pred             HHHHHHH
Q psy12642        125 ISHYLMA  131 (201)
Q Consensus       125 ~~~~~~a  131 (201)
                      +++|+++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9998875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.40  E-value=2e-12  Score=75.38  Aligned_cols=62  Identities=24%  Similarity=0.326  Sum_probs=33.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q psy12642         40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN  101 (201)
Q Consensus        40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  101 (201)
                      +|..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++..+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44555555555555555555555555555555555555555555555555555555555554

>KOG1174|consensus

Probab=99.38  E-value=6.1e-11  Score=90.12  Aligned_cols=151  Identities=15%  Similarity=0.089  Sum_probs=127.0

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..++..|++++|+..|+++.-.+|......-..|.++...|+++.-.......+........-|+--+...+..+++..
T Consensus       239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r  318 (564)
T KOG1174|consen  239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER  318 (564)
T ss_pred             hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence            34456667777777777777777777777777777777777777777666666666655556667777788888999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      |+.+-+++|..+|++..++...|..+...+   +.++|+-.|+.+..+.|...+.|.+|..||...|...+|..
T Consensus       319 AL~~~eK~I~~~~r~~~alilKG~lL~~~~---R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~  389 (564)
T KOG1174|consen  319 ALNFVEKCIDSEPRNHEALILKGRLLIALE---RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA  389 (564)
T ss_pred             HHHHHHHHhccCcccchHHHhccHHHHhcc---chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence            999999999999999999999999999999   99999999999999999999999999999999999999843

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.38  E-value=3.9e-11  Score=88.60  Aligned_cols=106  Identities=16%  Similarity=0.190  Sum_probs=87.6

Q ss_pred             cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHH
Q psy12642         33 NTAARKRKICIL-KAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLH  105 (201)
Q Consensus        33 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~  105 (201)
                      +....+..+..+ ...|++++|+..|+..++.+|++   +.+++.+|.+|+..|++++|+..|++++...|++   +.++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            345556666654 56789999999999999999988   5788899999999999999999999999887764   6678


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642        106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRA  141 (201)
Q Consensus       106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  141 (201)
                      +.+|.++...|   ++++|+..|+++++..|+...+
T Consensus       221 ~klg~~~~~~g---~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        221 FKVGVIMQDKG---DTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCHHH
Confidence            88899988888   9999999999999999887654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.37  E-value=1.4e-11  Score=92.36  Aligned_cols=146  Identities=21%  Similarity=0.101  Sum_probs=118.2

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG--   82 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--   82 (201)
                      +-+..++..|++++|++.+++.     .+..+......+++..++++.|.+.++...+.+.++.-.....+.+.+..|  
T Consensus       107 ~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  107 LAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence            3445577789999999888764     567777888899999999999999999988877665544444444444455  


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      ++.+|...|++.....|.++..+..++.++...|   ++++|.+.+++++..+|+++.++.+++.|...+|+...+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~---~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~  254 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG---HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA  254 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT----HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence            6999999999998888899999999999999999   999999999999999999999999999999999987444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1128|consensus

Probab=99.37  E-value=9.2e-12  Score=100.03  Aligned_cols=146  Identities=12%  Similarity=0.035  Sum_probs=95.9

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+.+|...|+..+|..+..+-++ .|.++..|..+|.+.....-+++|.+..+..      +..+...+|......++|+
T Consensus       430 vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs  502 (777)
T KOG1128|consen  430 VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFS  502 (777)
T ss_pred             HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHH
Confidence            35667777888888888888777 4555555555555544433344443333322      1224455555555667777


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      ++.++++..++++|-....|+.+|.+....+   +++.|.++|..++.++|++..+|.+++..|.++++..+|-..
T Consensus       503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqle---k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~  575 (777)
T KOG1128|consen  503 EADKHLERSLEINPLQLGTWFGLGCAALQLE---KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK  575 (777)
T ss_pred             HHHHHHHHHhhcCccchhHHHhccHHHHHHh---hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence            7777777777777777777777777777777   777777777777777777777777777777777777776443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.36  E-value=4.1e-12  Score=74.01  Aligned_cols=64  Identities=28%  Similarity=0.436  Sum_probs=60.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                      .+|..++..|++++|+..|++++..+|+++.+++.+|.++...|   ++++|+.+|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG---RYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCC
Confidence            57899999999999999999999999999999999999999999   99999999999999999875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.36  E-value=1.3e-10  Score=91.47  Aligned_cols=140  Identities=13%  Similarity=0.066  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      +...+.++..-...|+++.+...++..+...|+.++|...+++.++ .|.++......+.+  ..++.+++++.+++.++
T Consensus       246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk  322 (398)
T PRK10747        246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIK  322 (398)
T ss_pred             HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHh
Confidence            3344444444445577999999999999999999999999999999 45566655555544  45999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         97 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        97 ~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      .+|+|+..+..+|.++...+   ++++|.++|+++++..|++.. +..++.++.+.|+.++|....+
T Consensus       323 ~~P~~~~l~l~lgrl~~~~~---~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        323 QHGDTPLLWSTLGQLLMKHG---EWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             hCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999   999999999999999999654 6789999999999999955444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.36  E-value=9.7e-11  Score=86.54  Aligned_cols=90  Identities=16%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             ccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAK   86 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~   86 (201)
                      .|+|++|+..|+.++...|++   +.+++.+|.+|+..|++++|+..|.+++..+|++   +++++.+|.++...|++++
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~  235 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK  235 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence            345555555555555555444   2445555555555555555555555555444442   3444444555555555555


Q ss_pred             HHHHHHHHhhcCCCCH
Q psy12642         87 AVFCMEELFLHHPHNH  102 (201)
Q Consensus        87 A~~~~~~al~~~~~~~  102 (201)
                      |...|++++...|++.
T Consensus       236 A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        236 AKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHHHCcCCH
Confidence            5555555555555443

>KOG4162|consensus

Probab=99.35  E-value=3.7e-11  Score=97.06  Aligned_cols=132  Identities=19%  Similarity=0.122  Sum_probs=124.7

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      ..+..+...++.++|..++.++-..+|..+..++..|.++...|++.+|...|..++.++|+++.....+|.++...|+.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~  734 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP  734 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence            44556677889999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH--HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642         85 AKAVF--CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        85 ~~A~~--~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                      .-|..  .+..+++.+|.++.+|+.+|.++...|   +.+.|.++|..++++.+.+|
T Consensus       735 ~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G---d~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  735 RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG---DSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---chHHHHHHHHHHHhhccCCC
Confidence            88887  999999999999999999999999999   99999999999999998766

>KOG0543|consensus

Probab=99.34  E-value=7.7e-11  Score=89.42  Aligned_cols=119  Identities=18%  Similarity=0.168  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTD---------------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN  101 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  101 (201)
                      ....|..+++.|+|..|...|++++..-+.+               ..++.+++.++.++++|.+|+...+++|.++|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            3456888999999999999999988753311               2367889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642        102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      ..++++.|.++...+   +++.|+..|+++++++|+|-.+...+..|-.+...+...
T Consensus       291 ~KALyRrG~A~l~~~---e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  291 VKALYRRGQALLALG---EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             hhHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999   999999999999999999999999999888877665544

>KOG1840|consensus

Probab=99.34  E-value=2.2e-10  Score=91.23  Aligned_cols=182  Identities=16%  Similarity=0.153  Sum_probs=140.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CC---HH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM-----TD---QE   69 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~---~~   69 (201)
                      ++..|..+++|++|+..|++++..        +|.-..++..++.+|...|++++|..++++++.+..     ..   ..
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            566788999999999999999985        355568899999999999999999999999987532     22   44


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----CCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC------
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHH-----PHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLN------  135 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~------  135 (201)
                      .+..++.++..++++++|+.++++++++.     +.+   +....++|.+++.+|   ++++|.+.|++++++.      
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g---k~~ea~~~~k~ai~~~~~~~~~  403 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG---KYKEAEELYKKAIQILRELLGK  403 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHhcccC
Confidence            56778899999999999999999998752     233   457899999999999   9999999999999765      


Q ss_pred             --cccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---------HhHHHHHHHHHHHHhhhcchHH
Q psy12642        136 --EKNIRALYGLALSCHQVLTSAKCSAAKKKEISK---------QMMWVSKHLARQYEEQQGNTET  190 (201)
Q Consensus       136 --p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~l~~~y~~~~~~~~~  190 (201)
                        +.....+++++..|.+.+.+.+|..-......=         -.......|...|+.+..-+.+
T Consensus       404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a  469 (508)
T KOG1840|consen  404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA  469 (508)
T ss_pred             cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence              233567889999999999988885533222110         1112334577778777766663

>PRK11906 transcriptional regulator; Provisional

Probab=99.33  E-value=2.6e-10  Score=88.52  Aligned_cols=123  Identities=12%  Similarity=-0.003  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHHH---hcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642         15 RYEEALEHLETII---KIDETNTAARKRKICILKAK---------NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus        15 ~~~~A~~~~~~~l---~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      ....|+.+|.+++   +.+|....++..++.+++..         .+..+|.+..+++++++|.|+.+...+|.+....+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            5678999999999   99999999999999988764         23567888999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      +++.|...|++++.++|+.+.+++..|.+....|   +.++|++.++++++++|.-..
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G---~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNE---KIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCchhhH
Confidence            9999999999999999999999999999999999   999999999999999997544

>KOG0550|consensus

Probab=99.32  E-value=4.3e-11  Score=90.74  Aligned_cols=131  Identities=15%  Similarity=0.104  Sum_probs=117.8

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT------------AARKRKICILKAKNKIPEAIKELTEYLKKFMTD----   67 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----   67 (201)
                      .|...++.-..+.+.|+..|++++..+|++.            ..+...|.-.+..|++..|.+.|..+|.++|++    
T Consensus       207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n  286 (486)
T KOG0550|consen  207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN  286 (486)
T ss_pred             HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence            4455667778999999999999999999875            456677888899999999999999999999987    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      ...|..++.+..+.|+..+|+...+.++.++|....++...|.|+...+   ++++|++.|+++++...+
T Consensus       287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le---~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE---KWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccc
Confidence            4467778899999999999999999999999999999999999999999   999999999999988765

>KOG2003|consensus

Probab=99.31  E-value=7.3e-10  Score=85.53  Aligned_cols=144  Identities=19%  Similarity=0.129  Sum_probs=109.9

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-----
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG-----   82 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----   82 (201)
                      +.+..+|+.++|+++|-+...+--++..++..++.+|..+.+..+|++++.++..+-|++|.++..+|.+|-+.|     
T Consensus       532 lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  532 LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence            344556666666666666666666666666666666666666666666666666666666666666666555554     


Q ss_pred             -----------------------------CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642         83 -----------------------------DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        83 -----------------------------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                                                   =+++|+.+|+++..+.|+...--..++.|+.+.|   +|++|.+.|+...+
T Consensus       612 fq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg---nyqka~d~yk~~hr  688 (840)
T KOG2003|consen  612 FQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG---NYQKAFDLYKDIHR  688 (840)
T ss_pred             hhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH
Confidence                                         4578889999998889988777788899999999   99999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhhh
Q psy12642        134 LNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus       134 ~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      ..|.+..++.-|..+...+|-
T Consensus       689 kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  689 KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             hCccchHHHHHHHHHhccccc
Confidence            999999999999988888774

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.31  E-value=1.7e-10  Score=80.44  Aligned_cols=97  Identities=18%  Similarity=0.178  Sum_probs=85.2

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE   81 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~   81 (201)
                      -.+..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|++...+..+|.++...
T Consensus        40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  119 (172)
T PRK02603         40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR  119 (172)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            34566788999999999999999877653   478999999999999999999999999999999999999999999998


Q ss_pred             CC--------------HHHHHHHHHHHhhcCCCC
Q psy12642         82 GD--------------YAKAVFCMEELFLHHPHN  101 (201)
Q Consensus        82 ~~--------------~~~A~~~~~~al~~~~~~  101 (201)
                      |+              +++|+.++++++..+|++
T Consensus       120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            87              577778888888878776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.31  E-value=2.2e-10  Score=88.81  Aligned_cols=115  Identities=23%  Similarity=0.183  Sum_probs=96.5

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      +...++++.|+..+++..+.+|+   +...++.++...++..+|+..++++++..|.+...+...+..+...++++.|+.
T Consensus       179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            34467888888888888887765   455678888888888888888888888888888888888888888888999999


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM  130 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  130 (201)
                      +.++++...|++...|+.++.+|...|   +++.|+-.++.
T Consensus       256 iAk~av~lsP~~f~~W~~La~~Yi~~~---d~e~ALlaLNs  293 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQLAECYIQLG---DFENALLALNS  293 (395)
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhcC---CHHHHHHHHhc
Confidence            999999889988888999999988888   88888877663

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.30  E-value=8e-10  Score=88.77  Aligned_cols=154  Identities=19%  Similarity=0.050  Sum_probs=106.5

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC----
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG----   82 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----   82 (201)
                      +.-+...|++++|++++++....-.+...+...+|.++..+|++++|...|...++.+|++...+..+..+.....    
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~   90 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD   90 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence            3456677888888888888777777777888888888888888888888888888888888776666555541111    


Q ss_pred             -CHHHHHHHHH--------------------------------------------------------------HHh----
Q psy12642         83 -DYAKAVFCME--------------------------------------------------------------ELF----   95 (201)
Q Consensus        83 -~~~~A~~~~~--------------------------------------------------------------~al----   95 (201)
                       +.+.-...|+                                                              ..+    
T Consensus        91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~  170 (517)
T PF12569_consen   91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYV  170 (517)
T ss_pred             ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence             1111000000                                                              110    


Q ss_pred             ---hc------------CCCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         96 ---LH------------HPHNH--LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        96 ---~~------------~~~~~--~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                         ..            .|...  .+++.+++.+...|   ++++|+++.+++|...|..+..+...|.++.+.|+..+|
T Consensus       171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g---~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A  247 (517)
T PF12569_consen  171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG---DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA  247 (517)
T ss_pred             HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence               00            01111  24577788888888   888888888888888888888888888888888888888


Q ss_pred             hhhhH
Q psy12642        159 SAAKK  163 (201)
Q Consensus       159 ~~~~~  163 (201)
                      .....
T Consensus       248 a~~~~  252 (517)
T PF12569_consen  248 AEAMD  252 (517)
T ss_pred             HHHHH
Confidence            66443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.30  E-value=3e-10  Score=78.87  Aligned_cols=142  Identities=17%  Similarity=0.073  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCcccHH
Q psy12642         48 NKIPEAIKELTEYLKKFMTD--QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRYADILYTQGGLENIE  122 (201)
Q Consensus        48 ~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~~~  122 (201)
                      +.+..+...+...++..+.+  ..+++.+|.++...|++++|+..|++++.+.|+.   +.++..+|.++...|   +++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g---~~~   89 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG---EHT   89 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC---CHH
Confidence            33555555665555555555  6678999999999999999999999999887653   458999999999999   999


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHhhhcchHHHHH
Q psy12642        123 LAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTE  193 (201)
Q Consensus       123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~  193 (201)
                      +|+..+++++.++|.....+..++.++...|........ ...+......+...+.+.+....++...+..
T Consensus        90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~  159 (168)
T CHL00033         90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGD-SEIAEAWFDQAAEYWKQAIALAPGNYIEAQN  159 (168)
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHccc-HHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence            999999999999999999999999999965543221111 1112233334444445555544444333333

>PRK15331 chaperone protein SicA; Provisional

Probab=99.29  E-value=1e-10  Score=78.96  Aligned_cols=98  Identities=14%  Similarity=0.019  Sum_probs=90.9

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      .++..++..|++++|..+|.-+...+|.++..+..+|.++..++++++|+..|..+..+.++||...+..|.||+..|+.
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHH
Q psy12642         85 AKAVFCMEELFLHHPHNHL  103 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~  103 (201)
                      +.|..+|+.++. .|.+..
T Consensus       122 ~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331        122 AKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHHHHHHHh-CcchHH
Confidence            999999999998 455433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.29  E-value=1.9e-10  Score=96.65  Aligned_cols=133  Identities=17%  Similarity=0.047  Sum_probs=115.9

Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH------
Q psy12642         29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH------  102 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------  102 (201)
                      .+|.+..++..++..+...|++++|+..++..++.+|+...+++.+|.++...+++.++.-.  .++...+.+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            45888899999999999999999999999999999999999999999999998888777665  5555555554      


Q ss_pred             -------------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy12642        103 -------------LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS  167 (201)
Q Consensus       103 -------------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  167 (201)
                                   .+++.+|.||-.+|   +.++|...|+++++.+|+++.++.++|-.|... +.++|..-.++.+.
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g---~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~  177 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLN---ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY  177 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence                         89999999999999   999999999999999999999999999999999 99999775555443

>KOG0543|consensus

Probab=99.28  E-value=1.8e-10  Score=87.45  Aligned_cols=126  Identities=13%  Similarity=0.048  Sum_probs=109.7

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcc----c-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDET----N-----------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQ   72 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~----~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   72 (201)
                      ..+++.|+|..|...|++++..-+.    +           ..++..++.|+..++++..|+...++++..+|+|..+++
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy  295 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY  295 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence            4589999999999999998874321    1           267889999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHcCCc
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI-ELAISHYLMAINLNE  136 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~-~~A~~~~~~al~~~p  136 (201)
                      ..|.++...|+|+.|+..|+++++++|+|..+...+..+-.+..   .+ +...+.|.+.+..-+
T Consensus       296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~---~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR---EYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999888888776666   44 445788888887655

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.28  E-value=7.2e-10  Score=93.23  Aligned_cols=189  Identities=15%  Similarity=0.089  Sum_probs=136.8

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----------------
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-----------------   68 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------   68 (201)
                      .+..+...+++++|+..++..++..|+...+++.+|.++...+++.++...  .++...+.+.                 
T Consensus        37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~  114 (906)
T PRK14720         37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGE  114 (906)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhh
Confidence            445556899999999999999999999999999999999998887766555  5555555554                 


Q ss_pred             --HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH--------------
Q psy12642         69 --ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI--------------  132 (201)
Q Consensus        69 --~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al--------------  132 (201)
                        .+++.+|.||-++|++++|...++++++.+|.|+.++.++|..+...    +.++|+.++.+|+              
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~----dL~KA~~m~~KAV~~~i~~kq~~~~~e  190 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE----DKEKAITYLKKAIYRFIKKKQYVGIEE  190 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence              89999999999999999999999999999999999999999887665    3555555555554              


Q ss_pred             ------cCCcccHHHH--------------------HHHHHHHHHhhhhhhhhhhhHHHH--HHHhHHHHHHHHHHHHhh
Q psy12642        133 ------NLNEKNIRAL--------------------YGLALSCHQVLTSAKCSAAKKKEI--SKQMMWVSKHLARQYEEQ  184 (201)
Q Consensus       133 ------~~~p~~~~~~--------------------~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~y~~~  184 (201)
                            ..+|++...+                    .-+-.+|...++++++..-.+...  ..--.++...+...|++.
T Consensus       191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k  270 (906)
T PRK14720        191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK  270 (906)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence                  4445433321                    122255666666666644333322  122345666777778866


Q ss_pred             hcchHHHHHHHhhccC
Q psy12642        185 QGNTETLTELMSALQV  200 (201)
Q Consensus       185 ~~~~~~~~~~~~~~~~  200 (201)
                      =.+..-++++++-.+|
T Consensus       271 Y~~~~~~ee~l~~s~l  286 (906)
T PRK14720        271 YKDHSLLEDYLKMSDI  286 (906)
T ss_pred             ccCcchHHHHHHHhcc
Confidence            6665677777766555

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.26  E-value=1.6e-09  Score=73.45  Aligned_cols=117  Identities=20%  Similarity=0.138  Sum_probs=100.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC
Q psy12642         44 LKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRYADILYTQGG  117 (201)
Q Consensus        44 ~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~  117 (201)
                      ....++...+...++..+..+|++   ..+.+.+|.+++..|++++|...|++++...|++   +.+.+.++.++...| 
T Consensus        21 ~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~-   99 (145)
T PF09976_consen   21 ALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG-   99 (145)
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-
Confidence            336889999999999999999998   5677789999999999999999999999988665   357889999999999 


Q ss_pred             cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642        118 LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus       118 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                        ++++|+..++. +...+..+.++..+|.++...|+.++|.....+
T Consensus       100 --~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  100 --QYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             --CHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence              99999999976 444556678889999999999999999765443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.25  E-value=3.9e-10  Score=87.50  Aligned_cols=116  Identities=20%  Similarity=0.193  Sum_probs=106.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCc
Q psy12642         39 RKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL  118 (201)
Q Consensus        39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~  118 (201)
                      .+..++...++++.|+.++++..+.+|+   +...++.++...++-.+|+..+++++...|.+...+...+..+...+  
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--  248 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK--  248 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Confidence            3445566678999999999999988765   66678999999999999999999999999999999999999999999  


Q ss_pred             ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        119 ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       119 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                       +++.|+...++++...|++...|+.|+.||..+|++++|..
T Consensus       249 -~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl  289 (395)
T PF09295_consen  249 -KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL  289 (395)
T ss_pred             -CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence             99999999999999999999999999999999999999954

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.25  E-value=5.2e-11  Score=69.90  Aligned_cols=64  Identities=28%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        46 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      ..|++++|+..+++++..+|++..++..+|.+|...|++++|...+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3445555555555555555555555555555555555555555555555555555444444333

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.23  E-value=4.5e-11  Score=70.18  Aligned_cols=68  Identities=25%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL   77 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~   77 (201)
                      ++..|++++|+..|++++..+|++..+++.++.++...|++++|...+++++..+|+++.++..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999999999999999999999998888777653

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.22  E-value=5.4e-10  Score=81.11  Aligned_cols=104  Identities=16%  Similarity=0.158  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHH
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRYAD  110 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~  110 (201)
                      .+..+.-++..|+|..|...|...++..|++   +.+++.||++++.+|+|++|...|..+++..|.+   +..++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6778888899999999999999999999987   7899999999999999999999999999987754   678999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHcCCcccHHHHH
Q psy12642        111 ILYTQGGLENIELAISHYLMAINLNEKNIRALY  143 (201)
Q Consensus       111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  143 (201)
                      +...++   +.++|...|+++++..|+...+..
T Consensus       224 ~~~~l~---~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         224 SLGRLG---NTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHhc---CHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999   999999999999999999776543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.20  E-value=2e-10  Score=68.40  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=36.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642         42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ  106 (201)
Q Consensus        42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  106 (201)
                      .++...+++++|++.+++++..+|+++..|...|.++..+|++++|+..|+++++..|+++....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555554433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.18  E-value=2.3e-10  Score=68.15  Aligned_cols=71  Identities=25%  Similarity=0.313  Sum_probs=65.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL  147 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  147 (201)
                      +..+|...+++++|+.++++++..+|+++..+..+|.++...|   ++++|+..|+++++..|+++.+....++
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG---RYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            3578899999999999999999999999999999999999999   9999999999999999998877655443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.17  E-value=1.2e-08  Score=74.90  Aligned_cols=108  Identities=8%  Similarity=0.022  Sum_probs=90.5

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH---HHH
Q psy12642         32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW---QELCDLYLSEGDYAKAVFCMEELFLHHPHNH---LLH  105 (201)
Q Consensus        32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~  105 (201)
                      .++..++..|..+...|++++|+..|++++...|..+.+.   +.+|.+|++.+++++|+..+++.++.+|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            4677788899999999999999999999999999986554   8899999999999999999999999999775   467


Q ss_pred             HHHHHHHHHcC---------------CcccHHHHHHHHHHHHcCCcccH
Q psy12642        106 QRYADILYTQG---------------GLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus       106 ~~la~~~~~~~---------------~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                      +.+|.++...+               ++....+|+..|++.++..|+..
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            88887754332               11235689999999999999853

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.16  E-value=2.2e-09  Score=70.99  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=91.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH---HHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL---LHQ  106 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~  106 (201)
                      .+..++..|...+..|+|++|++.|+.+....|..   ..+...++.+|+..|++++|+..+++.++++|.++.   +++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            45678888999999999999999999999988876   568888999999999999999999999999998754   678


Q ss_pred             HHHHHHHHcC------------CcccHHHHHHHHHHHHcCCcccHHH
Q psy12642        107 RYADILYTQG------------GLENIELAISHYLMAINLNEKNIRA  141 (201)
Q Consensus       107 ~la~~~~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~  141 (201)
                      ..|.+++...            ++.....|...|++.++..|++.-+
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            8888887765            1123889999999999999987543

>KOG1156|consensus

Probab=99.16  E-value=8.7e-09  Score=82.34  Aligned_cols=150  Identities=15%  Similarity=0.046  Sum_probs=128.6

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A   87 (201)
                      +.+...|+-++|.......+..++.+..+|..+|.++...++|++|+++|..++.+.|+|..+|.-++.+-..+++++..
T Consensus        49 L~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   49 LTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             chhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC---cccH-----HHHHHHHHHHHHhhhhhhhh
Q psy12642         88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN---EKNI-----RALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus        88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~-----~~~~~l~~~~~~~~~~~~a~  159 (201)
                      ...-.+.++..|.....|..++..+...|   ++..|....+...+..   |+..     .+...........|...++.
T Consensus       129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g---~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al  205 (700)
T KOG1156|consen  129 LETRNQLLQLRPSQRASWIGFAVAQHLLG---EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL  205 (700)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            99999999999999999999999999999   9999988877766554   4322     23334444444555555553


Q ss_pred             h
Q psy12642        160 A  160 (201)
Q Consensus       160 ~  160 (201)
                      .
T Consensus       206 e  206 (700)
T KOG1156|consen  206 E  206 (700)
T ss_pred             H
Confidence            3

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.16  E-value=2e-09  Score=78.15  Aligned_cols=102  Identities=15%  Similarity=0.090  Sum_probs=93.3

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYL   79 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~   79 (201)
                      .+..+++.|+|..|...|...++..|++.   .+++++|.+++.+|+++.|...|..+++..|++   ++.++.+|.+..
T Consensus       147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~  226 (262)
T COG1729         147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG  226 (262)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence            35678899999999999999999998764   899999999999999999999999999988876   789999999999


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCHHHHHH
Q psy12642         80 SEGDYAKAVFCMEELFLHHPHNHLLHQR  107 (201)
Q Consensus        80 ~~~~~~~A~~~~~~al~~~~~~~~~~~~  107 (201)
                      .+|+.++|...|+++++..|+...+...
T Consensus       227 ~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         227 RLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999998766543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.16  E-value=2.8e-09  Score=69.23  Aligned_cols=96  Identities=22%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPH---NHLLHQRY  108 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l  108 (201)
                      .+++.++.++-..|+.++|+..|++++...+..   ..++..+|..+...|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            356777888888888888888888888765444   456777888888888888888888888877777   66677777


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642        109 ADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus       109 a~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      +.++...|   +.++|+..+..++.
T Consensus        82 Al~L~~~g---r~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLG---RPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHH
Confidence            78888888   88888888877664

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.15  E-value=1.2e-09  Score=82.14  Aligned_cols=134  Identities=18%  Similarity=0.109  Sum_probs=111.3

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN--KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      +.+..+...++++.|.+.++.+.+.+.++.-+....+++.+..|  ++.+|.-+|++..+..|.++..+..++.+++.+|
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~  215 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG  215 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence            44566788999999999999999888888777777777777666  6999999999988888899999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHcCCcccHHH
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI-ELAISHYLMAINLNEKNIRA  141 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~  141 (201)
                      +|++|...+++++..+|+++.++.+++.+....|   +. +.+.+++.+....+|+++..
T Consensus       216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g---k~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG---KPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT----TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC---CChhHHHHHHHHHHHhCCCChHH
Confidence            9999999999999999999999999999999988   55 56667888877788887643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1128|consensus

Probab=99.15  E-value=3e-10  Score=91.55  Aligned_cols=118  Identities=15%  Similarity=0.061  Sum_probs=59.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q psy12642         38 KRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG  117 (201)
Q Consensus        38 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~  117 (201)
                      ..+|......+++.++.++++..++++|-....|+.+|.+..+.++++.|+++|..++.++|++...|.+++..|...+ 
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~-  567 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK-  567 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh-
Confidence            3334434444555555555555555555555555555555555555555555555555555555555555555555555 


Q ss_pred             cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642        118 LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       118 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                        +..+|...++++++-+-.+...|-|...+....|.++.|
T Consensus       568 --~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  568 --KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             --hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence              455555555555555444444444444444455544444

>KOG1127|consensus

Probab=99.14  E-value=3.6e-09  Score=88.12  Aligned_cols=147  Identities=15%  Similarity=0.064  Sum_probs=132.0

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCME   92 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   92 (201)
                      .++...|+..|-++++.+|+...++-.+|.+|...-+...|.++|.++.+++|++..++-..+..|....+++.|....-
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999866


Q ss_pred             HHhhcCCCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         93 ELFLHHPHN--HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        93 ~al~~~~~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      .+-+..|-.  ...|..+|..+...+   +...|+..|+.+++.+|.+.+.|.+++.+|-..|.++-|.+.-
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~---n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF  619 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAH---NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVF  619 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCcc---chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhh
Confidence            655555532  235667999999999   9999999999999999999999999999999999998886643

>KOG3785|consensus

Probab=99.11  E-value=2.8e-09  Score=79.98  Aligned_cols=152  Identities=16%  Similarity=0.046  Sum_probs=116.9

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNT-AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A   87 (201)
                      .+....+|+.|+.+++-.+..+.... ....++|.|++++|++++|+..|.-+...+..+.+.+..++.+++..|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            45667899999999998886654333 66777899999999999999999998887666788999999999999999999


Q ss_pred             HHHHHHHhh--------------cCC------------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642         88 VFCMEELFL--------------HHP------------HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA  141 (201)
Q Consensus        88 ~~~~~~al~--------------~~~------------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  141 (201)
                      ...-.++-+              ++.            +...-...++.+++...   .|++|++.|++++.-+|+....
T Consensus       111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~---HYQeAIdvYkrvL~dn~ey~al  187 (557)
T KOG3785|consen  111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM---HYQEAIDVYKRVLQDNPEYIAL  187 (557)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH---HHHHHHHHHHHHHhcChhhhhh
Confidence            876665422              110            00111234555666556   7999999999999999999988


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhH
Q psy12642        142 LYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       142 ~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      -.+++.||.++.-++-+..-.+
T Consensus       188 NVy~ALCyyKlDYydvsqevl~  209 (557)
T KOG3785|consen  188 NVYMALCYYKLDYYDVSQEVLK  209 (557)
T ss_pred             HHHHHHHHHhcchhhhHHHHHH
Confidence            8999999999887776644333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.10  E-value=4.7e-08  Score=69.97  Aligned_cols=107  Identities=18%  Similarity=0.176  Sum_probs=86.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH---HHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH---LLHQ  106 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~  106 (201)
                      .+..++..|...+..|++.+|+..|++++...|.+   +.+.+.+|.+++..|++++|+..+++.+...|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46778899999999999999999999999999987   67899999999999999999999999999999875   4788


Q ss_pred             HHHHHHHHcC--------CcccHHHHHHHHHHHHcCCcccH
Q psy12642        107 RYADILYTQG--------GLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus       107 ~la~~~~~~~--------~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                      .+|.+++...        +.....+|+..|+..++..|+.+
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence            8888876542        22356799999999999999854

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.09  E-value=1.1e-07  Score=82.66  Aligned_cols=149  Identities=12%  Similarity=0.099  Sum_probs=76.1

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKI----DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSE   81 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~   81 (201)
                      +..|.+.|++++|.+.++.+...    .|+ ..++..+...|.+.|++++|.+.|+...+.+ +.+...|..+...|.+.
T Consensus       549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~  627 (1060)
T PLN03218        549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK  627 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            34444555555555555555431    222 3344444555555555555555555555443 23444555555555555


Q ss_pred             CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHHhhhhhhh
Q psy12642         82 GDYAKAVFCMEELFLH--HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN-EKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      |++++|...|++....  .|+ ...+..+...+...|   ++++|.+.+....+.. +.+...+..+..+|.+.|+.++|
T Consensus       628 G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G---~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA  703 (1060)
T PLN03218        628 GDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAG---DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA  703 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            5555555555555543  222 444555555555555   5556655555555433 12344555566666666666555


Q ss_pred             hh
Q psy12642        159 SA  160 (201)
Q Consensus       159 ~~  160 (201)
                      ..
T Consensus       704 ~~  705 (1060)
T PLN03218        704 LE  705 (1060)
T ss_pred             HH
Confidence            43

>KOG4234|consensus

Probab=99.09  E-value=3.4e-09  Score=73.50  Aligned_cols=120  Identities=13%  Similarity=0.054  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-----ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      .-+..-|.-++..|+|++|...|..++..-|..+     -++...|.+..+++.++.|+....++|.++|.+..++.+.+
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA  175 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA  175 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence            3344567778889999999999999999888763     35667788999999999999999999999999999999999


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhh
Q psy12642        110 DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK  157 (201)
Q Consensus       110 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  157 (201)
                      .+|-.+.   .+++|+.-|++.++.+|....+...++.+--....-.+
T Consensus       176 eayek~e---k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernE  220 (271)
T KOG4234|consen  176 EAYEKME---KYEEALEDYKKILESDPSRREAREAIARLPPKINERNE  220 (271)
T ss_pred             HHHHhhh---hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHH
Confidence            9999988   99999999999999999887777777666555554333

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.08  E-value=8.4e-08  Score=83.42  Aligned_cols=149  Identities=15%  Similarity=0.106  Sum_probs=68.3

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCC
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDE-TNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~   83 (201)
                      .+..|.+.|++++|...|+.+.+... -+...|..+...|.+.|++++|+..|....... ..+...|..+...|.+.|+
T Consensus       478 LI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~  557 (1060)
T PLN03218        478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA  557 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence            33444555555555555555554332 134445555555555555555555555443321 1123444444455555555


Q ss_pred             HHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHHhhhhhhh
Q psy12642         84 YAKAVFCMEELFLH----HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN-EKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        84 ~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      +++|...|.+....    .|+ ...+..+...+.+.|   ++++|.+.|+...+.+ +.++..|..+...|.+.|+.++|
T Consensus       558 ~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G---~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA  633 (1060)
T PLN03218        558 VDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAG---QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA  633 (1060)
T ss_pred             HHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence            55555555544331    222 334444444444444   4445555544444433 22334444444444444444444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=99.07  E-value=3.1e-07  Score=63.30  Aligned_cols=145  Identities=21%  Similarity=0.137  Sum_probs=121.3

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK-KFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      .+.=+.+.......+.++.-|+. .-.+.++....+.|++.+|..+|++++. .+.+++.....+++..+..+++..|..
T Consensus        67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~  145 (251)
T COG4700          67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQ  145 (251)
T ss_pred             HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence            34446666666666666666664 4567899999999999999999999987 677889999999999999999999999


Q ss_pred             HHHHHhhcCC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         90 CMEELFLHHP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        90 ~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      .+++..+.+|  ..+.....+|.++...|   .+.+|...|+.++...|+ +.+....+.....+|...++..
T Consensus       146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g---~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         146 TLEDLMEYNPAFRSPDGHLLFARTLAAQG---KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHhhcCCccCCCCchHHHHHHHHhcC---CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence            9999999887  45778889999999999   999999999999999998 6666667778888887777643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.06  E-value=1.1e-07  Score=68.61  Aligned_cols=150  Identities=13%  Similarity=0.086  Sum_probs=122.9

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHh
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---ETWQELCDLYLS   80 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~   80 (201)
                      +....+.|++++|+..|+.+...+|.++   .+...++..+.+.++++.|+..+++.++++|+++   .+++..|.+++.
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~  120 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF  120 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence            3456778999999999999999987765   6777889999999999999999999999999874   466677777664


Q ss_pred             cC--------CHHHHHHHHHHHhhcCCCCHH-----------------HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         81 EG--------DYAKAVFCMEELFLHHPHNHL-----------------LHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        81 ~~--------~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      .=        -...|+..|+..+...|++..                 --..+|..|.+.|   .+..|+..++.+++..
T Consensus       121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~---~~~AA~nR~~~v~e~y  197 (254)
T COG4105         121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG---AYVAAINRFEEVLENY  197 (254)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHhcc
Confidence            32        246788899999999998743                 1245688888889   9999999999999988


Q ss_pred             ccc---HHHHHHHHHHHHHhhhhhhhh
Q psy12642        136 EKN---IRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus       136 p~~---~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      |+.   ..++..+..+|..+|-.++|.
T Consensus       198 ~~t~~~~eaL~~l~eaY~~lgl~~~a~  224 (254)
T COG4105         198 PDTSAVREALARLEEAYYALGLTDEAK  224 (254)
T ss_pred             ccccchHHHHHHHHHHHHHhCChHHHH
Confidence            763   468888999999999888883

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.06  E-value=1.6e-08  Score=85.17  Aligned_cols=150  Identities=11%  Similarity=0.035  Sum_probs=100.8

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHh
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKID--ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TDQETWQELCDLYLS   80 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~   80 (201)
                      ..|.+|.+.|+.++|++.|+++.+..  |+ ..++..+...+...|..++|..+|+...+..+  .+...|..+...+.+
T Consensus       396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r  474 (697)
T PLN03081        396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR  474 (697)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence            34555666666666666666665532  33 34444555556666666666666666654322  223456666777777


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      .|++++|.+.+++. ...| +...|..+...+...|   +++.|...+++.+.+.|++...+..++.+|...|+.++|..
T Consensus       475 ~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g---~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~  549 (697)
T PLN03081        475 EGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHK---NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK  549 (697)
T ss_pred             cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC---CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence            77777777777653 2233 3556777777777788   88888888888888888888888888888888888888855

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.05  E-value=8.8e-09  Score=68.17  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=87.2

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHh
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLS   80 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~   80 (201)
                      +...++.|+|++|++.|+.+....|..   ..+...++.+|+..+++++|+..+++.++++|++   +.+++..|.+++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            455788999999999999999988754   4888899999999999999999999999999988   4578889999998


Q ss_pred             cCC---------------HHHHHHHHHHHhhcCCCCHHH
Q psy12642         81 EGD---------------YAKAVFCMEELFLHHPHNHLL  104 (201)
Q Consensus        81 ~~~---------------~~~A~~~~~~al~~~~~~~~~  104 (201)
                      +..               ...|...|++++...|++..+
T Consensus        97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            876               889999999999999998654

>KOG2376|consensus

Probab=99.03  E-value=1.7e-07  Score=74.49  Aligned_cols=151  Identities=16%  Similarity=0.087  Sum_probs=115.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      -+..+...++|++|+....+++...|++..+......+....++|++|+...+.-...... ....+..+.|.++++..+
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~D   96 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLD   96 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHH
Confidence            3455677899999999999999999999999999999999999999998655543322211 223367888889999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc----------------------------
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK----------------------------  137 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----------------------------  137 (201)
                      +|+.+++   ..++.+..+....|+++++++   +|++|++.|+..++.+.+                            
T Consensus        97 ealk~~~---~~~~~~~~ll~L~AQvlYrl~---~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v  170 (652)
T KOG2376|consen   97 EALKTLK---GLDRLDDKLLELRAQVLYRLE---RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV  170 (652)
T ss_pred             HHHHHHh---cccccchHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence            9998888   456777778888899999999   999999888887543311                            


Q ss_pred             ---cHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642        138 ---NIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       138 ---~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                         ....+|+.+.++...|++.+|.....
T Consensus       171 ~e~syel~yN~Ac~~i~~gky~qA~elL~  199 (652)
T KOG2376|consen  171 PEDSYELLYNTACILIENGKYNQAIELLE  199 (652)
T ss_pred             CcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence               33466778888888888888866443

>KOG4340|consensus

Probab=99.02  E-value=1.3e-08  Score=74.91  Aligned_cols=151  Identities=15%  Similarity=0.063  Sum_probs=128.9

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..+.+..+|..|++++....+..|.+...+..+|.||....++..|..+|++.-...|......+..++.+++.+.+..
T Consensus        17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence            34467788999999999999999999999999999999999999999999999999999988888888888888888888


Q ss_pred             HHHHHHHHhh----------------c--------------CC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642         87 AVFCMEELFL----------------H--------------HP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus        87 A~~~~~~al~----------------~--------------~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                      |+.+......                -              -|  ++.....+.|.+.++.|   +++.|++-|+.+++.
T Consensus        97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg---qyEaAvqkFqaAlqv  173 (459)
T KOG4340|consen   97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG---QYEAAVQKFQAALQV  173 (459)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc---cHHHHHHHHHHHHhh
Confidence            8776553322                1              12  33456677788888888   999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        135 NEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       135 ~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      ..-++..-++++.|..+.+++..|..
T Consensus       174 sGyqpllAYniALaHy~~~qyasALk  199 (459)
T KOG4340|consen  174 SGYQPLLAYNLALAHYSSRQYASALK  199 (459)
T ss_pred             cCCCchhHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999888854

>PLN03077 Protein ECB2; Provisional

Probab=99.01  E-value=3.6e-08  Score=84.97  Aligned_cols=150  Identities=9%  Similarity=0.115  Sum_probs=112.7

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHh
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKID--ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TDQETWQELCDLYLS   80 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~   80 (201)
                      ..+.+|...|+.++|++.|+++.+..  |+. .++..+...+.+.|.+++|..+|+...+..+  .+...|..+..++.+
T Consensus       559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r  637 (857)
T PLN03077        559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR  637 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence            45667778888888888888877643  544 3444555667778888888888888774332  245677778888888


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      .|++++|...+++. ...|+ +..|..+-..+...+   +.+.+....++.++++|+++..+..++.+|...|+++++..
T Consensus       638 ~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~---~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~  712 (857)
T PLN03077        638 AGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHR---HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR  712 (857)
T ss_pred             CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence            88888888888875 24454 556666666667777   88888888888899999999889999999999999888855

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.01  E-value=2.6e-08  Score=74.94  Aligned_cols=179  Identities=17%  Similarity=0.091  Sum_probs=123.8

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcC-----cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CC----HHHHHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKID-----ET-NTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TD----QETWQEL   74 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~-----~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~~~~l   74 (201)
                      +..|...+++++|.+.|.++....     +. -...+...+.++... ++++|+..+++++...-  ++    ..++..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            445667889999999999887643     22 224555666666555 99999999999998632  22    4577889


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHhhcCC--CC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------cH-H
Q psy12642         75 CDLYLSE-GDYAKAVFCMEELFLHHP--HN----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------NI-R  140 (201)
Q Consensus        75 ~~~~~~~-~~~~~A~~~~~~al~~~~--~~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~-~  140 (201)
                      |.+|... |++++|+++|++++....  +.    ...+..+|.++...+   +|++|++.|+++....-+      .. .
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~---~y~~A~~~~e~~~~~~l~~~l~~~~~~~  197 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG---RYEEAIEIYEEVAKKCLENNLLKYSAKE  197 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhhcccccchhHHH
Confidence            9999998 999999999999998632  22    236778999999999   999999999999875421      12 3


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHHHH-------HHhHHHHHHHHHHHHhhhcchH
Q psy12642        141 ALYGLALSCHQVLTSAKCSAAKKKEIS-------KQMMWVSKHLARQYEEQQGNTE  189 (201)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~l~~~y~~~~~~~~  189 (201)
                      .+...+.|+...|+...|.........       .-+......|.+.|...+....
T Consensus       198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f  253 (282)
T PF14938_consen  198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAF  253 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHH
Confidence            456788899999998888665554432       1223345567777877666554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.01  E-value=4.6e-08  Score=79.11  Aligned_cols=133  Identities=13%  Similarity=-0.077  Sum_probs=106.2

Q ss_pred             cCcccHHHHH--HHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHh
Q psy12642         29 IDETNTAARK--RKICILKAKNK---IPEAIKELTEYLKKFMTDQETWQELCDLYLSEG--------DYAKAVFCMEELF   95 (201)
Q Consensus        29 ~~~~~~~~~~--~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al   95 (201)
                      ..|.++.+|-  ..|.-+...++   ...|+.+|+++++.+|++..++..++.++....        +...+....++++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            3456655544  45555555544   789999999999999999999998888775432        3456666677766


Q ss_pred             hc--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642         96 LH--HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus        96 ~~--~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      ..  +|.++.++..+|..+...|   ++++|...+++++.++|+ ..+|..+|.++...|+.++|.....+.
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g---~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKG---KTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            64  7778889999999999999   999999999999999995 789999999999999999997765544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.00  E-value=3.5e-08  Score=64.16  Aligned_cols=93  Identities=17%  Similarity=0.071  Sum_probs=82.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMT---DQETWQELCDL   77 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~   77 (201)
                      +-.+..+...|+.++|+.+|++++......   ..+++.+|.++...|++++|+..+++.+..+|+   +..+...++.+
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence            445677888999999999999999976443   578899999999999999999999999999998   77788888999


Q ss_pred             HHhcCCHHHHHHHHHHHhh
Q psy12642         78 YLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        78 ~~~~~~~~~A~~~~~~al~   96 (201)
                      +...|++++|+..+-.++.
T Consensus        85 L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            9999999999999988774

>KOG4234|consensus

Probab=98.99  E-value=1.6e-08  Score=70.17  Aligned_cols=97  Identities=14%  Similarity=0.155  Sum_probs=52.5

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNT-----AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      +|..|+|++|..-|..+++..|..+     .++...|.+++.++.++.|+....+++.++|....+....+.+|-++..|
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~  184 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY  184 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence            4555555555555555555554432     23334455555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQ  106 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~  106 (201)
                      ++|+..|.+.+..+|....+..
T Consensus       185 eealeDyKki~E~dPs~~ear~  206 (271)
T KOG4234|consen  185 EEALEDYKKILESDPSRREARE  206 (271)
T ss_pred             HHHHHHHHHHHHhCcchHHHHH
Confidence            5555555555555555444333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.99  E-value=3.6e-08  Score=83.12  Aligned_cols=147  Identities=14%  Similarity=0.036  Sum_probs=78.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcC
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSEG   82 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~   82 (201)
                      ..+.+|.+.|++++|+..|++..+.. .-+..++..+...+...|++++|...+...++.. +.+..++..+...|.+.|
T Consensus       295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G  374 (697)
T PLN03081        295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG  374 (697)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC
Confidence            35566667777777777777765533 1234455555666666666666666666655543 334445555555555555


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--CcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--NEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      ++++|...|++...   .|...|..+...|...|   +.++|++.|++..+.  .|+ ..++..+..++.+.|..++|
T Consensus       375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G---~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a  445 (697)
T PLN03081        375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHG---RGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQG  445 (697)
T ss_pred             CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHH
Confidence            55555555555432   23444555555555555   555555555554432  222 33344444444444444444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.99  E-value=8.5e-08  Score=77.28  Aligned_cols=123  Identities=13%  Similarity=-0.006  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      ++++.++..|...|++++|+.+++++|...|+.++.+...|.++-..|++.+|..+++.+..+++.|-......+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHHHHHHHHHHcCC--cc-c----HHHH--HHHHHHHHHhhhhhhhhh
Q psy12642        115 QGGLENIELAISHYLMAINLN--EK-N----IRAL--YGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~al~~~--p~-~----~~~~--~~l~~~~~~~~~~~~a~~  160 (201)
                      .|   +.++|.+.+....+.+  |. +    .-.|  ...|.+|.+.|++..|..
T Consensus       275 a~---~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk  326 (517)
T PF12569_consen  275 AG---RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK  326 (517)
T ss_pred             CC---CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99   9999999988766554  21 1    1133  457889999999988855

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4648|consensus

Probab=98.98  E-value=3.6e-09  Score=79.06  Aligned_cols=103  Identities=17%  Similarity=0.043  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      ....|..|+.+|+|++|+.+|.+.+..+|.++..+...+.+|++++.|..|...++.++.++.....++.+.+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34568888999999999999999999999998888889999999999999999999999998888888999999988999


Q ss_pred             CcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642        117 GLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus       117 ~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                         ...+|.+-++.++++.|++.+.-
T Consensus       180 ---~~~EAKkD~E~vL~LEP~~~ELk  202 (536)
T KOG4648|consen  180 ---NNMEAKKDCETVLALEPKNIELK  202 (536)
T ss_pred             ---hHHHHHHhHHHHHhhCcccHHHH
Confidence               89999999999999999865543

>KOG4648|consensus

Probab=98.97  E-value=3.8e-09  Score=78.97  Aligned_cols=105  Identities=17%  Similarity=0.112  Sum_probs=97.0

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..||++|.|++|+.+|.+.+..+|.++..+..++..|++.+.+..|...++.++.++.....+|...|.+...+|...+
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E  183 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME  183 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            45689999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADI  111 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~  111 (201)
                      |.+.++.++.+.|++..+.-.++.+
T Consensus       184 AKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  184 AKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHhHHHHHhhCcccHHHHHHHHHh
Confidence            9999999999999987765555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.96  E-value=6.6e-08  Score=73.38  Aligned_cols=120  Identities=16%  Similarity=0.083  Sum_probs=63.8

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642         32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI  111 (201)
Q Consensus        32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  111 (201)
                      +++.....++.-+...|+.++|.++..++++..-+ +.....++  ...-+++.+=++..++.++..|+++..+..+|..
T Consensus       261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L  337 (400)
T COG3071         261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL  337 (400)
T ss_pred             cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            44455555555555556666666555555554322 22222222  1244555555555555555556555555556665


Q ss_pred             HHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642        112 LYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       112 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      +++.+   .+.+|..+|+.+++..|+ ...+..++.++-+.|+..+|
T Consensus       338 ~~k~~---~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         338 ALKNK---LWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             HHHhh---HHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence            55555   566666666655555554 33445555555555555555

>PRK11906 transcriptional regulator; Provisional

Probab=98.96  E-value=3.5e-08  Score=76.92  Aligned_cols=118  Identities=10%  Similarity=0.043  Sum_probs=101.4

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCME   92 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   92 (201)
                      ..+..+|.+.-+++++.+|.++.++..+|.+....++++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..++
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCHHHH-HHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642         93 ELFLHHPHNHLLH-QRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        93 ~al~~~~~~~~~~-~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      +++.++|.-..+- ..+-.-.+...   ..++|++.|-+--+
T Consensus       397 ~alrLsP~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  435 (458)
T PRK11906        397 KSLQLEPRRRKAVVIKECVDMYVPN---PLKNNIKLYYKETE  435 (458)
T ss_pred             HHhccCchhhHHHHHHHHHHHHcCC---chhhhHHHHhhccc
Confidence            9999999765433 33333134444   58999998876543

>KOG3785|consensus

Probab=98.94  E-value=7.7e-08  Score=72.43  Aligned_cols=150  Identities=15%  Similarity=0.074  Sum_probs=119.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------hcC------
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK--------------KFM------   65 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------~~p------   65 (201)
                      .+.+++..|+|++|+..|.-+...+..+...+..++.+++-+|.+.+|.....++-+              .+.      
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~  142 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT  142 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence            356789999999999999999988877788999999999999999999877665321              110      


Q ss_pred             ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642         66 ------TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        66 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                            +..+-...++.+++..-.|++|+.+|.+.+..+|+.......++.|++++.   -++-+.+.+.-.++.-|+.+
T Consensus       143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD---Yydvsqevl~vYL~q~pdSt  219 (557)
T KOG3785|consen  143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD---YYDVSQEVLKVYLRQFPDST  219 (557)
T ss_pred             HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc---hhhhHHHHHHHHHHhCCCcH
Confidence                  111223346667777778999999999999999999999999999999999   99999999999999999988


Q ss_pred             HHHHHHHHHHHHhhhhhhh
Q psy12642        140 RALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       140 ~~~~~l~~~~~~~~~~~~a  158 (201)
                      -+....+-...++-+-.-+
T Consensus       220 iA~NLkacn~fRl~ngr~a  238 (557)
T KOG3785|consen  220 IAKNLKACNLFRLINGRTA  238 (557)
T ss_pred             HHHHHHHHHHhhhhccchh
Confidence            8876666555554433333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.93  E-value=4.8e-07  Score=68.81  Aligned_cols=178  Identities=13%  Similarity=0.038  Sum_probs=108.2

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK-----------------------   63 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------------------   63 (201)
                      ..-+...|++..|....+++++..|.++.+......+|...|++.....++.+..+.                       
T Consensus       160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~  239 (400)
T COG3071         160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA  239 (400)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence            334555666666666666666666666666666666666666666555555442211                       


Q ss_pred             -cC------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642         64 -FM------------------TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA  124 (201)
Q Consensus        64 -~p------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A  124 (201)
                       ++                  +++.+...++.-+...|++++|.+..+++++..-+ +.....++.  ..-+   +...=
T Consensus       240 ~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~~--l~~~---d~~~l  313 (400)
T COG3071         240 RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIPR--LRPG---DPEPL  313 (400)
T ss_pred             hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHhh--cCCC---CchHH
Confidence             00                  11223333444455666666666666666655433 223333332  2334   67778


Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH-HHhHHHHHHHHHHHHhhhcchHH
Q psy12642        125 ISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS-KQMMWVSKHLARQYEEQQGNTET  190 (201)
Q Consensus       125 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~y~~~~~~~~~  190 (201)
                      ++..++.++..|+++..+..||..|.+.+.+.+|....+.... .........+.+.|.+......+
T Consensus       314 ~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         314 IKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence            8999999999999999999999999999999999776664432 12222333456666665555553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.93  E-value=8.8e-09  Score=80.06  Aligned_cols=68  Identities=13%  Similarity=0.091  Sum_probs=43.9

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET---WQELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      +|+++..+..+|.++...|++++|+..|++++.++|++..+   |+++|.+|..+|++++|+.++++++..
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45666666666666666666666666666666666666533   666666666666666666666666665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.90  E-value=1.5e-07  Score=70.74  Aligned_cols=136  Identities=17%  Similarity=0.099  Sum_probs=114.5

Q ss_pred             chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642          2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA-KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS   80 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~   80 (201)
                      ++|.|+....+.+..+.|...|.++++..+....+|...|.+-+. .++.+.|..+|+.+++..|.+..+|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            577788888888889999999999997777778899999999777 5666669999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNH---LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      .|+.+.|...|++++..-|...   .+|......-...|   +.+...+..+++.+..|++..
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G---dl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG---DLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-H
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999998876654   58888888888899   999999999999998887443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.90  E-value=1.5e-08  Score=78.87  Aligned_cols=69  Identities=14%  Similarity=-0.041  Sum_probs=57.7

Q ss_pred             hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHH---HHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642         63 KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL---HQRYADILYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                      .+|+++..|+.+|.+|+..|+|++|+..|++++.++|++..+   ++++|.+|..+|   ++++|+.++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG---r~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE---EGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Confidence            568888888888888888888888888888888888888744   888888888888   888888888888886

>KOG2376|consensus

Probab=98.89  E-value=1.9e-07  Score=74.24  Aligned_cols=148  Identities=19%  Similarity=0.102  Sum_probs=106.7

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A   87 (201)
                      +++.+.+.|++|+...++-...... ....+..+.|.+++|..++|+..++   -.++.+..+....|++++++|+|++|
T Consensus        54 ValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydea  129 (652)
T KOG2376|consen   54 VALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEA  129 (652)
T ss_pred             hhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHH
Confidence            5677888888888554443322212 2223678888999999999988888   35566666777888899999999999


Q ss_pred             HHHHHHHhhcCCC-------------------------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642         88 VFCMEELFLHHPH-------------------------------NHLLHQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus        88 ~~~~~~al~~~~~-------------------------------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                      +..|+..++.+.+                               +...+++.+.++...|   +|.+|++.+++++++.-
T Consensus       130 ldiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g---ky~qA~elL~kA~~~~~  206 (652)
T KOG2376|consen  130 LDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG---KYNQAIELLEKALRICR  206 (652)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHH
Confidence            9988887544322                               3446788888889999   99999999999943321


Q ss_pred             -------cc--------HHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642        137 -------KN--------IRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       137 -------~~--------~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                             .+        ......++-++..+|+..+|...+
T Consensus       207 e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  207 EKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             HhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence                   11        135678888999999999996633

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.89  E-value=1e-08  Score=72.09  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY  113 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  113 (201)
                      ...++.+|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+|+.|.+.|+..++++|.+..+..+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            46677788888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642        114 TQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus       114 ~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      .-|   ++.-|.+-+.+-.+.+|++|-
T Consensus       145 Y~g---R~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         145 YGG---RYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             ecC---chHhhHHHHHHHHhcCCCChH
Confidence            999   999999999999999998874

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.88  E-value=4.2e-08  Score=67.13  Aligned_cols=99  Identities=16%  Similarity=0.075  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC--
Q psy12642         50 IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD----------YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG--  117 (201)
Q Consensus        50 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--  117 (201)
                      ++.|.+.++.....+|.|++.+...|.++..+.+          +++|+.-|++++.++|+...++.++|.++...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            3455555555566666666655555555444322          3556666677777777777777777777766541  


Q ss_pred             ------cccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642        118 ------LENIELAISHYLMAINLNEKNIRALYGLALS  148 (201)
Q Consensus       118 ------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  148 (201)
                            ...+++|..+|+++...+|++......|.++
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                  0147888888888888888876655555444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3081|consensus

Probab=98.86  E-value=5e-07  Score=65.46  Aligned_cols=142  Identities=23%  Similarity=0.178  Sum_probs=118.9

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cC
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EG   82 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~   82 (201)
                      ++-+...|++++|+...+..     .+..+...-..++.++.+.+-|...+++..+.+.+  .....|+..|..    .+
T Consensus       115 a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~gge  187 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGE  187 (299)
T ss_pred             hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccch
Confidence            44567789999999887762     44556666677888899999999999988876543  445556666553    45


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      .+.+|..+|++.-...|..+......+.++..++   ++++|...++.++..+++++..+.++..+....|...++
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~---~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~  260 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG---RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV  260 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc---CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence            6899999999999988889999999999999999   999999999999999999999999999999999987666

>KOG2796|consensus

Probab=98.84  E-value=2.8e-07  Score=66.83  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=113.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQELCDLY   78 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~   78 (201)
                      ++-.+.-.|.|.-.+..++++++.+ |.++.....+|.+.++.|+.+.|..+++..-+.      ......+....+.+|
T Consensus       183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~  262 (366)
T KOG2796|consen  183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH  262 (366)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence            4455667788999999999999988 678888888999999999999999988854332      123345666778888


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc---HHHHHHHHHHH
Q psy12642         79 LSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALSC  149 (201)
Q Consensus        79 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~  149 (201)
                      ..++++..|...+.+.+..+|.++.+..+.|.|+...|   +..+|++..+.+++..|..   ....++|..+|
T Consensus       263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg---~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG---KLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             ecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH---HHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999   9999999999999999863   23444554444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.84  E-value=7e-08  Score=66.04  Aligned_cols=97  Identities=19%  Similarity=0.141  Sum_probs=76.1

Q ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-
Q psy12642         15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNK----------IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD-   83 (201)
Q Consensus        15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-   83 (201)
                      -|+.|.+.++.....+|.++..+..=|.++..+.+          +++|+.-|++++.++|+..+++..+|.+|...+. 
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            37889999999999999999988888887776643          4667888889999999999999999999887653 


Q ss_pred             ----------HHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642         84 ----------YAKAVFCMEELFLHHPHNHLLHQRYADI  111 (201)
Q Consensus        84 ----------~~~A~~~~~~al~~~~~~~~~~~~la~~  111 (201)
                                |++|..+|+++...+|+|..+...+..+
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                      7889999999999999998777666554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4555|consensus

Probab=98.84  E-value=2.9e-07  Score=59.72  Aligned_cols=109  Identities=13%  Similarity=0.034  Sum_probs=69.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHH
Q psy12642         39 RKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH----LLHQRYADILYT  114 (201)
Q Consensus        39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~  114 (201)
                      ..|......|+.+.|++.|.+++..-|..+.+|.+.++.+.-+|+.++|+..+++++.+..+..    .++...|.+|..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            4455666667777777777777777777777777777777777777777777777776644322    245666667666


Q ss_pred             cCCcccHHHHHHHHHH------------HHcCCcccHHHHHHHHHHHH
Q psy12642        115 QGGLENIELAISHYLM------------AINLNEKNIRALYGLALSCH  150 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~------------al~~~p~~~~~~~~l~~~~~  150 (201)
                      .|   +-+.|..-|+.            .+.++|.-.-.-..|+.++.
T Consensus       128 ~g---~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~  172 (175)
T KOG4555|consen  128 LG---NDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFD  172 (175)
T ss_pred             hC---chHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            66   66666655543            35666665555555555544

>PLN03077 Protein ECB2; Provisional

Probab=98.83  E-value=1e-06  Score=76.14  Aligned_cols=173  Identities=12%  Similarity=-0.014  Sum_probs=121.0

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCC
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--FMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~   83 (201)
                      .+..|.+.|+.++|...|+..    +.+...|..+...|...|+.++|+..|++..+.  .|+. ..+..+-..+.+.|.
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~  604 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGM  604 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcCh
Confidence            456677888899998888875    456778888888899999999999999987763  3543 445555567888899


Q ss_pred             HHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         84 YAKAVFCMEELFLHHP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      +++|..+|+......+  .+...+..+...+.+.|   ++++|.+.+++. ...|+ ...|..|...+..-++.+.+...
T Consensus       605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G---~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~  679 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG---KLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELA  679 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Confidence            9999999988874332  23567888888889999   999999988874 45565 66777777777777776665332


Q ss_pred             hHHHHHHHhH---HHHHHHHHHHHhhhcchH
Q psy12642        162 KKKEISKQMM---WVSKHLARQYEEQQGNTE  189 (201)
Q Consensus       162 ~~~~~~~~~~---~~~~~l~~~y~~~~~~~~  189 (201)
                      .++. .++.+   .....+...|.....+++
T Consensus       680 a~~l-~~l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        680 AQHI-FELDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             HHHH-HhhCCCCcchHHHHHHHHHHCCChHH
Confidence            2111 12222   122335566766666555

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.83  E-value=5.8e-06  Score=58.87  Aligned_cols=158  Identities=22%  Similarity=0.155  Sum_probs=123.8

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHhcC
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIK--IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCD-LYLSEG   82 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~   82 (201)
                      ....+...+++..+...+...+.  ..+.....+...+......+++..++..+..++...+.+.......+. ++...|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (291)
T COG0457          65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG  144 (291)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC
Confidence            44556677888888888888887  677788888888888888888999999999888877776555555556 788899


Q ss_pred             CHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHP---HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-NIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      +++.|...+.+++...|   .........+..+...+   +++.++..+.+++...|. ....+..++.++...+....+
T Consensus       145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  221 (291)
T COG0457         145 DYEEALELYEKALELDPELNELAEALLALGALLEALG---RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA  221 (291)
T ss_pred             CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc---CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence            99999999998887666   34555666666667777   889999999999998888 688888888888888877777


Q ss_pred             hhhhHHHH
Q psy12642        159 SAAKKKEI  166 (201)
Q Consensus       159 ~~~~~~~~  166 (201)
                      ........
T Consensus       222 ~~~~~~~~  229 (291)
T COG0457         222 LEYYEKAL  229 (291)
T ss_pred             HHHHHHHH
Confidence            55444443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.82  E-value=1.4e-08  Score=61.22  Aligned_cols=64  Identities=17%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKK---FMT----DQETWQELCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      -..++..+|.+|..+|++++|+..++++++.   .++    ...++..+|.++..+|++++|+.++++++.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444555555555555555555555555542   111    123444455555555555555555555543

...

>KOG1915|consensus

Probab=98.81  E-value=2e-06  Score=67.17  Aligned_cols=158  Identities=11%  Similarity=0.047  Sum_probs=128.2

Q ss_pred             chHHHHHhhhhccCHHHHHHHHHHHHhcCcccH--HHHHHHHH-----H---HHHcCCHHHHHHHHHHHHHhcCCC----
Q psy12642          2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNT--AARKRKIC-----I---LKAKNKIPEAIKELTEYLKKFMTD----   67 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~a~-----~---~~~~~~~~~A~~~~~~~~~~~p~~----   67 (201)
                      +++-|+.-....|+.++..+.|++++...|-..  ..|.+...     +   -+...+.+.+...|+.++++-|..    
T Consensus       324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtF  403 (677)
T KOG1915|consen  324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTF  403 (677)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchH
Confidence            345566556667999999999999999877533  22222221     1   124688999999999999999875    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL  147 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  147 (201)
                      +.+|...+....++.+...|.+.+-.+|...|.+. ..-.+..+-...+   +++.+...|++-++-+|.+-.+|...+.
T Consensus       404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~---efDRcRkLYEkfle~~Pe~c~~W~kyaE  479 (677)
T KOG1915|consen  404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLR---EFDRCRKLYEKFLEFSPENCYAWSKYAE  479 (677)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHh---hHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence            67888899999999999999999999999999854 4555566677888   9999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhH
Q psy12642        148 SCHQVLTSAKCSAAKK  163 (201)
Q Consensus       148 ~~~~~~~~~~a~~~~~  163 (201)
                      .-..+|+.++++.-..
T Consensus       480 lE~~LgdtdRaRaife  495 (677)
T KOG1915|consen  480 LETSLGDTDRARAIFE  495 (677)
T ss_pred             HHHHhhhHHHHHHHHH
Confidence            9999999999977443

>KOG4555|consensus

Probab=98.80  E-value=3.7e-07  Score=59.22  Aligned_cols=103  Identities=16%  Similarity=0.090  Sum_probs=82.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH----HHHHHHHH
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI----RALYGLAL  147 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~  147 (201)
                      -.-|......|+.+.|++.|.+++.+.|..+.++.+.++++.-.|   +.++|++-+++++++..+..    .++...+.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~---~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQG---DDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC---ChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            345777778899999999999999999999999999999999999   99999999999998876533    47889999


Q ss_pred             HHHHhhhhhhhhhhhHHHHHHHhHHHHHHH
Q psy12642        148 SCHQVLTSAKCSAAKKKEISKQMMWVSKHL  177 (201)
Q Consensus       148 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l  177 (201)
                      +|...|+.+.|+......++--.+.+..+|
T Consensus       124 lyRl~g~dd~AR~DFe~AA~LGS~FAr~QL  153 (175)
T KOG4555|consen  124 LYRLLGNDDAARADFEAAAQLGSKFAREQL  153 (175)
T ss_pred             HHHHhCchHHHHHhHHHHHHhCCHHHHHHH
Confidence            999999999997766555443334444433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.80  E-value=5.9e-07  Score=61.92  Aligned_cols=122  Identities=19%  Similarity=0.168  Sum_probs=106.3

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcC
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIK-IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD--QETWQELCDLYLSEG   82 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~   82 (201)
                      .+..+...|++.+|...|++++. ....++..+..++...+..+++..|...+++..+.+|..  ++....+|..+-.+|
T Consensus        95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g  174 (251)
T COG4700          95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG  174 (251)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence            55678889999999999999987 456788999999999999999999999999999988764  677888999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      .+.+|...|+.++...|+ +.....++..+.++|   +.+++..-+...
T Consensus       175 ~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qg---r~~ea~aq~~~v  219 (251)
T COG4700         175 KYADAESAFEVAISYYPG-PQARIYYAEMLAKQG---RLREANAQYVAV  219 (251)
T ss_pred             CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc---chhHHHHHHHHH
Confidence            999999999999999988 778888999999999   777765554443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.77  E-value=7.6e-07  Score=62.87  Aligned_cols=94  Identities=11%  Similarity=-0.027  Sum_probs=87.6

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      |-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+++.|.+.|+..++++|..--+..+.|..++.-|+++-|..
T Consensus        75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~  154 (297)
T COG4785          75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD  154 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence            44567777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCHH
Q psy12642         90 CMEELFLHHPHNHL  103 (201)
Q Consensus        90 ~~~~al~~~~~~~~  103 (201)
                      .+.+.-+.+|++|.
T Consensus       155 d~~~fYQ~D~~DPf  168 (297)
T COG4785         155 DLLAFYQDDPNDPF  168 (297)
T ss_pred             HHHHHHhcCCCChH
Confidence            99999999999885

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.76  E-value=4.6e-06  Score=59.41  Aligned_cols=153  Identities=24%  Similarity=0.194  Sum_probs=126.0

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKIC-ILKAKNKIPEAIKELTEYLKKFM---TDQETWQELCDLYLSE   81 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~   81 (201)
                      ........+++..++..+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (291)
T COG0457         101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL  180 (291)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh
Confidence            3345566788999999999999988777655666666 89999999999999999988776   3456666677778889


Q ss_pred             CCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         82 GDYAKAVFCMEELFLHHPH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      ++++.++..+.+++...+. ....+..++..+...+   .++.|+..+..++...|.....+..++..+...+....+..
T Consensus       181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (291)
T COG0457         181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG---KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE  257 (291)
T ss_pred             cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc---cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence            9999999999999999999 6899999999999999   99999999999999999867777777777775554555544


Q ss_pred             h
Q psy12642        161 A  161 (201)
Q Consensus       161 ~  161 (201)
                      .
T Consensus       258 ~  258 (291)
T COG0457         258 A  258 (291)
T ss_pred             H
Confidence            3

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.76  E-value=1.1e-08  Score=61.72  Aligned_cols=68  Identities=18%  Similarity=0.253  Sum_probs=56.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CC-CC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         65 MTDQETWQELCDLYLSEGDYAKAVFCMEELFLH---HP-HN---HLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        65 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~-~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      |+-..++..+|.+|..+|++++|+.+|++++.+   .+ ++   ..++..+|.++...|   ++++|++++++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG---DYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhh
Confidence            344678899999999999999999999999965   22 22   447899999999999   9999999999998753

...

>KOG2053|consensus

Probab=98.75  E-value=6.9e-07  Score=74.14  Aligned_cols=138  Identities=20%  Similarity=0.087  Sum_probs=112.6

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      |......++|.+|+....+.++..|+...+....|.+..++|+.++|..+++..-...++|......+-.+|..+|++++
T Consensus        16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence            34567789999999999999999999999999999999999999999988888887888888888889999999999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS  148 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  148 (201)
                      |+.+|++++..+|+ ......+=.+|.+.+   .|.+-.+.--+..+..|+++-.++...-+
T Consensus        96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~---~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl  153 (932)
T KOG2053|consen   96 AVHLYERANQKYPS-EELLYHLFMAYVREK---SYKKQQKAALQLYKNFPKRAYYFWSVISL  153 (932)
T ss_pred             HHHHHHHHHhhCCc-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence            99999999999999 776666666777776   66554444444444667665544444333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.73  E-value=4.8e-07  Score=68.09  Aligned_cols=140  Identities=18%  Similarity=0.130  Sum_probs=104.3

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcC-----c-ccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCC------HHHHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKID-----E-TNTAARKRKICILKAK-NKIPEAIKELTEYLKKFMTD------QETWQEL   74 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~-----~-~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l   74 (201)
                      ..+++..++++|+.+|++++...     | .-..++..+|.+|... |++++|++.|++++.....+      ..++..+
T Consensus        82 a~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~  161 (282)
T PF14938_consen   82 ANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA  161 (282)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence            33455669999999999999853     1 2246788899999998 99999999999999864322      3567788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCC------H-HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc-----HHHH
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLHHPHN------H-LLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-----IRAL  142 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~~~~~------~-~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~  142 (201)
                      |.++...|+|++|+..|++.....-++      . ..++..+.++...|   ++..|.+.+++....+|..     ....
T Consensus       162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~---D~v~A~~~~~~~~~~~~~F~~s~E~~~~  238 (282)
T PF14938_consen  162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMG---DYVAARKALERYCSQDPSFASSREYKFL  238 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence            999999999999999999998753221      1 34567788999999   9999999999999998843     3344


Q ss_pred             HHHHHHHH
Q psy12642        143 YGLALSCH  150 (201)
Q Consensus       143 ~~l~~~~~  150 (201)
                      ..|..++.
T Consensus       239 ~~l~~A~~  246 (282)
T PF14938_consen  239 EDLLEAYE  246 (282)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            45555554

>KOG1915|consensus

Probab=98.71  E-value=1.6e-05  Score=62.29  Aligned_cols=153  Identities=13%  Similarity=0.028  Sum_probs=122.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      |+-==..++++..|...++.++..+..+...|...+.+-+..+....|...+.+++.+-|.-...|+.....--..|+..
T Consensus        79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~  158 (677)
T KOG1915|consen   79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA  158 (677)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence            33333567889999999999999999999999999999999999999999999999999988888888877777889999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      .|...|++-+...|+ ..+|......-..-+   +.+.|...|++.+-..|+ ..+|...+..-.+-|+...++....
T Consensus       159 gaRqiferW~~w~P~-eqaW~sfI~fElRyk---eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~Vye  231 (677)
T KOG1915|consen  159 GARQIFERWMEWEPD-EQAWLSFIKFELRYK---EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYE  231 (677)
T ss_pred             HHHHHHHHHHcCCCc-HHHHHHHHHHHHHhh---HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            999999999888887 667777666666666   788888888888877776 6667777777777776666655433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.70  E-value=9.6e-06  Score=58.83  Aligned_cols=106  Identities=12%  Similarity=0.062  Sum_probs=89.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH---HHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL---LHQ  106 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~  106 (201)
                      .+..++.-|...+..|++++|++.|+.+...+|.+   ..+...++.++++.++++.|+..+++.+.+.|.++.   +.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            46778889999999999999999999999998877   467888999999999999999999999999997754   566


Q ss_pred             HHHHHHHHcC-----CcccHHHHHHHHHHHHcCCccc
Q psy12642        107 RYADILYTQG-----GLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus       107 ~la~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      ..|.+++..-     ++.-...|+..|+..++..|+.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence            6677766443     2234678999999999999985

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.67  E-value=6.8e-08  Score=51.34  Aligned_cols=40  Identities=18%  Similarity=0.245  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      ++..+|..|..+|++++|+..|+++++.+|+|+.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3444445555555555555555555555555554444444

>KOG1130|consensus

Probab=98.67  E-value=1.1e-07  Score=72.81  Aligned_cols=143  Identities=11%  Similarity=0.026  Sum_probs=112.0

Q ss_pred             CHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcC
Q psy12642         15 RYEEALEHLETIIKIDET------NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLYLSEG   82 (201)
Q Consensus        15 ~~~~A~~~~~~~l~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~   82 (201)
                      .++.|.++|..-++....      -..++-.+|..|+-+|+|++|+.+-+.-+.+....      -.++..+|.+|.-.|
T Consensus       170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg  249 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG  249 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence            456677777766654322      22566678888999999999999988777654332      347888999999999


Q ss_pred             CHHHHHHHHHHHhhc----CCC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc------ccHHHHHHHHHHHH
Q psy12642         83 DYAKAVFCMEELFLH----HPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINLNE------KNIRALYGLALSCH  150 (201)
Q Consensus        83 ~~~~A~~~~~~al~~----~~~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~  150 (201)
                      +++.|+++|+..+.+    ...  .....+.+|.+|.-..   ++++|+.++.+-+.+..      ...++.|.|+..+.
T Consensus       250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~---e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~  326 (639)
T KOG1130|consen  250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLK---EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN  326 (639)
T ss_pred             ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            999999999988754    222  3457889999999999   99999999999876653      35689999999999


Q ss_pred             Hhhhhhhhhh
Q psy12642        151 QVLTSAKCSA  160 (201)
Q Consensus       151 ~~~~~~~a~~  160 (201)
                      .+|..++|..
T Consensus       327 alg~h~kAl~  336 (639)
T KOG1130|consen  327 ALGEHRKALY  336 (639)
T ss_pred             hhhhHHHHHH
Confidence            9999999854

>KOG4340|consensus

Probab=98.64  E-value=8.3e-07  Score=65.58  Aligned_cols=127  Identities=16%  Similarity=0.114  Sum_probs=105.9

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------H-------
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEY----------------L-------   61 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----------------~-------   61 (201)
                      +.+.+|+...+|..|-++|++.-...|.........+..+...+.+.+|+......                +       
T Consensus        49 lLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl  128 (459)
T KOG4340|consen   49 LLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDL  128 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccC
Confidence            35677888899999999999999999999888888888888888887777655431                1       


Q ss_pred             -------HhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         62 -------KKFM--TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        62 -------~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                             ..-|  ++.+.....|.+.++.|+++.|++-|+.+++....++..-++++.+++..+   +++.|+++....+
T Consensus       129 ~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~---qyasALk~iSEIi  205 (459)
T KOG4340|consen  129 PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR---QYASALKHISEII  205 (459)
T ss_pred             cchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh---hHHHHHHHHHHHH
Confidence                   1123  345667778899999999999999999999999999999999999999999   9999998887766


Q ss_pred             cC
Q psy12642        133 NL  134 (201)
Q Consensus       133 ~~  134 (201)
                      +.
T Consensus       206 eR  207 (459)
T KOG4340|consen  206 ER  207 (459)
T ss_pred             Hh
Confidence            53

>KOG1070|consensus

Probab=98.63  E-value=5.1e-06  Score=72.16  Aligned_cols=156  Identities=15%  Similarity=0.110  Sum_probs=99.8

Q ss_pred             chHHHHHhhhhccCHHHHHHHHHHHHhc-Cccc-------------------------------------HHHHHHHHHH
Q psy12642          2 APIVYIIGCFHFFRYEEALEHLETIIKI-DETN-------------------------------------TAARKRKICI   43 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~-------------------------------------~~~~~~~a~~   43 (201)
                      .||-|+--+...++.++|.+..+++|.. ++..                                     ..++..+..+
T Consensus      1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            4566666667777888888877777763 2211                                     1334444555


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccH
Q psy12642         44 LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENI  121 (201)
Q Consensus        44 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~  121 (201)
                      |...+++++|.++++..++.+.....+|..+|..++++++-+.|...+++|++.-|.  +.......+...++.|   +.
T Consensus      1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G---Da 1616 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG---DA 1616 (1710)
T ss_pred             HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC---Cc
Confidence            555666666666666666666666666777777777766666777777777766665  5556666666666667   66


Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        122 ELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       122 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      +.+...|+..+.-+|.-...|.-....-.+.|+.+..+.
T Consensus      1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred             hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH
Confidence            666677777777777666666666666666555555433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.62  E-value=1.4e-07  Score=50.06  Aligned_cols=42  Identities=24%  Similarity=0.183  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCD   76 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~   76 (201)
                      .++..+|..|...|++++|++.++++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            578889999999999999999999999999999999998875

>KOG0376|consensus

Probab=98.62  E-value=1.1e-07  Score=73.88  Aligned_cols=102  Identities=10%  Similarity=0.100  Sum_probs=76.5

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      .+..+.|+.|+..|.++++++|+++..+..++..+...+++..|+..+.++++.+|....+|+..|.++...+.+.+|+.
T Consensus        14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~   93 (476)
T KOG0376|consen   14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL   93 (476)
T ss_pred             hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHH
Q psy12642         90 CMEELFLHHPHNHLLHQRYADI  111 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~  111 (201)
                      .|+....+.|+++.+...+..+
T Consensus        94 ~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   94 DLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHhhhcCcCcHHHHHHHHHH
Confidence            7777777777777776666665

>KOG0376|consensus

Probab=98.61  E-value=1.2e-07  Score=73.87  Aligned_cols=113  Identities=9%  Similarity=-0.049  Sum_probs=104.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCc
Q psy12642         39 RKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL  118 (201)
Q Consensus        39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~  118 (201)
                      ..+.-++..++++.|+..+.++++++|++...+...+..+.+.+++..|+..+.++++.+|....+++..|.+....+  
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~--   86 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG--   86 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH--
Confidence            345667788999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642        119 ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus       119 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                       .+.+|+..|+....+.|+++.+...+..|-.....
T Consensus        87 -~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   87 -EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             -HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence             99999999999999999999999988888765443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.59  E-value=2.5e-06  Score=64.15  Aligned_cols=125  Identities=13%  Similarity=0.031  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS-EGDYAKAVFCMEELFLHHPHNHLLHQRYADILY  113 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  113 (201)
                      .+|..+.....+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|..+...+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3566777777777889999999999997666678899999999776 566777999999999999999999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHcCCcccH---HHHHHHHHHHHHhhhhhhhhhhh
Q psy12642        114 TQGGLENIELAISHYLMAINLNEKNI---RALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       114 ~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ..+   +.+.|...|++++..-|...   ..|......-...|+.+....-.
T Consensus        82 ~~~---d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~  130 (280)
T PF05843_consen   82 KLN---DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE  130 (280)
T ss_dssp             HTT----HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred             HhC---cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999   99999999999999877655   57777777778888766654433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4642|consensus

Probab=98.58  E-value=3e-07  Score=65.55  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=80.2

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      .|+....|+.|+..|.+++..+|+.+..+...+.++++.++++.+.....+++++.|+.....+.+|.+......|++|+
T Consensus        19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI   98 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI   98 (284)
T ss_pred             cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence            46677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q psy12642         89 FCMEELFLH   97 (201)
Q Consensus        89 ~~~~~al~~   97 (201)
                      .++.++..+
T Consensus        99 ~~Lqra~sl  107 (284)
T KOG4642|consen   99 KVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHH
Confidence            999998543

>KOG2796|consensus

Probab=98.58  E-value=7.9e-06  Score=59.46  Aligned_cols=159  Identities=11%  Similarity=0.038  Sum_probs=123.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhc------------Cccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKI------------DETN---------TAARKRKICILKAKNKIPEAIKELTEYLKK   63 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~------------~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   63 (201)
                      +++......|+..+.+.-+......            .|.+         ..+.+.+..++...|.|.-....+.+.++.
T Consensus       127 lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~  206 (366)
T KOG2796|consen  127 LHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY  206 (366)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence            4555556667777666555443321            1111         245666777888899999999999999998


Q ss_pred             c-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642         64 F-MTDQETWQELCDLYLSEGDYAKAVFCMEELFLH----H--PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus        64 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~--~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                      + |.++.....+|.+-+..|+.+.|..+|+..-+.    +  ..+..+..+.+.++.-.+   ++..|...|.+++..+|
T Consensus       207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n---n~a~a~r~~~~i~~~D~  283 (366)
T KOG2796|consen  207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN---NFAEAHRFFTEILRMDP  283 (366)
T ss_pred             CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc---chHHHHHHHhhccccCC
Confidence            8 667889999999999999999999999965533    2  234456777778888778   99999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        137 KNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      .++.+..+-+.|..-+|+...|.+......
T Consensus       284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~  313 (366)
T KOG2796|consen  284 RNAVANNNKALCLLYLGKLKDALKQLEAMV  313 (366)
T ss_pred             CchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999977555443

>KOG4642|consensus

Probab=98.56  E-value=2.1e-07  Score=66.32  Aligned_cols=92  Identities=12%  Similarity=-0.050  Sum_probs=85.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcc
Q psy12642         40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE  119 (201)
Q Consensus        40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~  119 (201)
                      .|..++.-..+..|+..|.+++..+|..+..|...+.+|++.++++.+.....++++++|+....++.+|.+.....   
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~---   92 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK---   92 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc---
Confidence            45566677889999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             cHHHHHHHHHHHHcC
Q psy12642        120 NIELAISHYLMAINL  134 (201)
Q Consensus       120 ~~~~A~~~~~~al~~  134 (201)
                      .+++|+..+.++..+
T Consensus        93 ~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   93 GYDEAIKVLQRAYSL  107 (284)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999999654

>KOG1070|consensus

Probab=98.52  E-value=1.6e-05  Score=69.27  Aligned_cols=151  Identities=19%  Similarity=0.147  Sum_probs=128.5

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcCCHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT--DQETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~A   87 (201)
                      |...+.+++|.++|+..++.-.+...+|...+..++.+++-+.|...+.++++.-|.  +..+....+++-++.|+.+.+
T Consensus      1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred             HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence            567889999999999999999889999999999999999999999999999999998  688888999999999999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC--cccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN--EKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      ...|+..+..+|.-..+|..+...-...+   +.+.+...|++++.+.  |....-++..=.-|.+.-..++.....+
T Consensus      1620 RtlfEgll~ayPKRtDlW~VYid~eik~~---~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHG---DIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred             HHHHHHHHhhCccchhHHHHHHHHHHccC---CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence            99999999999999999999999999999   9999999999999765  5555555555555554433333333333

>KOG1130|consensus

Probab=98.50  E-value=7.1e-07  Score=68.61  Aligned_cols=151  Identities=20%  Similarity=0.184  Sum_probs=108.1

Q ss_pred             hhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh
Q psy12642         10 CFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNK--------------------IPEAIKELTEYLKK   63 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~~~~   63 (201)
                      +--.|.|++|+.+..+-+...      -....+++.+|.+|...|+                    ++.|.++|..-+++
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            334688888888777766543      1234788999999988764                    34455555544443


Q ss_pred             cCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         64 FMTD------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPH------NHLLHQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        64 ~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      ....      ..++-.+|..|+-.|+|+.|+..-+.=+.+...      .-.++.++|.++...|   +++.|+++|+..
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg---~fe~A~ehYK~t  261 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG---NFELAIEHYKLT  261 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc---ccHhHHHHHHHH
Confidence            2211      235667888899999999999988776655432      1347889999999999   999999999997


Q ss_pred             HcCCc------ccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642        132 INLNE------KNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       132 l~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +.+.-      ......|.|+..|.-..++.+|+....
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~  299 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ  299 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            65432      235567899999999999999977543

>KOG2053|consensus

Probab=98.48  E-value=4.2e-06  Score=69.65  Aligned_cols=112  Identities=18%  Similarity=0.123  Sum_probs=103.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHH
Q psy12642         44 LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIEL  123 (201)
Q Consensus        44 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~  123 (201)
                      ....+++++|.....+.++..|+.+.+...-|.++.++|+.++|..+++..-...+++...+..+..+|...+   .+++
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~---~~d~   95 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG---KLDE   95 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh---hhhH
Confidence            3456899999999999999999999999999999999999999998888887888889999999999999999   9999


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642        124 AISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus       124 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      |..+|++++..+|+ ...++.+=++|.+.+++.+-.
T Consensus        96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen   96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 888999999999999887653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.45  E-value=4e-05  Score=66.71  Aligned_cols=152  Identities=12%  Similarity=-0.009  Sum_probs=117.0

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNT-----AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCD   76 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~   76 (201)
                      ..+...|++++|...++.++...+...     .+...+|.++...|++++|...+.+++......      ..+...+|.
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            445678999999999999988544322     355677888999999999999999998754321      235567899


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCC--------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc-----ccHHHHH
Q psy12642         77 LYLSEGDYAKAVFCMEELFLHHPH--------NHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-----KNIRALY  143 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~  143 (201)
                      ++...|++++|...+++++.....        .......+|.++...|   ++++|...+.+++....     ....++.
T Consensus       540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA---RLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            999999999999999999875221        1234567888999999   99999999999987532     2345667


Q ss_pred             HHHHHHHHhhhhhhhhhhh
Q psy12642        144 GLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       144 ~l~~~~~~~~~~~~a~~~~  162 (201)
                      .++.++...|+...|....
T Consensus       617 ~la~~~~~~G~~~~A~~~l  635 (903)
T PRK04841        617 MLAKISLARGDLDNARRYL  635 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            7888999999988886543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.43  E-value=3.4e-07  Score=45.63  Aligned_cols=32  Identities=28%  Similarity=0.613  Sum_probs=18.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642         57 LTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus        57 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      |+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555553

>KOG0545|consensus

Probab=98.41  E-value=6.4e-06  Score=59.28  Aligned_cols=103  Identities=17%  Similarity=0.104  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hcCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLK--------KFMTDQ----------ETWQELCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~p~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      .++...|.-++..|++++|...|..++-        ..|.++          +.+.+.++|++..|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            6677788889999999999998888764        245553          3567789999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         97 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        97 ~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      .+|+|..+++..|.++...=   +.++|..-|.++++++|.-..
T Consensus       259 ~~~~nvKA~frRakAhaa~W---n~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVW---NEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhc---CHHHHHHHHHHHHhcChhhHH
Confidence            99999999999999999988   899999999999999997433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.40  E-value=9.9e-07  Score=43.87  Aligned_cols=33  Identities=30%  Similarity=0.559  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN  101 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  101 (201)
                      .+|+.+|.+++.+|++++|+.+|++++.++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            455666666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2610|consensus

Probab=98.40  E-value=2.4e-05  Score=58.95  Aligned_cols=150  Identities=10%  Similarity=-0.088  Sum_probs=120.2

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHhcCCHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK-FMTD---QETWQELCDLYLSEGDYA   85 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~---~~~~~~l~~~~~~~~~~~   85 (201)
                      +...|++.+|...++++++..|.+.-++...-.+++..|+...-...+++.+.. +|+-   ..+.-.++..+...|-|+
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            455688999999999999999999988888888899999999988889988876 5544   333444567778899999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc----cHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK----NIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      +|.+.-.++++++|.+..+....+.++...+   ++.++.+...+.-..-..    -...|+..+.++..-+.+++|...
T Consensus       193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~---r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWASHAKAHVLEMNG---RHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             hHHHHHHhhccCCCcchHHHHHHHHHHHhcc---hhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            9999999999999999999999999999999   999999988765332211    123567788888888888888553


Q ss_pred             h
Q psy12642        162 K  162 (201)
Q Consensus       162 ~  162 (201)
                      .
T Consensus       270 y  270 (491)
T KOG2610|consen  270 Y  270 (491)
T ss_pred             H
Confidence            3

>KOG2471|consensus

Probab=98.40  E-value=2.4e-06  Score=67.01  Aligned_cols=141  Identities=17%  Similarity=0.139  Sum_probs=115.0

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCC--------CHHHHHHHHHHHHh
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEY-LKKFMT--------DQETWQELCDLYLS   80 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~p~--------~~~~~~~l~~~~~~   80 (201)
                      +.+..+..-+....+.+.....+.+.+....+..++..|++.+|.+.+... +...|.        ..-+|..+|.+++.
T Consensus       216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~  295 (696)
T KOG2471|consen  216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ  295 (696)
T ss_pred             HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence            455566677777777777777788899999999999999999999987653 333333        23367889999999


Q ss_pred             cCCHHHHHHHHHHHhh-c--------CC---------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642         81 EGDYAKAVFCMEELFL-H--------HP---------HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~-~--------~~---------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                      .|.|.-+..+|.+++. .        .|         ......++.|..+...|   +.-.|.++|.+++...-.+|+.|
T Consensus       296 ~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g---rPl~AfqCf~~av~vfh~nPrlW  372 (696)
T KOG2471|consen  296 LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG---RPLLAFQCFQKAVHVFHRNPRLW  372 (696)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC---CcHHHHHHHHHHHHHHhcCcHHH
Confidence            9999999999999995 1        11         23457899999999999   99999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy12642        143 YGLALSCHQVL  153 (201)
Q Consensus       143 ~~l~~~~~~~~  153 (201)
                      ..++.|+....
T Consensus       373 LRlAEcCima~  383 (696)
T KOG2471|consen  373 LRLAECCIMAL  383 (696)
T ss_pred             HHHHHHHHHHh
Confidence            99999998643

>KOG0551|consensus

Probab=98.38  E-value=6.6e-05  Score=56.38  Aligned_cols=104  Identities=17%  Similarity=0.133  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD  110 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  110 (201)
                      .-+..-|.-|+..++|..|+..|.+.++..-.|    ...|.+.+-+.+..|+|..|+....+++..+|.+..++.+-+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            445556888999999999999999999976555    4568888999999999999999999999999999999999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642        111 ILYTQGGLENIELAISHYLMAINLNEKNIRA  141 (201)
Q Consensus       111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  141 (201)
                      |++.+.   .+.+|+.+.+..++++.+.-.+
T Consensus       162 c~~eLe---~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  162 CLLELE---RFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             HHHHHH---HHHHHHHHHhhhhhhhHHHHHH
Confidence            999999   9999999999999888664443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.38  E-value=8.1e-07  Score=44.27  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  100 (201)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35566666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.36  E-value=0.00025  Score=57.24  Aligned_cols=143  Identities=17%  Similarity=0.023  Sum_probs=107.2

Q ss_pred             ccCHHHHHHHHHHHHhcCc-ccHHHH------HHHHHHHH----HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642         13 FFRYEEALEHLETIIKIDE-TNTAAR------KRKICILK----AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE   81 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~-~~~~~~------~~~a~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~   81 (201)
                      .||-+.++..+.++.+... ..+.+-      +.....+.    .....+.|.+.+.......|+..-..+..|.++...
T Consensus       201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~  280 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK  280 (468)
T ss_pred             CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            4899999999999887332 122111      11111111    234678899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH-HHHHHHHHHHhhhhh
Q psy12642         82 GDYAKAVFCMEELFLHHPH----NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA-LYGLALSCHQVLTSA  156 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~  156 (201)
                      |+.++|+..|++++.....    ....++.++.++....   +|++|..+|.+..+.+...... .|..|-|+...|+.+
T Consensus       281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~---~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~  357 (468)
T PF10300_consen  281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH---DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE  357 (468)
T ss_pred             cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence            9999999999998853332    2346788999999999   9999999999999987764443 355677777788773


Q ss_pred             hh
Q psy12642        157 KC  158 (201)
Q Consensus       157 ~a  158 (201)
                      .+
T Consensus       358 ~~  359 (468)
T PF10300_consen  358 EA  359 (468)
T ss_pred             hh
Confidence            33

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.33  E-value=0.00042  Score=60.45  Aligned_cols=155  Identities=14%  Similarity=0.011  Sum_probs=116.4

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDET---------NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-----ET   70 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~   70 (201)
                      ..+..+...|++++|...+..+....+.         ...+...++.++...|++++|...+++++...|...     .+
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a  493 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA  493 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            3455567789999999999988654221         124445567888899999999999999988655432     34


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-------
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELFLHHPH--N----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-------  137 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-------  137 (201)
                      ...+|.++...|++++|...+++++.....  +    ......+|.++...|   +++.|...+.+++.....       
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG---FLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcccccc
Confidence            566888999999999999999999865332  1    235677899999999   999999999998875321       


Q ss_pred             -cHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642        138 -NIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       138 -~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                       ....+..++.++...|+.++|....
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~  596 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCA  596 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence             1234557788888899999886543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.33  E-value=1.7e-05  Score=63.89  Aligned_cols=119  Identities=18%  Similarity=0.072  Sum_probs=98.8

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      ..+.+.|.+.++...+..|+.....+..|.++...|+.++|++.+++++.....-    .-.++.+|.++..+.+|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4677889999999999999999999999999999999999999999888533222    346778999999999999999


Q ss_pred             HHHHHHhhcCCCCH-HHHHHHHHHHHHcCCcccH-------HHHHHHHHHHHcC
Q psy12642         89 FCMEELFLHHPHNH-LLHQRYADILYTQGGLENI-------ELAISHYLMAINL  134 (201)
Q Consensus        89 ~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~~-------~~A~~~~~~al~~  134 (201)
                      .+|.+.++.+.-+. .+.+..|.++...+   +.       ++|...|.++-..
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~---~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLG---REEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhc---cchhhhhhHHHHHHHHHHHHHH
Confidence            99999998776543 35566788888888   66       8888888876543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=9.5e-05  Score=54.77  Aligned_cols=142  Identities=15%  Similarity=0.058  Sum_probs=72.1

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHhcCCHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC--DLYLSEGDYAK   86 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~~   86 (201)
                      .....|++.+|...|..++...|.+..+...++.++...|+.+.|...+...-.....+. .....+  .++.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHHHHHHhcCCC
Confidence            445566666666666666666666666666666666666666666555544222111110 000001  12222222221


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc--ccHHHHHHHHHHHHHhhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE--KNIRALYGLALSCHQVLTS  155 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~  155 (201)
                      . ..+++.+..+|+|...-+.++..+...|   +.++|.+.+-..++.+-  ++..+...+..++...|..
T Consensus       222 ~-~~l~~~~aadPdd~~aa~~lA~~~~~~g---~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~  288 (304)
T COG3118         222 I-QDLQRRLAADPDDVEAALALADQLHLVG---RNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA  288 (304)
T ss_pred             H-HHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence            1 2233444456666666666666666666   66666666666665543  2344445555555555533

>KOG1941|consensus

Probab=98.27  E-value=2.8e-05  Score=59.13  Aligned_cols=152  Identities=13%  Similarity=0.055  Sum_probs=115.2

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNT-----AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCD   76 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~   76 (201)
                      ..+.+..++.+++.+-+..+......+     .+...++..+..++.++++++.|+.+++...++      ..++..+|.
T Consensus        91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs  170 (518)
T KOG1941|consen   91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS  170 (518)
T ss_pred             HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence            445556677777777777666543333     566778889999999999999999999864433      346778999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCC----CCH------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC------cccHH
Q psy12642         77 LYLSEGDYAKAVFCMEELFLHHP----HNH------LLHQRYADILYTQGGLENIELAISHYLMAINLN------EKNIR  140 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~~~~----~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~  140 (201)
                      +|....++++|+-+..++..+-.    +++      ...+.++..+...|   ..-+|.++.+++.++.      |-..+
T Consensus       171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G---~LgdA~e~C~Ea~klal~~Gdra~~ar  247 (518)
T KOG1941|consen  171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLG---RLGDAMECCEEAMKLALQHGDRALQAR  247 (518)
T ss_pred             HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHhCChHHHHH
Confidence            99999999999999988886532    232      25677888999999   9999999998887654      34566


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhh
Q psy12642        141 ALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ...-++.+|...|+.+.|-..+
T Consensus       248 c~~~~aDIyR~~gd~e~af~rY  269 (518)
T KOG1941|consen  248 CLLCFADIYRSRGDLERAFRRY  269 (518)
T ss_pred             HHHHHHHHHHhcccHhHHHHHH
Confidence            7788999999999988875433

>KOG3081|consensus

Probab=98.27  E-value=0.00011  Score=53.70  Aligned_cols=127  Identities=15%  Similarity=0.087  Sum_probs=101.4

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      +.+..+++-|...++++.+.+.+.  .+..++..+..    .++..+|.-+|++.-...|..+......+.+++.+|+|+
T Consensus       147 ~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081|consen  147 LLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence            456678888999999988776543  44445554443    356889999999999888888999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      +|...++.++..+++++..+.++..+-...|+  +.+---+...+.....|+.+.
T Consensus       225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk--d~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  225 EAESLLEEALDKDAKDPETLANLIVLALHLGK--DAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhcCCcchH
Confidence            99999999999999999999999998888883  334445666667777787654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.27  E-value=9.8e-07  Score=43.94  Aligned_cols=31  Identities=23%  Similarity=0.292  Sum_probs=15.9

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642         91 MEELFLHHPHNHLLHQRYADILYTQGGLENIELA  124 (201)
Q Consensus        91 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A  124 (201)
                      |+++|+++|+++.+++.+|.++...|   ++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g---~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQG---DYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCc---CHHhh
Confidence            34455555555555555555555555   55444

>KOG1586|consensus

Probab=98.25  E-value=0.00069  Score=48.73  Aligned_cols=130  Identities=15%  Similarity=0.103  Sum_probs=90.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCC------HHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTA------ARKRKICILKAK-NKIPEAIKELTEYLKKFMTD------QETWQ   72 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~   72 (201)
                      -+-.+++..+..+|+.++++++++..+-..      .+..+|.+|-.. .++++|+.+|+++-+.....      ..++.
T Consensus        79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l  158 (288)
T KOG1586|consen   79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL  158 (288)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence            344467777888888888888877644332      234677777655 78888888888887755433      22444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH-------HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHL-------LHQRYADILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      ..+..-...++|.+|+..|++.....-+|+.       .++.-|.|+....   +.-.+...+++..+++|..
T Consensus       159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~---D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA---DEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc---cHHHHHHHHHHHHhcCCcc
Confidence            4556666778888999988888876665543       3456677777777   7777777778888888864

>KOG0545|consensus

Probab=98.17  E-value=2.8e-05  Score=56.11  Aligned_cols=96  Identities=15%  Similarity=0.081  Sum_probs=84.3

Q ss_pred             HhhhhccCHHHHHHHHHHHHhc--------CcccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKI--------DETNT----------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE   69 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~--------~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~   69 (201)
                      ..+++.|+|.+|...|..++..        .|.++          ..+....+|+...|++-+++++....+...|++..
T Consensus       186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK  265 (329)
T KOG0545|consen  186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK  265 (329)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence            4588999999999999888753        35444          55677888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL  103 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  103 (201)
                      +++..|.++...=+..+|...|.+++.++|.-..
T Consensus       266 A~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  266 AYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            9999999999999999999999999999997544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.16  E-value=4.3e-06  Score=41.56  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642        102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus       102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      +.+|+.+|.++...+   ++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLG---DYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCcCC
Confidence            357999999999999   9999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1941|consensus

Probab=98.15  E-value=0.00033  Score=53.48  Aligned_cols=150  Identities=16%  Similarity=0.126  Sum_probs=114.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcc--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCH------
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDET--N----TAARKRKICILKAKNKIPEAIKELTEYLKKFM----TDQ------   68 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~------   68 (201)
                      ....++...+.|+++++.|++++....+  +    ..+...+|.+|....++++|..+..++..+..    ++.      
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            3455677788999999999999986432  2    26778899999999999999999988877532    222      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-----
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLHH------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-----  137 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----  137 (201)
                      .+.+.++..+..+|+...|.++.+++.++.      +-.......+|.+|...|   +.+.|..-|+++......     
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g---d~e~af~rYe~Am~~m~~~gdrm  283 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG---DLERAFRRYEQAMGTMASLGDRM  283 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc---cHhHHHHHHHHHHHHHhhhhhhH
Confidence            345668888999999999999999987653      233456788999999999   999999999998865432     


Q ss_pred             -cHHHHHHHHHHHHHhhhhhh
Q psy12642        138 -NIRALYGLALSCHQVLTSAK  157 (201)
Q Consensus       138 -~~~~~~~l~~~~~~~~~~~~  157 (201)
                       ...++.+.+.|.....-..+
T Consensus       284 gqv~al~g~Akc~~~~r~~~k  304 (518)
T KOG1941|consen  284 GQVEALDGAAKCLETLRLQNK  304 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence             35567777777765554444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.13  E-value=1.2e-05  Score=39.83  Aligned_cols=34  Identities=15%  Similarity=-0.080  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD   67 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~   67 (201)
                      +.+++.+|.++...|++++|++.++++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3578899999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=0.00056  Score=50.83  Aligned_cols=170  Identities=15%  Similarity=0.098  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642         19 ALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHH   98 (201)
Q Consensus        19 A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   98 (201)
                      -.+++++.+..   ....-+..+.-....|++.+|...+..++...|++..+...++.+|...|+.+.|...+...=...
T Consensus       122 lr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~  198 (304)
T COG3118         122 LRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA  198 (304)
T ss_pred             HHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence            34455554433   334445566677889999999999999999999999999999999999999999988877533222


Q ss_pred             CCCHHHHHHHH--HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh----HHHHHHHhHH
Q psy12642         99 PHNHLLHQRYA--DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK----KKEISKQMMW  172 (201)
Q Consensus        99 ~~~~~~~~~la--~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~  172 (201)
                      ..+ ......+  ..+....   ...+ ...+++.+..+|++..+-+.++..+...|+.+.|....    ++........
T Consensus       199 ~~~-~~~~l~a~i~ll~qaa---~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~  273 (304)
T COG3118         199 QDK-AAHGLQAQIELLEQAA---ATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE  273 (304)
T ss_pred             hhh-HHHHHHHHHHHHHHHh---cCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH
Confidence            221 1111112  2223333   2222 24556677889999999999999999999999996643    2333334455


Q ss_pred             HHHHHHHHHHhhhcchHHHHHHHh
Q psy12642        173 VSKHLARQYEEQQGNTETLTELMS  196 (201)
Q Consensus       173 ~~~~l~~~y~~~~~~~~~~~~~~~  196 (201)
                      +...+...+....+.+..+..+..
T Consensus       274 ~Rk~lle~f~~~g~~Dp~~~~~RR  297 (304)
T COG3118         274 ARKTLLELFEAFGPADPLVLAYRR  297 (304)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHH
Confidence            667777777777777775555443

>KOG0551|consensus

Probab=98.09  E-value=0.00031  Score=52.88  Aligned_cols=94  Identities=17%  Similarity=0.089  Sum_probs=82.3

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETN----TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      +..|++.++|..|+..|.+.+...-.+    ...|..++.+....|+|..|+....+++..+|.+..++..-+.|++..+
T Consensus        88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe  167 (390)
T KOG0551|consen   88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE  167 (390)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence            345888999999999999999976433    4667889999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCC
Q psy12642         83 DYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~  100 (201)
                      .+.+|+.+.+..+.++..
T Consensus       168 ~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  168 RFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHhhhhhhhHH
Confidence            999999999988555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.09  E-value=0.00026  Score=47.80  Aligned_cols=60  Identities=20%  Similarity=0.239  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      +...++..+...|++++|+..+++++..+|.+...+..+..++...|   +...|++.|++..
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g---~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQG---RRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHH
Confidence            44556667777778888888888888888887777777777777777   7777777777654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.09  E-value=0.00018  Score=48.63  Aligned_cols=87  Identities=23%  Similarity=0.153  Sum_probs=69.2

Q ss_pred             hhhccCHHHHHHHHHHHHhcCccc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETN----------------------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD   67 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~   67 (201)
                      ....++.+.++..+.+++......                      ..+...++..+...|++++|+..+.+++..+|.+
T Consensus        16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~   95 (146)
T PF03704_consen   16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD   95 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Confidence            345678999999999999865111                      1445566777888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      -.+|..+-.+|...|+...|+..|++...
T Consensus        96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   96 EEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999988753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1308|consensus

Probab=98.08  E-value=4.4e-06  Score=62.69  Aligned_cols=109  Identities=12%  Similarity=-0.058  Sum_probs=73.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642         43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE  122 (201)
Q Consensus        43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~  122 (201)
                      -.+..|.++.|++.+..++.++|.....+...+.++++.++...|+..+..++.++|+....+-..|.+...+|   +++
T Consensus       123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg---~~e  199 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG---NWE  199 (377)
T ss_pred             HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh---chH
Confidence            34456777777777777777777777777777777777777777777777777777777777777777777777   777


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh
Q psy12642        123 LAISHYLMAINLNEKNIRALYGLALSCHQVLTS  155 (201)
Q Consensus       123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  155 (201)
                      +|...+..+.+++=+ ..+-..+..+.-+.+..
T Consensus       200 ~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki  231 (377)
T KOG1308|consen  200 EAAHDLALACKLDYD-EANSATLKEVFPNAGKI  231 (377)
T ss_pred             HHHHHHHHHHhcccc-HHHHHHHHHhccchhhh
Confidence            777777777776533 22223344444443333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.06  E-value=0.00047  Score=48.14  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY  113 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  113 (201)
                      ...++..+...|++++|+..++.++....+.   .-+-..++.+...+|.+++|+..+..... ..-.+......|.++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHH
Confidence            3456777888899999999999888643332   33556688899999999999988765321 1122345677899999


Q ss_pred             HcCCcccHHHHHHHHHHHHcCCccc
Q psy12642        114 TQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus       114 ~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      ..|   +.++|+..|+++++.+++.
T Consensus       171 ~kg---~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         171 AKG---DKQEARAAYEKALESDASP  192 (207)
T ss_pred             HcC---chHHHHHHHHHHHHccCCh
Confidence            999   9999999999999987553

>KOG2610|consensus

Probab=98.04  E-value=0.00048  Score=52.17  Aligned_cols=118  Identities=19%  Similarity=0.077  Sum_probs=102.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCC---HHHHHHHHHHHHHc
Q psy12642         40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHN---HLLHQRYADILYTQ  115 (201)
Q Consensus        40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~  115 (201)
                      .+.+.+..|++.+|...+.+.++..|.+.-++..--.+++.+|+.......+++.+-. +|+-   ..+.-.++..+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3456677899999999999999999999988888888999999999999999999977 6655   34455667777888


Q ss_pred             CCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        116 GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       116 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      |   -|++|.+.-.++++++|.+.-+...++.+....|+..++..
T Consensus       189 g---~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e  230 (491)
T KOG2610|consen  189 G---IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE  230 (491)
T ss_pred             c---cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence            9   99999999999999999999999999999999999888854

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.99  E-value=0.0027  Score=49.37  Aligned_cols=125  Identities=11%  Similarity=-0.045  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HhhcCCCCHHHH
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKK----FMTDQETWQELCDLYLS---EGDYAKAVFCMEE-LFLHHPHNHLLH  105 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-al~~~~~~~~~~  105 (201)
                      +.+...+-..|....+|+.-+...+..-..    .++.+.+.+..|.++-+   .|+.++|+..+.. +....+.++..+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            355556666788888888888888776655    45567777888888888   8999999999988 445566788888


Q ss_pred             HHHHHHHHHcC------CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642        106 QRYADILYTQG------GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus       106 ~~la~~~~~~~------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      ..+|.+|...-      +....++|+.+|.++++.+|+... -.|++.+....|......
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETS  279 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccch
Confidence            88888876441      233578999999999999976433 356666666666554443

>KOG2396|consensus

Probab=97.99  E-value=0.00088  Score=53.13  Aligned_cols=92  Identities=16%  Similarity=0.193  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         51 PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM  130 (201)
Q Consensus        51 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  130 (201)
                      ..-...|+.+...++.|+..|........+.+.+.+--..|.+++..+|+++..|..-|...+..+.  +.+.|...|.+
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~--ni~saRalflr  165 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL--NIESARALFLR  165 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc--chHHHHHHHHH
Confidence            3445678889999999999999998888888889999999999999999999999999999988872  49999999999


Q ss_pred             HHcCCcccHHHHHH
Q psy12642        131 AINLNEKNIRALYG  144 (201)
Q Consensus       131 al~~~p~~~~~~~~  144 (201)
                      +++.+|+++..|..
T Consensus       166 gLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  166 GLRFNPDSPKLWKE  179 (568)
T ss_pred             HhhcCCCChHHHHH
Confidence            99999999987654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.99  E-value=0.0011  Score=52.59  Aligned_cols=132  Identities=14%  Similarity=0.037  Sum_probs=88.6

Q ss_pred             hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------------------C---
Q psy12642         12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT---------------------D---   67 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------------~---   67 (201)
                      +..+...-++.-+++++.+|+.+.++..++.-.  .....++.+.++++++....                     +   
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~  257 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV  257 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence            456788888888899999999888888776521  23345566666655542110                     0   


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC-CcccHHHHH
Q psy12642         68 -QETWQELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINL-NEKNIRALY  143 (201)
Q Consensus        68 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~  143 (201)
                       ..+...+|.+..+.|+.++|++.++..++..|.  +..++.++..++...+   .|.++...+.+.=+. -|+.....|
T Consensus       258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq---~Yad~q~lL~kYdDi~lpkSAti~Y  334 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQ---AYADVQALLAKYDDISLPKSATICY  334 (539)
T ss_pred             hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcC---CHHHHHHHHHHhccccCCchHHHHH
Confidence             123455788888888888888888888877764  4557888888888888   888888888775332 244444444


Q ss_pred             HHHHH
Q psy12642        144 GLALS  148 (201)
Q Consensus       144 ~l~~~  148 (201)
                      .-+..
T Consensus       335 TaALL  339 (539)
T PF04184_consen  335 TAALL  339 (539)
T ss_pred             HHHHH
Confidence            44443

The molecular function of this protein is uncertain.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.97  E-value=1.7e-05  Score=39.28  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHP   99 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   99 (201)
                      +|+.+|.+|...|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455555555555555555555555555555

...

>KOG1585|consensus

Probab=97.96  E-value=0.0031  Score=45.81  Aligned_cols=181  Identities=12%  Similarity=0.038  Sum_probs=118.4

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNT------AARKRKICILKAKNKIPEAIKELTEYLKKF-----MTDQETWQEL   74 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~l   74 (201)
                      .+.++...++|++|...+.++.+-..++.      .++-..+.+......+.++..+++++....     |+....-...
T Consensus        37 AAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleK  116 (308)
T KOG1585|consen   37 AAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEK  116 (308)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence            35678888999999999999986544332      344455666777888899999999988753     3333333333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc------CCcccHHHH
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHYLMAIN------LNEKNIRAL  142 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~  142 (201)
                      +--.....++++|+..|++++.+-..+      ...+-..+.++....   .+++|-..+.+-..      ..|..-..+
T Consensus       117 Aak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~---kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~  193 (308)
T KOG1585|consen  117 AAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE---KFTEAATAFLKEGVAADKCDAYNSQCKAY  193 (308)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH---HhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence            444456778999999999988654322      234555677777777   88888777766432      234444566


Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHH------HHHhHHHHHHHHHHHHhhhcchH
Q psy12642        143 YGLALSCHQVLTSAKCSAAKKKEI------SKQMMWVSKHLARQYEEQQGNTE  189 (201)
Q Consensus       143 ~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~l~~~y~~~~~~~~  189 (201)
                      .....+|....++..|........      ..-...+...|...|.++++..-
T Consensus       194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~  246 (308)
T KOG1585|consen  194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI  246 (308)
T ss_pred             HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence            777777777778888765444321      12233456678888887665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.92  E-value=0.00057  Score=54.22  Aligned_cols=124  Identities=13%  Similarity=0.021  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-----------------
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP-----------------   99 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----------------   99 (201)
                      -..+..-..+..+.+.-++...++++++|+.+++|..++.=  ......+|...|+++++...                 
T Consensus       171 Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e  248 (539)
T PF04184_consen  171 AQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE  248 (539)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence            33556667788899999999999999999999999887642  22335666666666654211                 


Q ss_pred             ----CC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc--cHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        100 ----HN----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       100 ----~~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                          .+    ..+...+|.+..+.|   +.++|++.++..++..|.  +...+.+|..++..++.+.++..-..+.
T Consensus       249 ~~~~Rdt~~~~y~KrRLAmCarklG---r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  249 AWHRRDTNVLVYAKRRLAMCARKLG---RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhhccccchhhhhHHHHHHHHHHhC---ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                00    224578999999999   999999999999988875  5678999999999999999997765554

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.91  E-value=0.002  Score=50.06  Aligned_cols=158  Identities=14%  Similarity=0.049  Sum_probs=107.4

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhcCCCHHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKI----DETNTAARKRKICILKA---KNKIPEAIKELTE-YLKKFMTDQETWQELCDL   77 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-~~~~~p~~~~~~~~l~~~   77 (201)
                      +.+.|.+..+|+.-+.+.+.+-..    -++.+.+.+.+|.++.+   .|+.++|+..+.. .....+.+++.+..+|.+
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            556788999999999998887766    45677888899999999   8999999999998 555677889999999988


Q ss_pred             HHh---------cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcc-cHHHHHHHH---HHHH-cC----CcccH
Q psy12642         78 YLS---------EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE-NIELAISHY---LMAI-NL----NEKNI  139 (201)
Q Consensus        78 ~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~-~~~~A~~~~---~~al-~~----~p~~~  139 (201)
                      |..         ....++|+.+|.++...+|+... =.+++.++...|... .-.+..+.-   ...+ +.    .-.+.
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY  305 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY  305 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence            753         23478999999999999976433 344555555555211 111111111   1111 11    11233


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642        140 RALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus       140 ~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      .....+..+..-.|+.+++....++
T Consensus       306 Wd~ATl~Ea~vL~~d~~ka~~a~e~  330 (374)
T PF13281_consen  306 WDVATLLEASVLAGDYEKAIQAAEK  330 (374)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3445667777778888888664443

>KOG1308|consensus

Probab=97.90  E-value=1.3e-05  Score=60.18  Aligned_cols=94  Identities=9%  Similarity=0.027  Sum_probs=82.1

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      ++..+..|.+++|++.+..++.++|.....+..++.++..+++...|++.+..++.++|+...-+-..|.....+|+|++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            45566788999999999999999999999999999999999999999999999999999988888888888999999999


Q ss_pred             HHHHHHHHhhcCCC
Q psy12642         87 AVFCMEELFLHHPH  100 (201)
Q Consensus        87 A~~~~~~al~~~~~  100 (201)
                      |...+..+.+++-+
T Consensus       201 aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  201 AAHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHHhcccc
Confidence            99998888776543

>KOG1586|consensus

Probab=97.89  E-value=0.0038  Score=45.05  Aligned_cols=90  Identities=18%  Similarity=0.121  Sum_probs=57.6

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHH
Q psy12642         47 KNKIPEAIKELTEYLKKFMTDQET------WQELCDLYLSE-GDYAKAVFCMEELFLHHPHN------HLLHQRYADILY  113 (201)
Q Consensus        47 ~~~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~  113 (201)
                      ..++.+|+.++++++++..+...+      +..+|.+|... .++++|+.+|+++-......      ...+...+....
T Consensus        86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa  165 (288)
T KOG1586|consen   86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA  165 (288)
T ss_pred             ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence            347777777777777766544332      33567777654 77888888888776544322      224455555556


Q ss_pred             HcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642        114 TQGGLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus       114 ~~~~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                      ..+   +|.+|++.|+++....-+++
T Consensus       166 ~le---qY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  166 QLE---QYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHH---HHHHHHHHHHHHHHHhccch
Confidence            667   88888888888776555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.80  E-value=0.00041  Score=48.45  Aligned_cols=97  Identities=14%  Similarity=0.067  Sum_probs=75.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE   81 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~   81 (201)
                      -.+..+...+++++|+..++.++....+.   .-+-.+++.+...+|.+++|+..+....... -.+......|.++...
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~k  172 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHc
Confidence            34566788999999999999998644332   3566789999999999999999887644311 1233455679999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCCH
Q psy12642         82 GDYAKAVFCMEELFLHHPHNH  102 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~~~~~  102 (201)
                      |+-++|...|++++...++++
T Consensus       173 g~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         173 GDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             CchHHHHHHHHHHHHccCChH
Confidence            999999999999999885543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.76  E-value=0.00076  Score=42.75  Aligned_cols=47  Identities=13%  Similarity=0.079  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      .|+++|.++..+.|..+..++.+|.-+....   .|++++.-.++++...
T Consensus        62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~---~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   62 GSVECFSRAVELSPDSAHSLFELASQLGSVK---YYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HhHHHHHHHhccChhHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhccc
Confidence            4677888888888888888888887666556   7888888777777643

>PRK10941 hypothetical protein; Provisional

Probab=97.75  E-value=0.00076  Score=50.25  Aligned_cols=63  Identities=11%  Similarity=0.044  Sum_probs=33.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHH
Q psy12642         42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL  104 (201)
Q Consensus        42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  104 (201)
                      .++...++++.|+.+.+..+...|+++.-+.-.|.+|.+.|.+..|...++..+...|+++.+
T Consensus       189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            344455555555555555555555555555555555555555555555555555555555444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.70  E-value=0.0043  Score=47.72  Aligned_cols=140  Identities=14%  Similarity=0.044  Sum_probs=103.2

Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642         21 EHLETIIKIDETNTAARKRKICILKAKNK------------IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      ..+++.+..+|.+..+|..+...--..-.            .+.-+.+++++++.+|++...+..+-.+..+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788889999999999998875444322            356678899999999999999988888888888999999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------------------cHHHHHHHHHHHH
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------------------NIRALYGLALSCH  150 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~l~~~~~  150 (201)
                      .-+++++..+|+++..|..+-......-..-.++.....|.++++.-..                  -...+..+.....
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~  165 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR  165 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999998877765544422112567777777776643211                  1234455666667


Q ss_pred             Hhhhhhhhhh
Q psy12642        151 QVLTSAKCSA  160 (201)
Q Consensus       151 ~~~~~~~a~~  160 (201)
                      +.|-.+.|..
T Consensus       166 ~aG~~E~Ava  175 (321)
T PF08424_consen  166 QAGYTERAVA  175 (321)
T ss_pred             HCCchHHHHH
Confidence            7777777755

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.68  E-value=0.0043  Score=48.06  Aligned_cols=120  Identities=14%  Similarity=0.086  Sum_probs=62.8

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CC-------
Q psy12642         32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFM----TDQETWQELCDLYLSEGDYAKAVFCMEELFLH-HP-------   99 (201)
Q Consensus        32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~-------   99 (201)
                      .....+...+.+....|+++.|...+.++....+    ..+.+....+.+....|+..+|+..++..+.. ..       
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            3344455555555555555555555555444321    12344444555555555555555555544440 00       


Q ss_pred             --------------------------CCHHHHHHHHHHHHHc------CCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642        100 --------------------------HNHLLHQRYADILYTQ------GGLENIELAISHYLMAINLNEKNIRALYGLAL  147 (201)
Q Consensus       100 --------------------------~~~~~~~~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  147 (201)
                                                ....++..+|......      +   ..++++..|..+++.+|+...+|+.++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSE---SSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccc---cHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                                      0012455555555555      4   6666666677666666666666666666


Q ss_pred             HHHHhhh
Q psy12642        148 SCHQVLT  154 (201)
Q Consensus       148 ~~~~~~~  154 (201)
                      .+...-+
T Consensus       301 ~~~~~~~  307 (352)
T PF02259_consen  301 FNDKLLE  307 (352)
T ss_pred             HHHHHHH
Confidence            6665543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.68  E-value=9.4e-05  Score=36.16  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=13.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  100 (201)
                      ++.+|.++...|++++|+..|++++...|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            334444444444444444444444444443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.67  E-value=0.00017  Score=35.58  Aligned_cols=32  Identities=16%  Similarity=-0.020  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMT   66 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~   66 (201)
                      .+++.+|.++...|++++|+..|+++++.+|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46888999999999999999999999999885

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.66  E-value=0.016  Score=44.86  Aligned_cols=63  Identities=27%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHP----HNHLLHQRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      ...|..++.+..+.|.++-|...+.++....+    ..+.+.+..+..+...|   +..+|+..++..+.
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g---~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQG---EQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence            44555555555555555555555555554331    12344445555555555   55555555544444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4507|consensus

Probab=97.66  E-value=0.00021  Score=57.67  Aligned_cols=104  Identities=18%  Similarity=0.093  Sum_probs=87.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642         44 LKAKNKIPEAIKELTEYLKKFMTDQ-ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE  122 (201)
Q Consensus        44 ~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~  122 (201)
                      +...|+...|++++..++...|... .....++++....|-...|-..+.+++.+....|..++.+|..+....   +.+
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~---~i~  693 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK---NIS  693 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh---hhH
Confidence            3456999999999999998888653 346678899999898899999999999998888889999999999999   999


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642        123 LAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus       123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                      .|++.|+++++++|+++.....|-.+-.
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999998876655544433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.63  E-value=0.00093  Score=42.36  Aligned_cols=92  Identities=16%  Similarity=0.048  Sum_probs=74.2

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhcCCCHHHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNK-----------IPEAIKELTEYLKKFMTDQETWQ   72 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~~~~   72 (201)
                      +..++..|++-+|+++.+..+..++++.   ..+...|.++..+..           ...+++.+.++..+.|..+..++
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            4568899999999999999999887766   566677888765432           35678888999999999988888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHH   98 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~   98 (201)
                      .+|.-+-....|++++.-.++++...
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            88887766777888888888888654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.63  E-value=0.0083  Score=40.86  Aligned_cols=102  Identities=15%  Similarity=-0.046  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      ..+.....+-...++.+++...+.....+.|..+.+-..-|.++...|+|.+|+..|+.+....|..+..--.++.|++.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            45556667777888999999999998889999999999999999999999999999999998899999999999999998


Q ss_pred             cCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642        115 QGGLENIELAISHYLMAINLNEKNIRA  141 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~al~~~p~~~~~  141 (201)
                      .+   +.+- ..+-..+++..++ +.+
T Consensus        91 ~~---D~~W-r~~A~evle~~~d-~~a  112 (160)
T PF09613_consen   91 LG---DPSW-RRYADEVLESGAD-PDA  112 (160)
T ss_pred             cC---ChHH-HHHHHHHHhcCCC-hHH
Confidence            88   5322 2233445555543 444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.62  E-value=0.00046  Score=37.86  Aligned_cols=39  Identities=21%  Similarity=0.111  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY  108 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  108 (201)
                      ..+.++..+++.|+|++|..+.+.+++++|+|..+....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            344555556666666666666666666666655554433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.62  E-value=0.00013  Score=36.64  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=14.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELF   95 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al   95 (201)
                      +..+|.+|..+|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666643

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.60  E-value=0.00018  Score=35.14  Aligned_cols=32  Identities=19%  Similarity=0.151  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642         36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTD   67 (201)
Q Consensus        36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~   67 (201)
                      +++.+|.++...|++++|+..++++++.+|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67788999999999999999999999999874

>KOG0530|consensus

Probab=97.60  E-value=0.0033  Score=46.09  Aligned_cols=141  Identities=14%  Similarity=0.063  Sum_probs=109.1

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH-HHH
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA-KAV   88 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~A~   88 (201)
                      .+...-.+|+.....++..+|.+..+|..+-.++..++ +..+-++++.+.+..+|.+..+|...-.+....|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            44567788999999999999999888888888777664 5677788999999999999999998888878888887 778


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHcCC-------------------------------------cccHHHHHHHHHHH
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILYTQGG-------------------------------------LENIELAISHYLMA  131 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~-------------------------------------~~~~~~A~~~~~~a  131 (201)
                      +..+.++..+..|.-+|...--+...-+.                                     ....+.-+.+..+.
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~  213 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK  213 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence            88888888888777666554444333330                                     01355667777888


Q ss_pred             HcCCcccHHHHHHHHHHHHH
Q psy12642        132 INLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus       132 l~~~p~~~~~~~~l~~~~~~  151 (201)
                      |...|++..+|..|.-++..
T Consensus       214 I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  214 ILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHhCCCCccHHHHHHHHHHh
Confidence            88888999999998888875

>KOG2396|consensus

Probab=97.59  E-value=0.0021  Score=51.04  Aligned_cols=92  Identities=13%  Similarity=0.064  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Q psy12642         17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD-YAKAVFCMEELF   95 (201)
Q Consensus        17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al   95 (201)
                      .+-...|+.++...+.++..|..........+.+.+--.+|.+++..+|++++.|..-+.-.+.-+. .+.|...|.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3456678888888888898888887777777778888999999999999999999988877776665 899999999999


Q ss_pred             hcCCCCHHHHHHH
Q psy12642         96 LHHPHNHLLHQRY  108 (201)
Q Consensus        96 ~~~~~~~~~~~~l  108 (201)
                      ..+|+++..|..+
T Consensus       168 R~npdsp~Lw~ey  180 (568)
T KOG2396|consen  168 RFNPDSPKLWKEY  180 (568)
T ss_pred             hcCCCChHHHHHH
Confidence            9999998876543

>KOG2047|consensus

Probab=97.58  E-value=0.025  Score=46.64  Aligned_cols=129  Identities=14%  Similarity=0.073  Sum_probs=88.5

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------------
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDET----NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------------   67 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------   67 (201)
                      +.++.-|...|+.+.|...|+++.+..-.    -..+|..-|..-+...+++.|+++++.+... |..            
T Consensus       391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pv  469 (835)
T KOG2047|consen  391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPV  469 (835)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcH
Confidence            44556677788888888888888775522    2466666677777777788888877776542 221            


Q ss_pred             -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642         68 -------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus        68 -------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                             ..+|..++......|-++.....|++.+.+.--.|....++|..+....   -++++.+.|++.+.+.|
T Consensus       470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~---yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK---YFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH---HHHHHHHHHHcCCccCC
Confidence                   3356666777677777777777777777776666777777777776666   67777777777776654

>PRK10941 hypothetical protein; Provisional

Probab=97.58  E-value=0.0017  Score=48.43  Aligned_cols=74  Identities=14%  Similarity=0.023  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  146 (201)
                      ....+-.+|...++++.|+.+.+..+.+.|+++.-+...|.++...+   .+..|+.-++..++..|+++.+-.-..
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~---c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLD---CEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            34456678899999999999999999999999999999999999999   999999999999999999887654433

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.57  E-value=0.019  Score=43.38  Aligned_cols=137  Identities=15%  Similarity=-0.038  Sum_probs=99.3

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTD-QETWQELCDLYLSEG--   82 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~--   82 (201)
                      .....+..+|..+|..+.  ...++.+.+.+|.++..    ..+..+|..+++++....-.. ......+|.+|..-+  
T Consensus        87 ~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~  164 (292)
T COG0790          87 KGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQA  164 (292)
T ss_pred             cCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhh
Confidence            344567888999998554  45567777888888887    448899999999988864333 234777787776542  


Q ss_pred             -----CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         83 -----DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        83 -----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                           +...|...|.++-...  ++.+.+.+|.+|..- |-..++.+|..+|.++.+...  ..+.+.++ ++...|
T Consensus       165 ~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         165 LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence                 2337888888877655  777888888777554 234589999999999998876  77788888 555555

>KOG3824|consensus

Probab=97.54  E-value=0.00054  Score=51.28  Aligned_cols=70  Identities=20%  Similarity=0.179  Sum_probs=56.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         76 DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS  148 (201)
Q Consensus        76 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  148 (201)
                      .-..+.|+.++|...|+.++.+.|+++.++..+|.+....+   +.-+|-.+|-+++.++|.+.+++.+....
T Consensus       124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~---~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHN---EIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh---hhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            33456788888888888888888888888888888877777   88888888888888888888887766543

>KOG1550|consensus

Probab=97.51  E-value=0.0082  Score=49.70  Aligned_cols=143  Identities=19%  Similarity=-0.007  Sum_probs=105.7

Q ss_pred             hhhccCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKI-----DETNTAARKRKICILKAKN-----KIPEAIKELTEYLKKFMTDQETWQELCDLYL   79 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~   79 (201)
                      .-...|.+.|+.+|+.+...     .-.++.+...+|.+|....     +.+.|..++.++-...  ++.+.+.+|.++.
T Consensus       259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~  336 (552)
T KOG1550|consen  259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYE  336 (552)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence            44678999999999999771     1115567778999998853     6788999999888754  5678888999988


Q ss_pred             hcC---CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh-hh
Q psy12642         80 SEG---DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG-GLENIELAISHYLMAINLNEKNIRALYGLALSCHQV-LT  154 (201)
Q Consensus        80 ~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~  154 (201)
                      ...   ++..|..+|..+..  ..+..+.+.++.++..-. -..+...|..+|.++.+.+  ++.+.+.++.++..- +.
T Consensus       337 ~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~  412 (552)
T KOG1550|consen  337 TGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGR  412 (552)
T ss_pred             cCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccc
Confidence            655   67899999998874  456778888888876542 2337899999999999987  455556666555543 44


Q ss_pred             hhhh
Q psy12642        155 SAKC  158 (201)
Q Consensus       155 ~~~a  158 (201)
                      ...+
T Consensus       413 ~~~~  416 (552)
T KOG1550|consen  413 YDTA  416 (552)
T ss_pred             ccHH
Confidence            4333

>KOG2047|consensus

Probab=97.51  E-value=0.039  Score=45.60  Aligned_cols=135  Identities=7%  Similarity=-0.018  Sum_probs=99.1

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcc------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDET------------------NTAARKRKICILKAKNKIPEAIKELTEYLKKF   64 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   64 (201)
                      +..++..=.+..+++.|+.+.+.+...-..                  +..+|..++...-..|-++.....|++.+++-
T Consensus       428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr  507 (835)
T KOG2047|consen  428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR  507 (835)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence            444555556778899999999888753211                  22566677777777899999999999999988


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642         65 MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus        65 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      --.|....+.|.++....-+++|.+.|++.+.+.+  .-...|..+-.-..+.-+....+.|...|+++++..|.
T Consensus       508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP  582 (835)
T ss_pred             cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence            88888888889888888889999999999998865  33344443322222211112789999999999999884

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.47  E-value=0.0034  Score=38.66  Aligned_cols=44  Identities=27%  Similarity=0.296  Sum_probs=19.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642         56 ELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP   99 (201)
Q Consensus        56 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   99 (201)
                      .+++.+..+|+|..+.+.++..+...|++++|+..+-.++..++
T Consensus        10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr   53 (90)
T PF14561_consen   10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR   53 (90)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            34444444444444444444444444444444444444444443

>KOG3824|consensus

Probab=97.44  E-value=0.00091  Score=50.12  Aligned_cols=72  Identities=14%  Similarity=0.080  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642         40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI  111 (201)
Q Consensus        40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  111 (201)
                      .+.-....|+.++|...|+.++.+.|++++++..+|.+....++.-+|-.+|-+++..+|.|..++.+.+..
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            344456789999999999999999999999999999999888999999999999999999999888776654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.44  E-value=0.036  Score=43.36  Aligned_cols=128  Identities=10%  Similarity=0.064  Sum_probs=94.4

Q ss_pred             HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------c------------------CCCHH---HHHHHH
Q psy12642         25 TIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------F------------------MTDQE---TWQELC   75 (201)
Q Consensus        25 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~------------------p~~~~---~~~~l~   75 (201)
                      ..+..+|.+..++..++.++..+|+...|.+.+++++-.        +                  +.|..   +.+...
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            445678999999999999999999999999999987531        1                  11212   334455


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHH-HHcCCcccHHHHHHHHHHHHcCCc-c----cHHHHHHHHHH
Q psy12642         76 DLYLSEGDYAKAVFCMEELFLHHPH-NHLLHQRYADIL-YTQGGLENIELAISHYLMAINLNE-K----NIRALYGLALS  148 (201)
Q Consensus        76 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~-~~~~~~~~~~~A~~~~~~al~~~p-~----~~~~~~~l~~~  148 (201)
                      ....+.|-+..|.++.+-.+.++|. ||......-..+ .+.+   +++--++.++....... +    -|..-+.++.+
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~---~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA  187 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSR---QYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA  187 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcC---CHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence            6778899999999999999999998 887655554444 4556   78877777776554211 1    23456788899


Q ss_pred             HHHhhhh
Q psy12642        149 CHQVLTS  155 (201)
Q Consensus       149 ~~~~~~~  155 (201)
                      +...++.
T Consensus       188 ~~~l~~~  194 (360)
T PF04910_consen  188 YFRLEKE  194 (360)
T ss_pred             HHHhcCc
Confidence            9998887

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.42  E-value=0.0047  Score=38.04  Aligned_cols=67  Identities=16%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHHhhhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSCHQVLTSA  156 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~  156 (201)
                      .+..+++.+..+|+|+...+.+|..+...|   ++++|++.+..+++.+++.  ..+...+..++..+|...
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g---~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAG---DYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            466788999999999999999999999999   9999999999999999864  667777888888888644

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.40  E-value=0.039  Score=43.02  Aligned_cols=147  Identities=13%  Similarity=-0.049  Sum_probs=80.5

Q ss_pred             hhccCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         11 FHFFRYEEALEHLETIIKIDETN-TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      .-.|+++.|..-|+.++. +|.. .--+..+-.-....|+.+.|+.+.+.+-...|.-+.++...-...+..|+|+.|++
T Consensus       131 l~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk  209 (531)
T COG3898         131 LLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK  209 (531)
T ss_pred             HhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence            345778888877777763 3322 11111222222346777777777777777777777777766666677777777777


Q ss_pred             HHHHHhhc---CCCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         90 CMEELFLH---HPHNHL---LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        90 ~~~~al~~---~~~~~~---~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      ........   .++-..   +-..-+......+.  +...|...-.++.++.|+...+-..-+..+.+.|+..|+..
T Consensus       210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda--dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~  284 (531)
T COG3898         210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA--DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK  284 (531)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence            76554432   222111   11111111111111  45556666666666666665555556666666666666544

>KOG2471|consensus

Probab=97.36  E-value=0.00067  Score=53.78  Aligned_cols=106  Identities=15%  Similarity=0.058  Sum_probs=83.9

Q ss_pred             hhhccCHHHHHHHHHHHH-hcCcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------cC------
Q psy12642         10 CFHFFRYEEALEHLETII-KIDET--------NTAARKRKICILKAKNKIPEAIKELTEYLKK---------FM------   65 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l-~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------~p------   65 (201)
                      .+..|+|.+|.+.+...= ...|.        ....|..+|.+++..|.+..+..+|.++++.         .|      
T Consensus       250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl  329 (696)
T KOG2471|consen  250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL  329 (696)
T ss_pred             HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence            445689999988765431 12222        2345678999999999999999999999851         11      


Q ss_pred             ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642         66 ---TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ  115 (201)
Q Consensus        66 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  115 (201)
                         ...++.+..|..|...|+.-.|.++|.+++...-.+|..|.+++++....
T Consensus       330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence               23567889999999999999999999999999999999999999987654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.36  E-value=0.045  Score=42.70  Aligned_cols=124  Identities=15%  Similarity=-0.067  Sum_probs=71.5

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCH---HHHHHHHHHH-HhcCC
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK---FMTDQ---ETWQELCDLY-LSEGD   83 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~---~~~~~l~~~~-~~~~~   83 (201)
                      ...|+.+.|..+-+.+-..-|.-++++...-...+..|+++.|++........   .++-.   .+-..-+... .-..+
T Consensus       165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad  244 (531)
T COG3898         165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD  244 (531)
T ss_pred             HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence            35677777777777777777777777777777777778888777777654332   11111   0111111111 11234


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      ...|...-.+++++.|+-...-..-+..++..|   +..++-..++.+.+..|.
T Consensus       245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~---~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         245 PASARDDALEANKLAPDLVPAAVVAARALFRDG---NLRKGSKILETAWKAEPH  295 (531)
T ss_pred             hHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc---chhhhhhHHHHHHhcCCC
Confidence            555555666666666666555555566666666   555555555555555543

>KOG3364|consensus

Probab=97.36  E-value=0.0086  Score=39.43  Aligned_cols=73  Identities=18%  Similarity=0.159  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHH
Q psy12642         35 AARKRKICILKAKN---KIPEAIKELTEYLK-KFMTD-QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR  107 (201)
Q Consensus        35 ~~~~~~a~~~~~~~---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  107 (201)
                      ...+.++.++....   +.++.+.+++..++ ..|.. -+..+.++..+++.++|++++.+.+..+...|+|..+...
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            44555555555443   34555666666664 33332 3455556666666666666666666666666666655433

>KOG1585|consensus

Probab=97.34  E-value=0.019  Score=41.88  Aligned_cols=145  Identities=11%  Similarity=0.030  Sum_probs=96.6

Q ss_pred             hhhccCHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKID-----ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLY   78 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~   78 (201)
                      ......+.++..+++++....     |+....-...+.-..+..++++|+.+|++++.....+      .+.+...+.++
T Consensus        81 ake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l  160 (308)
T KOG1585|consen   81 AKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL  160 (308)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence            445667888888888887653     4433334444555667788999999999988765433      34566678889


Q ss_pred             HhcCCHHHHHHHHHHHhh----cCCCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC----cccHHHHHHHHHH
Q psy12642         79 LSEGDYAKAVFCMEELFL----HHPHNHL--LHQRYADILYTQGGLENIELAISHYLMAINLN----EKNIRALYGLALS  148 (201)
Q Consensus        79 ~~~~~~~~A~~~~~~al~----~~~~~~~--~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~  148 (201)
                      .+.+.+.+|-..+.+-..    .+..+..  .+.....++...+   +|..|..+++...++.    |++.++.-+|...
T Consensus       161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~---Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a  237 (308)
T KOG1585|consen  161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAH---DYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA  237 (308)
T ss_pred             hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHH---HHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence            999999999888766542    2333333  3344444555667   8999999999977654    5567777777766


Q ss_pred             HHHhhhhhhh
Q psy12642        149 CHQVLTSAKC  158 (201)
Q Consensus       149 ~~~~~~~~~a  158 (201)
                      |.. |+.+..
T Consensus       238 yd~-gD~E~~  246 (308)
T KOG1585|consen  238 YDE-GDIEEI  246 (308)
T ss_pred             hcc-CCHHHH
Confidence            643 443333

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.33  E-value=0.002  Score=35.38  Aligned_cols=46  Identities=17%  Similarity=-0.063  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642        103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus       103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      ..++.+|..+++.|   +|++|.++.+.+++..|++..+......+-.+
T Consensus         2 d~lY~lAig~ykl~---~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~   47 (53)
T PF14853_consen    2 DCLYYLAIGHYKLG---EYEKARRYCDALLEIEPDNRQAQSLKELIEDK   47 (53)
T ss_dssp             HHHHHHHHHHHHTT----HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            35788899999999   99999999999999999999886655555443

>smart00028 TPR Tetratricopeptide repeats

Probab=97.33  E-value=0.00045  Score=32.85  Aligned_cols=31  Identities=29%  Similarity=0.441  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  100 (201)
                      ++..+|.++...|++++|+.++++++..+|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3445555555555555555555555555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4507|consensus

Probab=97.33  E-value=0.013  Score=47.91  Aligned_cols=121  Identities=10%  Similarity=-0.001  Sum_probs=95.8

Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642         21 EHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ--ETWQELCDLYLSEGDYAKAVFCMEELFLHH   98 (201)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   98 (201)
                      ......++.+|.+...+..-+..+...|+..+|+.++..++-..|...  -+...+|.++.+.|.-.+|--.+-.|+...
T Consensus       200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            355666777787776665555555567999999999999998776542  356678999999999999998888888777


Q ss_pred             CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHH
Q psy12642         99 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYG  144 (201)
Q Consensus        99 ~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  144 (201)
                      |.-...++.++.++...+   ++...+..|..+.+.+|....+...
T Consensus       280 ~~~t~n~y~l~~i~aml~---~~N~S~~~ydha~k~~p~f~q~~~q  322 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLG---EYNHSVLCYDHALQARPGFEQAIKQ  322 (886)
T ss_pred             ccccccceeHHHHHHHHh---hhhhhhhhhhhhhccCcchhHHHHH
Confidence            765566889999999999   9999999999999999975544433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.30  E-value=0.00046  Score=51.67  Aligned_cols=84  Identities=21%  Similarity=0.305  Sum_probs=71.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642         58 TEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR-YADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus        58 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                      .++-...|+|+..|...+..-.+.|-|.+--..|.++++.+|.|+..|.. -+.-+...+   +++.+...|.++++.+|
T Consensus        97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a---ni~s~Ra~f~~glR~N~  173 (435)
T COG5191          97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA---NIESSRAMFLKGLRMNS  173 (435)
T ss_pred             ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc---cHHHHHHHHHhhhccCC
Confidence            33445678899999998888888889999999999999999999999877 455566778   99999999999999999


Q ss_pred             ccHHHHHH
Q psy12642        137 KNIRALYG  144 (201)
Q Consensus       137 ~~~~~~~~  144 (201)
                      ++|..|+.
T Consensus       174 ~~p~iw~e  181 (435)
T COG5191         174 RSPRIWIE  181 (435)
T ss_pred             CCchHHHH
Confidence            99987754

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.27  E-value=0.011  Score=39.61  Aligned_cols=81  Identities=15%  Similarity=-0.036  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642         36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ  115 (201)
Q Consensus        36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  115 (201)
                      .+......-...++.+++...+....-+.|+.+.+-..-|.++...|+|.+|+..|+......+..+...-.++.|++.+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            34444555556889999999998888889999988888899999999999999999999888888888888889999988


Q ss_pred             C
Q psy12642        116 G  116 (201)
Q Consensus       116 ~  116 (201)
                      +
T Consensus        92 ~   92 (153)
T TIGR02561        92 G   92 (153)
T ss_pred             C
Confidence            8

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.25  E-value=0.0031  Score=50.20  Aligned_cols=132  Identities=9%  Similarity=-0.006  Sum_probs=105.4

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A   87 (201)
                      ..-...|+.-.|-+-+..++...|.+|......+.++..+|+|+.+...+..+-..-.....+...+-......|+++.|
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            34456789999999999999999999999999999999999999999888766554444444555555667789999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642         88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus        88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                      ...-+-.+...-+++....--+......+   -++++..++++.+.++|.....|
T Consensus       377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~---~~d~~~~~wk~~~~~~~~~~~g~  428 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTVAAGSADALQ---LFDKSYHYWKRVLLLNPETQSGW  428 (831)
T ss_pred             HHHHHHHhccccCChhheeeecccHHHHh---HHHHHHHHHHHHhccCChhcccc
Confidence            99988888777777777766666667778   89999999999999998644333

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.23  E-value=0.026  Score=43.42  Aligned_cols=117  Identities=18%  Similarity=0.105  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS---EGDYAKAVFCME   92 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~   92 (201)
                      .+.-+.+|++|++.+|.+...+..+..+.....+.++....+++++..+|+++..|...-.....   .-.++.....|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999876544333   235778888887


Q ss_pred             HHhhcCC----C--------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         93 ELFLHHP----H--------------NHLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        93 ~al~~~~----~--------------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      +++..-.    .              -..++..+.......|   ..+.|+..++-.++.+
T Consensus       127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG---~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAG---YTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCC---chHHHHHHHHHHHHHH
Confidence            7774311    1              0124566677778889   9999999999999876

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.21  E-value=0.0012  Score=33.04  Aligned_cols=27  Identities=19%  Similarity=0.117  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642         36 ARKRKICILKAKNKIPEAIKELTEYLK   62 (201)
Q Consensus        36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~   62 (201)
                      ++..+|.+|...|++++|+.+|++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            467889999999999999999999554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.19  E-value=0.017  Score=39.41  Aligned_cols=83  Identities=17%  Similarity=-0.013  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC  149 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  149 (201)
                      ....+...-...++.+++...+...-.+.|..+..-..-|.++...|   ++.+|+..|+.+....|..+.+-..++.|+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~---~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRG---DWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC---CHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            34445555667889999999999999999999999999999999999   999999999999999999998888899999


Q ss_pred             HHhhhh
Q psy12642        150 HQVLTS  155 (201)
Q Consensus       150 ~~~~~~  155 (201)
                      ..+++.
T Consensus        89 ~~~~D~   94 (160)
T PF09613_consen   89 YALGDP   94 (160)
T ss_pred             HHcCCh
Confidence            888864

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.12  E-value=0.044  Score=37.96  Aligned_cols=143  Identities=17%  Similarity=0.162  Sum_probs=104.1

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH-----HHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETN--TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET-----WQELCD   76 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~   76 (201)
                      +..++.+...+..++|+.-|..+-+.....  .-+.++.+.+....|+...|+..|.++-...| .|..     ...-+.
T Consensus        62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~  140 (221)
T COG4649          62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAY  140 (221)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHH
Confidence            345667778889999999998877655322  35567778889999999999999998766443 2222     333456


Q ss_pred             HHHhcCCHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         77 LYLSEGDYAKAVFCMEELF-LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      ++...|.|+.-....+.+- ..+|.-..+...+|...++.|   ++.+|..+|.+... +...|+...+.+++...
T Consensus       141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kag---d~a~A~~~F~qia~-Da~aprnirqRAq~mld  212 (221)
T COG4649         141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAG---DFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhcc---chHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence            6778999998877766543 234455567888999999999   99999999998776 55556666666665544

>KOG0530|consensus

Probab=97.08  E-value=0.011  Score=43.50  Aligned_cols=140  Identities=15%  Similarity=0.091  Sum_probs=85.5

Q ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH-
Q psy12642         14 FRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIP-EAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCM-   91 (201)
Q Consensus        14 ~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~-   91 (201)
                      .+..+-+++++.+++.+|.+..+|..+-.+....|++. .-+++.+..+..+..+.-+|...--+...-+.|+.-+.+. 
T Consensus        92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~  171 (318)
T KOG0530|consen   92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD  171 (318)
T ss_pred             HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence            34566677888888888888888887777777777776 6677777777777777666665554544445455444444 


Q ss_pred             ---------------------------------------HHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         92 ---------------------------------------EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        92 ---------------------------------------~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                                                             .+.|...|+|..+|..+..++....+.....+........+
T Consensus       172 ~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~  251 (318)
T KOG0530|consen  172 ELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY  251 (318)
T ss_pred             HHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence                                                   44445556666666666665554231222455555555554


Q ss_pred             -cCCcccHHHHHHHHHHHHHhh
Q psy12642        133 -NLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus       133 -~~~p~~~~~~~~l~~~~~~~~  153 (201)
                       +.....|..+.-+...|...+
T Consensus       252 ~~~~~~sP~lla~l~d~~~e~~  273 (318)
T KOG0530|consen  252 LQLPKRSPFLLAFLLDLYAEDA  273 (318)
T ss_pred             hccCCCChhHHHHHHHHHHHHH
Confidence             333345556666666664433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.06  E-value=0.0013  Score=47.20  Aligned_cols=57  Identities=16%  Similarity=-0.027  Sum_probs=27.5

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD   67 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~   67 (201)
                      .+.++.+-|.+.|.++++.-|.....|+++|......|+++.|...|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344444444444444444444444444444444444444444444444444444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.03  E-value=0.12  Score=41.22  Aligned_cols=48  Identities=17%  Similarity=0.088  Sum_probs=28.1

Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      |+.++..|   +|.++.-+-.=..++.| .+.++..+|.|.....++.+|..
T Consensus       469 AEyLysqg---ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~  516 (549)
T PF07079_consen  469 AEYLYSQG---EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE  516 (549)
T ss_pred             HHHHHhcc---cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence            33445556   66666655555555666 46666666666666666666644

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4814|consensus

Probab=96.99  E-value=0.015  Score=47.80  Aligned_cols=96  Identities=16%  Similarity=0.026  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      ++.+.|.-.++..+|..++++|...+...|.|      ....+.++.||....+.+.|++++++|-+.+|.++..-+.+-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34455667788899999999999999887766      446777899999999999999999999999999999888888


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642        110 DILYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus       110 ~~~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                      .+....+   .-++|+.+.......
T Consensus       436 ~~~~~E~---~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAED---KSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhc---chHHHHHHHHHHHhh
Confidence            8878888   788888877765543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.92  E-value=0.002  Score=46.33  Aligned_cols=61  Identities=18%  Similarity=0.234  Sum_probs=56.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642         43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL  103 (201)
Q Consensus        43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  103 (201)
                      .....++.+.+.+.+++++.+.|.....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4556789999999999999999999999999999999999999999999999999998754

>smart00028 TPR Tetratricopeptide repeats

Probab=96.88  E-value=0.0021  Score=30.32  Aligned_cols=32  Identities=16%  Similarity=0.215  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642        103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus       103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      ..+..+|.++...+   +++.|+..|+++++.+|+
T Consensus         2 ~~~~~~a~~~~~~~---~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLG---DYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHh---hHHHHHHHHHHHHccCCC
Confidence            46788999999999   999999999999998886

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.88  E-value=0.028  Score=40.57  Aligned_cols=85  Identities=12%  Similarity=0.041  Sum_probs=43.1

Q ss_pred             ccCHHHHHHHHHHHHhcC-----cc--cHHHHHHHHHHHHHcCCHHHHH-------HHHHHHHHhc--CCC----HHHHH
Q psy12642         13 FFRYEEALEHLETIIKID-----ET--NTAARKRKICILKAKNKIPEAI-------KELTEYLKKF--MTD----QETWQ   72 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~-----~~--~~~~~~~~a~~~~~~~~~~~A~-------~~~~~~~~~~--p~~----~~~~~   72 (201)
                      ...+++|++.|.-++-..     +.  -+..+..+|++|...|+.+...       ..|.+++...  |..    ..+.+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            345666666665555321     11  1355566667777666643333       3333333221  111    34455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      .+|.++.+.|++++|..+|.+++..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            5666666666666666666666644

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.069  Score=43.64  Aligned_cols=132  Identities=18%  Similarity=0.012  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhcCcccHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-Hh
Q psy12642         19 ALEHLETIIKIDETNTAARKR--KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEE-LF   95 (201)
Q Consensus        19 A~~~~~~~l~~~~~~~~~~~~--~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al   95 (201)
                      ++..+..-+..+|.++..+..  +...+...+....+.-.+...+..+|++..+...++.+....|....++..+.+ +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            555566666667777766443  355666678888888999999999999999999999888888877777766655 88


Q ss_pred             hcCCCCHHHHHHH------HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         96 LHHPHNHLLHQRY------ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        96 ~~~~~~~~~~~~l------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      ...|.+......+      +......+   +..++....++++.+.|.+++..-.+.......-
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c  190 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLG---RTAEAELALERAVDLLPKYPRVLGALMTARQEQC  190 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhc
Confidence            8889887766555      77777778   8899999999999999999887777766644433

>KOG1550|consensus

Probab=96.86  E-value=0.21  Score=41.54  Aligned_cols=131  Identities=21%  Similarity=0.100  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHhcC---
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAK-----NKIPEAIKELTEYLKK-----FMTDQETWQELCDLYLSEG---   82 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~---   82 (201)
                      ...|..+++.+-...  +..+...+|.++..-     .+.+.|+.+++.+...     .-..+.+...+|.+|..-.   
T Consensus       228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            567888888876544  566677777777654     6899999999988761     1125567888999998743   


Q ss_pred             --CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642         83 --DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV  152 (201)
Q Consensus        83 --~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  152 (201)
                        ++..|+.++.++-...  ++.+.+.+|.++.......++..|.++|..|...  .+..+.+.++.||..=
T Consensus       306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG  373 (552)
T ss_pred             cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence              6788999999987654  5567788888866544223788999999998775  5678899999999753

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.86  E-value=0.13  Score=38.92  Aligned_cols=136  Identities=18%  Similarity=-0.005  Sum_probs=101.1

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAK----NKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----E   81 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~   81 (201)
                      ....+++..+...+..+-..  .++.....++.+|...    .+..+|+.++...  .....+.+.+.+|..|..    .
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcc
Confidence            44667889999999888762  3346777778877764    4678899999844  446678899999999987    4


Q ss_pred             CCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHc----CCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         82 GDYAKAVFCMEELFLHHPHN-HLLHQRYADILYTQ----GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      .+..+|..+|+++....... ......+|.++..-    +...+...|+..|.++....  ++.+.+.++.+|..
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~  199 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK  199 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence            58999999999998775443 34577888877664    21123448999999988776  67888999988865

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.82  E-value=0.14  Score=38.69  Aligned_cols=122  Identities=16%  Similarity=-0.008  Sum_probs=80.6

Q ss_pred             hccCHHHHHHHHHHHHhcC-cccH-------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----cCC---C-------H
Q psy12642         12 HFFRYEEALEHLETIIKID-ETNT-------AARKRKICILKAKN-KIPEAIKELTEYLKK----FMT---D-------Q   68 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~-~~~~-------~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~----~p~---~-------~   68 (201)
                      ++|+++.|..++.++-... ..++       ...+..|......+ +++.|..+++++.+.    .+.   .       .
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            4688899999888887654 2233       45556666677778 899999999888876    211   1       2


Q ss_pred             HHHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642         69 ETWQELCDLYLSEGDYA---KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                      .+...++.+|...+.++   +|...++.+-...|+.+..+...-.++...+   +.+.+.+.+.+.+..-+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~---~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF---DEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC---ChhHHHHHHHHHHHhcc
Confidence            35666788888777654   4555666666667776666644445555555   66777777777666543

It is also involved in sporulation [].

>KOG3617|consensus

Probab=96.76  E-value=0.034  Score=47.37  Aligned_cols=61  Identities=16%  Similarity=0.134  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhcC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEY----------LKKFM----------TDQETWQELCDLYLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~p----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   94 (201)
                      ..+++.+.-+...++.+.|+++|+++          +..+|          .++..|...|......|+.+.|+.+|..+
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            45666666667777777787777763          22222          23456666777777788888888777765


Q ss_pred             h
Q psy12642         95 F   95 (201)
Q Consensus        95 l   95 (201)
                      -
T Consensus       939 ~  939 (1416)
T KOG3617|consen  939 K  939 (1416)
T ss_pred             h
Confidence            3

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.74  E-value=0.074  Score=38.43  Aligned_cols=89  Identities=20%  Similarity=0.136  Sum_probs=64.3

Q ss_pred             HcCCHHHHHHHHHHHHHh----cCCC---HHHHHHHHHHHHhcCCH-------HHHHHHHHHHhhcCCC------CHHHH
Q psy12642         46 AKNKIPEAIKELTEYLKK----FMTD---QETWQELCDLYLSEGDY-------AKAVFCMEELFLHHPH------NHLLH  105 (201)
Q Consensus        46 ~~~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~~~~-------~~A~~~~~~al~~~~~------~~~~~  105 (201)
                      ....+++|++.|.-++-.    .++.   +..+..+|-+|...|+-       ..|+..|++++.....      ...+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            345678888877766542    2222   45677788899989984       4566667676654432      24578


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642        106 QRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus       106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      +.+|.+.++.|   ++++|+++|.+++.....
T Consensus       169 YLigeL~rrlg---~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  169 YLIGELNRRLG---NYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHhC---CHHHHHHHHHHHHcCCCC
Confidence            88999999999   999999999999986543

>KOG2300|consensus

Probab=96.70  E-value=0.18  Score=40.59  Aligned_cols=124  Identities=9%  Similarity=-0.012  Sum_probs=95.8

Q ss_pred             HHHhhhhcc--CHHHHHHHHHHHHhcCcccH---HHHHHHHHH-HHHcCCHHHHHHHHHHHHHhc---CCC----HHHHH
Q psy12642          6 YIIGCFHFF--RYEEALEHLETIIKIDETNT---AARKRKICI-LKAKNKIPEAIKELTEYLKKF---MTD----QETWQ   72 (201)
Q Consensus         6 ~~~~~~~~~--~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~---p~~----~~~~~   72 (201)
                      .+..+...|  +...++.+++..+.-.|.+.   ..+..+|.+ +....+++.|..+++++..+.   |+.    .++..
T Consensus        13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S   92 (629)
T KOG2300|consen   13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS   92 (629)
T ss_pred             HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence            344566677  88999999999998877653   566677775 556799999999999987653   443    34566


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         73 ELCDLYLSEG-DYAKAVFCMEELFLHHPHNHL----LHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        73 ~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      .++.+|.... .++.+...+++++++..+.|.    ..+.+++++....   ++..|++.+.-..
T Consensus        93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk---D~~sA~elLavga  154 (629)
T KOG2300|consen   93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK---DFPSALELLAVGA  154 (629)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc---cchhHHHHHhccc
Confidence            7888888776 899999999999999887664    5678899988888   9999998865443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.68  E-value=0.0041  Score=46.80  Aligned_cols=82  Identities=9%  Similarity=-0.002  Sum_probs=67.0

Q ss_pred             HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642         27 IKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE-LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH  105 (201)
Q Consensus        27 l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  105 (201)
                      ...-|+++..|...+......|.+.+--..+.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|++|..|
T Consensus       100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw  179 (435)
T COG5191         100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW  179 (435)
T ss_pred             hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence            33457888888888887778888888889999999999999998876 33445678899999999999999999998876


Q ss_pred             HHH
Q psy12642        106 QRY  108 (201)
Q Consensus       106 ~~l  108 (201)
                      ...
T Consensus       180 ~ey  182 (435)
T COG5191         180 IEY  182 (435)
T ss_pred             HHH
Confidence            543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.67  E-value=0.19  Score=40.11  Aligned_cols=122  Identities=15%  Similarity=0.026  Sum_probs=88.7

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARK-----RKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~-----~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      .+.+++++.+|...|.++.+...+.+..+.     .+..-.+-+++.+.-...+...-+..|..+......|...+++++
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~   94 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE   94 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence            367899999999999999887666543332     333333345777777777777777889888888888999999999


Q ss_pred             HHHHHHHHHHHhhcCCCC--H-------------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642         84 YAKAVFCMEELFLHHPHN--H-------------LLHQRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~--~-------------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      |.+|+..+......-..+  +             ..-.-.+.++...|   ++.+++..+++.+.
T Consensus        95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g---~f~EgR~iLn~i~~  156 (549)
T PF07079_consen   95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG---RFSEGRAILNRIIE  156 (549)
T ss_pred             HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC---CcchHHHHHHHHHH
Confidence            999999887665441111  1             11223477888889   99999999888774

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.65  E-value=0.18  Score=37.97  Aligned_cols=122  Identities=9%  Similarity=0.000  Sum_probs=86.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhc-CCC-------HHHHHHHHHHHHhcC-CHHHHHHHHHHHhhc----CC---CC------
Q psy12642         44 LKAKNKIPEAIKELTEYLKKF-MTD-------QETWQELCDLYLSEG-DYAKAVFCMEELFLH----HP---HN------  101 (201)
Q Consensus        44 ~~~~~~~~~A~~~~~~~~~~~-p~~-------~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~----~~---~~------  101 (201)
                      .+..|+++.|..++.++-... ..+       ...++..|......+ +++.|+.+++++...    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            457899999999999987654 223       345667788888888 999999999999877    21   11      


Q ss_pred             -HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        102 -HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       102 -~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                       ..++..++.++...+..+..++|....+.+-...|+.+..+..-..+..+.++.+.........
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m  147 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM  147 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence             1256778888888885566778888888887788887777655555555556555554444333

It is also involved in sporulation [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.64  E-value=0.084  Score=36.95  Aligned_cols=99  Identities=11%  Similarity=-0.010  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCHH----H
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHH--PHNHL----L  104 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~----~  104 (201)
                      ..++..+|..|...|+.+.|++.|.++.......   .+.++.+..+....+++.....++.++-..-  +.++.    .
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3778889999999999999999999987754332   4677778888889999999999988887543  33343    3


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642        105 HQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus       105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      ...-|..+...+   +|..|...|..+....
T Consensus       116 k~~~gL~~l~~r---~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  116 KVYEGLANLAQR---DFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHhc---hHHHHHHHHHccCcCC
Confidence            344566667778   9999999998876544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.028  Score=41.61  Aligned_cols=61  Identities=15%  Similarity=0.087  Sum_probs=31.0

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      .+...++++.|..+.++.+.++|.++.-+...|.+|...+   .+.-|+..+...++..|+.+.
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~---c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLG---CYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC---CchhhHHHHHHHHHhCCCchH
Confidence            3444455555555555555555555555555555555555   455555555555555554443

>KOG1258|consensus

Probab=96.55  E-value=0.34  Score=39.82  Aligned_cols=117  Identities=12%  Similarity=0.007  Sum_probs=98.8

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~   84 (201)
                      |..--...|+++...-.|+.++--.......|...+......|+.+-+-..+..+.+.. |..+.....-+.+.-..|++
T Consensus       303 yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~  382 (577)
T KOG1258|consen  303 YLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNF  382 (577)
T ss_pred             HhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence            34444568999999999999998888889999999999999999999988887777754 56677777778888889999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI  125 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~  125 (201)
                      ..|...+++.....|+...+-.......+..|   +.+.+.
T Consensus       383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~---~~~~~~  420 (577)
T KOG1258|consen  383 DDAKVILQRIESEYPGLVEVVLRKINWERRKG---NLEDAN  420 (577)
T ss_pred             HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc---chhhhh
Confidence            99999999999888998888888888888888   787777

>KOG3364|consensus

Probab=96.44  E-value=0.14  Score=33.95  Aligned_cols=82  Identities=13%  Similarity=0.072  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHhh-cCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642         68 QETWQELCDLYLSEG---DYAKAVFCMEELFL-HHPH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~---~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                      ....+.++.++.+..   +..+.+..++..++ -.|. .-...+.++..+++.+   +|+.++++....++..|++..+.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk---eY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK---EYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh---hHHHHHHHHHHHHhhCCCcHHHH
Confidence            456667777776554   46788999999996 4443 3557888999999999   99999999999999999998876


Q ss_pred             HHHHHHHHHh
Q psy12642        143 YGLALSCHQV  152 (201)
Q Consensus       143 ~~l~~~~~~~  152 (201)
                      ..--.+...+
T Consensus       109 ~Lk~~ied~i  118 (149)
T KOG3364|consen  109 ELKETIEDKI  118 (149)
T ss_pred             HHHHHHHHHH
Confidence            6554444443

>KOG4814|consensus

Probab=96.41  E-value=0.095  Score=43.42  Aligned_cols=87  Identities=7%  Similarity=-0.002  Sum_probs=73.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLHHPHNH------LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL  147 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  147 (201)
                      -+.-.++..+|..++++|...+..-|.|.      .....++.||....   +.+.|+++++.|-+.+|.++-....+..
T Consensus       360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~---QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE---QLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            45667889999999999999998777553      45678889999999   9999999999999999999988888888


Q ss_pred             HHHHhhhhhhhhhhhH
Q psy12642        148 SCHQVLTSAKCSAAKK  163 (201)
Q Consensus       148 ~~~~~~~~~~a~~~~~  163 (201)
                      +....|..++|.....
T Consensus       437 ~~~~E~~Se~AL~~~~  452 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQ  452 (872)
T ss_pred             HHHHhcchHHHHHHHH
Confidence            8888888888865433

>KOG1310|consensus

Probab=96.36  E-value=0.019  Score=46.28  Aligned_cols=88  Identities=15%  Similarity=0.106  Sum_probs=64.2

Q ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642         14 FRYEEALEHLETIIKIDETNTAARKRKICILKAK---NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        14 ~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      +....|+..|.+++...|.....+...+.++++.   |+.-.|+.....+++++|....+|+.++.++...+++.+|+.+
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            3556677777777777777777777777776664   4555666667777777777777888888888888888888877


Q ss_pred             HHHHhhcCCCC
Q psy12642         91 MEELFLHHPHN  101 (201)
Q Consensus        91 ~~~al~~~~~~  101 (201)
                      ...+....|.+
T Consensus       468 ~~alq~~~Ptd  478 (758)
T KOG1310|consen  468 HWALQMSFPTD  478 (758)
T ss_pred             HHHHhhcCchh
Confidence            77777777744

>KOG2300|consensus

Probab=96.32  E-value=0.44  Score=38.47  Aligned_cols=171  Identities=16%  Similarity=0.093  Sum_probs=117.3

Q ss_pred             hhhccCHHHHHHHHHHHHhcC---cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CH--HHHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKID---ET-------NTAARKRKICILKAKNKIPEAIKELTEYLKKFMT-DQ--ETWQELCD   76 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~---~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~--~~~~~l~~   76 (201)
                      -.-.|++.+|++....+.+..   |.       .+..+..+|......|.++.|...|..+.+.... +.  .+..+++.
T Consensus       333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi  412 (629)
T KOG2300|consen  333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI  412 (629)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence            345799999999888877643   33       3456777788777889999999999999886432 32  34456789


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCC----------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------cHH
Q psy12642         77 LYLSEGDYAKAVFCMEELFLHHPHN----------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------NIR  140 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~  140 (201)
                      .|.+.|+-+.--+.++..   .|.|          ..+++..|...+..+   ++.+|...+.+.++...-      ..-
T Consensus       413 ~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn---~lnEaK~~l~e~Lkmanaed~~rL~a~  486 (629)
T KOG2300|consen  413 SYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQN---DLNEAKRFLRETLKMANAEDLNRLTAC  486 (629)
T ss_pred             HHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence            999988877655555443   4432          235677788888889   999999999999987621      122


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHHH------H--HHhHHHHHHHHHHHHhhhc
Q psy12642        141 ALYGLALSCHQVLTSAKCSAAKKKEI------S--KQMMWVSKHLARQYEEQQG  186 (201)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~~~~~------~--~~~~~~~~~l~~~y~~~~~  186 (201)
                      .+..|+.+....|+..++..-....+      .  ...-|+..-+.+.|++...
T Consensus       487 ~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  487 SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE  540 (629)
T ss_pred             HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence            45567777888888888855332221      1  2334666667777765443

>KOG3617|consensus

Probab=96.22  E-value=0.04  Score=46.98  Aligned_cols=112  Identities=15%  Similarity=0.054  Sum_probs=75.7

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHH----------hcCc----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETII----------KIDE----------TNTAARKRKICILKAKNKIPEAIKELTEYLKK   63 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l----------~~~~----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   63 (201)
                      .-|+-.+...++.+.|+++|+++-          ..+|          .++..|..-|...-..|+.+.|+.+|..+-+ 
T Consensus       862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-  940 (1416)
T KOG3617|consen  862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-  940 (1416)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence            346666777888999999888742          2222          2234555556667778899999888887654 


Q ss_pred             cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         64 FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                             |+.+..+.+-+|+.++|...-+     ...|..+.+.+|.-|...|   ++.+|+..|.++
T Consensus       941 -------~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g---~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  941 -------YFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDG---DVVKAVKFFTRA  993 (1416)
T ss_pred             -------hhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhH---HHHHHHHHHHHH
Confidence                   4555666667777777765443     3456667777777777777   777777777664

>KOG1914|consensus

Probab=96.21  E-value=0.14  Score=41.68  Aligned_cols=82  Identities=10%  Similarity=0.125  Sum_probs=69.5

Q ss_pred             HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642         24 ETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL  103 (201)
Q Consensus        24 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  103 (201)
                      ++-++.+|.+...|..+..-+..+ -+++..+.+++.+..+|..+.+|.......+..++|+.-...|.+++..-=+ ..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence            567789999999999998866655 8999999999999999999999999999999999999999999999854322 44


Q ss_pred             HHHH
Q psy12642        104 LHQR  107 (201)
Q Consensus       104 ~~~~  107 (201)
                      +|..
T Consensus        88 LW~l   91 (656)
T KOG1914|consen   88 LWKL   91 (656)
T ss_pred             HHHH
Confidence            5443

>KOG0529|consensus

Probab=96.20  E-value=0.45  Score=37.45  Aligned_cols=138  Identities=14%  Similarity=0.073  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAK------------NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG-   82 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-   82 (201)
                      -.++++.-.+.+..+|....+|...-.++...            .-.++-+.....+++.+|++..+|+....+..+.+ 
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~  124 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH  124 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence            34677777888888998887776654443322            23466677888899999999999999988887665 


Q ss_pred             -CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         83 -DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        83 -~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                       ++..=+...+++++.+|.|-.+|...=.+.... .+.+...+-+++..+++.-++.|..+|.+...+...+-
T Consensus       125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~  197 (421)
T KOG0529|consen  125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLH  197 (421)
T ss_pred             chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhc
Confidence             368889999999999999877765443332222 21124677889999999999999999999888887543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.19  E-value=0.18  Score=32.70  Aligned_cols=86  Identities=13%  Similarity=0.082  Sum_probs=48.8

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hcCCCHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDET------------NTAARKRKICILKAKNKIPEAIKELTEYLK-------KFMTDQET   70 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~   70 (201)
                      -...|.|++|...+.++++...+            +..++-.++..+..+|+|++++.....++.       ++.+....
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl   98 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL   98 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence            34567788888888777765422            235666777777777877776666655554       22333222


Q ss_pred             H----HHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642         71 W----QELCDLYLSEGDYAKAVFCMEELF   95 (201)
Q Consensus        71 ~----~~l~~~~~~~~~~~~A~~~~~~al   95 (201)
                      |    +..+..+...|+.++|+..|+.+-
T Consensus        99 WIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   99 WIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            2    334555556666666666665543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.17  E-value=0.16  Score=35.60  Aligned_cols=95  Identities=12%  Similarity=-0.092  Sum_probs=71.8

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHH----HHHHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDET---NTAARKRKICILKAKNKIPEAIKELTEYLKKF--MTDQE----TWQELC   75 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~----~~~~l~   75 (201)
                      -.+..|.+.|+.+.|++.|.++.+....   -...+..+..+.+..+++......+.++-...  +.+..    ....-|
T Consensus        41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~g  120 (177)
T PF10602_consen   41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEG  120 (177)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            4556688999999999999998876532   23667778888999999999999998876643  23333    233357


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642         76 DLYLSEGDYAKAVFCMEELFLHHP   99 (201)
Q Consensus        76 ~~~~~~~~~~~A~~~~~~al~~~~   99 (201)
                      ..++..++|.+|...|-.++....
T Consensus       121 L~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  121 LANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHhchHHHHHHHHHccCcCCC
Confidence            778889999999999988765543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.12  E-value=0.16  Score=44.55  Aligned_cols=95  Identities=14%  Similarity=0.073  Sum_probs=74.4

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAK----N---KIPEAIKELTEYLKKFMTDQETWQELCDLY   78 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~----~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~   78 (201)
                      ++...+.|++|+..|.++-..-|.-   ..+.++.|.+...+    |   .+++|+..|++.. ..|.-|--|...+.+|
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  562 (932)
T PRK13184        484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY  562 (932)
T ss_pred             HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence            3556678999999999998877643   47777888776653    3   3677777777644 3466666777888999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCHHH
Q psy12642         79 LSEGDYAKAVFCMEELFLHHPHNHLL  104 (201)
Q Consensus        79 ~~~~~~~~A~~~~~~al~~~~~~~~~  104 (201)
                      .++|++++-++++.-+++..|..|..
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        563 QRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            99999999999999999999988764

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.12  E-value=0.23  Score=33.46  Aligned_cols=74  Identities=16%  Similarity=0.018  Sum_probs=66.3

Q ss_pred             hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642         12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      ..++++++...++.+--..|+.+.+...-|.++...|++.+|+..++......+..+...-.++.|+.-.|+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            37899999999999999999999999999999999999999999999999888888877777888888887754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.10  E-value=0.5  Score=37.10  Aligned_cols=133  Identities=14%  Similarity=-0.128  Sum_probs=95.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcC-----cc---------------------cH---HHHHHHHHHHHHcCCHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKID-----ET---------------------NT---AARKRKICILKAKNKIPEAIKE   56 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~-----~~---------------------~~---~~~~~~a~~~~~~~~~~~A~~~   56 (201)
                      ...-+..+|++..|.+++++++-.-     |.                     |.   .+.++......+.|-+..|.++
T Consensus        46 ls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~  125 (360)
T PF04910_consen   46 LSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEW  125 (360)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3444667899999999998886421     11                     11   4555667788889999999999


Q ss_pred             HHHHHHhcCC-CHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHcCCcccH--------
Q psy12642         57 LTEYLKKFMT-DQETWQELC-DLYLSEGDYAKAVFCMEELFLHHPH-----NHLLHQRYADILYTQGGLENI--------  121 (201)
Q Consensus        57 ~~~~~~~~p~-~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~~--------  121 (201)
                      .+-.+.++|. ||-.....- ....+.++|+--+..++........     -|..-+..+.+++..+   +.        
T Consensus       126 ~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~---~~~~~~~~~~  202 (360)
T PF04910_consen  126 CKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE---KEESSQSSAQ  202 (360)
T ss_pred             HHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc---Cccccccccc
Confidence            9999999999 765444444 4445778888788877776653222     2345677777777777   55        


Q ss_pred             -------HHHHHHHHHHHcCCcccHHH
Q psy12642        122 -------ELAISHYLMAINLNEKNIRA  141 (201)
Q Consensus       122 -------~~A~~~~~~al~~~p~~~~~  141 (201)
                             +.|...+.+|+...|.-...
T Consensus       203 ~~~~~~~~~A~~~L~~Ai~~fP~vl~~  229 (360)
T PF04910_consen  203 SGRSENSESADEALQKAILRFPWVLVP  229 (360)
T ss_pred             cccccchhHHHHHHHHHHHHhHHHHHH
Confidence                   89999999999998875443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=96.08  E-value=0.28  Score=34.84  Aligned_cols=75  Identities=19%  Similarity=0.069  Sum_probs=57.7

Q ss_pred             hcCCHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc----cHHHHHHHHHHHHHhhh
Q psy12642         80 SEGDYAKAVFCMEELFLHHP-HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK----NIRALYGLALSCHQVLT  154 (201)
Q Consensus        80 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~  154 (201)
                      ..-.=+.|...|-++-.... +++...+.+|..|. ..   +.++++..+.+++++.+.    ++..+..|+.++.+.|+
T Consensus       118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-kr---D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KR---DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-cc---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            34344667777766544322 67888899988766 55   699999999999998754    58899999999999999


Q ss_pred             hhhh
Q psy12642        155 SAKC  158 (201)
Q Consensus       155 ~~~a  158 (201)
                      ++.|
T Consensus       194 ~e~A  197 (203)
T PF11207_consen  194 YEQA  197 (203)
T ss_pred             hhhh
Confidence            8887

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.07  E-value=0.02  Score=29.21  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      .++..+|.+|..+|++++|..++++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34566677777777777777777776653

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.07  E-value=0.15  Score=40.24  Aligned_cols=86  Identities=9%  Similarity=0.065  Sum_probs=55.6

Q ss_pred             hhhhccCHHHHHHHHHHHHhcC--------cccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKID--------ETNT----------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET   70 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~--------~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   70 (201)
                      .++++++|..|..-|..+++..        |..+          .+--.+..||+.+++.+.|+....+.|.++|..+.-
T Consensus       185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frn  264 (569)
T PF15015_consen  185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN  264 (569)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence            4566666666666666666643        1111          223346667777777777777777777777777777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~a   94 (201)
                      +...+.++....+|.+|...+--+
T Consensus       265 HLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  265 HLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777776554433

>KOG0529|consensus

Probab=95.98  E-value=0.18  Score=39.53  Aligned_cols=140  Identities=11%  Similarity=0.036  Sum_probs=106.5

Q ss_pred             hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHH
Q psy12642         12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN--KIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGDYA   85 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~   85 (201)
                      ++.-.++-+.+...++..+|.+..+|..+..++...+  ++..-+.+.+++++.+|.+..+|...-.+...    .....
T Consensus        87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~  166 (421)
T KOG0529|consen   87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK  166 (421)
T ss_pred             HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence            3445677788999999999999999999999998765  46888999999999999998777664333322    22366


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC---------cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGG---------LENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      +=+.+..++|..++.|..+|.....++...-+         ..-...-++.-..++-.+|++..+|++.-....+
T Consensus       167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~  241 (421)
T KOG0529|consen  167 EELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR  241 (421)
T ss_pred             hHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence            77888899999999999999988877663321         1134566777888899999999988774444433

>KOG1310|consensus

Probab=95.97  E-value=0.061  Score=43.57  Aligned_cols=91  Identities=13%  Similarity=0.016  Sum_probs=75.8

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642         46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE---GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE  122 (201)
Q Consensus        46 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~  122 (201)
                      ..+....++..+.+++...|.....+...+.++++.   |+.-.|+...-.++.++|....+++.++.++...+   .+.
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~---r~~  462 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT---RYL  462 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh---hHH
Confidence            345567888999999999999888888888777653   56677888888899999999999999999999999   999


Q ss_pred             HHHHHHHHHHcCCcccH
Q psy12642        123 LAISHYLMAINLNEKNI  139 (201)
Q Consensus       123 ~A~~~~~~al~~~p~~~  139 (201)
                      +|+.+...+....|.+.
T Consensus       463 eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  463 EALSCHWALQMSFPTDV  479 (758)
T ss_pred             HhhhhHHHHhhcCchhh
Confidence            99999888877778544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.84  E-value=0.12  Score=30.67  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=33.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH---HHHHhcCCHHHHHHHHHH
Q psy12642         40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC---DLYLSEGDYAKAVFCMEE   93 (201)
Q Consensus        40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~---~~~~~~~~~~~A~~~~~~   93 (201)
                      .|.-++..++.++|+..+.++++..++.+.-+..+|   .+|...|+|.+.+.+--+
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455667777777777777777666655555444   456667777776665443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.83  E-value=0.079  Score=39.72  Aligned_cols=64  Identities=16%  Similarity=0.161  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642         67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      ...++..++..+...|+++.+...+++.+..+|.+...+..+-..+...|   +...|+..|.+.-+
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g---~~~~ai~~y~~l~~  215 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG---RQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC---CchHHHHHHHHHHH
Confidence            34567778888888888888888888888888888888888888888888   88888888877665

>KOG1914|consensus

Probab=95.80  E-value=0.86  Score=37.36  Aligned_cols=143  Identities=10%  Similarity=0.044  Sum_probs=94.4

Q ss_pred             CHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcCCHHHHHHHHH
Q psy12642         15 RYEEALEHLETIIKIDETNT-AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL-YLSEGDYAKAVFCME   92 (201)
Q Consensus        15 ~~~~A~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~   92 (201)
                      .++..-+.+++++.....++ -++..+...-.+..=.+.|..+|.++.+..-....++..-|.. |..+++.+-|...|+
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe  425 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE  425 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence            45666667777766443222 3344444444455557777788888776433333344333322 446788888888888


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--Ccc-cHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--NEK-NIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      -.++..++++..-..+...+...+   +-..+...|++++..  .|+ ..+.|..+...-...|+......
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lN---dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~  493 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLN---DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK  493 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhC---cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence            888888888888888888888888   778888888888876  443 34677777777777777766644

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.80  E-value=0.092  Score=32.56  Aligned_cols=53  Identities=21%  Similarity=0.248  Sum_probs=27.2

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         45 KAKNKIPEAIKELTEYLKKFMTD---------QETWQELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        45 ~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      ...|++..|++.+.+..+.....         ..+...+|.++...|++++|+..+++++.+
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34455555555555544432111         123444556666666666666666666654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.11  Score=38.65  Aligned_cols=68  Identities=16%  Similarity=0.093  Sum_probs=46.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      ..+...++++.|....++.+..+|.++.-+.-.|.+|.+.|.+.-|+..++..+...|+++.+-...+
T Consensus       189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            34556677777777777777777777777777777777777777777777777777777665544433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.70  E-value=0.055  Score=27.04  Aligned_cols=30  Identities=17%  Similarity=0.183  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHH--HHHHhhcCC
Q psy12642         70 TWQELCDLYLSEGDYAKAVFC--MEELFLHHP   99 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~--~~~al~~~~   99 (201)
                      .+..+|..+..+|++++|+..  |.-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            445555555666666666666  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1258|consensus

Probab=95.68  E-value=0.8  Score=37.77  Aligned_cols=123  Identities=10%  Similarity=-0.033  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHNHLLHQRYADIL  112 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~  112 (201)
                      ...|......-...|++......+++++-.-.....+|...+......|+..-|-..+..+.+. .|..+.....-+.+-
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~  376 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE  376 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence            3566666777778899999999999999877777899999999999999999999888888765 567788888888888


Q ss_pred             HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642        113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus       113 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      -..|   ++..|...+++..+..|+...+-..-+....+.|+.+.+.
T Consensus       377 e~~~---n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  377 ESNG---NFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             Hhhc---cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            8889   9999999999999888998887777777777888777775

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.65  E-value=0.12  Score=38.86  Aligned_cols=75  Identities=15%  Similarity=0.055  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +..-+...++.++  .....++..++..+...+   +++.++..+++.+..+|.+...|..+...|...|+...|+....
T Consensus       137 f~~WV~~~R~~l~--e~~~~~l~~lae~~~~~~---~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~  211 (280)
T COG3629         137 FDEWVLEQRRALE--ELFIKALTKLAEALIACG---RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYR  211 (280)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence            4444444444442  223557788888888888   88899999999999999888888889999999888888877554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.63  E-value=0.075  Score=41.88  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=50.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCC-------------C-----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLHHPH-------------N-----HLLHQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~~~~-------------~-----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                      |..++++++|..|..-|..++.+...             +     ......+..||..++   +.+.|+.+-.+.+-++|
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~r---kpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMR---KPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcC---CCchHHHHHhhhhhcCc
Confidence            34455666666666655555544211             1     113345666677777   67777777777777777


Q ss_pred             ccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        137 KNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      .+...+..-+.|.+.+.++.+|.+
T Consensus       260 ~~frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  260 SYFRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777766643

>KOG2581|consensus

Probab=95.59  E-value=0.4  Score=37.75  Aligned_cols=129  Identities=12%  Similarity=0.015  Sum_probs=89.9

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC-HHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDE---------TNTAARKRKICILKAKNKIPEAIKELTEYLKKF-----MTD-QETW   71 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~-~~~~   71 (201)
                      .+-+.+++++.+|..+-+..+..-.         -....|+.+..++-..|+...-...+...+...     ... ....
T Consensus       133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi  212 (493)
T KOG2581|consen  133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI  212 (493)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence            3445667899999888777665321         112556666777777888777666666655532     111 3344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhc--CC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELFLH--HP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al~~--~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      ..+-..|...+.|+.|-....+..--  ..  .-...++.+|.+..-..   +|..|.++|.+|+...|.+
T Consensus       213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiql---dYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQL---DYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhc---chhHHHHHHHHHHHhCcch
Confidence            55667788889999998887776511  11  22456788999999999   9999999999999999973

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.97  Score=37.32  Aligned_cols=108  Identities=20%  Similarity=-0.005  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHH
Q psy12642         48 NKIPEAIKELTEYLKKFMTDQETWQE--LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI  125 (201)
Q Consensus        48 ~~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~  125 (201)
                      |....++..+...+..+|.++.+...  +...+...+....+...+..++..+|.+..+..+++......+   ....+.
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~---~~~~~~  121 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDG---LQFLAL  121 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhh---hHHHHH
Confidence            44444677777777788888877544  4666777888889999999999999999999999999988777   555554


Q ss_pred             -HHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642        126 -SHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus       126 -~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  159 (201)
                       .....+....|++......+..+|. .+++.++.
T Consensus       122 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l  155 (620)
T COG3914         122 ADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLL  155 (620)
T ss_pred             HHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHh
Confidence             4555588999999988888877777 77666663

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.53  E-value=0.37  Score=31.27  Aligned_cols=88  Identities=16%  Similarity=0.037  Sum_probs=61.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------cCCCCHH
Q psy12642         43 ILKAKNKIPEAIKELTEYLKKFMTD------------QETWQELCDLYLSEGDYAKAVFCMEELFL-------HHPHNHL  103 (201)
Q Consensus        43 ~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~~~~~~  103 (201)
                      -.+..|.+++|...+.+++....+-            .-++..|+..+...|+|++++..-.+++.       ++.+...
T Consensus        18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk   97 (144)
T PF12968_consen   18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK   97 (144)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence            3455688999999999988753221            23556678888999999988777776663       4444433


Q ss_pred             ----HHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642        104 ----LHQRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus       104 ----~~~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                          +.+..+..+...|   +.++|+..|+.+-+
T Consensus        98 lWIaaVfsra~Al~~~G---r~~eA~~~fr~agE  128 (144)
T PF12968_consen   98 LWIAAVFSRAVALEGLG---RKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHH
Confidence                3467788888888   99999999888754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.44  E-value=1.1  Score=36.08  Aligned_cols=159  Identities=11%  Similarity=-0.018  Sum_probs=90.1

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------c-------CCCH-
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------F-------MTDQ-   68 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~-------p~~~-   68 (201)
                      -|...+...++-+.|+..........|.   ....++.+|-..++.+....+|+++++.        .       .+++ 
T Consensus       307 dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e  383 (660)
T COG5107         307 DYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFE  383 (660)
T ss_pred             HHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCcc
Confidence            3444455667777777766666554444   6667777777777766666656554431        0       0111 


Q ss_pred             ---H-----------HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHcCCcccHHHHHHHHHHHHc
Q psy12642         69 ---E-----------TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI-LYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        69 ---~-----------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~~~~A~~~~~~al~  133 (201)
                         +           +|..+-..-.+..-.+.|...|-++-+..--.+.++..-|.+ +...+   ++..|...|+-.+.
T Consensus       384 ~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~---d~~ta~~ifelGl~  460 (660)
T COG5107         384 YSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG---DRATAYNIFELGLL  460 (660)
T ss_pred             ccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC---CcchHHHHHHHHHH
Confidence               1           111111222233445666677766655432222222222222 34556   78888899998888


Q ss_pred             CCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy12642        134 LNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ  169 (201)
Q Consensus       134 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  169 (201)
                      ..|+.+......-......++.+.|+.--++.+..+
T Consensus       461 ~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~  496 (660)
T COG5107         461 KFPDSTLYKEKYLLFLIRINDEENARALFETSVERL  496 (660)
T ss_pred             hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence            888877655555566667787777766555444333

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.34  E-value=0.17  Score=31.31  Aligned_cols=57  Identities=18%  Similarity=0.135  Sum_probs=44.7

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDET---------NTAARKRKICILKAKNKIPEAIKELTEYLKKFM   65 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p   65 (201)
                      .....|+|.+|++.+.+.+.....         ...+...++.+....|++++|+..+++++++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345679999998888887764321         235667789999999999999999999998643

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.29  E-value=0.13  Score=38.47  Aligned_cols=62  Identities=11%  Similarity=0.047  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642         19 ALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS   80 (201)
Q Consensus        19 A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~   80 (201)
                      |..+|.++....|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+...+..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666655555554333335555555555444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.25  E-value=0.08  Score=26.82  Aligned_cols=29  Identities=24%  Similarity=0.243  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKK   63 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   63 (201)
                      .++..+|.+|...|++++|+.++++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46778999999999999999999999874

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.14  E-value=0.16  Score=38.00  Aligned_cols=62  Identities=11%  Similarity=0.108  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         53 AIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        53 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      |+.+|.+++...|++...++.+|.++...|+.-.|+-+|-+++......+.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56788888888888888888888888888888888888888876655557677777766555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.05  E-value=0.59  Score=33.28  Aligned_cols=79  Identities=16%  Similarity=0.070  Sum_probs=57.3

Q ss_pred             HHHcCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCCc
Q psy12642         44 LKAKNKIPEAIKELTEYLK-KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH----NHLLHQRYADILYTQGGL  118 (201)
Q Consensus        44 ~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~  118 (201)
                      ++..-.-+.|...|-++-. -.-++++..+.+|..|. ..+.++++..+.+++.+.+.    |+..+..++.++...+  
T Consensus       116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~--  192 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK--  192 (203)
T ss_pred             HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc--
Confidence            3334333556655554332 22356888888887766 78899999999999987543    5889999999999999  


Q ss_pred             ccHHHHHH
Q psy12642        119 ENIELAIS  126 (201)
Q Consensus       119 ~~~~~A~~  126 (201)
                       +++.|.-
T Consensus       193 -~~e~AYi  199 (203)
T PF11207_consen  193 -NYEQAYI  199 (203)
T ss_pred             -chhhhhh
Confidence             9988753

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.04  E-value=0.29  Score=29.11  Aligned_cols=56  Identities=13%  Similarity=0.004  Sum_probs=44.0

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHH---HHHHHHcCCHHHHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRK---ICILKAKNKIPEAIKELTEYL   61 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~---a~~~~~~~~~~~A~~~~~~~~   61 (201)
                      -++.++...+.++|+..+.++++..++.+..+..+   ..++...|++.+.+.+...=+
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35668899999999999999999888777555544   557888999999887755433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.95  E-value=0.27  Score=43.24  Aligned_cols=99  Identities=16%  Similarity=0.055  Sum_probs=79.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc----C---CHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642         41 ICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSE----G---DYAKAVFCMEELFLHHPHNHLLHQRYAD  110 (201)
Q Consensus        41 a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----~---~~~~A~~~~~~al~~~~~~~~~~~~la~  110 (201)
                      ..++...+.|+.|+..|++....+|+.   .++.+..|.....+    |   .+++|+.-|++.- -.|.-|.-+...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence            456777889999999999999999876   46777788766532    3   4677888777654 45677777888889


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHcCCcccHHHHH
Q psy12642        111 ILYTQGGLENIELAISHYLMAINLNEKNIRALY  143 (201)
Q Consensus       111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  143 (201)
                      +|..++   ++++-+++|.-+++..|..|..-.
T Consensus       561 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  590 (932)
T PRK13184        561 VYQRLG---EYNEEIKSLLLALKRYSQHPEISR  590 (932)
T ss_pred             HHHHhh---hHHHHHHHHHHHHHhcCCCCccHH
Confidence            999999   999999999999999998775433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.55  E-value=0.064  Score=24.49  Aligned_cols=20  Identities=25%  Similarity=0.267  Sum_probs=8.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHH
Q psy12642         72 QELCDLYLSEGDYAKAVFCM   91 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~   91 (201)
                      ..+|.++..+|++++|...+
T Consensus         5 ~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHH
Confidence            33444444444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1839|consensus

Probab=94.43  E-value=0.77  Score=41.26  Aligned_cols=145  Identities=13%  Similarity=0.050  Sum_probs=105.3

Q ss_pred             hhccCHHHHHH------HHH-HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHH
Q psy12642         11 FHFFRYEEALE------HLE-TIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------FMTDQETWQELC   75 (201)
Q Consensus        11 ~~~~~~~~A~~------~~~-~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~   75 (201)
                      ...|.+.+|.+      .+. .....+|.....+..++.++...++.++|+..-.++.-.        .|+....+..++
T Consensus       943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen  943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred             hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence            34556665655      555 333357888899999999999999999999887665432        244456777788


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc--------cH
Q psy12642         76 DLYLSEGDYAKAVFCMEELFLH--------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK--------NI  139 (201)
Q Consensus        76 ~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~  139 (201)
                      ...+..++...|+..+.++..+        .|.-.....+++.++...+   +++.|+++.+.|...+..        ..
T Consensus      1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~---e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVE---EADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred             HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHH---HHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence            8888999999999999888754        3444556677888888888   999999999999986532        23


Q ss_pred             HHHHHHHHHHHHhhhhhhh
Q psy12642        140 RALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       140 ~~~~~l~~~~~~~~~~~~a  158 (201)
                      ..+..++....-++++..|
T Consensus      1100 ~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred             hHHHHHHHHHhhhHHHHHH
Confidence            3445556666666666555

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.40  E-value=0.086  Score=26.66  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      ++..+|.+-+..++|++|+..|++++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.22  E-value=0.083  Score=24.09  Aligned_cols=24  Identities=29%  Similarity=0.117  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELT   58 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~   58 (201)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456678888888888888887765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2041|consensus

Probab=94.10  E-value=3  Score=35.58  Aligned_cols=60  Identities=15%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHh----------------------hcCCCCHHHHHHHHHHHHHcCCcccHHHHH
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELF----------------------LHHPHNHLLHQRYADILYTQGGLENIELAI  125 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al----------------------~~~~~~~~~~~~la~~~~~~~~~~~~~~A~  125 (201)
                      -.+|..+|..+..+..|++|.++|.+.-                      ..-|++...+-.+|..+...|   --++|+
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svG---MC~qAV  872 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVG---MCDQAV  872 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhc---hHHHHH
Confidence            3567777777777777777777766432                      122455555555555555555   556666


Q ss_pred             HHHHH
Q psy12642        126 SHYLM  130 (201)
Q Consensus       126 ~~~~~  130 (201)
                      +.|.+
T Consensus       873 ~a~Lr  877 (1189)
T KOG2041|consen  873 EAYLR  877 (1189)
T ss_pred             HHHHh
Confidence            55554

>KOG0890|consensus

Probab=93.95  E-value=1.2  Score=42.50  Aligned_cols=124  Identities=15%  Similarity=0.068  Sum_probs=93.2

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----------
Q psy12642         32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN----------  101 (201)
Q Consensus        32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------  101 (201)
                      .-..+|...|.+....|+++.|...+-.+.+..  -+.+....|...+.+|+...|+..+++.+..+-.+          
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence            446889999999999999999999888877755  46788899999999999999999999999553221          


Q ss_pred             -H------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642        102 -H------LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       102 -~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                       .      .+...++...-..+. ..-..-++.|..+.+..|.....++.+|..|.+.-...++
T Consensus      1746 ~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~ 1808 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKS 1808 (2382)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhc
Confidence             1      123334444444441 2346778999999999998888888898777765544443

>KOG0985|consensus

Probab=93.91  E-value=4.5  Score=36.18  Aligned_cols=61  Identities=15%  Similarity=0.131  Sum_probs=50.2

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      +.+.+|..+|......|...+|++.|-+     .+||..+.....+..+.|.|++-++++..+.+.
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            4568899999999999999999987755     466777888888888999999999988877654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.82  E-value=0.27  Score=23.09  Aligned_cols=24  Identities=33%  Similarity=0.427  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHH
Q psy12642         50 IPEAIKELTEYLKKFMTDQETWQE   73 (201)
Q Consensus        50 ~~~A~~~~~~~~~~~p~~~~~~~~   73 (201)
                      .+.+...|++++...|.++.+|..
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~   26 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLK   26 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHH
Confidence            334444444444444444444443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.81  E-value=3.7  Score=34.80  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhcCc----ccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHHHhcCCH
Q psy12642         16 YEEALEHLETIIKIDE----TNTAARKRKICILK-AKNKIPEAIKELTEYLKKFMT--DQ----ETWQELCDLYLSEGDY   84 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~----~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~~~~   84 (201)
                      ...|+.+++-+++..+    ....+++.+|.+++ +..+++.|..++++++.+...  ..    .+.+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            4457888888885332    23477888999887 789999999999999876533  32    2344578888888877


Q ss_pred             HHHHHHHHHHhhcCCC----CHHHHHHHHHH--HHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         85 AKAVFCMEELFLHHPH----NHLLHQRYADI--LYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~----~~~~~~~la~~--~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      . |...+++.+.....    .+...+.+-.+  ....+   ++..|++.++......
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~---d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK---DYNAALENLQSIAQLA  169 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHh
Confidence            7 99999999976554    33333444322  22336   8999999999888765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.77  E-value=1.8  Score=32.77  Aligned_cols=66  Identities=15%  Similarity=0.006  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhHH
Q psy12642        104 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMW  172 (201)
Q Consensus       104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  172 (201)
                      .+...+..+...|   .+.+|+.+.+++++++|=+...+..+..++..+|+.-.+.....+....+..|
T Consensus       281 llgkva~~yle~g---~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleae  346 (361)
T COG3947         281 LLGKVARAYLEAG---KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAE  346 (361)
T ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH
Confidence            4455677778889   99999999999999999999999999999999999888877666666554444

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.73  E-value=0.23  Score=25.12  Aligned_cols=29  Identities=14%  Similarity=0.043  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKK   63 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   63 (201)
                      .++..+|.+....++|++|+..|.+++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46788999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.71  E-value=1  Score=36.53  Aligned_cols=113  Identities=16%  Similarity=-0.008  Sum_probs=80.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642         43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE  122 (201)
Q Consensus        43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~  122 (201)
                      -.+..|+.-.|-.-+..+++..|.+|......+.+....|.|+.|...+..+-..-.....+...+-.-....+   +++
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~---r~~  374 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA---RWR  374 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh---hHH
Confidence            34567888888888888999999999988889999999999999998886655444333445555556667888   999


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642        123 LAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      +|...-.-.+.-.-++++...--+-....+|-.+++
T Consensus       375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~  410 (831)
T PRK15180        375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS  410 (831)
T ss_pred             HHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence            999888877765545554443333333344444444

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.71  E-value=0.92  Score=32.88  Aligned_cols=62  Identities=15%  Similarity=0.082  Sum_probs=52.4

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ   68 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~   68 (201)
                      +..+.+.+..++++...+.-++.+|.+......+-.+++-.|++++|...++-+-...|++.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            45677888888999988888888898888888888888888999999888888888888763

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.57  E-value=0.26  Score=24.53  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHH--HHHHHcCCccc
Q psy12642        103 LLHQRYADILYTQGGLENIELAISH--YLMAINLNEKN  138 (201)
Q Consensus       103 ~~~~~la~~~~~~~~~~~~~~A~~~--~~~al~~~p~~  138 (201)
                      ..+..+|-.++..|   ++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~---ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKG---KYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhcccC
Confidence            46788899999999   99999999  54777766653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.55  E-value=1.8  Score=30.32  Aligned_cols=103  Identities=14%  Similarity=0.047  Sum_probs=75.5

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcc--c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCCH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDET--N--TAARKRKICILKAKNKIPEAIKELTEYLK-KFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~--~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      ..+.|+-..|+..|+.+-...|.  -  ..+...-+.++...|.|++...-.+.+-. .+|-...+...||..-++.|++
T Consensus       104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~  183 (221)
T COG4649         104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF  183 (221)
T ss_pred             HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence            45789999999999998765532  1  24556667788889999987766655332 3344456677799999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILY  113 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~  113 (201)
                      .+|...|.+... +...|......+++..
T Consensus       184 a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         184 AKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             HHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            999999998776 5556666666666654

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=93.51  E-value=2.5  Score=31.89  Aligned_cols=133  Identities=9%  Similarity=-0.009  Sum_probs=65.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHH---HHcCCH----HHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDET--NTAARKRKICIL---KAKNKI----PEAIKELTEYLKKFMTDQETWQELCD   76 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~a~~~---~~~~~~----~~A~~~~~~~~~~~p~~~~~~~~l~~   76 (201)
                      -+..+...++|++=...+++......+  .....+..+...   ......    ..-...++..++..|++..++..+|.
T Consensus         6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~   85 (277)
T PF13226_consen    6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM   85 (277)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence            355677788888888888777653322  111111122111   111111    13556677778888888888777776


Q ss_pred             HHHhcCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642         77 LYLSEGDYAKAVFCMEELFLH-HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      .+....=-       -+.-.. +.-....+...      ..   -.+.|...+.+++.++|....+...+..+....|.
T Consensus        86 ~~~~~Aw~-------~RG~~~A~~V~~~~W~~~------~~---~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge  148 (277)
T PF13226_consen   86 YWVHRAWD-------IRGSGYASTVTEAQWLGA------HQ---ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE  148 (277)
T ss_pred             HHHHHHHH-------HHccchhcccCHHHHHHH------HH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence            65432100       000000 00001111111      11   34566666666666666666666666655555553

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.50  E-value=0.54  Score=35.49  Aligned_cols=57  Identities=21%  Similarity=0.212  Sum_probs=49.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      ...+..|...|.+.+|+...+++++.+|-+...+..+-.++...|   +--.+++.|++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~g---D~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLG---DEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhc---cchhhhhHHHHH
Confidence            345677889999999999999999999999999999999999999   777777777664

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.44  E-value=2.8  Score=33.88  Aligned_cols=49  Identities=14%  Similarity=-0.012  Sum_probs=21.6

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642         47 KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELF   95 (201)
Q Consensus        47 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al   95 (201)
                      .|++..|-.+|+-.+..+|+++......-..+...++-+.|...|+.++
T Consensus       445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv  493 (660)
T COG5107         445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSV  493 (660)
T ss_pred             cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence            3444444444444444444444333333333344444444444444443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.39  E-value=0.29  Score=22.98  Aligned_cols=29  Identities=28%  Similarity=0.382  Sum_probs=17.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642         82 GDYAKAVFCMEELFLHHPHNHLLHQRYAD  110 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~~~~~~~~~~la~  110 (201)
                      |+.+.+...|++++...|.++..|..++.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            34556666666666666666666655544

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=93.39  E-value=2.1  Score=33.93  Aligned_cols=57  Identities=19%  Similarity=0.157  Sum_probs=41.6

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTA--ARKR--KICILKAKNKIPEAIKELTEYLKK   63 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~--~a~~~~~~~~~~~A~~~~~~~~~~   63 (201)
                      +..+++.++|..|.+.++.+...-|....  .+..  .|.-++..-++++|.+.++..+..
T Consensus       138 a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  138 AKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            45688899999999999999886333332  2333  345566788899999999987764

>KOG0985|consensus

Probab=92.94  E-value=6.7  Score=35.21  Aligned_cols=129  Identities=16%  Similarity=0.078  Sum_probs=84.2

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------------------
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-----------------------   64 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------   64 (201)
                      .+-.+.|...+|++-|-++     +++..+.....+....|.|++-++++.-+.+..                       
T Consensus      1112 kAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred             HHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHH
Confidence            4455667777888777654     556677777888888899998888877655432                       


Q ss_pred             -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642         65 -----MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        65 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                           |+... ....|.-++..|.|+.|.-.|.        +..-|..++.++...|   +|+.|+..-+++     ++.
T Consensus      1187 ~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~Lg---eyQ~AVD~aRKA-----ns~ 1249 (1666)
T KOG0985|consen 1187 EFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLG---EYQGAVDAARKA-----NST 1249 (1666)
T ss_pred             HHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHH---HHHHHHHHhhhc-----cch
Confidence                 11111 1234555666666666666554        3445778888889999   999998888776     445


Q ss_pred             HHHHHHHHHHHHhhhhhhh
Q psy12642        140 RALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       140 ~~~~~l~~~~~~~~~~~~a  158 (201)
                      +.|.....++...+.+.-|
T Consensus      1250 ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred             hHHHHHHHHHhchhhhhHH
Confidence            5565555555555544444

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.83  E-value=2.6  Score=31.22  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=11.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHh
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELF   95 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al   95 (201)
                      .+|.-|+..|++++|+..|+.+.
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~  205 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAA  205 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            34444444455555554444443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF12854 PPR_1: PPR repeat

Probab=92.70  E-value=0.47  Score=23.14  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=16.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642         67 DQETWQELCDLYLSEGDYAKAVFCMEE   93 (201)
Q Consensus        67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~   93 (201)
                      |...|..+-..|.+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            344555666666666666666666654

>KOG0546|consensus

Probab=92.60  E-value=0.17  Score=38.90  Aligned_cols=78  Identities=14%  Similarity=0.015  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC  149 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  149 (201)
                      ....++.+-++.+.+..|+..-..++..++....+++..+..+....   ++++|++.++.+....|++......+..+-
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~---~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~  353 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLK---NYDEALEDLKKAKQKAPNDKAIEEELENVR  353 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhh---chhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence            34446777788889999988888888888888889999999999999   999999999999999999876554444333


Q ss_pred             H
Q psy12642        150 H  150 (201)
Q Consensus       150 ~  150 (201)
                      .
T Consensus       354 ~  354 (372)
T KOG0546|consen  354 Q  354 (372)
T ss_pred             h
Confidence            3

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.54  E-value=6.8  Score=34.28  Aligned_cols=94  Identities=11%  Similarity=-0.009  Sum_probs=67.3

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcc--c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDET--N-------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-----QE   69 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~   69 (201)
                      |+++..+....++++|..++.++...-|.  .       ....-..+.+....|+++.|++..+.++..-|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            44666677788888888888877664332  1       1344455777778888888888888888877665     33


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      +...+|.+..-.|++++|..+..++.+.
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence            5556777888888888888888777765

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.53  E-value=1.2  Score=35.52  Aligned_cols=62  Identities=16%  Similarity=0.067  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-------H-hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYL-------K-KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      .....+..++..+|||..|++.++-.-       . ..+-....++..|-+|+.+++|.+|+..|...+.
T Consensus       123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566778888999999999886521       1 1222355788899999999999999999998773

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.16  E-value=2.5  Score=34.28  Aligned_cols=102  Identities=20%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      +.++|-++.|+.+-        +++...   -.+..+.|+.+.|.+...+     .+++..|..+|...+.+|+++-|..
T Consensus       305 L~~~G~~e~AL~~~--------~D~~~r---FeLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~  368 (443)
T PF04053_consen  305 LEKKGYPELALQFV--------TDPDHR---FELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEE  368 (443)
T ss_dssp             HHHTT-HHHHHHHS--------S-HHHH---HHHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHH
T ss_pred             HHHCCCHHHHHhhc--------CChHHH---hHHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            45567777666542        334444   3456789999999875543     4578899999999999999999999


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      +|+++-.        +..+..+|...|   +.+.-.+....+......+
T Consensus       369 c~~k~~d--------~~~L~lLy~~~g---~~~~L~kl~~~a~~~~~~n  406 (443)
T PF04053_consen  369 CYQKAKD--------FSGLLLLYSSTG---DREKLSKLAKIAEERGDIN  406 (443)
T ss_dssp             HHHHCT---------HHHHHHHHHHCT----HHHHHHHHHHHHHTT-HH
T ss_pred             HHHhhcC--------ccccHHHHHHhC---CHHHHHHHHHHHHHccCHH
Confidence            9987531        344444555566   6555555555555544433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2422|consensus

Probab=91.67  E-value=7  Score=32.58  Aligned_cols=130  Identities=16%  Similarity=0.027  Sum_probs=85.4

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhc-----C----------------cccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKI-----D----------------ETNT---AARKRKICILKAKNKIPEAIKELTEYLK   62 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~-----~----------------~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~   62 (201)
                      +..+..+|+.+.|-...++++=.     .                |.+-   -+++.....+-..|-+..|.++.+-.++
T Consensus       291 a~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls  370 (665)
T KOG2422|consen  291 ADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS  370 (665)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence            34456688888888777776532     1                2222   2233344455667999999999999999


Q ss_pred             hcCC-CHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         63 KFMT-DQETWQELCDLY-LSEGDYAKAVFCMEELFLH-----HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        63 ~~p~-~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      ++|. ||-+...+-.+| ++..+|+=-+..++..-..     .|+ ...-..++..+........-+.|...+.+|+...
T Consensus       371 Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~  449 (665)
T KOG2422|consen  371 LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHH  449 (665)
T ss_pred             cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence            9998 777666655554 4677888777777776333     343 3333445555555542223678899999999988


Q ss_pred             cc
Q psy12642        136 EK  137 (201)
Q Consensus       136 p~  137 (201)
                      |.
T Consensus       450 P~  451 (665)
T KOG2422|consen  450 PL  451 (665)
T ss_pred             cH
Confidence            84

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.67  E-value=2.3  Score=30.93  Aligned_cols=62  Identities=23%  Similarity=0.221  Sum_probs=54.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642         42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL  103 (201)
Q Consensus        42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  103 (201)
                      .-+...+...+++...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++..
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            34667789999999999999999999988888889999999999999999999999987543

>KOG0890|consensus

Probab=91.58  E-value=11  Score=36.67  Aligned_cols=146  Identities=14%  Similarity=0.061  Sum_probs=96.1

Q ss_pred             HHHhhhhccCHHHHHHHHHHHH-hcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          6 YIIGCFHFFRYEEALEHLETII-KIDET--NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l-~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      .+..=+..+.|.+|+-++++-. ...+.  ....+..+-.+|...++++.......... ..|+   + ...-..+...|
T Consensus      1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~s---l-~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADPS---L-YQQILEHEASG 1463 (2382)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCcc---H-HHHHHHHHhhc
Confidence            4455567889999999998841 11111  12334445558888898888766655411 2221   2 22334566789


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH-HHHHHhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA-LSCHQVLTSAKCS  159 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~a~  159 (201)
                      ++..|..+|+++++.+|+....+...-...+..+   .++..+-..+-.....++...-|..++ .+.-+.++++.-.
T Consensus      1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~---~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQ---HLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred             cHHHHHHHHHHhhcCCCccccchhhHHHhhhccc---chhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence            9999999999999999998877777777777778   888888888777766666555444433 2334555555553

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=91.47  E-value=2.8  Score=27.56  Aligned_cols=44  Identities=9%  Similarity=-0.009  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642         52 EAIKELTEYLK--KFMTDQETWQELCDLYLSEGDYAKAVFCMEELF   95 (201)
Q Consensus        52 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al   95 (201)
                      .+.++|.....  +.-..+..|...|..+...|++++|.++|+.+|
T Consensus        81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence            44444444443  233345555555566666666666666655543

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.32  E-value=2.5  Score=31.78  Aligned_cols=136  Identities=11%  Similarity=0.075  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH------HhcCCHHHH
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAK--NKIPEAIKELTEYLKKFMTDQETWQELCDLY------LSEGDYAKA   87 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~------~~~~~~~~A   87 (201)
                      .+.-+.++..+++.+|.+..+|..+-.++...  .++..-..+.++.++.+|.+.-+|...-.+.      ..-..+..-
T Consensus        90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e  169 (328)
T COG5536          90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE  169 (328)
T ss_pred             hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence            34456778889999999999998887777665  5677778888999999999877776533222      333344555


Q ss_pred             HHHHHHHhhcCCCCHHHHHHH---HHHHHHcCCc---ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         88 VFCMEELFLHHPHNHLLHQRY---ADILYTQGGL---ENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        88 ~~~~~~al~~~~~~~~~~~~l---a~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      .++-..+|..++.|..+|...   -...+..|+.   .-+++-+++.-.++-.+|++..+|..+-.+...
T Consensus       170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~  239 (328)
T COG5536         170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE  239 (328)
T ss_pred             HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence            666778888999999888776   3333344421   126677888888888999998888776665554

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.07  E-value=4.7  Score=29.86  Aligned_cols=80  Identities=15%  Similarity=0.028  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCC
Q psy12642         16 YEEALEHLETIIKIDE------TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLYLSEGD   83 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~   83 (201)
                      -...++.+.++.+.-.      ....+...+|..|+..|++++|+++++.+.......      ..+...+..|+...|+
T Consensus       154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~  233 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD  233 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            3345666666665432      223555678999999999999999999987654332      3455567788888999


Q ss_pred             HHHHHHHHHHHh
Q psy12642         84 YAKAVFCMEELF   95 (201)
Q Consensus        84 ~~~A~~~~~~al   95 (201)
                      .+..+.+.-+++
T Consensus       234 ~~~~l~~~leLl  245 (247)
T PF11817_consen  234 VEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHh
Confidence            888877665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0276|consensus

Probab=90.67  E-value=4.9  Score=33.71  Aligned_cols=66  Identities=17%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         22 HLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      +.+++++..++..    ..-.+..+.|+++.|..+..+     .++..-|..||.+....+++..|.++|.++-.
T Consensus       629 ~~e~AL~~s~D~d----~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  629 MKEQALELSTDPD----QRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             chHhhhhcCCChh----hhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            3444454444332    223345567777777654433     45667899999999999999999999988754

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.65  E-value=0.8  Score=23.96  Aligned_cols=25  Identities=12%  Similarity=-0.005  Sum_probs=16.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642         38 KRKICILKAKNKIPEAIKELTEYLK   62 (201)
Q Consensus        38 ~~~a~~~~~~~~~~~A~~~~~~~~~   62 (201)
                      +.++..|..+|+.+.|.+.+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3456666666666666666666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12854 PPR_1: PPR repeat

Probab=90.50  E-value=0.96  Score=22.02  Aligned_cols=27  Identities=15%  Similarity=0.111  Sum_probs=21.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTE   59 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~   59 (201)
                      +...+..+...+.+.|+.++|.+.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            456777788888899999999888765

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.41  E-value=0.85  Score=36.26  Aligned_cols=56  Identities=16%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFL--------HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      +.+++.-.|+|..|++.++..--        ..+-...+++.+|.+|..++   +|.+|++.|...+
T Consensus       128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlr---RY~DAir~f~~iL  191 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLR---RYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            45678889999999999875421        12234457899999999999   9999999999876

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=89.90  E-value=5.6  Score=31.31  Aligned_cols=44  Identities=27%  Similarity=0.137  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642         50 IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEE   93 (201)
Q Consensus        50 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   93 (201)
                      .-+|+.+++.++...|.+......+..+|...|-.+.|...|..
T Consensus       199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~  242 (365)
T PF09797_consen  199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            34566666777777777777777777777777777777776654

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.84  E-value=2.3  Score=28.55  Aligned_cols=54  Identities=13%  Similarity=-0.095  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642        102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      .......+...+..|   ++.-|......++..+|++..+....+.++.++|.....
T Consensus        70 ~d~vl~~A~~~~~~g---d~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~  123 (141)
T PF14863_consen   70 ADKVLERAQAALAAG---DYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN  123 (141)
T ss_dssp             HHHHHHHHHHHHHCT----HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            344455555566666   777777777777777777777777777777776655444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=89.79  E-value=4.2  Score=26.89  Aligned_cols=120  Identities=18%  Similarity=0.091  Sum_probs=71.8

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      .+.+.+.+...+.+++.++..++.++..+..+..+|... +..+.+..+..    .++..+ ....+.++.+.+-+++++
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd-~~~~~~~c~~~~l~~~~~   89 (140)
T smart00299       16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYD-IEKVGKLCEKAKLYEEAV   89 (140)
T ss_pred             HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCC-HHHHHHHHHHcCcHHHHH
Confidence            344567899999999999998888888888888888764 34555555552    111111 112344555666666666


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHH-HcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILY-TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                      ..+.+.    .....+.    .++. ..+   +++.|++++.+     ++++..|..++..+.
T Consensus        90 ~l~~k~----~~~~~Al----~~~l~~~~---d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       90 ELYKKD----GNFKDAI----VTLIEHLG---NYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             HHHHhh----cCHHHHH----HHHHHccc---CHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            666542    1211111    1122 226   78888888775     235666766665543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.50  E-value=10  Score=30.86  Aligned_cols=101  Identities=23%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNT-AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      .-.++++++....... +.-|.-+ .-....+..+...|-++.|+..        ..|+...+.|+   .+.|+.+.|.+
T Consensus       272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~--------~~D~~~rFeLA---l~lg~L~~A~~  339 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQF--------VTDPDHRFELA---LQLGNLDIALE  339 (443)
T ss_dssp             HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHH--------SS-HHHHHHHH---HHCT-HHHHHH
T ss_pred             HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhh--------cCChHHHhHHH---HhcCCHHHHHH
Confidence            4468899987776521 1223333 3344566667778888877643        34566666655   68999999987


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      ..+     ..+++..|..+|......|   +++-|.++|+++
T Consensus       340 ~a~-----~~~~~~~W~~Lg~~AL~~g---~~~lAe~c~~k~  373 (443)
T PF04053_consen  340 IAK-----ELDDPEKWKQLGDEALRQG---NIELAEECYQKA  373 (443)
T ss_dssp             HCC-----CCSTHHHHHHHHHHHHHTT---BHHHHHHHHHHC
T ss_pred             HHH-----hcCcHHHHHHHHHHHHHcC---CHHHHHHHHHhh
Confidence            653     4457889999999999999   999999999985

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.90  E-value=1.4  Score=23.11  Aligned_cols=23  Identities=22%  Similarity=0.112  Sum_probs=11.5

Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642        107 RYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus       107 ~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      .+|.+|..+|   +.+.|.+.++.++
T Consensus         4 dLA~ayie~G---d~e~Ar~lL~evl   26 (44)
T TIGR03504         4 DLARAYIEMG---DLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHcC---ChHHHHHHHHHHH
Confidence            3444555555   5555555555544

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=88.47  E-value=8.7  Score=28.75  Aligned_cols=25  Identities=12%  Similarity=-0.008  Sum_probs=12.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKEL   57 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~   57 (201)
                      ++..+..+|..+++.|++.+|..++
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3455555555555555555555444

; PDB: 3LKU_E 2WPV_G.

>KOG0128|consensus

Probab=88.47  E-value=16  Score=31.86  Aligned_cols=118  Identities=13%  Similarity=0.084  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--H-hcCCHHHHHHHHHH
Q psy12642         17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLY--L-SEGDYAKAVFCMEE   93 (201)
Q Consensus        17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~-~~~~~~~A~~~~~~   93 (201)
                      ++=+..++.-+..++.+...+..+..++...|++++....-.+...+.|.++..|.....-.  + ..++..++...|++
T Consensus        96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek  175 (881)
T KOG0128|consen   96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK  175 (881)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence            34456667777788888888899999999999999988888888889999999998765433  2 33677888888999


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHcCC----cccHHHHHHHHHHHHcCC
Q psy12642         94 LFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLMAINLN  135 (201)
Q Consensus        94 al~~~~~~~~~~~~la~~~~~~~~----~~~~~~A~~~~~~al~~~  135 (201)
                      ++. +-+++..|...+......++    .++++.....|.+++..-
T Consensus       176 al~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~  220 (881)
T KOG0128|consen  176 ALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL  220 (881)
T ss_pred             Hhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence            885 44446666666555443331    137888888888888654

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.30  E-value=6.8  Score=29.61  Aligned_cols=131  Identities=14%  Similarity=0.112  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CCHHH
Q psy12642         17 EEALEHLETIIKIDETNTAARKRKICILKA----K----NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE--GDYAK   86 (201)
Q Consensus        17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~   86 (201)
                      ..|++.-...+..+|....+|...-.+...    .    .-.+.-+..+..+++.+|.+..+|...-.+...-  .++..
T Consensus        49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r  128 (328)
T COG5536          49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR  128 (328)
T ss_pred             HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence            457777777788888888777776665544    1    1235567788889999999999888765554433  56888


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHH------HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADIL------YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                      -....++.+..+|.|.-+|...--+.      ..-.   .+....++-...+..++.|..+|........
T Consensus       129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S---~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~  195 (328)
T COG5536         129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFS---DLKHELEYTTSLIETDIYNNSAWHHRYIWIE  195 (328)
T ss_pred             hHHHHHHHhcccccccceeeeEeeeeecchhhccch---hHHHHHHhHHHHHhhCCCChHHHHHHHHHHH
Confidence            88888999999999877665443332      2223   5666678888899999999999988744333

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=88.27  E-value=17  Score=31.95  Aligned_cols=149  Identities=13%  Similarity=0.052  Sum_probs=102.6

Q ss_pred             HHhhhhccCHHHHHHHHHHH---Hhc-------------Cc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy12642          7 IIGCFHFFRYEEALEHLETI---IKI-------------DE-----TNTAARKRKICILKAKNKIPEAIKELTEYLKKFM   65 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~---l~~-------------~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p   65 (201)
                      |......|+++.|...+++.   +-.             -|     ++|......+.......++.+|..++.++-..-|
T Consensus       367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~  446 (894)
T COG2909         367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK  446 (894)
T ss_pred             HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC
Confidence            34445667888887777776   111             12     2345555667777888999999999888766443


Q ss_pred             C--C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         66 T--D-------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH-----LLHQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        66 ~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      .  .       ....-..|.+....|++++|.+..+.++..-|.+.     .+...+|.+....|   +++.|..+...+
T Consensus       447 ~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G---~~~~Al~~~~~a  523 (894)
T COG2909         447 APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRG---ELTQALALMQQA  523 (894)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhc---hHHHHHHHHHHH
Confidence            3  1       22333457788899999999999999998877653     46778899999999   999999999988


Q ss_pred             HcCCc----ccH--HHHHHHHHHHHHhhhhhhh
Q psy12642        132 INLNE----KNI--RALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       132 l~~~p----~~~--~~~~~l~~~~~~~~~~~~a  158 (201)
                      .+...    ...  .+....+.+....|+...+
T Consensus       524 ~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a  556 (894)
T COG2909         524 EQMARQHDVYHLALWSLLQQSEILEAQGQVARA  556 (894)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            77632    222  2334456666777744333

>KOG3807|consensus

Probab=88.21  E-value=11  Score=29.47  Aligned_cols=29  Identities=14%  Similarity=0.021  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642        105 HQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus       105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                      ...++.|..+.|   +..+|++.++...+-.|
T Consensus       278 KRRLAMCARklG---rlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  278 KRRLAMCARKLG---RLREAVKIMRDLMKEFP  306 (556)
T ss_pred             HHHHHHHHHHhh---hHHHHHHHHHHHhhhcc
Confidence            356777777777   78888887777666555

>KOG1538|consensus

Probab=88.14  E-value=3.8  Score=34.72  Aligned_cols=113  Identities=15%  Similarity=0.015  Sum_probs=62.1

Q ss_pred             HHHHhhhhccCHHHHHHHH----------HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHL----------ETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL   74 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~----------~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   74 (201)
                      +.+..+...|+.++|+.+.          +-..+.+..+...+...+..+.....+.-|.++|.+.-.        ...+
T Consensus       708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksi  779 (1081)
T KOG1538|consen  708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSL  779 (1081)
T ss_pred             HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHH
Confidence            4455666777777777643          111222333333444444444444444444444443211        1123


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      .+.+...++|++|....++.=+.-   +.+++..|+.+....   ++++|.+.|-++
T Consensus       780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~D---rFeEAqkAfhkA  830 (1081)
T KOG1538|consen  780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAEND---RFEEAQKAFHKA  830 (1081)
T ss_pred             hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhh---hHHHHHHHHHHh
Confidence            456667788888877666533333   336677777777777   777777777665

>KOG2581|consensus

Probab=88.08  E-value=12  Score=29.92  Aligned_cols=95  Identities=11%  Similarity=0.029  Sum_probs=64.9

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCC--HHHHHHHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLK--KFMTD--QETWQELCDL   77 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~--~~~~~~l~~~   77 (201)
                      ..+...|+...-..++...+...      ..-......+-..|...+.++.|.....+..-  ...++  ....+.+|.+
T Consensus       177 l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI  256 (493)
T KOG2581|consen  177 LSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI  256 (493)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH
Confidence            44555666555555555554421      12234455666778888999999888776542  11122  4566778999


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCH
Q psy12642         78 YLSEGDYAKAVFCMEELFLHHPHNH  102 (201)
Q Consensus        78 ~~~~~~~~~A~~~~~~al~~~~~~~  102 (201)
                      ..-+++|..|.++|-+++...|.+.
T Consensus       257 kaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  257 KAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHhhcchhHHHHHHHHHHHhCcchh
Confidence            9999999999999999999999743

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.02  E-value=6  Score=26.44  Aligned_cols=119  Identities=13%  Similarity=0.057  Sum_probs=67.0

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccH------------------HHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcCCCH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNT------------------AARKRKICILK--AKNKIPEAIKELTEYLKKFMTDQ   68 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~------------------~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~p~~~   68 (201)
                      .+.-.|..++..+...+.....+-..                  .++-.+|.++-  ..|+....+.++-..   + .+.
T Consensus        11 ~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~---n-~~s   86 (161)
T PF09205_consen   11 ERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR---N-KLS   86 (161)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT---T----
T ss_pred             HHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh---c-chH
Confidence            34556888888888888776554322                  11222233221  235566555555431   1 122


Q ss_pred             HHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         69 ETWQELC-DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        69 ~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      + +..++ .+...+|+-++--+.++...+.+..+|..+..+|.+|.+.|   +..++-+.+.+|.+..
T Consensus        87 e-~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg---~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   87 E-YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLG---NTREANELLKEACEKG  150 (161)
T ss_dssp             H-HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT
T ss_pred             H-HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhc---chhhHHHHHHHHHHhc
Confidence            2 22333 44557777777777777777666777889999999999999   9999999999888764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I

Probab=87.77  E-value=8.2  Score=27.62  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=30.6

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKIC-ILKAKNKIPEAIKELTEYLKK   63 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~   63 (201)
                      .+...|+++.|-..|--++...+-+....-.+|. ++...+.-....++++.....
T Consensus        50 ~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~  105 (199)
T PF04090_consen   50 LCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISF  105 (199)
T ss_pred             HHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHH
Confidence            3455678888888887777766555544444433 444444444433444444433

Binding to the DNA template is dependent on the initial binding of other factors [].

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.57  E-value=3.6  Score=27.63  Aligned_cols=51  Identities=27%  Similarity=0.301  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        66 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      ...+.....+.-.+..|++.-|....+.++..+|+|..+....+.++...+
T Consensus        68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            345566677888889999999999999999999999999999999888877

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.54  E-value=3  Score=24.66  Aligned_cols=17  Identities=18%  Similarity=0.165  Sum_probs=7.4

Q ss_pred             HHhcCCHHHHHHHHHHH
Q psy12642         78 YLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        78 ~~~~~~~~~A~~~~~~a   94 (201)
                      +-..|++++|+.+|+++
T Consensus        16 ~D~~gr~~eAi~~Y~~a   32 (75)
T cd02682          16 AEKEGNAEDAITNYKKA   32 (75)
T ss_pred             HHhcCCHHHHHHHHHHH
Confidence            33444444444444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF13041 PPR_2: PPR repeat family

Probab=87.17  E-value=3  Score=22.02  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=10.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELF   95 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al   95 (201)
                      |..+-..|.+.|++++|.+.|++..
T Consensus         6 yn~li~~~~~~~~~~~a~~l~~~M~   30 (50)
T PF13041_consen    6 YNTLISGYCKAGKFEEALKLFKEMK   30 (50)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3333344444444444444444444

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=86.46  E-value=1.7  Score=19.97  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=12.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELF   95 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al   95 (201)
                      ..+-..|.+.|++++|...|++..
T Consensus         4 ~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    4 NSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHh
Confidence            334445555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1463|consensus

Probab=86.04  E-value=15  Score=28.77  Aligned_cols=158  Identities=18%  Similarity=0.057  Sum_probs=97.0

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCHH--HHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-----MTDQE--TWQ   72 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~--~~~   72 (201)
                      .+..|++.++|.+|+......+..-      +.-..++..-..+|+...+..+|...+..+....     |.-..  .=.
T Consensus       134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL  213 (411)
T KOG1463|consen  134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL  213 (411)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence            3455788899999998877776532      2334566666778888888888877776655422     11111  112


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCC---CCHHHHH---HHHHHHHHcCCcccHH--HHHHHHHHHHcCCcccHHHHHH
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHP---HNHLLHQ---RYADILYTQGGLENIE--LAISHYLMAINLNEKNIRALYG  144 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~---~la~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~  144 (201)
                      .-|.++....+|.-|..+|-++++-..   +++.+..   ++-.+-...+   ..+  .++-.-+.+++....+..+...
T Consensus       214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln---~~ddv~~lls~K~~l~y~g~~i~Amka  290 (411)
T KOG1463|consen  214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLN---LPDDVAALLSAKLALKYAGRDIDAMKA  290 (411)
T ss_pred             hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhc---CHHHHHHHHhhHHHHhccCcchHHHHH
Confidence            236667777889999999988886432   2233322   2222223334   333  3444445566666677888888


Q ss_pred             HHHHHHH--hhhhhhhhhhhHHHH
Q psy12642        145 LALSCHQ--VLTSAKCSAAKKKEI  166 (201)
Q Consensus       145 l~~~~~~--~~~~~~a~~~~~~~~  166 (201)
                      ++.++.+  +.++.+|..+.+.+.
T Consensus       291 vAeA~~nRSLkdF~~AL~~yk~eL  314 (411)
T KOG1463|consen  291 VAEAFGNRSLKDFEKALADYKKEL  314 (411)
T ss_pred             HHHHhcCCcHHHHHHHHHHhHHHH
Confidence            8888764  667777776665553

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=85.58  E-value=16  Score=28.79  Aligned_cols=44  Identities=25%  Similarity=0.313  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM  130 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  130 (201)
                      .-+|+..++.++..+|.|......+..+|...|   -.+.|...|..
T Consensus       199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG---~~~~A~~~~~~  242 (365)
T PF09797_consen  199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG---AGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHh
Confidence            456777778888888888888888888888888   77777777754

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=85.16  E-value=1.2  Score=32.47  Aligned_cols=19  Identities=32%  Similarity=0.459  Sum_probs=15.3

Q ss_pred             cHHHHHHHHHHHHcCCccc
Q psy12642        120 NIELAISHYLMAINLNEKN  138 (201)
Q Consensus       120 ~~~~A~~~~~~al~~~p~~  138 (201)
                      +...|+.++++|++++|+.
T Consensus       193 ~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        193 TLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             cHHHHHHHHHHHHHhCCCC
Confidence            7788888888888888763

>PF13041 PPR_2: PPR repeat family

Probab=85.11  E-value=4  Score=21.52  Aligned_cols=30  Identities=23%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKK   63 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   63 (201)
                      ...|..+...+.+.|++++|.+.|++..+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            345666667777777777777777776664

>KOG1839|consensus

Probab=84.75  E-value=11  Score=34.54  Aligned_cols=125  Identities=15%  Similarity=0.085  Sum_probs=89.8

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKID--------ETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------FMTDQET   70 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~   70 (201)
                      +.-+...+++++|+..-.++.-..        |+....+..++...+..++...|...+.++...        .|.....
T Consensus       980 a~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~ 1059 (1236)
T KOG1839|consen  980 AKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS 1059 (1236)
T ss_pred             HHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhh
Confidence            344667889999998777665432        555677778888888888888999988887763        3444556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCC--------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELFLHHP--------HNHLLHQRYADILYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                      ...++.++...++++.|+.+.+.|+....        .+...+..+++....++   ++..|+.+.+....+
T Consensus      1060 ~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~---dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1060 FINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMK---DFRNALEHEKVTYGI 1128 (1236)
T ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhH---HHHHHHHHHhhHHHH
Confidence            67788888889999999999999997532        22345566677666666   676666666655443

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=84.65  E-value=5.6  Score=28.12  Aligned_cols=47  Identities=28%  Similarity=0.179  Sum_probs=29.3

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      .+...++.+...|+ +..+..++.++...|   +.++|.....++....|.
T Consensus       130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G---~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  130 YIEWAERLLRRRPD-PNVYQRYALALALLG---DPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHhCCC-HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCc
Confidence            33444555555554 666666666666666   667777777777666663

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG2041|consensus

Probab=84.63  E-value=26  Score=30.40  Aligned_cols=59  Identities=19%  Similarity=0.102  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH----------------------HHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTE----------------------YLKKFMTDQETWQELCDLYLSEGDYAKAVFCME   92 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~----------------------~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   92 (201)
                      .++..+|..+..+..+++|.++|..                      +...-|++.+....+|..+...|--++|+++|-
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence            6677777777777777777777654                      223458888888888888888888888887765


Q ss_pred             H
Q psy12642         93 E   93 (201)
Q Consensus        93 ~   93 (201)
                      +
T Consensus       877 r  877 (1189)
T KOG2041|consen  877 R  877 (1189)
T ss_pred             h
Confidence            4

>KOG3783|consensus

Probab=84.60  E-value=14  Score=30.49  Aligned_cols=91  Identities=18%  Similarity=0.057  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642         17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDLYLSEGDYAKAVFCME   92 (201)
Q Consensus        17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~   92 (201)
                      ..+.+.+.......|.++......+..+...|+.+.|+..++..+.  +.-    .-.++.+|.++..+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4555666666667788888888888888888887778888877766  221    2355667888888888999998888


Q ss_pred             HHhhcCCCCHHHHHHHH
Q psy12642         93 ELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        93 ~al~~~~~~~~~~~~la  109 (201)
                      .....+.-+.-.+..++
T Consensus       328 ~L~desdWS~a~Y~Yfa  344 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFA  344 (546)
T ss_pred             HHHhhhhhhHHHHHHHH
Confidence            88777665555555554

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=84.47  E-value=11  Score=31.58  Aligned_cols=81  Identities=12%  Similarity=0.081  Sum_probs=63.1

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      +-+....+.+....+.-+.-...........+..+...|..++|-.+|++.+..+|+  +.+...+.-+.+.|-...|..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   95 (578)
T PRK15490         18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL   95 (578)
T ss_pred             HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence            344556666666666665555556666777788888889999999999999999988  567778888888998888888


Q ss_pred             HHH
Q psy12642         90 CME   92 (201)
Q Consensus        90 ~~~   92 (201)
                      .+.
T Consensus        96 ~~~   98 (578)
T PRK15490         96 ILK   98 (578)
T ss_pred             HHH
Confidence            877

>KOG3783|consensus

Probab=84.40  E-value=22  Score=29.46  Aligned_cols=91  Identities=13%  Similarity=0.001  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCCcccHHHHHH
Q psy12642         51 PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH----NHLLHQRYADILYTQGGLENIELAIS  126 (201)
Q Consensus        51 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~~~~A~~  126 (201)
                      +...+.+.......|+++-.....+..+...|+-+.|+..++..+.  +.    .....+.+|.++....   +|..|..
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~---~~~~aad  324 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQH---QYSRAAD  324 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHH---HHHHHhh
Confidence            4555666666778898887777788888888998888888888876  22    1234667788888888   9999999


Q ss_pred             HHHHHHcCCcccHHHHHHHH
Q psy12642        127 HYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus       127 ~~~~al~~~p~~~~~~~~l~  146 (201)
                      .+......+.-....+..++
T Consensus       325 ~~~~L~desdWS~a~Y~Yfa  344 (546)
T KOG3783|consen  325 SFDLLRDESDWSHAFYTYFA  344 (546)
T ss_pred             HHHHHHhhhhhhHHHHHHHH
Confidence            99998888776666666666

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=84.31  E-value=5.6  Score=28.09  Aligned_cols=38  Identities=11%  Similarity=-0.018  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642        121 IELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus       121 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      .+..++..++.++..|+ +..+..++.++...|+.++|.
T Consensus       127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~  164 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEAR  164 (193)
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHH
Confidence            33444444555555554 445555555555555555553

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=83.75  E-value=16  Score=27.34  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12642         67 DQETWQELCDLYLSEGDYAKAVFCM   91 (201)
Q Consensus        67 ~~~~~~~l~~~~~~~~~~~~A~~~~   91 (201)
                      ++..+..+|..+++.|++.+|..+|
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3556666666666666666666555

; PDB: 3LKU_E 2WPV_G.

>KOG3616|consensus

Probab=83.67  E-value=30  Score=30.33  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=22.7

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642         46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEE   93 (201)
Q Consensus        46 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~   93 (201)
                      ...++.+|+.++........ ....|-..+.-|...|+|+-|.+.|.+
T Consensus       744 ~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e  790 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTE  790 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHh
Confidence            34445555544443332211 122344455566666666666665544

>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.59  E-value=8.7  Score=24.16  Aligned_cols=33  Identities=12%  Similarity=0.063  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD   67 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~   67 (201)
                      ..+..+|.+|...|+.+.+...|+.--.++|++
T Consensus        73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES  105 (121)
T COG4259          73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPES  105 (121)
T ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence            334444444444444444444444444444444

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.45  E-value=27  Score=29.72  Aligned_cols=118  Identities=18%  Similarity=0.060  Sum_probs=77.8

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcc--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHH-HH-H-HHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDET--NT----AARKRKICILKAKNKIPEAIKELTEYLKKFMT---DQETW-QE-L-CDL   77 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~-~~-l-~~~   77 (201)
                      +....+++.|..++.+++.....  ..    .+...++.++...+... |...+++.++...+   ....| +. + ...
T Consensus        70 ~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l  148 (608)
T PF10345_consen   70 LEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQL  148 (608)
T ss_pred             HHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            34678999999999999876633  22    33446678888877766 99999998886544   22222 22 2 233


Q ss_pred             HHhcCCHHHHHHHHHHHhhcC--CCCHHHH----HHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         78 YLSEGDYAKAVFCMEELFLHH--PHNHLLH----QRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        78 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~----~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      ....+++..|+..++.+....  +.++.+.    ...+.++...+   ..+++++..+++
T Consensus       149 ~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~---~~~d~~~~l~~~  205 (608)
T PF10345_consen  149 ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG---SPDDVLELLQRA  205 (608)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC---CchhHHHHHHHH
Confidence            333489999999999998765  3555432    22345555556   566677777666

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0686|consensus

Probab=83.30  E-value=19  Score=28.81  Aligned_cols=95  Identities=8%  Similarity=-0.066  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--------CCHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMT---DQETWQELCDLYLSEGDYAKAVFCMEELFLHHP--------HNHL  103 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~  103 (201)
                      .++..+|.-|...|+.+.|++.|.++...-..   ....|..+-.+-...|+|..-..+..++...-.        -.+.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            56777888899999999999999985553222   245666666777788999888888877765410        1123


Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642        104 LHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus       104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      +...-|.+....+   .|..|.++|-.+.
T Consensus       231 l~C~agLa~L~lk---kyk~aa~~fL~~~  256 (466)
T KOG0686|consen  231 LKCAAGLANLLLK---KYKSAAKYFLLAE  256 (466)
T ss_pred             hHHHHHHHHHHHH---HHHHHHHHHHhCC
Confidence            4556677777788   8999999888764

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=83.21  E-value=14  Score=28.79  Aligned_cols=131  Identities=15%  Similarity=0.066  Sum_probs=85.7

Q ss_pred             hccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642         12 HFFRYEEALEHLETIIKID-ETNTAARKRKICILKA-----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      +.+-.+++...+++++... |.-....-.++.++-.     .-+|..-...|.......|+ |.+-.+.+.......-.+
T Consensus       268 ~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~  346 (415)
T COG4941         268 DRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPA  346 (415)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHH
Confidence            3456778888888888865 3333333334444433     24566666666666666664 444445555555555566


Q ss_pred             HHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642         86 KAVFCMEELFLH--HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus        86 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  146 (201)
                      .++...+.+...  -.+...++...|..+...|   +.++|...|++++.+.++.....+...
T Consensus       347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLg---r~~eAr~aydrAi~La~~~aer~~l~~  406 (415)
T COG4941         347 AGLAMVEALLARPRLDGYHLYHAARADLLARLG---RVEEARAAYDRAIALARNAAERAFLRQ  406 (415)
T ss_pred             hHHHHHHHhhcccccccccccHHHHHHHHHHhC---ChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            777777666544  2344567788899999999   999999999999999888666544433

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.11  E-value=7.4  Score=23.01  Aligned_cols=19  Identities=16%  Similarity=0.272  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHhhcCCCCHH
Q psy12642         85 AKAVFCMEELFLHHPHNHL  103 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~  103 (201)
                      .+|++.+.+++...|+++.
T Consensus        30 ~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682          30 KKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHhCCChHH
Confidence            3344444444444444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A

Probab=83.03  E-value=3.8  Score=20.23  Aligned_cols=34  Identities=15%  Similarity=-0.048  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642        103 LLHQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus       103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                      ...+++|.++.......+..+++..++..++..|
T Consensus         2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~p   35 (35)
T PF14852_consen    2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRDEP   35 (35)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS-
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence            4567777777777766667777777777766544

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=83.00  E-value=19  Score=29.11  Aligned_cols=89  Identities=16%  Similarity=0.125  Sum_probs=60.5

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcCC
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLK--KFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ......+.+++...+.+........   +.........+...|..+.++.++..-+.  ++|++..+. .+-..+.+.|+
T Consensus        75 ~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n-~Lmd~fl~~~~  153 (429)
T PF10037_consen   75 NVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN-LLMDHFLKKGN  153 (429)
T ss_pred             hcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH-HHHHHHhhccc
Confidence            3444555666777776654432111   23344667778899999999999887666  567765544 45578889999


Q ss_pred             HHHHHHHHHHHhhcC
Q psy12642         84 YAKAVFCMEELFLHH   98 (201)
Q Consensus        84 ~~~A~~~~~~al~~~   98 (201)
                      |..|..+.......+
T Consensus       154 ~~~A~~V~~~~~lQe  168 (429)
T PF10037_consen  154 YKSAAKVATEMMLQE  168 (429)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999988776543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG0686|consensus

Probab=82.96  E-value=9.1  Score=30.54  Aligned_cols=91  Identities=7%  Similarity=-0.168  Sum_probs=63.8

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------CHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDET---NTAARKRKICILKAKNKIPEAIKELTEYLKKFMT--------DQETWQEL   74 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~l   74 (201)
                      ++..|...|+++.|+..|-++-....+   ....+.....+....|+|........++.+.-..        .+.+...-
T Consensus       156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~a  235 (466)
T KOG0686|consen  156 LGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAA  235 (466)
T ss_pred             HHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHH
Confidence            344577799999999999996654432   3355667777888889998888887777654100        12234445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhh
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      |.+.+..++|..|.++|-.+..
T Consensus       236 gLa~L~lkkyk~aa~~fL~~~~  257 (466)
T KOG0686|consen  236 GLANLLLKKYKSAAKYFLLAEF  257 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC
Confidence            6667777899999999877653

>TIGR02710 CRISPR-associated protein, TIGR02710 family

Probab=82.84  E-value=22  Score=28.28  Aligned_cols=54  Identities=20%  Similarity=0.206  Sum_probs=40.2

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCccc-----HHHHHH--HHHHHHHcCCHHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETN-----TAARKR--KICILKAKNKIPEAIKELTE   59 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~--~a~~~~~~~~~~~A~~~~~~   59 (201)
                      .+..++..++|..|...|++++...++.     ...+..  .|..++..-++++|.+.+++
T Consensus       136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~  196 (380)
T TIGR02710       136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND  196 (380)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence            4567889999999999999999876421     223333  34456677889999999985

Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=82.40  E-value=3.8  Score=19.13  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=15.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      |..+-..|.+.|++++|...|.+...
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34445556666666666666665543

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0546|consensus

Probab=82.38  E-value=1.5  Score=34.02  Aligned_cols=106  Identities=13%  Similarity=0.114  Sum_probs=80.6

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCc-----------c--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDE-----------T--------NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE   69 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~   69 (201)
                      ..++.+++++|..-|.+++..-.           +        -......++.+-+..+.+..|+..-..++..++....
T Consensus       231 ~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tk  310 (372)
T KOG0546|consen  231 KEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTK  310 (372)
T ss_pred             hhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCc
Confidence            36778888888888888776321           1        0022334566667778888888877777777888888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      +++..+..+....++++|+..++.+....|++......+..+-..
T Consensus       311 a~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  311 AHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             HHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            999999999999999999999999999999998776666554433

>KOG4151|consensus

Probab=81.69  E-value=10  Score=32.72  Aligned_cols=115  Identities=15%  Similarity=0.070  Sum_probs=80.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         41 ICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDLYL--SEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        41 a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      +...+..+++..+..-|..++.+-|.+    .......+.++.  ..|+|.+++.-.+-++...|.-..+++..+.+|..
T Consensus        60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a  139 (748)
T KOG4151|consen   60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA  139 (748)
T ss_pred             hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence            445566667777766677777766643    233334444544  56788888888888888888888888888888888


Q ss_pred             cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642        115 QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      .+   ..+-|++...-.....|.++.+..-....+.-....+.+
T Consensus       140 l~---k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~~  180 (748)
T KOG4151|consen  140 LN---KLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDLA  180 (748)
T ss_pred             HH---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCCc
Confidence            88   888888888878888888866555445544444444444

>KOG2422|consensus

Probab=81.67  E-value=31  Score=29.07  Aligned_cols=117  Identities=13%  Similarity=0.057  Sum_probs=84.9

Q ss_pred             hccCHHHHHHHHHHHHhc------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hc----------
Q psy12642         12 HFFRYEEALEHLETIIKI------------DETNTAARKRKICILKAKNKIPEAIKELTEYLK-----KF----------   64 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~----------   64 (201)
                      ....|++|...|.-+...            .|.+...+..++.+...+|+.+.|...+++++=     ..          
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            345677777777666554            377789999999999999999999988888763     11          


Q ss_pred             ------CCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH-HcCCcccHHHHHHHHHHH
Q psy12642         65 ------MTDQETWQE---LCDLYLSEGDYAKAVFCMEELFLHHPH-NHLLHQRYADILY-TQGGLENIELAISHYLMA  131 (201)
Q Consensus        65 ------p~~~~~~~~---l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~-~~~~~~~~~~A~~~~~~a  131 (201)
                            |.+-.++..   .-....+.|-+..|.++.+-.+.++|. ||.+...+-.+|. ...   +|+--++.++..
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar---eYqwiI~~~~~~  404 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR---EYQWIIELSNEP  404 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH---hHHHHHHHHHHH
Confidence                  222222222   224455789999999999999999998 8888777777665 444   777777777765

>KOG4014|consensus

Probab=80.13  E-value=19  Score=25.66  Aligned_cols=132  Identities=11%  Similarity=0.024  Sum_probs=87.4

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----C
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKA-----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-----G   82 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----~   82 (201)
                      +.+|++|...|+.--+.+. .+..-+.+|..++.     .++...|++.+..+-.  .+++.+...+|.++..-     +
T Consensus        48 ~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~  124 (248)
T KOG4014|consen   48 QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA  124 (248)
T ss_pred             HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence            4577888887777655443 34444455554432     3568888888887665  56788888888877632     2


Q ss_pred             C--HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-----------CCc----------ccHHHHHHHHHHHHcCCcccH
Q psy12642         83 D--YAKAVFCMEELFLHHPHNHLLHQRYADILYTQ-----------GGL----------ENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        83 ~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------~~~----------~~~~~A~~~~~~al~~~p~~~  139 (201)
                      +  .++|..++.++-.+.  +..+.+.+...+...           |.+          .+.+.|.++--++.++  +++
T Consensus       125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~  200 (248)
T KOG4014|consen  125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIP  200 (248)
T ss_pred             CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CCh
Confidence            3  688999999886544  555666666655543           111          3677788887777776  456


Q ss_pred             HHHHHHHHHHHH
Q psy12642        140 RALYGLALSCHQ  151 (201)
Q Consensus       140 ~~~~~l~~~~~~  151 (201)
                      .+-.++++.|..
T Consensus       201 ~aCAN~SrMykl  212 (248)
T KOG4014|consen  201 QACANVSRMYKL  212 (248)
T ss_pred             HHHhhHHHHHHc
Confidence            777888888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-04

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 18/150 (12%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKIC----------------ILKAKNKIPEAIKELT 58
           +  +A+ +    I ++   T                          K      +A     
Sbjct: 19  QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78

Query: 59  EYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118
           E L+K   + +  +   ++ +  G    A+   E++      N   +    +  Y     
Sbjct: 79  ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA-- 136

Query: 119 ENIELAISHYLMAINLNEKNIRALYGLALS 148
           E  +  +      ++   K   A Y   LS
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLS 166

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 6/143 (4%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            Y++A +  +   ++D  N     +  C+   +NK  +     +E  +KF    E     
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG------LENIELAISHY 128
            ++   + D+ KA+   +           ++   A ++           +EN   A +  
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438

Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
             A  L+ ++ +A  GLA    Q
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQ 461

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
              E   + +  +K+D  N++    +  +        +A K+  +  +    +   + +L
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
             L   E  +        E     P    +   +A+IL  +    + + A+  Y +AI L
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN---DFDKALKQYDLAIEL 401

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165
             K      G+A    +     +    +   
Sbjct: 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 4/132 (3%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
           +EE L+      K+ E    + +        KN    A +++ + ++ F     ++  + 
Sbjct: 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMA 277

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
            +     D  +     ++      +N  ++     + +      N + A   +  A  L+
Sbjct: 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ---NYDQAGKDFDKAKELD 334

Query: 136 EKNIRALYGLAL 147
            +NI     LA 
Sbjct: 335 PENIFPYIQLAC 346

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 17/142 (11%), Positives = 43/142 (30%), Gaps = 12/142 (8%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW--- 71
           ++++         +              IL  KN   +A+K+    ++        +   
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412

Query: 72  ------QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI 125
                   L     +  ++ +A   +E+     P +       A +   Q    +I+ AI
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE---DIDEAI 469

Query: 126 SHYLMAINLNEKNIRALYGLAL 147
           + +  + +L       L  +  
Sbjct: 470 TLFEESADLARTMEEKLQAITF 491

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 16/141 (11%), Positives = 45/141 (31%), Gaps = 1/141 (0%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           +Y++A+++    +++ E          C   +   + + ++  T+ L+      +     
Sbjct: 21  KYDDAIKYYNWALELKEDPVFYSNLSAC-YVSVGDLKKVVEMSTKALELKPDYSKVLLRR 79

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                  G +A A+F +  L L+   N    +   +    +  +  ++        A   
Sbjct: 80  ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139

Query: 135 NEKNIRALYGLALSCHQVLTS 155
             +             + L S
Sbjct: 140 PTELSTQPAKERKDKQENLPS 160

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 16/147 (10%)

Query: 14  FRYEEALEHLETIIKIDETNTAA------------RKRKICILKAKNKIPEAIKELTEYL 61
           F+ E    + +   + D+                  K      KA     E + +  E  
Sbjct: 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230

Query: 62  KKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI 121
           K       + +        + D   A   +++     P  +      A I+  +    + 
Sbjct: 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM-ALIMADRN---DS 286

Query: 122 ELAISHYLMAINLNEKNIRALYGLALS 148
               +++  A+ L+  N    Y     
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQM 313

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 13/145 (8%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELT----------EYLKKF 64
             ++ +E     +++    +    R+    +   K  +A+ +L+            ++  
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113

Query: 65  MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR---YADILYTQGGLENI 121
           +      Q +  L    GD   A     EL           Q        + +  G+   
Sbjct: 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173

Query: 122 ELAISHYLMAINLNEKNIRALYGLA 146
           EL  ++Y  +   +++ +  L  L 
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLY 198

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 18/148 (12%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           + + AL  L  +I++    TAAR ++  +L  + K+ EA  +  + LK   ++ E  +  
Sbjct: 75  KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134

Query: 75  CDL---------------YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
             L                   GDY  A+  ++++      +  L +  A+    +G   
Sbjct: 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG--- 191

Query: 120 NIELAISHYLMAINLNEKNIRALYGLAL 147
               AIS    A  L   N  A Y ++ 
Sbjct: 192 EPRKAISDLKAASKLKNDNTEAFYKIST 219

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 19/171 (11%)

Query: 15  RYEEALEHLETIIKIDETNTAAR------------KRKICILKAKNKIPEAIKELTEYLK 62
            +E +L  +   +K+D+ +                      L    +  +A  +    +K
Sbjct: 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285

Query: 63  KFMTDQETWQEL----CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118
              +  E         C  +  +    +A+    E+    P N    +  A+        
Sbjct: 286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL---IE 342

Query: 119 ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ 169
           E  + AI  Y  A   NE + +   GL  +   +  S K    K   + + 
Sbjct: 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 18/166 (10%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKA---------------KNKIPEAIKELTE 59
           + +EA +  + ++K + +    ++ +  ++K+                     AI  L +
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168

Query: 60  YLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
            L+  + D E  +   + ++ EG+  KA+  ++        N     + + + Y  G   
Sbjct: 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG--- 225

Query: 120 NIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165
           + EL++S     + L++ + R                      +  
Sbjct: 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG 271

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 10/143 (6%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKIC----ILKAKNKIPEAIKELTEYLKKFMTDQET 70
           RY +A    E+++K + +      R             K  EAI+  +E L+    +   
Sbjct: 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331

Query: 71  WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130
            ++  + YL E  Y +A+   E    H+ ++  + +        Q  L+  +    + ++
Sbjct: 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA---QRLLKQSQKRDYYKIL 388

Query: 131 AINLNEKN---IRALYGLALSCH 150
            +  N K    I+A   LAL  H
Sbjct: 389 GVKRNAKKQEIIKAYRKLALQWH 411

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 9/140 (6%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            Y  A+  L+ I+++   +   R+ +      + +  +AI +L    K    + E + ++
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHP-----HNHLLHQRYADILYTQG----GLENIELAI 125
             LY   GD+  ++  + E             H    +  + L               A 
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277

Query: 126 SHYLMAINLNEKNIRALYGL 145
           S Y   +             
Sbjct: 278 SKYESVMKTEPSIAEYTVRS 297

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 12/144 (8%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           +  +AL      +  D  N  A  R+  +  A  K   A+ +LT+ ++  M       + 
Sbjct: 41  QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG------------LENIE 122
             L L +G   +A    +++   +P  +   +  + ++ +                 +  
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 123 LAISHYLMAINLNEKNIRALYGLA 146
            AI+     + +   +       A
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRA 184

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 3/138 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
                L  L   ++    +  A                    +   L       E    L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
             +  ++  +A+A   +++     P +  +       L   G     E A + Y  A  L
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG---QAEAAAAAYTRAHQL 120

Query: 135 NEKNIRALYGLALSCHQV 152
             +       L     ++
Sbjct: 121 LPEEPYITAQLLNWRRRL 138

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 11/133 (8%), Positives = 30/133 (22%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
                   ++  + +   +  A  R   +   + +  EA   L +              L
Sbjct: 38  DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                  G    A           P    +  +  +          +++  +    A+  
Sbjct: 98  GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157

Query: 135 NEKNIRALYGLAL 147
               +     L+ 
Sbjct: 158 GVGAVEPFAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 3/70 (4%)

Query: 82  GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 141
            D  + +  +     H P + +     AD     G   +           + L+  +  A
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMG---DTTAGEMAVQRGLALHPGHPEA 59

Query: 142 LYGLALSCHQ 151
           +  L      
Sbjct: 60  VARLGRVRWT 69

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.1 bits (137), Expect = 5e-10
 Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 3/153 (1%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             EEA+      +++     AA      +L+ + K+ EA+    E ++   T  + +  +
Sbjct: 24  NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +      D   A+ C       +P     H   A I    G   NI  AI+ Y  A+ L
Sbjct: 84  GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG---NIPEAIASYRTALKL 140

Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS 167
                 A   LA     V          KK +S
Sbjct: 141 KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 42  CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN 101
            I + +  I EA++   + L+ F         L  +   +G   +A+   +E     P  
Sbjct: 17  NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 76

Query: 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
              +    + L       +++ A+  Y  AI +N     A   LA     
Sbjct: 77  ADAYSNMGNTLKEMQ---DVQGALQCYTRAIQINPAFADAHSNLASIHKD 123

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.9 bits (132), Expect = 8e-10
 Identities = 21/106 (19%), Positives = 40/106 (37%)

Query: 46  AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105
           ++      ++ L + ++    + E W  L + YL + DY+ ++    +       N  L+
Sbjct: 22  SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81

Query: 106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
              A +LY Q          +    A+ L+   I AL  LA     
Sbjct: 82  AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM 127

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 3/133 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            +E A  H   + + +  NT        I     ++  +    T  +K+     E +  L
Sbjct: 14  DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            ++Y   G   +A+          P     +   A  L   G   ++E A+  Y+ A+  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG---DMEGAVQAYVSALQY 130

Query: 135 NEKNIRALYGLAL 147
           N         L  
Sbjct: 131 NPDLYCVRSDLGN 143

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 3/137 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           R + +       IK +     A      + K + ++ EAI+     L+      + +  L
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
               ++ GD   AV        ++P  + +     ++L   G    +E A + YL AI  
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG---RLEEAKACYLKAIET 164

Query: 135 NEKNIRALYGLALSCHQ 151
                 A   L    + 
Sbjct: 165 QPNFAVAWSNLGCVFNA 181

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 3/133 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           + +EA+EH    +++              L A   +  A++     L+          +L
Sbjct: 82  QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +L  + G   +A  C  +     P+  +       +   QG    I LAI H+  A+ L
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG---EIWLAIHHFEKAVTL 198

Query: 135 NEKNIRALYGLAL 147
           +   + A   L  
Sbjct: 199 DPNFLDAYINLGN 211

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 3/133 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             + A++     I++      A       LK K  + EA       L+   T  ++   L
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            ++   +G+  +AV    +     P     H   A +L  QG    ++ A+ HY  AI +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRI 368

Query: 135 NEKNIRALYGLAL 147
           +     A   +  
Sbjct: 369 SPTFADAYSNMGN 381

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           R EEA       I+       A     C+  A+ +I  AI    + +       + +  L
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            ++      + +AV          P++ ++H   A + Y QG    I+LAI  Y  AI L
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRAIEL 266

Query: 135 NEKNIRALYGLALSCHQ 151
                 A   LA +  +
Sbjct: 267 QPHFPDAYCNLANALKE 283

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 13/109 (11%), Positives = 31/109 (28%), Gaps = 3/109 (2%)

Query: 43  ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH 102
                     A +   +  ++   +      L  ++       ++          +P   
Sbjct: 8   REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67

Query: 103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
             +    ++   +G    ++ AI HY  A+ L    I     LA +   
Sbjct: 68  EAYSNLGNVYKERG---QLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 3/137 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            ++ A+      + +   +        C+   +  I  AI      ++      + +  L
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +    +G  A+A  C        P +       A+I   QG   NIE A+  Y  A+ +
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEV 334

Query: 135 NEKNIRALYGLALSCHQ 151
             +   A   LA    Q
Sbjct: 335 FPEFAAAHSNLASVLQQ 351

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 13/150 (8%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            Y+ A E  +    ++  N     +  C+L  + K  E+     E   KF T  E     
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLH-------------QRYADILYTQGGLENI 121
            ++    GD+  A+   +           +H              R +    TQ   E  
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 122 ELAISHYLMAINLNEKNIRALYGLALSCHQ 151
             AI     A  L+ ++ +A  GLA    Q
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 18/134 (13%), Positives = 39/134 (29%), Gaps = 4/134 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            Y   L        + E    A          KN + +A   L E +        ++  L
Sbjct: 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH-PTPNSYIFL 282

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                 + +  +     ++    +P     +     + +      + + A   +  A +L
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ---DYKNAKEDFQKAQSL 339

Query: 135 NEKNIRALYGLALS 148
           N +N+     LA  
Sbjct: 340 NPENVYPYIQLACL 353

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 18/149 (12%), Positives = 33/149 (22%), Gaps = 19/149 (12%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK------------ 62
           ++ E+            T          IL  +     AIK+     +            
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418

Query: 63  ----KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118
                  T            L E  +  A+  + +     P +       A +       
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME-- 476

Query: 119 ENIELAISHYLMAINLNEKNIRALYGLAL 147
             I+ AI  +  +  L       L     
Sbjct: 477 -KIDEAIELFEDSAILARTMDEKLQATTF 504

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 6/135 (4%)

Query: 15  RYEEALEHLETIIKIDETNTAA--RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQ 72
            Y+ A   L   ++   + T          + K+ +     +   T              
Sbjct: 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247

Query: 73  ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132
                +  + +   A   ++E    HP  +      A  L  +    N +     +  A+
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL-ALTLADKE---NSQEFFKFFQKAV 303

Query: 133 NLNEKNIRALYGLAL 147
           +LN +     Y    
Sbjct: 304 DLNPEYPPTYYHRGQ 318

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 7/126 (5%)

Query: 15  RYEEALEHLETIIKIDETNTAAR----KRKICILKAKNKIPEAIKELTEYLKKFMTDQET 70
            +      +  +  +  +   A     K +           EAIK     ++    +   
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 71  WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130
           +  +   Y+S GD  K +    +     P +     R A    + G   N   A+    +
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG---NFTDAMFDLSV 118

Query: 131 AINLNE 136
                +
Sbjct: 119 LSLNGD 124

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.0 bits (128), Expect = 7e-09
 Identities = 22/124 (17%), Positives = 44/124 (35%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           +   A++  +  +  D T      +       K   P AI+ + + ++   TD + + EL
Sbjct: 89  QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
              Y    +Y KA     ++    P+ ++ +   A     Q       LA  +Y   I +
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208

Query: 135 NEKN 138
               
Sbjct: 209 CAPG 212

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 6/137 (4%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETW 71
            Y EA+E    +      +     R+        K   A K++  Y  K          +
Sbjct: 18  NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77

Query: 72  QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131
           +    + + +G  + A+   +           ++ +     Y +G   N  LAI +    
Sbjct: 78  EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQ 134

Query: 132 INLNEKNIRALYGLALS 148
           I     + +  Y L  +
Sbjct: 135 IRPTTTDPKVFYELGQA 151

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 15  RYEEALEHLET---IIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW 71
           +Y+ A + +ET    +   +  +A  +    IL  K +   AI++    + +  T  + +
Sbjct: 52  KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111

Query: 72  QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131
            ++   + ++G++  A+  ME+       +  +        Y          A S ++  
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK---EYVKADSSFVKV 168

Query: 132 INLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163
           + L           A +        K   AK 
Sbjct: 169 LELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 6/108 (5%)

Query: 43  ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELF---LHHP 99
            L   N   EAI+   +   K       +      Y     Y  A   +E  F       
Sbjct: 12  FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK 71

Query: 100 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147
                 + Y  IL  +G      LAI  Y  A++ +   +     +  
Sbjct: 72  AKSADFEYYGKILMKKG---QDSLAIQQYQAAVDRDTTRLDMYGQIGS 116

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 23/166 (13%), Positives = 58/166 (34%), Gaps = 18/166 (10%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIP---------------EAIKELTE 59
           + +EA +  + ++K + +    ++ +  ++KA                     AI  L +
Sbjct: 86  KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145

Query: 60  YLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
            L+  + D E  +   + ++ EG+  KA+  ++        N     + + + Y  G   
Sbjct: 146 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG--- 202

Query: 120 NIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165
           + EL++S     + L++ + R                      +  
Sbjct: 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG 248

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 12/144 (8%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           +  +AL      +  D  N  A  R+  +  A  K   A+ +LT+ +   M       + 
Sbjct: 18  QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG------------LENIE 122
             L L +G   +A    +++   +P      +  + ++                   +  
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 123 LAISHYLMAINLNEKNIRALYGLA 146
            AI+     + +   +       A
Sbjct: 138 AAITFLDKILEVCVWDAELRELRA 161

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 19/150 (12%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTE------------YLK 62
              +A+  L+   K+   NT A  +   +         ++ E+ E               
Sbjct: 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228

Query: 63  KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP----HNHLLHQRYADILYTQGGL 118
           K +       E  +  + +G Y  A    E +    P    +     +R           
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE-- 286

Query: 119 ENIELAISHYLMAINLNEKNIRALYGLALS 148
                AI      + +   N+ AL   A +
Sbjct: 287 -KPVEAIRICSEVLQMEPDNVNALKDRAEA 315

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 19/148 (12%)

Query: 15  RYEEALEHLETIIKIDETNTAAR------------KRKICILKAKNKIPEAIKELTEYLK 62
            +E +L  +   +K+D+ +                      L    +  +A  +    +K
Sbjct: 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262

Query: 63  ----KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118
                      + + +C  +  +    +A+    E+    P N    +  A+        
Sbjct: 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL---IE 319

Query: 119 ENIELAISHYLMAINLNEKNIRALYGLA 146
           E  + AI  Y  A   NE + +   GL 
Sbjct: 320 EMYDEAIQDYEAAQEHNENDQQIREGLE 347

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 13/150 (8%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            Y  A+  L+ I+++   +   R+ +      + +  +AI +L    K    + E + ++
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHP-----HNHLLHQRYADILYTQG----GLENIELAI 125
             LY   GD+  ++  + E             H    +  + L               A 
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254

Query: 126 SHYLMAINLN----EKNIRALYGLALSCHQ 151
           S Y   +       E  +R+   +     +
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSK 284

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKIC----ILKAKNKIPEAIKELTEYLKKFMTDQET 70
           RY +A    E+++K + +      R             K  EAI+  +E L+    +   
Sbjct: 249 RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308

Query: 71  WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116
            ++  + YL E  Y +A+   E    H+ ++  + +          
Sbjct: 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 24/146 (16%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAK-------------------NKIPEAIK 55
             ++A+E L+  ++    N     +  C  +AK                     I  A+ 
Sbjct: 262 EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321

Query: 56  ELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELF---LHHPHNHLLHQRYADIL 112
            L +  +           L  L+     Y +A +  ++ F   L      LLH RY +  
Sbjct: 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381

Query: 113 YTQGGLENIELAISHYLMAINLNEKN 138
             Q   E  + AI H++  + +N+K+
Sbjct: 382 LYQMKCE--DKAIHHFIEGVKINQKS 405

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 20/155 (12%)

Query: 13  FFRYEEALEHLETIIKIDETNTAARKRKICIL----KAKNKIPEAIKELTEYLKKFMTDQ 68
           +   + A++ L   I+++  N   +      L    +   +  E  K + E L+K     
Sbjct: 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT 247

Query: 69  ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----------- 117
           +  +     Y  + +  KA+  +++   + P+N  LH +       +             
Sbjct: 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307

Query: 118 -----LENIELAISHYLMAINLNEKNIRALYGLAL 147
                LE I  A++H   A   N+   R    LA 
Sbjct: 308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 10/140 (7%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICI---LKAKNKIPEAIKELTEYLKKFMTDQETW 71
           + E A    E  ++    N             L        AI  L + ++    +Q   
Sbjct: 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212

Query: 72  ----QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH 127
                +L  +     +  +    +EE     P    + +  A     +      + AI  
Sbjct: 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD---EPDKAIEL 269

Query: 128 YLMAINLNEKNIRALYGLAL 147
              A+     N      +  
Sbjct: 270 LKKALEYIPNNAYLHCQIGC 289

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 4/133 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
                L  L+  I+  + +    +    IL       + +K+            E  +  
Sbjct: 87  NAYHKLGDLKKTIEYYQKSLTEHRTAD-ILTKLRNAEKELKKAEAEAYVNPEKAEEARLE 145

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
              Y ++ D+  AV    E+    P +   +   A  L       +   AI+    AI  
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM---SFPEAIADCNKAIEK 202

Query: 135 NEKNIRALYGLAL 147
           +   +RA    A 
Sbjct: 203 DPNFVRAYIRKAT 215

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 4/133 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            YE A+  L   ++      A  K               + +L + ++ +     T    
Sbjct: 53  EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY-QKSLTEHRT 111

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            D+     +  K +   E     +P      +      +T+    +   A+  Y   I  
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS---DWPNAVKAYTEMIKR 168

Query: 135 NEKNIRALYGLAL 147
             ++ R     A 
Sbjct: 169 APEDARGYSNRAA 181

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 3/133 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             E+ L+  E    ++       + +      K+  P A+K  TE +K+   D   +   
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                    + +A+    +     P+    + R A              A+     A   
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK---EYASALETLDAARTK 236

Query: 135 NEKNIRALYGLAL 147
           + +         +
Sbjct: 237 DAEVNNGSSAREI 249

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 5/137 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           +++EA+EH     ++ +  T    R       K +   AI  L + +++    +  ++ +
Sbjct: 20  QFDEAIEHYNKAWELHKDITYLNNRAAA-EYEKGEYETAISTLNDAVEQGREMRADYKVI 78

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
              +   G+    +  +++   ++  +   H+  ADIL       N E  +        +
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLR---NAEKELKKAEAEAYV 134

Query: 135 NEKNIRALYGLALSCHQ 151
           N +              
Sbjct: 135 NPEKAEEARLEGKEYFT 151

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 10/139 (7%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------ 68
               A E+L++   + + +         +   K+ +  AI      L      Q      
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515

Query: 69  -ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH 127
             TW  L   Y     Y  A+  + +  L   ++  +H   A +   +       LAI+H
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK---IPGLAITH 572

Query: 128 YLMAINLNEKNIRALYGLA 146
              ++ ++   I A   L 
Sbjct: 573 LHESLAISPNEIMASDLLK 591

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 3/133 (2%)

Query: 16  YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
                E   + I   E ++     K   L  +++  + +   T+ L+    + + +    
Sbjct: 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346

Query: 76  DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
                 G+  K      +L   HP   +                 I  A  ++  +  ++
Sbjct: 347 ASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN---KISEARRYFSKSSTMD 403

Query: 136 EKNIRALYGLALS 148
            +   A  G A S
Sbjct: 404 PQFGPAWIGFAHS 416

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 3/142 (2%)

Query: 10  CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69
            F   R+ + L     I++ID  N       +  L    +  +      + + +      
Sbjct: 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374

Query: 70  TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYL 129
           TW  +   YL     ++A     +     P        +A     +G     + AIS Y 
Sbjct: 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG---EHDQAISAYT 431

Query: 130 MAINLNEKNIRALYGLALSCHQ 151
            A  L +        L +   Q
Sbjct: 432 TAARLFQGTHLPYLFLGMQHMQ 453

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 12/141 (8%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------ 68
             + A       + I   +         +     +   A K   + L+K           
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233

Query: 69  ---ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI 125
                   L  +      YA+A+    +  +  P N   +     I    G   N E A+
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG---NFENAV 290

Query: 126 SHYLMAINLNEKNIRALYGLA 146
            ++  A+ L   +  ++  L 
Sbjct: 291 DYFHTALGLRRDDTFSVTMLG 311

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 17/143 (11%), Positives = 43/143 (30%), Gaps = 4/143 (2%)

Query: 10  CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69
            ++   ++   +    +++ D  + +     I  L   NK  E      + +  + ++  
Sbjct: 32  HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91

Query: 70  TWQELCDLYLSEG-DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
           +W  +   YL  G     A   + +              Y      +      + A++ Y
Sbjct: 92  SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---EHDQAMAAY 148

Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
             A  L +     +  + L    
Sbjct: 149 FTAAQLMKGCHLPMLYIGLEYGL 171

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 11/111 (9%), Positives = 35/111 (31%), Gaps = 17/111 (15%)

Query: 55  KELTEYLKKFMTDQETWQELCDL--------------YLSEGDYAKAVFCMEELFLHHPH 100
           + ++  +   +    T +++  +              + ++G   +A      L ++  +
Sbjct: 9   ESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY 68

Query: 101 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
           N       A I   +      + A   Y +A  L + +   ++       +
Sbjct: 69  NVDYIMGLAAIYQIKE---QFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 18/103 (17%), Positives = 25/103 (24%), Gaps = 2/103 (1%)

Query: 6   YIIGCFHFF--RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK 63
           Y      +   R EEA      +   D  N         I + K +  +A          
Sbjct: 40  YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99

Query: 64  FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106
              D           L      KA  C E +  H     L  +
Sbjct: 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIK 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 9e-07
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 40/139 (28%)

Query: 6   YIIGCFHFFRYEEALEHLETIIKIDETNTAAR--------KRKIC----ILKAKNKIPEA 53
           Y    +    +     HL+ I   +               ++KI        A   I   
Sbjct: 472 YF---YSHIGH-----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 54  IKELTEYLKKFMTDQE-TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL 112
           +++L  Y K ++ D +  ++ L +  L               FL     +L+  +Y D+L
Sbjct: 524 LQQLKFY-KPYICDNDPKYERLVNAILD--------------FLPKIEENLICSKYTDLL 568

Query: 113 YTQGGLENIELAISHYLMA 131
             +  L   + AI  +  A
Sbjct: 569 --RIALMAEDEAI--FEEA 583

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 9/133 (6%), Positives = 27/133 (20%), Gaps = 3/133 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     +      A        +A   +   +  L +               
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN 180

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                +     + +  + +     P   +                 ++  +     A  L
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE---TVQRLLPVLCQAHGL 237

Query: 135 NEKNIRALYGLAL 147
             + + A+     
Sbjct: 238 TPQQVVAIASNGG 250

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 9/133 (6%), Positives = 26/133 (19%), Gaps = 3/133 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     +      A        +A   +   +  L +               
Sbjct: 87  TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 146

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                +       +  + +     P   +                 ++  +     A  L
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALE---TVQRLLPVLCQAHGL 203

Query: 135 NEKNIRALYGLAL 147
             + + A+     
Sbjct: 204 TPQQVVAIASNGG 216

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 9/134 (6%), Positives = 28/134 (20%), Gaps = 3/134 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     +      A        +A   +   +  L +               
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                +     + +  + +     P   +    +            ++  +     A  L
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE---TVQRLLPVLCQAHGL 373

Query: 135 NEKNIRALYGLALS 148
             + + A+      
Sbjct: 374 TPEQVVAIASNGGG 387

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 9/133 (6%), Positives = 28/133 (21%), Gaps = 3/133 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     +      A        +A   +   +  L +               
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                +     + +  + +     P   +                 ++  +     A  L
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE---TVQRLLPVLCQAHGL 271

Query: 135 NEKNIRALYGLAL 147
             + + A+   + 
Sbjct: 272 TPQQVVAIASNSG 284

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.3 bits (97), Expect = 9e-05
 Identities = 12/132 (9%), Positives = 30/132 (22%), Gaps = 3/132 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     +      A        +A   +   +  L +               
Sbjct: 223 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 282

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                +     + +  + +     P         A     +  LE ++  +     A  L
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQ---VVAIASNGGGKQALETVQRLLPVLCQAHGL 339

Query: 135 NEKNIRALYGLA 146
             + + A+    
Sbjct: 340 TPQQVVAIASHD 351

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 13/138 (9%), Positives = 32/138 (23%), Gaps = 11/138 (7%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     +      A        +A   +   +  L +               
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
                +     + +  + +        H L       + +  G    LE ++  +     
Sbjct: 385 GGGKQALETVQRLLPVLCQA-------HGLTPEQVVAIASHDGGKQALETVQRLLPVLCQ 437

Query: 131 AINLNEKNIRALYGLALS 148
           A  L  + + A+      
Sbjct: 438 AHGLTPQQVVAIASNGGG 455

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 16/140 (11%), Positives = 37/140 (26%), Gaps = 15/140 (10%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     +      A        +A   +   +  L +               
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
                +     + +  + +     P       +    + + GG    LE+I   +S    
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTP-------QQVVAIASNGGGRPALESIVAQLSRPDP 471

Query: 131 AINLNEKNIRALYGLALSCH 150
           A+     +    + +AL+C 
Sbjct: 472 ALAALTND----HLVALACL 487

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 15/149 (10%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEY------------LK 62
             ++A E L+  IK +       K K        ++ ++  + +                
Sbjct: 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207

Query: 63  KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122
             M D +    L  L+   G++ +A+          P ++ L  R    L         E
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD---RSE 264

Query: 123 LAISHYLMAINLNEKNIRALYGLALSCHQ 151
            A+  Y  A+ +    IR+ Y L +SC  
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCIN 293

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 16  YEEALEHLETIIKI-----DETNTAARKRKICI---LKAKNKIPEAIKELTEYLKKFMTD 67
           +E A   +E+  +       E    AR+  I      + +  +  + K    + +    D
Sbjct: 5   FERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKD 64

Query: 68  QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH 127
                E     L EGD    +  ME   L  P +    Q            EN + AI  
Sbjct: 65  WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA---ENENEQAAIVA 121

Query: 128 YLMAINLNEKNIRALYGLALS 148
               + L   N++AL  LA+S
Sbjct: 122 LQRCLELQPNNLKALMALAVS 142

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/154 (9%), Positives = 42/154 (27%), Gaps = 5/154 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
               + +      +    +      +      +  +P  I  +   + +   D E WQ L
Sbjct: 46  TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFL 105

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                   +   A+  ++      P+N       A          + + A       I  
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS---HQQDACEALKNWIKQ 162

Query: 135 NEKNIRALY--GLALSCHQVLTSAKCSAAKKKEI 166
           N K    +     +    + ++ +   ++  + +
Sbjct: 163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 19/134 (14%), Positives = 34/134 (25%), Gaps = 7/134 (5%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
                +  +E  I  D  +  A +              AI  L   L+    + +    L
Sbjct: 80  DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLEN-------IELAISH 127
              Y +      A   ++     +P    L +           +         +E     
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

Query: 128 YLMAINLNEKNIRA 141
           YL A + N   I  
Sbjct: 200 YLEAAHQNGDMIDP 213

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRK-ICILKAKNKIPEAIKELTEYLKKFMTDQETWQE 73
             E+ L+ +E ++   +    A   K   +    +  PEA   L++ +K      E W +
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142

Query: 74  LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG------GLENIELAISH 127
           L ++Y  +GD   A  C     L H  N +  Q  + +L             ++  ++  
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGA-LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 128 YLMAINLNEKNIRALYGLA 146
             +A+ ++  + R+ Y L 
Sbjct: 202 AKLAVQMDVLDGRSWYILG 220

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 18/152 (11%)

Query: 15  RYEEALEHLETIIKID---------------ETNTAARKRKICILKAKNKIPEAIKELTE 59
               AL  L   +                  + +    + +     A N+  E    L  
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163

Query: 60  YLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
            L+    D +    L  LY    +Y  A   +       P +  L  +    L       
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN--- 220

Query: 120 NIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
             + A+  Y  A+++N   +R +Y +A+S   
Sbjct: 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 18/145 (12%), Positives = 32/145 (22%), Gaps = 12/145 (8%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
              EA    E + +       A +          K   AI  L         D      L
Sbjct: 36  NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG------------LENIE 122
              + +E +   A+  +    L  P    L                              
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 123 LAISHYLMAINLNEKNIRALYGLAL 147
              +    A+ +N  + +    L +
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGV 180

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 3/100 (3%)

Query: 49  KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108
            + +   +            E   E     L   + A+A    E +    P      +  
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 148
                     E   LAI     A  L+ K+I     LA+S
Sbjct: 62  GLTQA---ENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 7/97 (7%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
              EA    E + + +     A +          K   AI  L         D      L
Sbjct: 32  NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI 111
              + +E +   A+  +    L  P       +Y  +
Sbjct: 92  AVSHTNEHNANAALASLRAWLLSQP-------QYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 65  MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124
               E   E     L   + A+A    E +    P      +       TQ   E   LA
Sbjct: 14  YMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLG---LTQAENEKDGLA 70

Query: 125 ISHYLMAINLNEKNIRALYGLALS 148
           I     A  L+ K+I     LA+S
Sbjct: 71  IIALNHARMLDPKDIAVHAALAVS 94

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 3/96 (3%)

Query: 42  CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN 101
             +     + EA        +K    +E W+ L            A+  +    +  P +
Sbjct: 25  LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84

Query: 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
             +H   A     +    N   A++     +    +
Sbjct: 85  IAVHAALAVSHTNEH---NANAALASLRAWLLSQPQ 117

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 12/101 (11%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           ++++A +  + +  +D  +           ++     +A++  +      + +       
Sbjct: 33  KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92

Query: 75  CDLYLSEGDYAKAVFCME---ELFLHHPHNHLLHQRYADIL 112
            + +L  GD   A         L    P +  L  R   +L
Sbjct: 93  AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 3/82 (3%)

Query: 67  DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAIS 126
             E    L       G +  A    + L +   ++            + G     E A+ 
Sbjct: 17  TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG---LYEQALQ 73

Query: 127 HYLMAINLNEKNIRALYGLALS 148
            Y     ++    R  +  A  
Sbjct: 74  SYSYGALMDINEPRFPFHAAEC 95

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 3/116 (2%)

Query: 23  LETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82
           L  +  + E                 K  +A K           D   +  L     S G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 83  DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138
            Y +A+       L   +        A+     G   +++ A S +  A  L    
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLG---DLDGAESGFYSARALAAAQ 119

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 2/107 (1%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRK--ICILKAKNKIPEAIKELTEYLKKFMTDQETWQ 72
           R + A + L+ +   DE  T  +     + +     K+ +A     E   K         
Sbjct: 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204

Query: 73  ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
                ++++G +  A   ++E       +         +    G   
Sbjct: 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP 251

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 16/150 (10%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            ++ AL+       + + ++       C+      + EA K  T  + +       + + 
Sbjct: 21  DWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 77

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNH---------LLHQRYADILY----TQGGLENI 121
             LY     Y  A+  ++E  +    N                 ++LY         E  
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137

Query: 122 ELAISHYLMAINLNEKNIRALYGLALSCHQ 151
           + A     +A ++  +   +    A+ C  
Sbjct: 138 KKAEEQLALATSMKSEPRHSKIDKAMECVW 167

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 20/154 (12%)

Query: 15  RYEEALEHLETIIKID---------------ETNTAARKRKICILKAKNKIPEAIKELTE 59
              +A E L   ++                        KR +  L + +   E  +    
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 206

Query: 60  --YLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG 117
              L     D +    L  L+   G+Y KAV C        P+++LL  +    L     
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN- 265

Query: 118 LENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
               E A++ Y  A+ L    IR+ Y L +SC  
Sbjct: 266 --QSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 29/142 (20%), Positives = 40/142 (28%), Gaps = 12/142 (8%)

Query: 16  YEEALEH----LETIIKIDETNTAARKRKICILKAKNKIPEAI-----KELTEYLKKFMT 66
           +E A       ++   K+        KR        +   +       K      +  + 
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62

Query: 67  DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAIS 126
           D     E     L EGD   AV   E      P +    Q            E   LAIS
Sbjct: 63  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA---ENEQELLAIS 119

Query: 127 HYLMAINLNEKNIRALYGLALS 148
                + L   N  AL  LA+S
Sbjct: 120 ALRRCLELKPDNQTALMALAVS 141

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 11/136 (8%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     + +    A    I   +A   +   +  L +               
Sbjct: 580 TVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 639

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
                +     + +  + +        H L       + + GG    LE ++  +     
Sbjct: 640 DGGKQALETVQRLLPVLCQA-------HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 692

Query: 131 AINLNEKNIRALYGLA 146
           A  L ++ + A+    
Sbjct: 693 AHGLTQEQVVAIASNN 708

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 14/135 (10%), Positives = 32/135 (23%), Gaps = 10/135 (7%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     +      A        +A   +   +  L +               
Sbjct: 309 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 368

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG---LENIELAISHYLMA 131
                +     + +  + +        H L       + + GG   LE ++  +     A
Sbjct: 369 GGGKQALETVQRLLPVLCQA-------HGLTPDQVVAIASNGGKQALETVQRLLPVLCQA 421

Query: 132 INLNEKNIRALYGLA 146
             L    + A+    
Sbjct: 422 HGLTPDQVVAIASHD 436

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 9/132 (6%), Positives = 27/132 (20%), Gaps = 3/132 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             +  L  L     +      A        +A   +   +  L +               
Sbjct: 546 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASN 605

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                +     + +  + +     P   +    +            ++  +     A  L
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE---TVQRLLPVLCQAHGL 662

Query: 135 NEKNIRALYGLA 146
               + A+    
Sbjct: 663 TPDQVVAIASNG 674

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 1/133 (0%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            ++ A E  ++++++D T   A   +   L    +   A  +L  + +    D      L
Sbjct: 92  NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
             L   + D  +A   +++ F                L        +E   +      +L
Sbjct: 152 Y-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL 210

Query: 135 NEKNIRALYGLAL 147
            E      + L  
Sbjct: 211 AEHLSETNFYLGK 223

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 14/130 (10%), Positives = 46/130 (35%), Gaps = 4/130 (3%)

Query: 15  RYEEALEHLETIIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE 73
           R E A +     I+++    T    R++ +   +  + E +  +T  +++   + + W  
Sbjct: 112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171

Query: 74  LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133
              L     D ++ +  + ++      N+   Q    ++      +  +  + +    + 
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE---FKLWDNELQYVDQLLK 228

Query: 134 LNEKNIRALY 143
            + +N     
Sbjct: 229 EDVRNNSVWN 238

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            YE+A E     I+ ++ +         +L + N++  A+    + L+   +    +   
Sbjct: 38  DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            ++Y+ +  Y +A    E+       N  L      +L         +LA+ +   A+ L
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE---QPKLALPYLQRAVEL 154

Query: 135 NEKNIRALYGLALS 148
           NE +  A +   + 
Sbjct: 155 NENDTEARFQFGMC 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.93
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.91
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.91
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.91
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.91
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.91
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.9
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.9
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.9
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.9
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.89
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.89
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.89
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.88
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.88
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.87
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.87
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.86
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.86
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.86
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.86
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.85
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.85
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.85
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.85
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.85
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.84
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.84
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.84
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.84
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.83
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.83
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.83
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.83
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.82
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.82
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.82
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.82
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.82
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.82
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.81
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.8
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.8
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.8
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.8
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.8
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.8
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.79
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.79
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.79
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.79
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.78
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.78
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.78
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.77
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.77
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.77
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.77
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.77
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.76
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.76
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.76
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.76
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.76
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.75
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.75
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.75
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.75
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.75
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.74
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.74
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.73
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.73
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.72
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.72
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.72
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.72
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.71
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.71
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.71
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.7
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.7
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.7
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.7
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.69
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.69
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.68
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.67
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.67
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.67
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.67
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.66
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.66
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.66
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.65
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.65
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.65
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.63
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.63
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.62
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.61
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.61
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.61
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.6
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.58
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.57
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.57
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.57
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.55
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.55
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.53
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.53
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.53
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.51
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.51
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.49
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.46
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.43
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.42
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.34
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.28
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.27
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.26
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.19
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.19
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.17
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.16
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.16
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.13
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.1
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.06
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.03
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.98
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.83
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.81
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.79
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.78
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.78
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.77
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.7
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.67
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.64
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.63
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.61
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.46
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.39
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.3
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.25
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.25
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.16
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.1
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.04
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.0
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.62
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.47
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.42
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.05
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.0
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	96.99
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.91
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.88
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.81
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.8
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.57
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.57
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.41
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.32
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.32
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.26
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.16
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.15
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.15
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.37
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.97
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.63
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.61
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.36
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.32
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.66
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	90.87
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	89.28
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	89.03
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	87.65
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.71
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	84.8
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	82.64
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	82.24
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	81.71
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.59

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.95  E-value=2.5e-25  Score=155.36  Aligned_cols=159  Identities=14%  Similarity=0.053  Sum_probs=152.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      -.+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...+++
T Consensus        10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (184)
T 3vtx_A           10 DIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK   89 (184)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      +.|...+.+++..+|.++.++..+|.++...|   ++++|+..|+++++++|+++.++.++|.++..+|++++|....++
T Consensus        90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A           90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMG---EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHhC---CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999   999999999999999999999999999999999999999776665


Q ss_pred             HH
Q psy12642        165 EI  166 (201)
Q Consensus       165 ~~  166 (201)
                      ..
T Consensus       167 al  168 (184)
T 3vtx_A          167 AL  168 (184)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=3.3e-25  Score=159.20  Aligned_cols=184  Identities=14%  Similarity=0.072  Sum_probs=159.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE--   81 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--   81 (201)
                      +..+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...  
T Consensus         9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~   88 (217)
T 2pl2_A            9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYR   88 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Confidence            456677899999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ---------CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642         82 ---------GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV  152 (201)
Q Consensus        82 ---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  152 (201)
                               |++++|+..|++++..+|+++.++..+|.++...|   ++++|+..|+++++++ +++.++..++.++...
T Consensus        89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~  164 (217)
T 2pl2_A           89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG---ERDKAEASLKQALALE-DTPEIRSALAELYLSM  164 (217)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred             hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc
Confidence                     99999999999999999999999999999999999   9999999999999999 9999999999999999


Q ss_pred             hhhhhhhhhhHHHHHHHh--HHHHHHHHHHHHhhhcchHHH
Q psy12642        153 LTSAKCSAAKKKEISKQM--MWVSKHLARQYEEQQGNTETL  191 (201)
Q Consensus       153 ~~~~~a~~~~~~~~~~~~--~~~~~~l~~~y~~~~~~~~~~  191 (201)
                      |++++|.....+......  ..+...+...|......++++
T Consensus       165 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~  205 (217)
T 2pl2_A          165 GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA  205 (217)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence            999999776666543222  223334555555555444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.94  E-value=1.4e-24  Score=179.93  Aligned_cols=160  Identities=20%  Similarity=0.146  Sum_probs=152.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      .-++..+..+|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+++.++..+|.++..+|+
T Consensus        13 ~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~   92 (723)
T 4gyw_A           13 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD   92 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            34667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +++|+.+|+++++++|+++.++.++|.++...|   ++++|+..|+++++++|+++.++.+++.++..+|++++|....+
T Consensus        93 ~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~  169 (723)
T 4gyw_A           93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSG---NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK  169 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence            999999999999999999999999999999999   99999999999999999999999999999999999999976555


Q ss_pred             HHH
Q psy12642        164 KEI  166 (201)
Q Consensus       164 ~~~  166 (201)
                      +..
T Consensus       170 kal  172 (723)
T 4gyw_A          170 KLV  172 (723)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=6.9e-25  Score=157.51  Aligned_cols=155  Identities=12%  Similarity=0.048  Sum_probs=140.3

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhcCCCHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAK-----------NKIPEAIKELTEYLKKFMTDQETWQ   72 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~   72 (201)
                      ...+..+...|++++|+..|+++++.+|+++.++..+|.++...           |++++|+..++++++.+|+++.++.
T Consensus        43 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~  122 (217)
T 2pl2_A           43 YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL  122 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHH
Confidence            44667788999999999999999999999999999999999999           9999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV  152 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  152 (201)
                      .+|.++...|++++|+..|++++.++ +++.++..+|.++...|   ++++|+..|+++++.+|+++.++..++.++...
T Consensus       123 ~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~  198 (217)
T 2pl2_A          123 QRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMG---RLDEALAQYAKALEQAPKDLDLRVRYASALLLK  198 (217)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            99999999999999999999999999 99999999999999999   999999999999999999999999999999999


Q ss_pred             hhhhhhhhhh
Q psy12642        153 LTSAKCSAAK  162 (201)
Q Consensus       153 ~~~~~a~~~~  162 (201)
                      |++++|....
T Consensus       199 g~~~~A~~~~  208 (217)
T 2pl2_A          199 GKAEEAARAA  208 (217)
T ss_dssp             ----------
T ss_pred             cCHHHHHHHH
Confidence            9999996543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.93  E-value=1e-25  Score=152.95  Aligned_cols=145  Identities=13%  Similarity=-0.046  Sum_probs=135.6

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..+...|++++|+..+++++..+|.++..++.+|.+|...|++++|+..++++++.+|+++.+|..+|.+|...|++++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHH-HHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH-YLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      |+.+|++++.++|+++.+++.+|.++...+   ++++|... ++++++++|+++.++...+.++...|+
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELLCKND---VTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999   99887765 589999999999999999999888775

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.93  E-value=5.9e-23  Score=148.01  Aligned_cols=149  Identities=17%  Similarity=0.121  Sum_probs=142.8

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDE-TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      +..+..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..+++++..+|+++.++..+|.++..+|
T Consensus        11 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   90 (228)
T 4i17_A           11 KNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMK   90 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc
Confidence            4466778999999999999999999998 899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCH-------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc--cHHHHHHHHHHHHHhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNH-------LLHQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALSCHQVL  153 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~  153 (201)
                      ++++|+..+++++..+|+++       .++..+|.++...|   ++++|+..|+++++++|+  ++.++.+++.+|...|
T Consensus        91 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  167 (228)
T 4i17_A           91 NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG---NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG  167 (228)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc---cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999       66999999999999   999999999999999999  9999999999999999


Q ss_pred             hh
Q psy12642        154 TS  155 (201)
Q Consensus       154 ~~  155 (201)
                      +.
T Consensus       168 ~~  169 (228)
T 4i17_A          168 AD  169 (228)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=1.5e-22  Score=146.42  Aligned_cols=193  Identities=15%  Similarity=0.101  Sum_probs=147.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++...|+
T Consensus        27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  106 (243)
T 2q7f_A           27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM  106 (243)
T ss_dssp             ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence            34556678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +++|+..+++++...|.++.++..+|.++...|   ++++|+..++++++..|+++.++..++.++...|++++|.....
T Consensus       107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  183 (243)
T 2q7f_A          107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE---QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA  183 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999   99999999999999999889999999999999999988876555


Q ss_pred             HHHHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642        164 KEISKQ--MMWVSKHLARQYEEQQGNTETLTELMSALQ  199 (201)
Q Consensus       164 ~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~  199 (201)
                      +.....  ...+...+...|......+.++..+.+++.
T Consensus       184 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          184 AVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            443321  123444566667766666666655555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.91  E-value=1.4e-23  Score=162.48  Aligned_cols=151  Identities=11%  Similarity=0.046  Sum_probs=141.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK-IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ..+..+...|++++|+..|+++++.+|++..+|..+|.++..+|+ +++|+..+++++.++|++..+|+.+|.++..+|+
T Consensus       102 ~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~  181 (382)
T 2h6f_A          102 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD  181 (382)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Confidence            345667788999999999999999999999999999999999997 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh-hhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV-LTSAKC  158 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~a  158 (201)
                      +++|+.+|++++.++|++..+|+.+|.++...|   ++++|+.+|+++++++|++..+|.+++.++..+ |..++|
T Consensus       182 ~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g---~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          182 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFK---LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence            999999999999999999999999999999999   999999999999999999999999999999994 443666

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.91  E-value=4.4e-23  Score=135.91  Aligned_cols=121  Identities=15%  Similarity=0.047  Sum_probs=116.0

Q ss_pred             HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642         26 IIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH  105 (201)
Q Consensus        26 ~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  105 (201)
                      +..++|+....+..+|..++..|++++|+..|+++++.+|+++.+|..+|.+|..+|++++|+..|++++.++|+++.++
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            44579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642        106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC  149 (201)
Q Consensus       106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  149 (201)
                      +.+|.++...|   ++++|+..|+++++++|+++.++.+++.|+
T Consensus        85 ~~lg~~~~~~~---~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           85 IRKAACLVAMR---EWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999   999999999999999999999999998774

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.91  E-value=3.6e-22  Score=153.11  Aligned_cols=194  Identities=13%  Similarity=0.095  Sum_probs=158.3

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      .+..+..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+|...|
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence            45567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCC----------------------------------------------CHHHHHHHHHHHHHcC
Q psy12642         83 DYAKAVFCMEELFLHHPH----------------------------------------------NHLLHQRYADILYTQG  116 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~----------------------------------------------~~~~~~~la~~~~~~~  116 (201)
                      ++++|+..|++++..+|+                                              ++.++..+|.++...|
T Consensus       148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG  227 (365)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence            988888888887766543                                              6778888888888888


Q ss_pred             CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHHH
Q psy12642        117 GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLTEL  194 (201)
Q Consensus       117 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~  194 (201)
                         ++++|+..|+++++.+|+++.++..++.++...|++++|.....+.....  ...+...+...|......++++..+
T Consensus       228 ---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  304 (365)
T 4eqf_A          228 ---EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF  304 (365)
T ss_dssp             ---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence               89999999999998888888888999999999998888877655544321  1334445666677666666666555


Q ss_pred             Hhhcc
Q psy12642        195 MSALQ  199 (201)
Q Consensus       195 ~~~~~  199 (201)
                      .+++.
T Consensus       305 ~~al~  309 (365)
T 4eqf_A          305 LTALS  309 (365)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.91  E-value=5.5e-22  Score=153.34  Aligned_cols=151  Identities=21%  Similarity=0.175  Sum_probs=88.2

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++
T Consensus       142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~  221 (388)
T 1w3b_A          142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR  221 (388)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            34445556666666666666666666666666666666666666666666666665555555555555555555555555


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      |+..|++++..+|+++.++..+|.++...|   ++++|+..|+++++.+|+++.++..++.++...|++++|..
T Consensus       222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  292 (388)
T 1w3b_A          222 AVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED  292 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHhhCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            555555555555555555555555555555   55555555555555555555555555555555555555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.91  E-value=5.9e-22  Score=149.17  Aligned_cols=191  Identities=13%  Similarity=0.008  Sum_probs=143.5

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      .++..+...|++++|+..++++++.+|.++.++..+|.++...| ++++|+..+++++..+|+++.+|..+|.++...|+
T Consensus        61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  140 (330)
T 3hym_B           61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE  140 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence            35566777788888888888888888888888888888888888 88888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +++|+..+++++...|++...+..+|.++...|   ++++|+..|+++++.+|+++.++..++.++...|++++|.....
T Consensus       141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  217 (330)
T 3hym_B          141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN---NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL  217 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence            888888888888888888888888888888888   88888888888888888888888888888888888888866554


Q ss_pred             HHHHHH---------h--HHHHHHHHHHHHhhhcchHHHHHHHhhc
Q psy12642        164 KEISKQ---------M--MWVSKHLARQYEEQQGNTETLTELMSAL  198 (201)
Q Consensus       164 ~~~~~~---------~--~~~~~~l~~~y~~~~~~~~~~~~~~~~~  198 (201)
                      +.....         .  ..+...+...|......++++..+.+++
T Consensus       218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  263 (330)
T 3hym_B          218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL  263 (330)
T ss_dssp             HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            443321         1  1233445555655555555555444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.91  E-value=1.3e-21  Score=151.29  Aligned_cols=192  Identities=17%  Similarity=0.080  Sum_probs=142.8

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+++
T Consensus       175 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  254 (388)
T 1w3b_A          175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHH
Confidence            44556777788888888888888888888888888888888888888888888888888888778888888888888888


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      +|+..|++++..+|+++.++..+|.++...|   ++++|+..|+++++.+|+++.++..++.++...|+.++|.....+.
T Consensus       255 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  331 (388)
T 1w3b_A          255 LAIDTYRRAIELQPHFPDAYCNLANALKEKG---SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888888888888887878888888888888   7888888888888888877778888888888888877776655444


Q ss_pred             HHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        166 ISKQ--MMWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       166 ~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      ....  ...+...+...|......++++..+.+++.+
T Consensus       332 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3221  1234445666677777666666666666554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=9.9e-23  Score=157.76  Aligned_cols=178  Identities=12%  Similarity=0.066  Sum_probs=153.5

Q ss_pred             HHHHHhhhhccC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          4 IVYIIGCFHFFR-YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         4 ~~~~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      ...+..+...|+ +++|+..|+++++.+|++..+|..+|.++..+|++++|+..+++++.++|++..+|+.+|.++..+|
T Consensus       135 ~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g  214 (382)
T 2h6f_A          135 HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  214 (382)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC
Confidence            445667888896 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-cCCcccHHHH-----HHHHHHHHcCCcccHHHHHHHHHHHHHhh--h
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYT-QGGLENIELA-----ISHYLMAINLNEKNIRALYGLALSCHQVL--T  154 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~  154 (201)
                      ++++|+.+|++++.++|++..+|..+|.++.. .+   ..++|     +.+|++++.++|++..+|.+++.++...|  +
T Consensus       215 ~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~---~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~  291 (382)
T 2h6f_A          215 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG---YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK  291 (382)
T ss_dssp             CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc
Confidence            99999999999999999999999999999999 55   44677     69999999999999999999999999988  4


Q ss_pred             hhhhhhhhHHH-HHHHhHHHHHHHHHHHHhh
Q psy12642        155 SAKCSAAKKKE-ISKQMMWVSKHLARQYEEQ  184 (201)
Q Consensus       155 ~~~a~~~~~~~-~~~~~~~~~~~l~~~y~~~  184 (201)
                      +.++.....+. ...-..++...+...|.++
T Consensus       292 ~~~a~~~~~~~~~~p~~~~al~~La~~~~~~  322 (382)
T 2h6f_A          292 YPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM  322 (382)
T ss_dssp             CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            66664433221 1111235556667777665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.90  E-value=8.2e-22  Score=151.11  Aligned_cols=184  Identities=16%  Similarity=0.144  Sum_probs=153.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-------------------   64 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------   64 (201)
                      ...+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..                   
T Consensus       103 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  182 (365)
T 4eqf_A          103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR  182 (365)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHH
Confidence            3456667788888888888888888888888888888888888888888877777766544                   


Q ss_pred             -------------------------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q psy12642         65 -------------------------MT--DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG  117 (201)
Q Consensus        65 -------------------------p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~  117 (201)
                                               |+  ++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...| 
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-  261 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD-  261 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Confidence                                     44  78899999999999999999999999999999999999999999999999 


Q ss_pred             cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--------------hHHHHHHHHHHHHh
Q psy12642        118 LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ--------------MMWVSKHLARQYEE  183 (201)
Q Consensus       118 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~l~~~y~~  183 (201)
                        ++++|+..|+++++.+|+++.++..++.++...|++++|.....+.....              .......+...+..
T Consensus       262 --~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (365)
T 4eqf_A          262 --RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL  339 (365)
T ss_dssp             --CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence              99999999999999999999999999999999999999977666554322              12344556666666


Q ss_pred             hhcchHH
Q psy12642        184 QQGNTET  190 (201)
Q Consensus       184 ~~~~~~~  190 (201)
                      ....+.+
T Consensus       340 ~g~~~~a  346 (365)
T 4eqf_A          340 MDQPELF  346 (365)
T ss_dssp             HTCHHHH
T ss_pred             cCcHHHH
Confidence            5555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=1.1e-21  Score=144.44  Aligned_cols=191  Identities=13%  Similarity=0.118  Sum_probs=119.2

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETN----TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS   80 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~   80 (201)
                      ..+..+...|++++|+..++++++ .|.+    ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus        42 ~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  120 (272)
T 3u4t_A           42 RRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN  120 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            344556666666666666666666 2222    23466666677777777777777777777777776677777777777


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh---hhh
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT---SAK  157 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~  157 (201)
                      .|++++|+.+|++++..+|.++.++..+|...+..+   ++++|+..|+++++.+|+++.++..++.++..+|+   .++
T Consensus       121 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  197 (272)
T 3u4t_A          121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK---EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGL  197 (272)
T ss_dssp             TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCT
T ss_pred             ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHH
Confidence            777777777777777777777777777774444455   67777777777777777777777777777777776   555


Q ss_pred             hhhhhHHHHHHH----------hHHHHHHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642        158 CSAAKKKEISKQ----------MMWVSKHLARQYEEQQGNTETLTELMSALQ  199 (201)
Q Consensus       158 a~~~~~~~~~~~----------~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~  199 (201)
                      |.....+.....          ...+...+...|......++++..+.+++.
T Consensus       198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  249 (272)
T 3u4t_A          198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA  249 (272)
T ss_dssp             THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            544433332211          113334455666666555556665555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.90  E-value=1.5e-22  Score=161.04  Aligned_cols=159  Identities=11%  Similarity=-0.034  Sum_probs=150.4

Q ss_pred             HHHHHhhhhccCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q psy12642          4 IVYIIGCFHFFRY-EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-   81 (201)
Q Consensus         4 ~~~~~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-   81 (201)
                      +..+..+...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++... 
T Consensus       106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~  184 (474)
T 4abn_A          106 MLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQ  184 (474)
T ss_dssp             HHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhc
Confidence            4456778899999 99999999999999999999999999999999999999999999999999 79999999999999 


Q ss_pred             --------CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc--------CCcccHHHHHHHHHHHHcCCc---ccHHHH
Q psy12642         82 --------GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ--------GGLENIELAISHYLMAINLNE---KNIRAL  142 (201)
Q Consensus        82 --------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------~~~~~~~~A~~~~~~al~~~p---~~~~~~  142 (201)
                              |++++|+..|++++..+|+++.++..+|.++...        +   ++++|+.+|+++++++|   +++.++
T Consensus       185 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~  261 (474)
T 4abn_A          185 TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK---ISQQALSAYAQAEKVDRKASSNPDLH  261 (474)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred             cCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHhCCCcccCHHHH
Confidence                    9999999999999999999999999999999998        8   99999999999999999   999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        143 YGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       143 ~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      ++++.++...|++++|.....+..
T Consensus       262 ~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          262 LNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999977665544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.90  E-value=4e-21  Score=137.09  Aligned_cols=160  Identities=14%  Similarity=0.011  Sum_probs=150.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-G   82 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~   82 (201)
                      ...+..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++... |
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~   91 (225)
T 2vq2_A           12 TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN   91 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence            445677889999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             CHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFL--HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        83 ~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      ++++|+..+++++.  ..|.+..++..+|.++...|   ++++|+.+|+++++..|+++.++..++.++...|++++|..
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  168 (225)
T 2vq2_A           92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG---QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY  168 (225)
T ss_dssp             CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999  66777899999999999999   99999999999999999999999999999999999999977


Q ss_pred             hhHHHH
Q psy12642        161 AKKKEI  166 (201)
Q Consensus       161 ~~~~~~  166 (201)
                      ...+..
T Consensus       169 ~~~~~~  174 (225)
T 2vq2_A          169 YFKKYQ  174 (225)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.90  E-value=4.9e-22  Score=141.72  Aligned_cols=161  Identities=13%  Similarity=0.071  Sum_probs=141.0

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKR----------------KICILKAKNKIPEAIKELTEYLKKFMTD   67 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~~~~~~p~~   67 (201)
                      +..+..++..|++++|+..|+++++.+|+++.+++.                +|.++...|++++|+..++++++.+|++
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   87 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN   87 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            445677889999999999999999999999999999                9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL  147 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  147 (201)
                      +.++..+|.++...|++++|+.+|++++.++|+++.+++.+|.+++..+. .....+...+.+++...|. ..+++.++.
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~a~~~~g~  165 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSSPTKM-QYARYRDGL  165 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987650 0355678888888765554 346788999


Q ss_pred             HHHHhhhhhhhhhhhHHHH
Q psy12642        148 SCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       148 ~~~~~~~~~~a~~~~~~~~  166 (201)
                      ++...|++++|.....+..
T Consensus       166 ~~~~~~~~~~A~~~~~~al  184 (208)
T 3urz_A          166 SKLFTTRYEKARNSLQKVI  184 (208)
T ss_dssp             HHHHHHTHHHHHHHHHHHT
T ss_pred             HHHHccCHHHHHHHHHHHH
Confidence            9999999999977666554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.90  E-value=6.9e-22  Score=136.87  Aligned_cols=157  Identities=18%  Similarity=0.115  Sum_probs=149.3

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      ..+..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   92 (186)
T 3as5_A           13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY   92 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      ++|+.++++++..+|.++..+..+|.++...|   ++++|+..++++++..|+++.++..++.++...|+.++|.....+
T Consensus        93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  169 (186)
T 3as5_A           93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLG---RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK  169 (186)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999   999999999999999999999999999999999999999554443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.90  E-value=7.1e-22  Score=145.22  Aligned_cols=160  Identities=14%  Similarity=0.130  Sum_probs=144.0

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDL   77 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~   77 (201)
                      +..+..++..|++++|+..|+++++.+|.+   +.+++.+|.++...|++++|+..++++++.+|++   +.+++.+|.+
T Consensus        19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~   98 (261)
T 3qky_A           19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC   98 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence            445677899999999999999999999998   8999999999999999999999999999998865   6789999999


Q ss_pred             HHh--------cCCHHHHHHHHHHHhhcCCCCHHHH-----------------HHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         78 YLS--------EGDYAKAVFCMEELFLHHPHNHLLH-----------------QRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        78 ~~~--------~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      +..        .|++++|+..|++++..+|+++...                 +.+|.++...|   ++++|+..|++++
T Consensus        99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l  175 (261)
T 3qky_A           99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE---LYEAAAVTYEAVF  175 (261)
T ss_dssp             HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHH
Confidence            999        9999999999999999999987665                 88899999999   9999999999999


Q ss_pred             cCCcc---cHHHHHHHHHHHHHh----------hhhhhhhhhhHHHH
Q psy12642        133 NLNEK---NIRALYGLALSCHQV----------LTSAKCSAAKKKEI  166 (201)
Q Consensus       133 ~~~p~---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~  166 (201)
                      +..|+   .+.+++.++.+|..+          |++++|....++..
T Consensus       176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~  222 (261)
T 3qky_A          176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL  222 (261)
T ss_dssp             HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence            99998   678999999999988          66677755544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=1.6e-21  Score=142.11  Aligned_cols=187  Identities=11%  Similarity=-0.008  Sum_probs=159.1

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus        41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  120 (252)
T 2ho1_A           41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR  120 (252)
T ss_dssp             HHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH
Confidence            44566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         84 YAKAVFCMEELFL--HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        84 ~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      +++|+.++++++.  ..|.++.++..+|.++...|   ++++|+.+|+++++..|+++.++..++.++...|++++|...
T Consensus       121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  197 (252)
T 2ho1_A          121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK---KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY  197 (252)
T ss_dssp             HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999  88888999999999999999   999999999999999999999999999999999999999765


Q ss_pred             hHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHH
Q psy12642        162 KKKEISKQ--MMWVSKHLARQYEEQQGNTETLTE  193 (201)
Q Consensus       162 ~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~  193 (201)
                      ..+.....  ...+...+...|......+.+...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  231 (252)
T 2ho1_A          198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY  231 (252)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            55433211  112233344445544444444333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=8.3e-22  Score=143.47  Aligned_cols=155  Identities=14%  Similarity=0.164  Sum_probs=98.3

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQELCDLY   78 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~   78 (201)
                      .+..++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+++++...|++       +.++..+|.++
T Consensus        11 ~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~   89 (258)
T 3uq3_A           11 EGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY   89 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence            4455566666666666666666666 666666666666666666666666666666666554       45666666666


Q ss_pred             HhcCCHHHHHHHHHHHhh--------------------------cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         79 LSEGDYAKAVFCMEELFL--------------------------HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        79 ~~~~~~~~A~~~~~~al~--------------------------~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      ...|++++|+.+|++++.                          .+|.++.++..+|.++...|   ++++|+..|++++
T Consensus        90 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~  166 (258)
T 3uq3_A           90 HKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS---DWPNAVKAYTEMI  166 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence            666666666666666666                          44455556666666666666   6666666666666


Q ss_pred             cCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642        133 NLNEKNIRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus       133 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      +.+|+++.++..++.++...|++++|.....+
T Consensus       167 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          167 KRAPEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            66666666666666666666666666554433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.90  E-value=1.7e-21  Score=140.89  Aligned_cols=160  Identities=14%  Similarity=0.121  Sum_probs=151.3

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+
T Consensus        61 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  140 (243)
T 2q7f_A           61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ  140 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +++|+..+++++...|.++.++..+|.++...|   ++++|+..|+++++.+|+++.++..++.++...|+.++|....+
T Consensus       141 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  217 (243)
T 2q7f_A          141 PKLALPYLQRAVELNENDTEARFQFGMCLANEG---MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD  217 (243)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999999999999999999999999999   99999999999999999999999999999999999999966554


Q ss_pred             HHH
Q psy12642        164 KEI  166 (201)
Q Consensus       164 ~~~  166 (201)
                      +..
T Consensus       218 ~~~  220 (243)
T 2q7f_A          218 KAI  220 (243)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.90  E-value=2.8e-21  Score=145.44  Aligned_cols=194  Identities=11%  Similarity=0.017  Sum_probs=161.8

Q ss_pred             HHHHHhhhhcc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          4 IVYIIGCFHFF-RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         4 ~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      ...+..+...| ++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++...|
T Consensus        94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            34556677888 89999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC---------cccHHHHHHHHHHHHHhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN---------EKNIRALYGLALSCHQVL  153 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~~  153 (201)
                      ++++|+..+++++..+|.++.++..+|.++...|   ++++|+..++++++..         |..+.++..++.++...|
T Consensus       174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG---EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999   9999999999999876         666788999999999999


Q ss_pred             hhhhhhhhhHHHHHH--HhHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        154 TSAKCSAAKKKEISK--QMMWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       154 ~~~~a~~~~~~~~~~--~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      ++++|.....+....  -...+...+...|......++++..+.+++.+
T Consensus       251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL  299 (330)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred             CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence            999997765554432  12344455667777777666677776666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=7.7e-21  Score=145.46  Aligned_cols=90  Identities=13%  Similarity=0.019  Sum_probs=47.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus        70 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  149 (368)
T 1fch_A           70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR  149 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555544


Q ss_pred             HHHHHHHHHh
Q psy12642         86 KAVFCMEELF   95 (201)
Q Consensus        86 ~A~~~~~~al   95 (201)
                      +|+..+++++
T Consensus       150 ~A~~~~~~~~  159 (368)
T 1fch_A          150 QACEILRDWL  159 (368)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=9.1e-21  Score=145.04  Aligned_cols=154  Identities=12%  Similarity=0.034  Sum_probs=105.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH-----------
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQ-----------   72 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-----------   72 (201)
                      ...+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|++...+.           
T Consensus       102 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (368)
T 1fch_A          102 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL  181 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcc
Confidence            445677889999999999999999999999999999999999999999999999999998877544332           


Q ss_pred             -----HHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642         73 -----ELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL  145 (201)
Q Consensus        73 -----~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  145 (201)
                           .++.++ ..|++++|+..|++++..+|.  ++.++..+|.++...|   ++++|+..|++++..+|+++.++..+
T Consensus       182 ~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l  257 (368)
T 1fch_A          182 GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG---EYDKAVDCFTAALSVRPNDYLLWNKL  257 (368)
T ss_dssp             ----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence                 233333 455555555555555555555  4555555555555555   55555555555555555555555555


Q ss_pred             HHHHHHhhhhhhhhhh
Q psy12642        146 ALSCHQVLTSAKCSAA  161 (201)
Q Consensus       146 ~~~~~~~~~~~~a~~~  161 (201)
                      +.++...|++++|...
T Consensus       258 ~~~~~~~g~~~~A~~~  273 (368)
T 1fch_A          258 GATLANGNQSEEAVAA  273 (368)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            5555555555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=9e-22  Score=143.29  Aligned_cols=160  Identities=16%  Similarity=0.064  Sum_probs=148.5

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETN-------TAARKRKICILKAKNKIPEAIKELTEYLK--------------   62 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------   62 (201)
                      ...+..+...|++++|+..++++++.+|.+       +.++..+|.++...|++++|+..+++++.              
T Consensus        42 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  121 (258)
T 3uq3_A           42 NNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNA  121 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence            446677889999999999999999999877       79999999999999999999999999999              


Q ss_pred             ------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         63 ------------KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM  130 (201)
Q Consensus        63 ------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  130 (201)
                                  .+|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|.++...|   ++++|+..|++
T Consensus       122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~  198 (258)
T 3uq3_A          122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM---SFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                        566678899999999999999999999999999999999999999999999999   99999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        131 AINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       131 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      +++.+|+++.++..++.++...|+.++|....++..
T Consensus       199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999999999999999966555444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=3.6e-21  Score=146.24  Aligned_cols=192  Identities=14%  Similarity=0.050  Sum_probs=159.0

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      .+..+..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG   85 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCC---CCHHHHHHH------------HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642         83 DYAKAVFCMEELFLHHP---HNHLLHQRY------------ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL  147 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~---~~~~~~~~l------------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  147 (201)
                      ++++|+..|++++..+|   +++..+..+            |.++...|   ++++|+..++++++.+|+++.++..++.
T Consensus        86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~  162 (359)
T 3ieg_A           86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA---DYTAAITFLDKILEVCVWDAELRELRAE  162 (359)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            99999999999999999   888887777            68888999   9999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhHHHHHH--HhHHHHHHHHHHHHhhhcchHHHHHHHhh
Q psy12642        148 SCHQVLTSAKCSAAKKKEISK--QMMWVSKHLARQYEEQQGNTETLTELMSA  197 (201)
Q Consensus       148 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~y~~~~~~~~~~~~~~~~  197 (201)
                      ++...|++++|.....+....  ....+...+...|......+.++..+.++
T Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999997655444321  11223334555555555444444444333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.89  E-value=7.1e-21  Score=132.61  Aligned_cols=166  Identities=19%  Similarity=0.144  Sum_probs=150.9

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642         32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI  111 (201)
Q Consensus        32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  111 (201)
                      +++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--HhHHHHHHHHHHHHhhhcchH
Q psy12642        112 LYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISK--QMMWVSKHLARQYEEQQGNTE  189 (201)
Q Consensus       112 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~y~~~~~~~~  189 (201)
                      +...+   +++.|+..+.+++..+|+++.++..+|.++..+|++++|....++....  ....+...+...|..+...++
T Consensus        83 ~~~~~---~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           83 NFMID---EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            99999   9999999999999999999999999999999999999998876665532  223455567888998888888


Q ss_pred             HHHHHHhhccC
Q psy12642        190 TLTELMSALQV  200 (201)
Q Consensus       190 ~~~~~~~~~~~  200 (201)
                      ++..+.+++++
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            88888888765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.89  E-value=1.4e-21  Score=143.82  Aligned_cols=160  Identities=15%  Similarity=0.151  Sum_probs=145.0

Q ss_pred             chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHH
Q psy12642          2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDL   77 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~   77 (201)
                      +.+.++..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+    ..++..+|.+
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999999999999999999999999999999 4444    4458999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH-HHHHHhhhhh
Q psy12642         78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA-LSCHQVLTSA  156 (201)
Q Consensus        78 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~  156 (201)
                      +...|++++|+.+|++++..+|.++.++..+|.++...|   ++++|+.+|+++++.+|+++.++..++ .++. .++++
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~  159 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYV  159 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHH
Confidence            999999999999999999999999999999999999999   999999999999999999999999999 5555 45888


Q ss_pred             hhhhhhHHHH
Q psy12642        157 KCSAAKKKEI  166 (201)
Q Consensus       157 ~a~~~~~~~~  166 (201)
                      +|.....+..
T Consensus       160 ~A~~~~~~a~  169 (272)
T 3u4t_A          160 KADSSFVKVL  169 (272)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8876555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.89  E-value=2.1e-21  Score=160.98  Aligned_cols=168  Identities=15%  Similarity=0.091  Sum_probs=149.0

Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642         29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY  108 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  108 (201)
                      ..|+++.++..+|.++..+|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|+++++++|+++.++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhc
Q psy12642        109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQG  186 (201)
Q Consensus       109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~  186 (201)
                      |.++...|   ++++|++.|+++++++|++..++.++|.++...|++++|....++...--  ...+...+...|.....
T Consensus        84 g~~l~~~g---~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           84 GNTLKEMQ---DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence            99999999   99999999999999999999999999999999999999988776665322  23445567777877777


Q ss_pred             chHHHHHHHhhcc
Q psy12642        187 NTETLTELMSALQ  199 (201)
Q Consensus       187 ~~~~~~~~~~~~~  199 (201)
                      .+++.+.+-+++.
T Consensus       161 ~~~A~~~~~kal~  173 (723)
T 4gyw_A          161 WTDYDERMKKLVS  173 (723)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7776665555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.89  E-value=1.7e-20  Score=147.25  Aligned_cols=192  Identities=15%  Similarity=0.077  Sum_probs=164.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...|+
T Consensus        30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  109 (450)
T 2y4t_A           30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK  109 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCH---HHHHHH------------HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNH---LLHQRY------------ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS  148 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~---~~~~~l------------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  148 (201)
                      +++|+..|++++..+|+++   ..+..+            |.++...|   ++++|+..|+++++..|+++.++..++.+
T Consensus       110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  186 (450)
T 2y4t_A          110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG---DYTAAIAFLDKILEVCVWDAELRELRAEC  186 (450)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999988   766555            66699999   99999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhc
Q psy12642        149 CHQVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLTELMSAL  198 (201)
Q Consensus       149 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~  198 (201)
                      +...|++++|.....+.....  ...+...+...|......+.++..+.+++
T Consensus       187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  238 (450)
T 2y4t_A          187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL  238 (450)
T ss_dssp             HHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999977655544221  22344455666666665555555554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.88  E-value=2.4e-22  Score=136.23  Aligned_cols=122  Identities=11%  Similarity=-0.043  Sum_probs=115.0

Q ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642         15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   94 (201)
                      ++-.+-..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+.+|+++
T Consensus        17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            34444456778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642         95 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        95 l~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                      +.++|+++.+++.+|.++...|   ++++|+..|++++++.|+.+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg---~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLK---APLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999   99999999999999999865

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=2.5e-21  Score=139.44  Aligned_cols=143  Identities=15%  Similarity=0.043  Sum_probs=133.7

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-------ETWQELCDL   77 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~   77 (201)
                      ..+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++       .++..+|.+
T Consensus        47 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  126 (228)
T 4i17_A           47 NCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK  126 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHH
Confidence            3567788999999999999999999999999999999999999999999999999999999998       669999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccH---------------------------HHHHHHH
Q psy12642         78 YLSEGDYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENI---------------------------ELAISHY  128 (201)
Q Consensus        78 ~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~---------------------------~~A~~~~  128 (201)
                      +...|++++|+..|++++..+|+  ++.++..+|.++...|   +.                           ++|+.+|
T Consensus       127 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  203 (228)
T 4i17_A          127 FQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG---ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYL  203 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH---HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH---HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999  9999999999999888   76                           8999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHH
Q psy12642        129 LMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus       129 ~~al~~~p~~~~~~~~l~~~~~  150 (201)
                      +++++++|+++.+...++.+..
T Consensus       204 ~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          204 GEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHhhcCCCCHHHHHHHHHHHH
Confidence            9999999999988887776643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=1.5e-20  Score=142.74  Aligned_cols=159  Identities=19%  Similarity=0.187  Sum_probs=149.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCHHHHHHH------
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM---TDQETWQEL------   74 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l------   74 (201)
                      ...+..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|   +++.++..+      
T Consensus        41 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  120 (359)
T 3ieg_A           41 YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM  120 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH
Confidence            44667788999999999999999999999999999999999999999999999999999999   888888777      


Q ss_pred             ------HHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         75 ------CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS  148 (201)
Q Consensus        75 ------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  148 (201)
                            |.++...|++++|+..+++++..+|.++.++..+|.++...|   ++++|+..++++++..|+++.++..++.+
T Consensus       121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~  197 (359)
T 3ieg_A          121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKSDNTEAFYKISTL  197 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                  789999999999999999999999999999999999999999   99999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhHHH
Q psy12642        149 CHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       149 ~~~~~~~~~a~~~~~~~  165 (201)
                      +...|++++|.....+.
T Consensus       198 ~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          198 YYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            99999999997755443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.88  E-value=1.5e-20  Score=136.94  Aligned_cols=158  Identities=15%  Similarity=0.051  Sum_probs=148.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhc
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK--KFMTDQETWQELCDLYLSE   81 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~   81 (201)
                      ...+..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++.  ..|.++.++..+|.++...
T Consensus        75 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  154 (252)
T 2ho1_A           75 AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM  154 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc
Confidence            34566788999999999999999999999999999999999999999999999999999  8888899999999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      |++++|+.++++++...|.++.++..+|.++...|   ++++|+..++++++..|+++.++..++.++...|+.++|...
T Consensus       155 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  231 (252)
T 2ho1_A          155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER---EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY  231 (252)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            99999999999999999999999999999999999   999999999999999999999999999999999999998554


Q ss_pred             hHH
Q psy12642        162 KKK  164 (201)
Q Consensus       162 ~~~  164 (201)
                      .++
T Consensus       232 ~~~  234 (252)
T 2ho1_A          232 GLQ  234 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.88  E-value=6.5e-21  Score=137.38  Aligned_cols=156  Identities=11%  Similarity=0.025  Sum_probs=139.5

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE---TWQELCDLY   78 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~   78 (201)
                      -.+..++..|++++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++.+|.++
T Consensus         9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~   88 (225)
T 2yhc_A            9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN   88 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence            345678999999999999999999988764   78999999999999999999999999999999864   788899988


Q ss_pred             Hh------------------cCCHHHHHHHHHHHhhcCCCCHHHH-----------------HHHHHHHHHcCCcccHHH
Q psy12642         79 LS------------------EGDYAKAVFCMEELFLHHPHNHLLH-----------------QRYADILYTQGGLENIEL  123 (201)
Q Consensus        79 ~~------------------~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~~~~~~~~~  123 (201)
                      ..                  .|++++|+..|++++..+|+++.+.                 ..+|.++...|   ++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~---~~~~  165 (225)
T 2yhc_A           89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG---AWVA  165 (225)
T ss_dssp             HHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHH
T ss_pred             HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cHHH
Confidence            76                  6799999999999999999987554                 57889999999   9999


Q ss_pred             HHHHHHHHHcCCcccH---HHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642        124 AISHYLMAINLNEKNI---RALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       124 A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      |+..|+++++..|+++   .+++.++.++.++|+.++|....+
T Consensus       166 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~  208 (225)
T 2yhc_A          166 VVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK  208 (225)
T ss_dssp             HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            9999999999999875   689999999999999999965443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.88  E-value=2e-21  Score=154.61  Aligned_cols=156  Identities=11%  Similarity=-0.015  Sum_probs=148.7

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCHHHHHH
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAK---------NKIPEAIKELTEYLKKFMTDQETWQE   73 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~   73 (201)
                      ....+..+...|++++|+..|+++++.+|+ ..++..+|.++...         |++++|+..++++++.+|+++.+|..
T Consensus       140 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  218 (474)
T 4abn_A          140 WNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYI  218 (474)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            345677789999999999999999999999 79999999999999         99999999999999999999999999


Q ss_pred             HHHHHHhc--------CCHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642         74 LCDLYLSE--------GDYAKAVFCMEELFLHHP---HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus        74 l~~~~~~~--------~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                      +|.+|...        |++++|+.+|++++.++|   +++.+++.+|.++...|   ++++|+..|+++++++|+++.++
T Consensus       219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~a~  295 (474)
T 4abn_A          219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE---SYGEALEGFSQAAALDPAWPEPQ  295 (474)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999        999999999999999999   99999999999999999   99999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhh
Q psy12642        143 YGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       143 ~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ..++.++..+|+.++|....
T Consensus       296 ~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          296 QREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999996543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.87  E-value=9.8e-22  Score=132.94  Aligned_cols=132  Identities=11%  Similarity=-0.045  Sum_probs=120.2

Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642         19 ALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHH   98 (201)
Q Consensus        19 A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   98 (201)
                      +-..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         99 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        99 ~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      |+++.+++.+|.++...|   ++++|+..|+++++++|+++........+...+.
T Consensus        86 p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXG---ELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            999999999999999999   9999999999999999887765444444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.87  E-value=4.1e-21  Score=133.32  Aligned_cols=159  Identities=12%  Similarity=0.043  Sum_probs=140.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-hcC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYL-SEG   82 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~   82 (201)
                      +..+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+.. ..+
T Consensus        10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~   88 (176)
T 2r5s_A           10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQA   88 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhc
Confidence            44667788999999999999999999999999999999999999999999999999999999 8877766665533 333


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHHhhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      ...+|+..+++++..+|+++.+++.+|.++...|   ++++|+..|+++++.+|+.  +.++..++.++...|+.++|..
T Consensus        89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           89 AESPELKRLEQELAANPDNFELACELAVQYNQVG---RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            4456899999999999999999999999999999   9999999999999999975  6699999999999999999966


Q ss_pred             hhHHHH
Q psy12642        161 AKKKEI  166 (201)
Q Consensus       161 ~~~~~~  166 (201)
                      ...+..
T Consensus       166 ~y~~al  171 (176)
T 2r5s_A          166 KYRRQL  171 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.87  E-value=1.3e-19  Score=147.09  Aligned_cols=155  Identities=12%  Similarity=-0.008  Sum_probs=105.1

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      ++..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|.+..+|..+|.+|...|+++
T Consensus       345 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  424 (597)
T 2xpi_A          345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD  424 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            44445555556666666666556666666666667777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +|+..|++++...|++...+..+|.++...|   ++++|++.|+++++..|+++.++..++.++.+.|+.++|.....
T Consensus       425 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  499 (597)
T 2xpi_A          425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLG---NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQ  499 (597)
T ss_dssp             HHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            7777777777777766667777777777777   77777777777777777767777777777777777766655443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.87  E-value=1.1e-19  Score=142.55  Aligned_cols=191  Identities=15%  Similarity=0.150  Sum_probs=159.8

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++
T Consensus       150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  229 (450)
T 2y4t_A          150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL  229 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHH------------HHHHHHcCCcccHHHHHHHHHHHHcCCcccH----HHHHHHHHHHH
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRY------------ADILYTQGGLENIELAISHYLMAINLNEKNI----RALYGLALSCH  150 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~l------------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~  150 (201)
                      |+..|++++..+|++...+..+            |.++...|   ++++|+..|+++++..|+++    ..+..++.++.
T Consensus       230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~  306 (450)
T 2y4t_A          230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG---RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS  306 (450)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999998887666            88999999   99999999999999999874    47888999999


Q ss_pred             HhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        151 QVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       151 ~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      ..|++++|.....+.....  ...+...+...|......+.++..+-+++.+
T Consensus       307 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            9999999977655544221  2244445666676666666666666655543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.87  E-value=2.9e-20  Score=139.72  Aligned_cols=192  Identities=14%  Similarity=0.095  Sum_probs=148.5

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..++..|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~  104 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  104 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHhhc-------------------------------------------------CCCCHHHHHHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLH-------------------------------------------------HPHNHLLHQRYADILYT  114 (201)
Q Consensus        84 ~~~A~~~~~~al~~-------------------------------------------------~~~~~~~~~~la~~~~~  114 (201)
                      +++|+..+++++..                                                 .|.++.++..+|.++..
T Consensus       105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  184 (327)
T 3cv0_A          105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL  184 (327)
T ss_dssp             HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            88887777666554                                                 44556667777777777


Q ss_pred             cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHH
Q psy12642        115 QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLT  192 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~  192 (201)
                      .|   ++++|+..++++++.+|+++.++..++.++...|++++|.....+.....  ...+...+...|......+.++.
T Consensus       185 ~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          185 SN---NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            77   78888888888888888777788888888888888777766554443321  22344456666666666666655


Q ss_pred             HHHhhc
Q psy12642        193 ELMSAL  198 (201)
Q Consensus       193 ~~~~~~  198 (201)
                      .+.+++
T Consensus       262 ~~~~a~  267 (327)
T 3cv0_A          262 QLVRAI  267 (327)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.86  E-value=9.1e-20  Score=147.91  Aligned_cols=193  Identities=16%  Similarity=0.102  Sum_probs=167.3

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|++..++..+|.+|...|+
T Consensus       377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  456 (597)
T 2xpi_A          377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN  456 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC------Cccc-HHHHHHHHHHHHHhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL------NEKN-IRALYGLALSCHQVLTSA  156 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~~~~~  156 (201)
                      +++|+..|++++...|.++..+..+|.++...|   ++++|++.|+++++.      +|++ ..++..++.++...|+.+
T Consensus       457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  533 (597)
T 2xpi_A          457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKS---DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD  533 (597)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence            999999999999999999999999999999999   999999999999988      6664 789999999999999999


Q ss_pred             hhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642        157 KCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLTELMSALQ  199 (201)
Q Consensus       157 ~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~  199 (201)
                      +|....++.....  ...+...+...|......+++...+.+++.
T Consensus       534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA  578 (597)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9977655544321  234555677778877777776666665554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.86  E-value=4.5e-21  Score=128.62  Aligned_cols=131  Identities=15%  Similarity=-0.039  Sum_probs=118.0

Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642         21 EHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  100 (201)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++..+|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642        101 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus       101 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      ++.+++.+|.++...|   ++++|+.+|+++++++|+++........+...++.
T Consensus        85 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLG---DLDGAESGFYSARALAAAQPAHEALAARAGAMLEA  135 (142)
T ss_dssp             CTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999   99999999999999999887665555555554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.86  E-value=6e-20  Score=130.97  Aligned_cols=154  Identities=11%  Similarity=-0.009  Sum_probs=144.5

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHh
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAK-NKIPEAIKELTEYLK--KFMTDQETWQELCDLYLS   80 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~   80 (201)
                      ...+..+...|++++|+..+++++..+|.+..++..+|.++... |++++|+..+++++.  ..|.+..++..+|.++..
T Consensus        46 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  125 (225)
T 2vq2_A           46 LVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK  125 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence            34566788899999999999999999999999999999999999 999999999999999  667778999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHhhhhhhhh
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-KNIRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      .|++++|+..+++++...|.++.++..+|.++...|   ++++|+..++++++..| +++..+..++.++...|+.+.+.
T Consensus       126 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  202 (225)
T 2vq2_A          126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG---QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY  202 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence            999999999999999999999999999999999999   99999999999999999 99999999999999999887774


Q ss_pred             h
Q psy12642        160 A  160 (201)
Q Consensus       160 ~  160 (201)
                      .
T Consensus       203 ~  203 (225)
T 2vq2_A          203 E  203 (225)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=6.2e-21  Score=157.84  Aligned_cols=150  Identities=15%  Similarity=0.059  Sum_probs=142.2

Q ss_pred             hhccCHHHHHHHHHHHH--------hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642         11 FHFFRYEEALEHLETII--------KIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      ...|++++|++.+++++        +.+|++..++..+|.++...|++++|+..++++++.+|++..+|+.+|.++...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            67899999999999999        8899999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ++++|+..|++++.++|+++.++..+|.++...|   ++++ +..|+++++++|++..++++++.++...|++++|....
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g---~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAG---NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT---CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999   9999 99999999999999999999999999999999997755


Q ss_pred             HH
Q psy12642        163 KK  164 (201)
Q Consensus       163 ~~  164 (201)
                      .+
T Consensus       558 ~~  559 (681)
T 2pzi_A          558 DE  559 (681)
T ss_dssp             HT
T ss_pred             Hh
Confidence            43

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.86  E-value=2.1e-20  Score=123.01  Aligned_cols=107  Identities=14%  Similarity=0.130  Sum_probs=103.2

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+++.|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|+++.+|+.+|.++..+|+++
T Consensus        19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   98 (126)
T 4gco_A           19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWS   98 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADIL  112 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~  112 (201)
                      +|+..|+++++++|+++.++..++.++
T Consensus        99 ~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           99 KAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.86  E-value=3.2e-20  Score=139.51  Aligned_cols=152  Identities=11%  Similarity=0.032  Sum_probs=146.0

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      .+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            37788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------------cHHHHHHHHHHHHHhhhhh
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------------NIRALYGLALSCHQVLTSA  156 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~  156 (201)
                      ..+++++...|+++.++..+|.++...|   ++++|+..|++++...|+            ++.++..++.++...|+.+
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMS---QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence            9999999999999999999999999999   999999999999999999            8999999999999999999


Q ss_pred             hhhhhhH
Q psy12642        157 KCSAAKK  163 (201)
Q Consensus       157 ~a~~~~~  163 (201)
                      +|.....
T Consensus       304 ~A~~~~~  310 (327)
T 3cv0_A          304 LVELTYA  310 (327)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            9965444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.86  E-value=1.4e-19  Score=133.07  Aligned_cols=150  Identities=15%  Similarity=0.107  Sum_probs=121.9

Q ss_pred             hhhhccCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          9 GCFHFFRYEEALEHLETIIKI----DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      .+...|++++|+..|+++++.    +|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            355678888888888888886    3567788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ++|+.+|++++..+|.++.++..+|.++...|   ++++|+..|+++++.+|+++.....++.+ ...|+.++|....
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~  167 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGG---RDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL  167 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH
Confidence            88888888888888888888888888888888   88888888888888888877655555444 4557776665433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.86  E-value=7.4e-20  Score=130.37  Aligned_cols=123  Identities=17%  Similarity=0.150  Sum_probs=116.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE----------------LCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      ++..+...|..+...|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|++++.
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46677889999999999999999999999999999999999                99999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         97 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        97 ~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      .+|+++.++..+|.++...|   ++++|+..|+++++++|+++.+++++|.+|...|+...+
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~  141 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRG---QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK  141 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999   999999999999999999999999999999887765433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.85  E-value=4.9e-21  Score=158.48  Aligned_cols=147  Identities=10%  Similarity=-0.047  Sum_probs=138.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|+
T Consensus       437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~  516 (681)
T 2pzi_A          437 LMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN  516 (681)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      +++ +..|++++..+|+++.+++.+|.++...|   ++++|+..|+++++++|++..++++++.++...++
T Consensus       517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEG---DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC---CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            999 99999999999999999999999999999   99999999999999999999999999999876554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.85  E-value=3e-20  Score=150.74  Aligned_cols=150  Identities=13%  Similarity=-0.018  Sum_probs=125.1

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCME   92 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   92 (201)
                      .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++..+|++++|+.+++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh---hhhhhhhhhhHHH
Q psy12642         93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV---LTSAKCSAAKKKE  165 (201)
Q Consensus        93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~  165 (201)
                      +++..+|+++.++..+|.++...|   ++++|+..|+++++.+|+++.++..++.++...   |+.++|.....+.
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAG---QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            999999999999999999999999   999999999999999999999999999999999   9888886655443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.85  E-value=2.6e-20  Score=139.07  Aligned_cols=159  Identities=12%  Similarity=0.004  Sum_probs=138.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+..+...++
T Consensus       121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~  200 (287)
T 3qou_A          121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA  200 (287)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence            34556678889999999999999999999999999999999999999999999999999999766666667777888888


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      .++|+..+++++..+|+++.+++.+|.++...|   ++++|+..|.++++.+|++  ..++..++.++...|+.+++...
T Consensus       201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g---~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~  277 (287)
T 3qou_A          201 DTPEIQQLQQQVAENPEDAALATQLALQLHQVG---RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX  277 (287)
T ss_dssp             SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence            899999999999999999999999999999999   9999999999999999987  88999999999999988888655


Q ss_pred             hHHH
Q psy12642        162 KKKE  165 (201)
Q Consensus       162 ~~~~  165 (201)
                      ..+.
T Consensus       278 ~r~a  281 (287)
T 3qou_A          278 YRRQ  281 (287)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.85  E-value=6.8e-21  Score=145.30  Aligned_cols=146  Identities=14%  Similarity=0.114  Sum_probs=139.6

Q ss_pred             hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHH
Q psy12642         12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---------------QETWQELCD   76 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~   76 (201)
                      ..+++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++...|++               ..++..+|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45678888889999998999999999999999999999999999999999999999               689999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642         77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA  156 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  156 (201)
                      ++..+|++++|+.+|++++.++|+++.+++.+|.++...|   ++++|+..|+++++++|++..++..++.++...|+..
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN---DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999   9999999999999999999999999999999999998


Q ss_pred             hhhh
Q psy12642        157 KCSA  160 (201)
Q Consensus       157 ~a~~  160 (201)
                      ++..
T Consensus       282 ~a~~  285 (336)
T 1p5q_A          282 AREK  285 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8844

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=1.7e-19  Score=135.01  Aligned_cols=142  Identities=17%  Similarity=0.087  Sum_probs=69.3

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHhcCCHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC--DLYLSEGDYA   85 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~   85 (201)
                      ..+...|++++|+..+++     |.++.++..+|.++..+|++++|+..++++++.+|++.......+  .++...|+++
T Consensus       109 ~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~  183 (291)
T 3mkr_A          109 SIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ  183 (291)
T ss_dssp             HHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred             HHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHH
Confidence            334444444444444444     444444445555555555555555555555555554432222211  2222334555


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhh
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK  157 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  157 (201)
                      +|+..|++++..+|+++.++..+|.++...|   ++++|+..|+++++.+|+++.++.+++.++...|+..+
T Consensus       184 eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~e  252 (291)
T 3mkr_A          184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQG---RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE  252 (291)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence            5555555555555555555555555555555   55555555555555555555555555555555555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.85  E-value=9.9e-20  Score=133.84  Aligned_cols=192  Identities=8%  Similarity=-0.100  Sum_probs=162.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus        47 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  126 (275)
T 1xnf_A           47 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  126 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +++|+.+|++++..+|+++......+.+ ...|   ++++|+..+.+++...|++...+ .++.++...++..+|.....
T Consensus       127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~---~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~  201 (275)
T 1xnf_A          127 DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKL---DEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLK  201 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHH---CHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhc---CHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999998777666654 5668   89999999999999999876654 46777777777777755444


Q ss_pred             HHHHHHh------HHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        164 KEISKQM------MWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       164 ~~~~~~~------~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      +......      ..+...+...|......++++..+.+++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            4332211      355566788888888888898888888765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.85  E-value=1.5e-19  Score=144.64  Aligned_cols=153  Identities=15%  Similarity=-0.019  Sum_probs=104.2

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+...|++++|+..+++++..+|. +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus       249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          249 TGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK  327 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Confidence            334455666677777777777766666 6666666666666677777777777776666666666666777777777777


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      +|+..|++++..+|.++.++..+|.++...|   ++++|+..|+++++.+|+++.++..++.++...|++++|....
T Consensus       328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQG---KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            7777777777666666666666777766666   6777777777777666666666666677776666666665433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.85  E-value=1.9e-19  Score=144.13  Aligned_cols=156  Identities=14%  Similarity=0.137  Sum_probs=143.7

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+
T Consensus       280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  359 (537)
T 3fp2_A          280 IFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK  359 (537)
T ss_dssp             HHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH------HHHHHHHHHHHh-----
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR------ALYGLALSCHQV-----  152 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~-----  152 (201)
                      +++|+..+++++..+|+++.++..+|.++...|   ++++|+..|+++++..|++..      .+..++.++...     
T Consensus       360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  436 (537)
T 3fp2_A          360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRG---DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP  436 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999   999999999999999887553      356677888888     


Q ss_pred             -----hhhhhhhhhh
Q psy12642        153 -----LTSAKCSAAK  162 (201)
Q Consensus       153 -----~~~~~a~~~~  162 (201)
                           |++++|....
T Consensus       437 ~~~~~~~~~~A~~~~  451 (537)
T 3fp2_A          437 TQLDEEKFNAAIKLL  451 (537)
T ss_dssp             --CCHHHHHHHHHHH
T ss_pred             hhhhHhHHHHHHHHH
Confidence                 8888884433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.84  E-value=5.2e-20  Score=146.41  Aligned_cols=189  Identities=13%  Similarity=-0.041  Sum_probs=155.3

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      ..+..+...|++++|+..++++++.+|. +.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY  320 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence            3556678889999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      ++|+..+++++..+|.++.++..+|.++...|   ++++|+..|+++++..|+++.++..++.++...|++++|.....+
T Consensus       321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  397 (514)
T 2gw1_A          321 DQAGKDFDKAKELDPENIFPYIQLACLAYREN---KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL  397 (514)
T ss_dssp             THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999   999999999999999999999999999999999999998775554


Q ss_pred             HHHHHhHH--------HHHHHHHHHHh---hhcchHHHHHHHhh
Q psy12642        165 EISKQMMW--------VSKHLARQYEE---QQGNTETLTELMSA  197 (201)
Q Consensus       165 ~~~~~~~~--------~~~~l~~~y~~---~~~~~~~~~~~~~~  197 (201)
                      ........        +...+...|..   ....+.++..+.++
T Consensus       398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a  441 (514)
T 2gw1_A          398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA  441 (514)
T ss_dssp             HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence            43322211        34445555555   44444444444433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.7e-19  Score=118.17  Aligned_cols=118  Identities=13%  Similarity=0.022  Sum_probs=110.9

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642         31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD  110 (201)
Q Consensus        31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  110 (201)
                      |..+..+..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+++++.++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHcCC------cccHHHHHHHHHHHHH
Q psy12642        111 ILYTQGGLENIELAISHYLMAINLN------EKNIRALYGLALSCHQ  151 (201)
Q Consensus       111 ~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~  151 (201)
                      ++...|   ++++|+..|+++++++      |++..++..+..+...
T Consensus        81 ~~~~~~---~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVK---EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHh---CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999   9999999999999999      8888888888887664

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.84  E-value=5.2e-20  Score=127.56  Aligned_cols=131  Identities=15%  Similarity=0.109  Sum_probs=120.5

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcCCH--H
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL-YLSEGDY--A   85 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~--~   85 (201)
                      .+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+ +...|++  +
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            466789999999999999999999999999999999999999999999999999999999999999999 8899999  9


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                      +|+.++++++..+|+++.+++.+|.++...|   ++++|+..|+++++.+|+++...
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQA---NYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCccHH
Confidence            9999999999999999999999999999999   99999999999999999875443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.84  E-value=1.6e-19  Score=132.64  Aligned_cols=153  Identities=12%  Similarity=0.070  Sum_probs=137.1

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhcCCCHHHH-
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDET---NTAARKRKICILKA--------KNKIPEAIKELTEYLKKFMTDQETW-   71 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~-   71 (201)
                      +..+..++..|++++|+..|+++++..|+   .+.+++.+|.++..        .|++++|+..|++++..+|+++.++ 
T Consensus        56 ~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  135 (261)
T 3qky_A           56 FYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDD  135 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHH
Confidence            44667789999999999999999999874   46889999999999        9999999999999999999986655 


Q ss_pred             ----------------HHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHc----------CCcccHH
Q psy12642         72 ----------------QELCDLYLSEGDYAKAVFCMEELFLHHPH---NHLLHQRYADILYTQ----------GGLENIE  122 (201)
Q Consensus        72 ----------------~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~----------~~~~~~~  122 (201)
                                      +.+|.+|...|++++|+..|++++...|+   .+.+++.+|.++...          |   +++
T Consensus       136 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~---~~~  212 (261)
T 3qky_A          136 ATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE---RYR  212 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH---HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc---hHH
Confidence                            78899999999999999999999999998   467899999999977          7   999


Q ss_pred             HHHHHHHHHHcCCcccH---HHHHHHHHHHHHhhhhhhhh
Q psy12642        123 LAISHYLMAINLNEKNI---RALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus       123 ~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~  159 (201)
                      +|+..|+++++..|+++   .+...++.++..+++.+++.
T Consensus       213 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          213 RAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999884   57778888888888887663

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.84  E-value=6e-19  Score=115.68  Aligned_cols=132  Identities=20%  Similarity=0.268  Sum_probs=121.7

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      ....+..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence            34456778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      ++++|+..+++++...|.++..+..+|.++...|   ++++|+.++++++..+|+
T Consensus        84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc---cHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999999   999999999999988876

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.83  E-value=1.6e-19  Score=122.27  Aligned_cols=114  Identities=11%  Similarity=0.092  Sum_probs=107.6

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      .+.++..|+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|
T Consensus        34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  113 (150)
T 4ga2_A           34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKND  113 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         83 DYAKAVFC-MEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        83 ~~~~A~~~-~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      ++++|... ++++++++|+++.++..++.++...|
T Consensus       114 ~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A          114 VTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             SSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            99887765 59999999999999999999988877

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.1e-19  Score=144.56  Aligned_cols=151  Identities=16%  Similarity=0.119  Sum_probs=77.5

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++
T Consensus       277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  356 (514)
T 2gw1_A          277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD  356 (514)
T ss_dssp             HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHH
Confidence            33444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH------HHHHHHHHHHH---hhhhhh
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR------ALYGLALSCHQ---VLTSAK  157 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~~~~~~  157 (201)
                      |+..+++++...|.++.++..+|.++...|   ++++|+..|++++...|+++.      ++..++.++..   .|++++
T Consensus       357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  433 (514)
T 2gw1_A          357 CETLFSEAKRKFPEAPEVPNFFAEILTDKN---DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE  433 (514)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence            555555555555555555555555555555   555555555555555444432      45555555555   555555


Q ss_pred             hhh
Q psy12642        158 CSA  160 (201)
Q Consensus       158 a~~  160 (201)
                      |..
T Consensus       434 A~~  436 (514)
T 2gw1_A          434 ATN  436 (514)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=6.1e-19  Score=131.59  Aligned_cols=160  Identities=17%  Similarity=0.094  Sum_probs=142.2

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHh--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIK--------IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------MTD   67 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~   67 (201)
                      ...+..+...|++++|+..++++++        ..|....++..+|.++...|++++|+..+++++...        |..
T Consensus        31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  110 (311)
T 3nf1_A           31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV  110 (311)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence            3456778899999999999999999        478888999999999999999999999999999873        445


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC-----
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELFLHH--------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINL-----  134 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~-----  134 (201)
                      ..++..+|.++...|++++|+.++++++...        |....++..+|.++...|   ++++|+.+|++++..     
T Consensus       111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~  187 (311)
T 3nf1_A          111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG---KYEEVEYYYQRALEIYQTKL  187 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHh
Confidence            7789999999999999999999999999874        455678999999999999   999999999999998     


Q ss_pred             ---CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        135 ---NEKNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       135 ---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                         .|....++..++.++...|++++|.....+..
T Consensus       188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               78888899999999999999999977554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.83  E-value=9.8e-18  Score=123.69  Aligned_cols=183  Identities=12%  Similarity=0.001  Sum_probs=134.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYL   79 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~   79 (201)
                      +..+..+...|++++|+.+|+++++  |.++.++..+|.++..    .+++++|+..++++++..  ++.++..+|.+|.
T Consensus        10 ~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~   85 (273)
T 1ouv_A           10 VGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYY   85 (273)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh
Confidence            3455667778888888888888887  6677888888888888    888888888888888764  7788888888888


Q ss_pred             h----cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         80 S----EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        80 ~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      .    .+++++|+.+|++++..  +++.++..+|.++..    .+   ++++|+.+|+++++.+  ++.++..++.++..
T Consensus        86 ~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~---~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           86 SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTR---DFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC---CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCccc---CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            8    88888888888888876  377888888888887    77   8888888888888765  46677888888887


Q ss_pred             ----hhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHh----hhcchHHHHHHHhh
Q psy12642        152 ----VLTSAKCSAAKKKEISKQMMWVSKHLARQYEE----QQGNTETLTELMSA  197 (201)
Q Consensus       152 ----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~----~~~~~~~~~~~~~~  197 (201)
                          .++.++|....++....-...+...+...|..    ....++++..+.++
T Consensus       159 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a  212 (273)
T 1ouv_A          159 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA  212 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence                77777776655555433333444455555655    44444454444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.83  E-value=5.8e-18  Score=126.61  Aligned_cols=153  Identities=12%  Similarity=0.013  Sum_probs=135.4

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKI--DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ++..+...+++++|++.+++++..  +|+++.+++.+|.++...|++++|+..+++     |+++.++..+|.++..+|+
T Consensus        71 la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~  145 (291)
T 3mkr_A           71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDR  145 (291)
T ss_dssp             HHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC
Confidence            455677788999999999999876  599999999999999999999999999988     8999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHH--HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYA--DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la--~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      +++|+..|++++..+|++.......+  .++...|   ++++|+..|+++++.+|+++.++++++.++...|++++|...
T Consensus       146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~---~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~  222 (291)
T 3mkr_A          146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE---KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV  222 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999875544433  3333457   999999999999999999999999999999999999999776


Q ss_pred             hHHHH
Q psy12642        162 KKKEI  166 (201)
Q Consensus       162 ~~~~~  166 (201)
                      ..+..
T Consensus       223 l~~al  227 (291)
T 3mkr_A          223 LQEAL  227 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=6.2e-19  Score=131.82  Aligned_cols=155  Identities=14%  Similarity=0.049  Sum_probs=134.9

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDE------TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELC   75 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~   75 (201)
                      ..+...|++++|+..|+++++..+      ....++..+|.++...|++++|+..+++++.+.|..      ..++..+|
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346678999999999999998743      235789999999999999999999999999987654      45888999


Q ss_pred             HHHHhc-CCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH-------H
Q psy12642         76 DLYLSE-GDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR-------A  141 (201)
Q Consensus        76 ~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~  141 (201)
                      .+|... |++++|+.+|++++.+.|.+      ..++..+|.++...|   ++++|+.+|++++++.|++..       +
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~  201 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG---QYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            999996 99999999999999988754      457889999999999   999999999999999987543       6


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        142 LYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       142 ~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      +.+++.|+..+|++.+|.....+.
T Consensus       202 ~~~lg~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          202 FLKKGLCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            789999999999999997766554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.82  E-value=8.2e-19  Score=114.61  Aligned_cols=125  Identities=15%  Similarity=0.071  Sum_probs=119.1

Q ss_pred             hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHH
Q psy12642         28 KIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR  107 (201)
Q Consensus        28 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  107 (201)
                      +.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.++++++..+|+++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh
Q psy12642        108 YADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS  155 (201)
Q Consensus       108 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  155 (201)
                      +|.++...|   ++++|+.+|+++++.+|+++.++..++.++...|++
T Consensus        86 ~~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           86 MGLALSSLN---KHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC---CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999   999999999999999999999999999999998875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.82  E-value=9e-19  Score=128.77  Aligned_cols=152  Identities=16%  Similarity=0.082  Sum_probs=130.0

Q ss_pred             hhccCHHHHHHHHHHHHh--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHH
Q psy12642         11 FHFFRYEEALEHLETIIK--------IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------MTDQETWQEL   74 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l   74 (201)
                      ...|++++|+..|+++++        .+|..+.++..+|.++...|++++|+..+++++...        |....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            446777788888888877        347778899999999999999999999999999874        4556788999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--------Cccc
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLH--------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--------NEKN  138 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~  138 (201)
                      |.++...|++++|+.++++++..        +|....++..+|.++...|   ++++|+.+|+++++.        .|..
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~  168 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG---KAEEVEYYYRRALEIYATRLGPDDPNV  168 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            99999999999999999999987        4666778999999999999   999999999999998        7888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        139 IRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       139 ~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      ..++..++.++...|++++|.....+.
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            889999999999999999997655433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.82  E-value=1.4e-18  Score=120.08  Aligned_cols=134  Identities=16%  Similarity=0.038  Sum_probs=127.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus        46 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  125 (186)
T 3as5_A           46 LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR  125 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      +++|+.++++++...|.++.++..+|.++...|   ++++|+.+++++++.+|++..
T Consensus       126 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          126 FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG---RHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCchh
Confidence            999999999999999999999999999999999   999999999999999887643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=3.2e-18  Score=128.83  Aligned_cols=148  Identities=8%  Similarity=-0.013  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642         17 EEALEHLETIIK-IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE-TWQELCDLYLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        17 ~~A~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a   94 (201)
                      ++|+..|+++++ .+|++..+|..+|.++...|++++|...|+++++..|.++. +|..+|.++.+.|++++|+..|+++
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999 69999999999999999999999999999999999999987 9999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy12642         95 FLHHPHNHLLHQRYADILYT-QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS  167 (201)
Q Consensus        95 l~~~~~~~~~~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  167 (201)
                      +...|.+..++...+..... .|   ++++|+..|+++++.+|+++..|..++.++...|+.++|.....+...
T Consensus       161 ~~~~p~~~~~~~~~a~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          161 REDARTRHHVYVTAALMEYYCSK---DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HTSTTCCTHHHHHHHHHHHHTSC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            99999988888777666443 68   999999999999999999999999999999999999999776655544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.82  E-value=9.1e-20  Score=128.72  Aligned_cols=149  Identities=18%  Similarity=0.114  Sum_probs=130.5

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----------------HHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ----------------ETW   71 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~   71 (201)
                      ......|+++++.+.++......+.....+..+|..+...|++++|+..|.+++...|.++                .++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            3445568888888888877777778889999999999999999999999999999999887                899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      ..+|.++...|++++|+.++++++..+|.++.+++.+|.++...|   ++++|+..|+++++++|+++.++..++.++..
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG---FLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999   99999999999999999999999999999999


Q ss_pred             hhhhhhhh
Q psy12642        152 VLTSAKCS  159 (201)
Q Consensus       152 ~~~~~~a~  159 (201)
                      .++..++.
T Consensus       169 ~~~~~~~~  176 (198)
T 2fbn_A          169 LKEARKKD  176 (198)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHH
Confidence            99887774

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.82  E-value=1e-18  Score=114.79  Aligned_cols=123  Identities=20%  Similarity=0.123  Sum_probs=117.6

Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642         29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY  108 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  108 (201)
                      ..|.++..+..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+.++++++..+|.++.++..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642        109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus       109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      |.++...|   ++++|+.+|+++++.+|++..++..++.++...|+
T Consensus        91 a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEAMK---DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHh---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999   99999999999999999999999999999988764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.82  E-value=7.2e-19  Score=120.49  Aligned_cols=124  Identities=14%  Similarity=0.048  Sum_probs=112.6

Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642         29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY  108 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  108 (201)
                      .++.++..+..+|.++...|++++|+..|++++..+|+++.+|..+|.+|...|++++|+.+|++++.++|+++.+++.+
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHH--HHHHHHHhhhh
Q psy12642        109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYG--LALSCHQVLTS  155 (201)
Q Consensus       109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~  155 (201)
                      |.++...|   ++++|+.+|+++++++|++..+++.  +..+..+.++.
T Consensus        86 g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           86 GLARFDMA---DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcc---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999   9999999999999999998875554  44445555544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.82  E-value=5.6e-20  Score=145.66  Aligned_cols=147  Identities=17%  Similarity=0.150  Sum_probs=135.2

Q ss_pred             hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHH
Q psy12642         12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---------------QETWQELCD   76 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~   76 (201)
                      ..+++++|+..++.++...|.....+..+|.+++..|++++|+..|++++...|.+               ..+|..+|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888899999999999999999999999999999999999998               689999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642         77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA  156 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  156 (201)
                      +|..+|++++|+.+|++++.++|+++.+++.+|.++...+   ++++|+..|+++++++|++..++..++.++..+++..
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN---EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999   9999999999999999999999999999999999988


Q ss_pred             hhhhh
Q psy12642        157 KCSAA  161 (201)
Q Consensus       157 ~a~~~  161 (201)
                      ++...
T Consensus       403 ~a~~~  407 (457)
T 1kt0_A          403 ERDRR  407 (457)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.81  E-value=5.1e-20  Score=124.79  Aligned_cols=109  Identities=12%  Similarity=0.045  Sum_probs=102.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642         55 KELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus        55 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                      ..+++++..+|+++.+++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|   ++++|+..|++++++
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g---~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE---QFQQAADLYAVAFAL   99 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---cHHHHHHHHHHHHhh
Confidence            44566778899999999999999999999999999999999999999999999999999999   999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       135 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      +|+++.+++++|.|+..+|++++|.....+..
T Consensus       100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al  131 (151)
T 3gyz_A          100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVI  131 (151)
T ss_dssp             SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999977665554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.80  E-value=5.2e-18  Score=120.52  Aligned_cols=136  Identities=13%  Similarity=0.087  Sum_probs=123.2

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      ..+..++..|++++|+..|++++  +| ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence            34567888999999999999986  33 6789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCH----------------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642         85 AKAVFCMEELFLHHPHNH----------------LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  146 (201)
                      ++|+..|++++...|.+.                .+++.+|.++...|   ++++|+..|+++++.+|++.......+
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a  162 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE---EWKKAEEQLALATSMKSEPRHSKIDKA  162 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCcccccchHHHH
Confidence            999999999999888776                89999999999999   999999999999999997654433333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.80  E-value=3.7e-18  Score=113.03  Aligned_cols=125  Identities=13%  Similarity=0.015  Sum_probs=114.4

Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642         29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY  108 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  108 (201)
                      .+|.++..+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHcCCcc-----cHHHHHHHHHHHHHhhhhh
Q psy12642        109 ADILYTQGGLENIELAISHYLMAINLNEK-----NIRALYGLALSCHQVLTSA  156 (201)
Q Consensus       109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~  156 (201)
                      |.++...|   ++++|+..|+++++++|+     +......+..+........
T Consensus        84 ~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  133 (137)
T 3q49_B           84 GQCQLEME---SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI  133 (137)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh---hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999   999999999999999998     6777777777766655433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.80  E-value=7e-17  Score=119.11  Aligned_cols=183  Identities=9%  Similarity=0.029  Sum_probs=154.8

Q ss_pred             HHHHhhhh----ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy12642          5 VYIIGCFH----FFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCD   76 (201)
Q Consensus         5 ~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~   76 (201)
                      ..+..+..    .+++++|+.+|+++++.+  ++.++..+|.++..    .+++++|+..+++++..  +++.++..+|.
T Consensus        43 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  118 (273)
T 1ouv_A           43 NLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGG  118 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHH
Confidence            34556777    899999999999999875  78999999999999    99999999999999986  48999999999


Q ss_pred             HHHh----cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         77 LYLS----EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLALS  148 (201)
Q Consensus        77 ~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  148 (201)
                      +|..    .+++++|+.+|++++...  ++.++..+|.++..    .+   ++++|+.+|+++++.+  ++.+++.++.+
T Consensus       119 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~---~~~~A~~~~~~a~~~~--~~~a~~~lg~~  191 (273)
T 1ouv_A          119 IYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPK---DLKKALASYDKACDLK--DSPGCFNAGNM  191 (273)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence            9999    999999999999999876  68889999999998    88   9999999999999874  57889999999


Q ss_pred             HHH----hhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHh----hhcchHHHHHHHhhc
Q psy12642        149 CHQ----VLTSAKCSAAKKKEISKQMMWVSKHLARQYEE----QQGNTETLTELMSAL  198 (201)
Q Consensus       149 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~----~~~~~~~~~~~~~~~  198 (201)
                      |..    .+++++|....++....-...+...+...|..    ....++++..+.+++
T Consensus       192 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~  249 (273)
T 1ouv_A          192 YHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC  249 (273)
T ss_dssp             HHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence            999    99999998877666554445666677777876    555555666555544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.80  E-value=7.6e-18  Score=130.16  Aligned_cols=157  Identities=9%  Similarity=-0.046  Sum_probs=136.4

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKI------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQ   72 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~   72 (201)
                      .+..++..|++++|+..|++++..      .+....++..+|.++...|++++|+..+.++++..+..       ..++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            556678899999999999999986      23456889999999999999999999999999975443       45888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc-----CC-cccHH
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHYLMAIN-----LN-EKNIR  140 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~  140 (201)
                      .+|.+|...|++++|+.+|++++...|..      ..++..+|.++...|   ++++|+.+|+++++     .+ |..+.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS---QYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            99999999999999999999999875532      247899999999999   99999999999999     67 88899


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        141 ALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      ++.++|.++...|++++|.....+.
T Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          266 AYFLITQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999997654433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.80  E-value=2.6e-18  Score=126.25  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=116.0

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------FMTDQ   68 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~   68 (201)
                      ..+..+...|++++|+..++++++.        +|....++..+|.++...|++++|+..+++++..        .|...
T Consensus        48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  127 (283)
T 3edt_B           48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA  127 (283)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            4567788899999999999999977        4777899999999999999999999999999987        35567


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLH--------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                      .++..+|.++...|++++|+.++++++..        .|....++..+|.++...|   ++++|+.+|+++++.
T Consensus       128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG---KYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Confidence            88999999999999999999999999998        6667788999999999999   999999999999986

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.80  E-value=1.4e-17  Score=107.84  Aligned_cols=121  Identities=23%  Similarity=0.275  Sum_probs=112.6

Q ss_pred             Cccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642         30 DETN-TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY  108 (201)
Q Consensus        30 ~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  108 (201)
                      +|.. ..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4544 788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642        109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus       109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      |.++...|   ++++|+.+|+++++.+|+++.++..++.++...|
T Consensus        84 a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           84 GNAYYKQG---DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999   9999999999999999999999999999987754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.79  E-value=4.1e-18  Score=138.22  Aligned_cols=140  Identities=8%  Similarity=-0.038  Sum_probs=132.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus        27 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  106 (568)
T 2vsy_A           27 LMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ  106 (568)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence            44567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc---CCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQ---GGLENIELAISHYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  146 (201)
                      +++|+..|+++++.+|+++.++..+|.++...   |   ++++|+..++++++.+|++...+..++
T Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          107 AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR---ALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT---THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc---cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            99999999999999999999999999999999   8   999999999999999998776666555

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.79  E-value=3.1e-17  Score=111.72  Aligned_cols=127  Identities=12%  Similarity=0.001  Sum_probs=112.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL  112 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  112 (201)
                      .+..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH--HHHhhhhhhhhhhh
Q psy12642        113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALS--CHQVLTSAKCSAAK  162 (201)
Q Consensus       113 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~  162 (201)
                      ...|   ++++|+.+|+++++.+|++..++..++.+  +...|++++|....
T Consensus        92 ~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~  140 (166)
T 1a17_A           92 MALG---KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  140 (166)
T ss_dssp             HHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999   99999999999999999988888555554  77778888875543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=1.6e-17  Score=125.03  Aligned_cols=161  Identities=9%  Similarity=-0.027  Sum_probs=143.6

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTA-ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS-   80 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-   80 (201)
                      ++.++..+...|++++|...|+++++.+|.++. +|..+|.++...|++++|+..|+++++..|.+..+|...+.+... 
T Consensus       102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  181 (308)
T 2ond_A          102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            455777788899999999999999999999886 999999999999999999999999999999998888877766443 


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC---Ccc-cHHHHHHHHHHHHHhhhhh
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL---NEK-NIRALYGLALSCHQVLTSA  156 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~~~~~  156 (201)
                      .|++++|+.+|++++..+|+++.++..+|.++...|   ++++|+..|++++..   .|+ ....|..++......|+.+
T Consensus       182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~  258 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  258 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            799999999999999999999999999999999999   999999999999995   564 7889999999999999998


Q ss_pred             hhhhhhHHHH
Q psy12642        157 KCSAAKKKEI  166 (201)
Q Consensus       157 ~a~~~~~~~~  166 (201)
                      .+.....+..
T Consensus       259 ~a~~~~~~a~  268 (308)
T 2ond_A          259 SILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8865444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.79  E-value=7.8e-18  Score=115.06  Aligned_cols=123  Identities=14%  Similarity=0.087  Sum_probs=113.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKK------------------FMTDQETWQELCDLYLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   94 (201)
                      ....+...|..++..|++++|+..|.+++..                  .|.+..++..+|.+|..+|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4567888999999999999999999999998                  7777789999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHHhhhhhhh
Q psy12642         95 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI-RALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        95 l~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a  158 (201)
                      +.++|+++.+++.+|.++...|   ++++|+..|+++++++|+++ .+...+..+....++..+.
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAW---KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HhcCCcchHHHHHHHHHHHHHh---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999   99999999999999999998 6778888888887766655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.79  E-value=2.6e-17  Score=105.53  Aligned_cols=115  Identities=19%  Similarity=0.064  Sum_probs=106.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL  112 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  112 (201)
                      .+..+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642        113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus       113 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                      ...|   ++++|+..|+++++.+|+++.++..++.+..
T Consensus        83 ~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           83 EFLN---RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHh---hHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            9999   9999999999999999999999888887753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.78  E-value=2.3e-17  Score=112.40  Aligned_cols=128  Identities=14%  Similarity=0.120  Sum_probs=117.5

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus        17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~   96 (166)
T 1a17_A           17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   96 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHH--HHHcCCcccHHHHHHHHHHHHcC
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADI--LYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                      +++|+.+|++++..+|.+...+..++.+  +...|   ++++|+..+.++...
T Consensus        97 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           97 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK---AFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHcccchHHH
Confidence            9999999999999999999888555544  77888   999999999987654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.78  E-value=1.6e-17  Score=123.89  Aligned_cols=166  Identities=11%  Similarity=-0.015  Sum_probs=147.4

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      .|.+...+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++.......+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999997777777777


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----hHHHHHHHHHHHHhhh
Q psy12642        110 DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ----MMWVSKHLARQYEEQQ  185 (201)
Q Consensus       110 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~y~~~~  185 (201)
                      ..+...+   +.++|+..|++++..+|+++.+++.++.++...|+.++|..........-    ...+...+...|....
T Consensus       193 ~~l~~~~---~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          193 IELLXQA---ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHH---TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHhhc---ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            7788888   88899999999999999999999999999999999999988766655432    2456777888899888


Q ss_pred             cchHHHHHHHhhc
Q psy12642        186 GNTETLTELMSAL  198 (201)
Q Consensus       186 ~~~~~~~~~~~~~  198 (201)
                      +.++++..+.+++
T Consensus       270 ~~~~a~~~~r~al  282 (287)
T 3qou_A          270 TGDALASXYRRQL  282 (287)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            8888777776654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.78  E-value=1e-17  Score=130.07  Aligned_cols=191  Identities=9%  Similarity=0.017  Sum_probs=155.3

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNT----AARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQEL   74 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l   74 (201)
                      ..+..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+..+++++..      .|....++..+
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            355668889999999999999999999987    57889999999999999999999999987      46667899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHcCCccc-----------------HHHHHHHHHHH
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLH------HPHNHLLHQRYADILYTQGGLEN-----------------IELAISHYLMA  131 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~-----------------~~~A~~~~~~a  131 (201)
                      |.+|...|++++|+.++++++..      .|....++..+|.++...|   +                 +++|+.+++++
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  209 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG---KHLGQRNPGKFGDDVKEALTRAVEFYQEN  209 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH---HHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC---cccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999988      4556678999999999999   9                 99999999999


Q ss_pred             HcCC------cccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh--------HHHHHHHHHHHHhhhcchHHHHHHHhh
Q psy12642        132 INLN------EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQM--------MWVSKHLARQYEEQQGNTETLTELMSA  197 (201)
Q Consensus       132 l~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~l~~~y~~~~~~~~~~~~~~~~  197 (201)
                      +++.      |....++..++.++...|++++|.....+......        ..+...+...|......++++..+.++
T Consensus       210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (411)
T 4a1s_A          210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT  289 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            8764      34556899999999999999999775554432211        124455666677666666655555444


Q ss_pred             c
Q psy12642        198 L  198 (201)
Q Consensus       198 ~  198 (201)
                      +
T Consensus       290 l  290 (411)
T 4a1s_A          290 L  290 (411)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.78  E-value=8.6e-18  Score=125.32  Aligned_cols=156  Identities=13%  Similarity=0.117  Sum_probs=134.0

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------MTDQ   68 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~   68 (201)
                      ..+..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++...        |...
T Consensus        74 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  153 (311)
T 3nf1_A           74 ILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA  153 (311)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            4566788899999999999999987        47778999999999999999999999999999874        4456


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC------
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLH--------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL------  134 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~------  134 (201)
                      .++..+|.++...|++++|+.++++++..        .|....++..+|.++...|   ++++|+.+|+++++.      
T Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~  230 (311)
T 3nf1_A          154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG---KFKQAETLYKEILTRAHEREF  230 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcC
Confidence            78899999999999999999999999988        6666778999999999999   999999999999974      


Q ss_pred             -------------------------------------------CcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642        135 -------------------------------------------NEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       135 -------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                                                                 .|....++..++.+|...|++++|....+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  302 (311)
T 3nf1_A          231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE  302 (311)
T ss_dssp             C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                                                       45566677777777777777777754433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.78  E-value=7.7e-18  Score=110.76  Aligned_cols=110  Identities=11%  Similarity=0.093  Sum_probs=97.2

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH-------HH
Q psy12642         32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH-------LL  104 (201)
Q Consensus        32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~  104 (201)
                      +...++..+|..++..|++++|+..|+++++++|+++.+|..+|.+|..+|++++|+..+++++.++|++.       .+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            44567888999999999999999999999999999999999999999999999999999999999887653       47


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642        105 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL  145 (201)
Q Consensus       105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  145 (201)
                      +..+|.++...+   ++++|+++|++++...|+ +.....+
T Consensus        86 ~~~lg~~~~~~~---~~~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A           86 MSRAGNAFQKQN---DLSLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence            888999999999   999999999999998876 4444333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.6e-17  Score=108.64  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=104.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|+
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~   87 (126)
T 3upv_A            8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE   87 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLHH------PHNHLLHQRYADILYT  114 (201)
Q Consensus        84 ~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~  114 (201)
                      +++|+..|++++.++      |.+..++..++.+...
T Consensus        88 ~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           88 YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999999999999      9999988888877644

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=3.6e-17  Score=129.21  Aligned_cols=194  Identities=16%  Similarity=0.099  Sum_probs=142.8

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKI---------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------MTDQ   68 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~   68 (201)
                      .+..+..+|++++|++.|+++++.         +|....++..+|.+|..+|++++|+..+++++.+.        +..+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            345567889999999999999875         56677889999999999999999999999998763        3457


Q ss_pred             HHHHHHHHHHHh--cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642         69 ETWQELCDLYLS--EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus        69 ~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  146 (201)
                      .++..+|.++..  .++|++|+.+|++++.++|+++.++..+|.+++..+...+.++|++.|+++++++|+++.++..++
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~  216 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence            888888877665  457999999999999999999999999998876543222677888999999999998888888888


Q ss_pred             HHHHHhh----hhhhhhhhhHHHHH--HHhHHHHHHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642        147 LSCHQVL----TSAKCSAAKKKEIS--KQMMWVSKHLARQYEEQQGNTETLTELMSALQ  199 (201)
Q Consensus       147 ~~~~~~~----~~~~a~~~~~~~~~--~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~  199 (201)
                      .++...+    +..+|....++...  .....+...+...|......+.++..+.+++.
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  275 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE  275 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            7776654    33444433332221  11223344556666666666665555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.77  E-value=1.1e-17  Score=109.18  Aligned_cols=103  Identities=12%  Similarity=0.071  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      ..++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|++++.++|+++.++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642        115 QGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      .|   ++++|+..|+++++.+|++..
T Consensus        98 ~g---~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EH---NANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HH---HHHHHHHHHHHHHC-------
T ss_pred             cC---CHHHHHHHHHHHHHhCcCCCC
Confidence            99   999999999999999998653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.77  E-value=5.5e-17  Score=106.17  Aligned_cols=126  Identities=20%  Similarity=0.239  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      .++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|.++..+..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642        115 QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      .|   ++++|+..+++++...|+++.++..++.++...|+.++|.....
T Consensus        82 ~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  127 (136)
T 2fo7_A           82 QG---DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ  127 (136)
T ss_dssp             TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence            99   99999999999999999999999999999999999998855433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.77  E-value=2.4e-18  Score=119.32  Aligned_cols=164  Identities=10%  Similarity=0.062  Sum_probs=135.9

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642         31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD  110 (201)
Q Consensus        31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  110 (201)
                      |.....+..+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+| ++......+.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            444456778999999999999999999999999999999999999999999999999999999999999 8877766665


Q ss_pred             HHH-HcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh----HHHHHHHHHHHHhhh
Q psy12642        111 ILY-TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQM----MWVSKHLARQYEEQQ  185 (201)
Q Consensus       111 ~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~l~~~y~~~~  185 (201)
                      +.. ..+   ...+|+..++++++.+|+++.+++.++.++...|++++|.....+......    ..+...+...|....
T Consensus        82 ~~~~~~~---~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g  158 (176)
T 2r5s_A           82 LELHQQA---AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG  158 (176)
T ss_dssp             HHHHHHH---TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHhhc---ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence            533 222   334589999999999999999999999999999999999877665553321    336667888899888


Q ss_pred             cchHHHHHHHhhc
Q psy12642        186 GNTETLTELMSAL  198 (201)
Q Consensus       186 ~~~~~~~~~~~~~  198 (201)
                      ..++++..+.++|
T Consensus       159 ~~~~A~~~y~~al  171 (176)
T 2r5s_A          159 QGNAIASKYRRQL  171 (176)
T ss_dssp             SSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            8888777776655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.77  E-value=2.2e-17  Score=127.50  Aligned_cols=192  Identities=10%  Similarity=0.037  Sum_probs=152.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT----AARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQE   73 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~   73 (201)
                      +..+..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+..+++++..      .|....++..
T Consensus        13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   92 (406)
T 3sf4_A           13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   92 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            4456778899999999999999999999884    67889999999999999999999999876      3344678899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCccc--------------------HHHHHHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLEN--------------------IELAISH  127 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~--------------------~~~A~~~  127 (201)
                      +|.++...|++++|+.++++++...|..      ..++..+|.++...|   +                    +++|+.+
T Consensus        93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG---KSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH---HTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC---CcccccccchhhhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999876643      448899999999999   9                    9999999


Q ss_pred             HHHHHcC------CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--------HhHHHHHHHHHHHHhhhcchHHHHH
Q psy12642        128 YLMAINL------NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISK--------QMMWVSKHLARQYEEQQGNTETLTE  193 (201)
Q Consensus       128 ~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~l~~~y~~~~~~~~~~~~  193 (201)
                      +++++.+      .|....++..++.++...|++++|.....+....        ....+...+...|......+.++..
T Consensus       170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  249 (406)
T 3sf4_A          170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  249 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            9999886      4455678999999999999999997755444321        1122444566666666666555555


Q ss_pred             HHhhc
Q psy12642        194 LMSAL  198 (201)
Q Consensus       194 ~~~~~  198 (201)
                      +.+++
T Consensus       250 ~~~al  254 (406)
T 3sf4_A          250 YKKTL  254 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.77  E-value=3.9e-17  Score=122.52  Aligned_cols=191  Identities=9%  Similarity=0.027  Sum_probs=149.8

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT----AARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQE   73 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~   73 (201)
                      +..+..++..|++++|+..|+++++.+|.++    .++..+|.++...|++++|+..+++++..      .|....++..
T Consensus         9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A            9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            4456778899999999999999999999884    67889999999999999999999999876      3444678899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCccc--------------------HHHHHHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLEN--------------------IELAISH  127 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~--------------------~~~A~~~  127 (201)
                      +|.++...|++++|+..+++++...|..      ..++..+|.++...|   +                    +++|+.+
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG---KSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC---cccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999875533      348889999999999   9                    9999999


Q ss_pred             HHHHHcC------CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--------HhHHHHHHHHHHHHhhhcchHHHHH
Q psy12642        128 YLMAINL------NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISK--------QMMWVSKHLARQYEEQQGNTETLTE  193 (201)
Q Consensus       128 ~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~l~~~y~~~~~~~~~~~~  193 (201)
                      +++++..      .|....++..++.++...|++++|.....+....        ....+...+...|......+.++..
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999876      3445678999999999999999997755443321        1112334455556555555554444


Q ss_pred             HHhh
Q psy12642        194 LMSA  197 (201)
Q Consensus       194 ~~~~  197 (201)
                      +.++
T Consensus       246 ~~~a  249 (338)
T 3ro2_A          246 YKKT  249 (338)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.76  E-value=2.5e-17  Score=125.56  Aligned_cols=127  Identities=13%  Similarity=0.029  Sum_probs=118.9

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETN---------------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE   69 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~   69 (201)
                      ..+..++..|++++|+..|++++..+|.+               ..++..+|.++...|++++|+..+++++..+|+++.
T Consensus       152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~  231 (336)
T 1p5q_A          152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK  231 (336)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            35677899999999999999999999998               699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH-HHHHHHHHcC
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA-ISHYLMAINL  134 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A-~~~~~~al~~  134 (201)
                      +++.+|.+|..+|++++|+.+|++++.++|++..++..++.++...+   ++++| ...|.+.+..
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~---~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR---RQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999   99988 5577776643

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.76  E-value=1.6e-16  Score=118.62  Aligned_cols=156  Identities=17%  Similarity=0.136  Sum_probs=132.0

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNT------AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQE   73 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~   73 (201)
                      .+..++..|++++|++.+.++++..|...      ..+..+|.++...|++++|+..+++++...+..      ..++..
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            34567889999999999999999876544      445678888999999999999999999865543      568899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHh---hcCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------cHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELF---LHHPHNH----LLHQRYADILYTQGGLENIELAISHYLMAINLNEK------NIR  140 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~  140 (201)
                      +|.+|..+|++++|+.+|++++   ...|++.    .++.++|.++...|   ++++|+.++++++++.++      ...
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~---~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS---RYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh---hHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            9999999999999999999999   5566643    58899999999999   999999999999988654      277


Q ss_pred             HHHHHHHHHHHhhhhhhh-hhhhHH
Q psy12642        141 ALYGLALSCHQVLTSAKC-SAAKKK  164 (201)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a-~~~~~~  164 (201)
                      +++++|.+|..+|++++| ....++
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            899999999999999999 443433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=1.6e-16  Score=125.53  Aligned_cols=143  Identities=12%  Similarity=-0.038  Sum_probs=126.6

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCC
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKA---KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGD   83 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~   83 (201)
                      +..++|++|+.+|+++++.+|+++.++..++.++..   .++.++|+..++++++++|+++.++..+|..+..    .|+
T Consensus       149 ~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~  228 (472)
T 4g1t_A          149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE  228 (472)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred             HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence            345689999999999999999999999999888554   5778899999999999999999999988876654    467


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA  156 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  156 (201)
                      +++|..++++++..+|.++.++..+|.++...|   ++++|+..|+++++.+|+++.++..+|.+|...+...
T Consensus       229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~  298 (472)
T 4g1t_A          229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD---EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV  298 (472)
T ss_dssp             -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC---chHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence            889999999999999999999999999999999   9999999999999999999999999999998765543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.76  E-value=3e-17  Score=122.69  Aligned_cols=152  Identities=14%  Similarity=0.021  Sum_probs=122.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCC------HHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETN------TAARKRKICILKAK-NKIPEAIKELTEYLKKFMTD------QETWQ   72 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~   72 (201)
                      .+..+...|++++|+.+|+++++..|..      ..++..+|.++... |++++|+..|++++.+.|.+      ..++.
T Consensus        83 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~  162 (292)
T 1qqe_A           83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI  162 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            4566788999999999999999987653      46888999999996 99999999999999998764      46788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH-------HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH----
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHL-------LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA----  141 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~----  141 (201)
                      .+|.++..+|++++|+.+|++++...|++..       ++..+|.++...|   ++++|+.+|+++++++|+....    
T Consensus       163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~~  239 (292)
T 1qqe_A          163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT---DAVAAARTLQEGQSEDPNFADSRESN  239 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT---CHHHHHHHHHGGGCC---------HH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            9999999999999999999999999987653       6789999999999   9999999999999999986553    


Q ss_pred             -HHHHHHHHH--Hhhhhhhhhh
Q psy12642        142 -LYGLALSCH--QVLTSAKCSA  160 (201)
Q Consensus       142 -~~~l~~~~~--~~~~~~~a~~  160 (201)
                       +..++.++.  ..+++.+|..
T Consensus       240 ~l~~l~~~~~~~~~~~~~~A~~  261 (292)
T 1qqe_A          240 FLKSLIDAVNEGDSEQLSEHCK  261 (292)
T ss_dssp             HHHHHHHHHHTTCTTTHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH
Confidence             344555554  3344555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.76  E-value=1.4e-16  Score=114.64  Aligned_cols=159  Identities=10%  Similarity=0.008  Sum_probs=134.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH---HHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL---LHQ  106 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~  106 (201)
                      .+..++.+|..+...|++++|+..|++++...|++   ..+++.+|.+|+..|++++|+..|++++..+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            46778899999999999999999999999999987   478999999999999999999999999999998864   788


Q ss_pred             HHHHHHHH------------------cCCcccHHHHHHHHHHHHcCCcccHHHH-----------------HHHHHHHHH
Q psy12642        107 RYADILYT------------------QGGLENIELAISHYLMAINLNEKNIRAL-----------------YGLALSCHQ  151 (201)
Q Consensus       107 ~la~~~~~------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~  151 (201)
                      .+|.++..                  .|   ++++|+..|+++++.+|+++.++                 ..++.+|..
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~  159 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQ---QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE  159 (225)
T ss_dssp             HHHHHHHHHHC--------------CCH---HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcH---HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998876                  46   89999999999999999987554                 578889999


Q ss_pred             hhhhhhhhhhhHHHHHHH-----hHHHHHHHHHHHHhhhcchHHHHHH
Q psy12642        152 VLTSAKCSAAKKKEISKQ-----MMWVSKHLARQYEEQQGNTETLTEL  194 (201)
Q Consensus       152 ~~~~~~a~~~~~~~~~~~-----~~~~~~~l~~~y~~~~~~~~~~~~~  194 (201)
                      .|++.+|.....+.....     ...+...+...|..+...+.+++.+
T Consensus       160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            999999987766555432     3355667788888888777755444

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.76  E-value=1.2e-17  Score=129.62  Aligned_cols=190  Identities=13%  Similarity=0.069  Sum_probs=137.5

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKI------DETNTAARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQ   72 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~   72 (201)
                      ..+..+...|++++|+..++++++.      .|....++..+|.++...|++++|+..+++++..      .|....++.
T Consensus        91 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  170 (411)
T 4a1s_A           91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALY  170 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            3556677788888888888888877      5677788888888888888888888888888876      444566788


Q ss_pred             HHHHHHHhcCC-----------------HHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642         73 ELCDLYLSEGD-----------------YAKAVFCMEELFLHH------PHNHLLHQRYADILYTQGGLENIELAISHYL  129 (201)
Q Consensus        73 ~l~~~~~~~~~-----------------~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~  129 (201)
                      .+|.+|...|+                 +++|+.++++++.+.      +....++..+|.++...|   ++++|+.+|+
T Consensus       171 ~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~  247 (411)
T 4a1s_A          171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG---DFQAAIEHHQ  247 (411)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---ChHHHHHHHH
Confidence            88888888888                 888888888887653      223457788888888888   8888888888


Q ss_pred             HHHcCCcccHH------HHHHHHHHHHHhhhhhhhhhhhHHHHHHHh--------HHHHHHHHHHHHhhhcchHHHHHHH
Q psy12642        130 MAINLNEKNIR------ALYGLALSCHQVLTSAKCSAAKKKEISKQM--------MWVSKHLARQYEEQQGNTETLTELM  195 (201)
Q Consensus       130 ~al~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~l~~~y~~~~~~~~~~~~~~  195 (201)
                      +++++.|....      ++..++.++...|++++|.....+......        ..+...+...|......+.++..+.
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (411)
T 4a1s_A          248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN  327 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88887765333      778888888888888888665544432211        2344455556666555555544444


Q ss_pred             hh
Q psy12642        196 SA  197 (201)
Q Consensus       196 ~~  197 (201)
                      ++
T Consensus       328 ~a  329 (411)
T 4a1s_A          328 RH  329 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.76  E-value=1.9e-17  Score=110.84  Aligned_cols=111  Identities=7%  Similarity=-0.088  Sum_probs=101.3

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|+
T Consensus        22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  101 (142)
T 2xcb_A           22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD  101 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      +++|+.+|++++..+|+++........+...
T Consensus       102 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A          102 LDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            9999999999999999887765555544433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.75  E-value=7.4e-17  Score=105.19  Aligned_cols=113  Identities=9%  Similarity=-0.003  Sum_probs=108.2

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+
T Consensus        16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (131)
T 2vyi_A           16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK   95 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      +++|+.++++++..+|+++.++..+|.++...|
T Consensus        96 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           96 HVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998887

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=4e-17  Score=110.17  Aligned_cols=103  Identities=11%  Similarity=-0.036  Sum_probs=96.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|+
T Consensus        25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~  104 (148)
T 2vgx_A           25 YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE  104 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQ  106 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~  106 (201)
                      +++|+.+|++++.++|+++....
T Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A          105 LAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHHHCcCCCcchH
Confidence            99999999999999998776543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.75  E-value=3e-16  Score=121.08  Aligned_cols=156  Identities=13%  Similarity=0.068  Sum_probs=134.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQ   72 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~   72 (201)
                      .+..++..|++++|+..|++++...      |....++..+|.++...|+++.|+..+++++...+..       ..++.
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            4566788999999999999999863      3456889999999999999999999999999875532       45788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCC--C----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc-----CCcccHHH
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHP--H----NHLLHQRYADILYTQGGLENIELAISHYLMAIN-----LNEKNIRA  141 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~--~----~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~  141 (201)
                      .+|.+|...|++++|+.+|++++...+  +    ...++..+|.++...|   ++++|+.+|++++.     .+|..+.+
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG---DDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            899999999999999999999998643  1    2357889999999999   99999999999999     88888999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHH
Q psy12642        142 LYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus       142 ~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      +..+|.++...|++++|....++
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~  286 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEE  286 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999999664443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.75  E-value=6.8e-16  Score=115.74  Aligned_cols=185  Identities=13%  Similarity=0.006  Sum_probs=131.6

Q ss_pred             hhhhcc--CHHHHHHHHHHHHhcCcccHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642          9 GCFHFF--RYEEALEHLETIIKIDETNTAARKRKICIL----KAK---NKIPEAIKELTEYLKKFMTDQETWQELCDLYL   79 (201)
Q Consensus         9 ~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~   79 (201)
                      .+...+  ++++++.+++.++..+|.+..+|..++.++    ...   +++++++..+.+++..+|.+..+|...+.+..
T Consensus        76 ~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~  155 (306)
T 3dra_A           76 ILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVD  155 (306)
T ss_dssp             HHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344455  788888888888888888888888877777    555   67778888888888888888888888887777


Q ss_pred             hcCCHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCccc------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         80 SEGDYA--KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLEN------IELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        80 ~~~~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      ..|.++  +++.++.+++..+|.|..+|...+.++...+   .      ++++++++.+++..+|++..+|.+++.++..
T Consensus       156 ~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~---~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~  232 (306)
T 3dra_A          156 TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK---HLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER  232 (306)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG---GGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc---ccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            778777  8888888888888888888888888877776   5      8888888888888888888888888888888


Q ss_pred             hhhhhhhhhhhHHHHHHH------hHHHHHHHHHHHHhhhcchHHHHHHHh
Q psy12642        152 VLTSAKCSAAKKKEISKQ------MMWVSKHLARQYEEQQGNTETLTELMS  196 (201)
Q Consensus       152 ~~~~~~a~~~~~~~~~~~------~~~~~~~l~~~y~~~~~~~~~~~~~~~  196 (201)
                      .|....+..+......++      ...+..-+..+|.+....+++++.+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~  283 (306)
T 3dra_A          233 FDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL  283 (306)
T ss_dssp             TTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            876544433221111111      224455566666655444445544433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=5.4e-17  Score=108.44  Aligned_cols=120  Identities=15%  Similarity=0.017  Sum_probs=112.3

Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642         29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH  105 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  105 (201)
                      .+|.+...+..+|..+...|++++|+..++++++..|++   ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457788999999999999999999999999999999987   88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642        106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus       106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      +.+|.++...+   ++++|+.+|+++++++|++..++..++.+...
T Consensus       103 ~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          103 YRRSQALEKLG---RLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99999999999   99999999999999999999988888776543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.75  E-value=2.3e-17  Score=127.35  Aligned_cols=189  Identities=14%  Similarity=0.081  Sum_probs=111.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETN------TAARKRKICILKAKNK--------------------IPEAIKELTE   59 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~   59 (201)
                      .+..+...|++++|+..+++++...|..      ..++..+|.++...|+                    +++|+..+.+
T Consensus        93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  172 (406)
T 3sf4_A           93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE  172 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            3444556667777777766666655432      3466666666666666                    6666666666


Q ss_pred             HHHh------cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642         60 YLKK------FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH------LLHQRYADILYTQGGLENIELAISH  127 (201)
Q Consensus        60 ~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~~~~A~~~  127 (201)
                      ++..      .|....++..+|.++...|++++|+.++++++...|...      .++..+|.++...|   ++++|+.+
T Consensus       173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~  249 (406)
T 3sf4_A          173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG---EFETASEY  249 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC---ChHHHHHH
Confidence            6654      222244566667777777777777777777766544322      25666777777777   77777777


Q ss_pred             HHHHHcCCccc------HHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--------HhHHHHHHHHHHHHhhhcchHHHHH
Q psy12642        128 YLMAINLNEKN------IRALYGLALSCHQVLTSAKCSAAKKKEISK--------QMMWVSKHLARQYEEQQGNTETLTE  193 (201)
Q Consensus       128 ~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~l~~~y~~~~~~~~~~~~  193 (201)
                      +++++.+.|..      ..++..++.++...|++++|.....+...-        ....+...+...|......+.++..
T Consensus       250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  329 (406)
T 3sf4_A          250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF  329 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777665543      556667777777777777775544333211        1122333455555555555554444


Q ss_pred             HHhh
Q psy12642        194 LMSA  197 (201)
Q Consensus       194 ~~~~  197 (201)
                      +.++
T Consensus       330 ~~~a  333 (406)
T 3sf4_A          330 AEKH  333 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.75  E-value=4.2e-17  Score=111.60  Aligned_cols=110  Identities=11%  Similarity=-0.017  Sum_probs=102.3

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.+|+.+|.++..+|+
T Consensus        15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   94 (164)
T 3sz7_A           15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD   94 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence            44667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILY  113 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~  113 (201)
                      +++|+.+|++++.++|++...+...+....
T Consensus        95 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           95 YKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            999999999999999999887666665433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.75  E-value=7.2e-17  Score=105.35  Aligned_cols=120  Identities=14%  Similarity=0.070  Sum_probs=110.3

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------HHH
Q psy12642         32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN-------HLL  104 (201)
Q Consensus        32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~  104 (201)
                      ..+..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4567888999999999999999999999999999999999999999999999999999999999998877       889


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh
Q psy12642        105 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS  155 (201)
Q Consensus       105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  155 (201)
                      +..+|.++...|   ++++|+.+|+++++..| ++..+..++.+...+++.
T Consensus        82 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           82 YARIGNSYFKEE---KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc---cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            999999999999   99999999999999998 588888898888877654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=5.8e-17  Score=106.27  Aligned_cols=113  Identities=15%  Similarity=0.107  Sum_probs=107.8

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus        20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~   99 (133)
T 2lni_A           20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD   99 (133)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhh
Confidence            44667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      +++|+.+|++++..+|.+..++..++.++...+
T Consensus       100 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A          100 YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988766

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.74  E-value=1.5e-17  Score=112.18  Aligned_cols=114  Identities=11%  Similarity=0.023  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhc----
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMT-------DQE-----TWQELCDLYLSEGDYAKAVFCMEELFLH----   97 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~----   97 (201)
                      ...+...|..++..|++++|+..|+++++.+|+       +..     +|..+|.++..+|+|++|+.+++++|.+    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456778899999999999999999999999998       544     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         98 ---HPHNHLLH----QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus        98 ---~~~~~~~~----~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                         +|++..+|    +++|.++..+|   ++++|+..|+++++++|++......+..+-.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lg---r~eEAl~~y~kAlel~p~d~~~~~~~~~~~~  147 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLG---RGAEAMPEFKKVVEMIEERKGETPGKERMME  147 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence               99999999    99999999999   9999999999999999987665555544433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.74  E-value=3.2e-17  Score=121.94  Aligned_cols=98  Identities=11%  Similarity=-0.015  Sum_probs=91.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++..+|+
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   87 (281)
T 2c2l_A            8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   87 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCC
Q psy12642         84 YAKAVFCMEELFLHHPHN  101 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~  101 (201)
                      +++|+..|++++.++|++
T Consensus        88 ~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           88 YDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCccc
Confidence            999999999999988865

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.74  E-value=4.4e-17  Score=106.21  Aligned_cols=100  Identities=14%  Similarity=0.039  Sum_probs=89.9

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            44667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHL  103 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~  103 (201)
                      +++|+..+++++..+|++..
T Consensus       101 ~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999998653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.74  E-value=4.3e-16  Score=111.18  Aligned_cols=153  Identities=11%  Similarity=-0.050  Sum_probs=127.0

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN----KIPEAIKELTEYLKKFMTDQETWQELCDLYLS   80 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~   80 (201)
                      .++..+...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+++.+  +.++.+++.+|.+|..
T Consensus        23 ~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           23 YLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHc
Confidence            3556677789999999999999865  578889999999888 6    89999999999865  6789999999999987


Q ss_pred             ----cCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         81 ----EGDYAKAVFCMEELFLHHP--HNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus        81 ----~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                          .+++++|+.+|++++...|  .++.+++.+|.++..    .+   ++++|+.+|+++++. |+++.++++|+.+|.
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~---d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE---DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC---CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence                8899999999999998887  358899999999988    66   899999999999988 666778999999997


Q ss_pred             Hh-h-----hhhhhhhhhHHHH
Q psy12642        151 QV-L-----TSAKCSAAKKKEI  166 (201)
Q Consensus       151 ~~-~-----~~~~a~~~~~~~~  166 (201)
                      .- |     +.++|..-.++..
T Consensus       174 ~g~gg~~~~d~~~A~~~~~~A~  195 (212)
T 3rjv_A          174 QGEKGFIEPNKQKALHWLNVSC  195 (212)
T ss_dssp             HCBTTTBCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHH
Confidence            64 2     5667755444444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.73  E-value=4.1e-17  Score=122.39  Aligned_cols=190  Identities=15%  Similarity=0.103  Sum_probs=101.5

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETN------TAARKRKICILKAKNK--------------------IPEAIKELTEY   60 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~   60 (201)
                      +..+...|++++|+..++++++..|..      ..++..+|.++...|+                    +++|+..++++
T Consensus        90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  169 (338)
T 3ro2_A           90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN  169 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            334455566666666666655543322      2355555666666666                    56666665555


Q ss_pred             HHhc------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642         61 LKKF------MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHY  128 (201)
Q Consensus        61 ~~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~  128 (201)
                      +...      |....++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|   ++++|+.++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~  246 (338)
T 3ro2_A          170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG---EFETASEYY  246 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence            5431      1223355556666666666666666666666543321      125566666666666   666666666


Q ss_pred             HHHHcCCccc------HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--------hHHHHHHHHHHHHhhhcchHHHHHH
Q psy12642        129 LMAINLNEKN------IRALYGLALSCHQVLTSAKCSAAKKKEISKQ--------MMWVSKHLARQYEEQQGNTETLTEL  194 (201)
Q Consensus       129 ~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~l~~~y~~~~~~~~~~~~~  194 (201)
                      ++++...|..      ..++..++.++...|++++|.....+.....        ...+...+...|......++++..+
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (338)
T 3ro2_A          247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA  326 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            6666555443      4556666666666666666655433332111        1123334555555555555555555


Q ss_pred             Hhhcc
Q psy12642        195 MSALQ  199 (201)
Q Consensus       195 ~~~~~  199 (201)
                      .+++.
T Consensus       327 ~~a~~  331 (338)
T 3ro2_A          327 EKHLE  331 (338)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.73  E-value=1.7e-16  Score=103.87  Aligned_cols=112  Identities=11%  Similarity=-0.008  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHHH
Q psy12642         36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRYA  109 (201)
Q Consensus        36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la  109 (201)
                      +++.+|.++...|++++|+..++++++.+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            356677788888888888888888888888776   678888888888888888888888888888887   77788888


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642        110 DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus       110 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                      .++...|   ++++|+..|+++++..|+++.+......+..
T Consensus        84 ~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           84 LSQYGEG---KNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHcC---CHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            8888888   8888888888888888877766555544433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.73  E-value=4.7e-16  Score=99.57  Aligned_cols=109  Identities=13%  Similarity=0.053  Sum_probs=103.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +..+..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   87 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   87 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADIL  112 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~  112 (201)
                      +++|+..+++++..+|+++.++..++.+.
T Consensus        88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           88 FEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999999999988764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.72  E-value=1.6e-16  Score=118.60  Aligned_cols=156  Identities=17%  Similarity=0.155  Sum_probs=129.1

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTA------ARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQEL   74 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l   74 (201)
                      +..++..|++++|+..+++++...+..+.      .+..+|.++...+++++|+..+++++...+..      ..++..+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            45678899999999999999997766554      33457888888899999999999999965443      3478999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc------HHH
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLH-------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRA  141 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~  141 (201)
                      |.+|..+|++++|+.+|++++..       .+....++.++|.++...|   ++++|+.++++++++.+..      ..+
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~---~y~~A~~~~~~al~~~~~~~~~~~~~~~  238 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS---RYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            99999999999999999999952       1223457899999999999   9999999999999887654      789


Q ss_pred             HHHHHHHHHHhhh-hhhhhhhhHHH
Q psy12642        142 LYGLALSCHQVLT-SAKCSAAKKKE  165 (201)
Q Consensus       142 ~~~l~~~~~~~~~-~~~a~~~~~~~  165 (201)
                      ++++|.+|..+|+ +++|....++.
T Consensus       239 ~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          239 YYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            9999999999995 48886544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.72  E-value=5.5e-17  Score=103.12  Aligned_cols=106  Identities=14%  Similarity=0.030  Sum_probs=99.6

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHHH
Q psy12642         30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQR  107 (201)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~  107 (201)
                      +|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++..+|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            57788888999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-CCcccHHHHHHHHHHHHcCCccc
Q psy12642        108 YADILYTQ-GGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus       108 la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      +|.++... |   ++++|++++++++...|.+
T Consensus        82 l~~~~~~~~~---~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEG---KEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSS---CSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhC---CHHHHHHHHHHHhhcccCC
Confidence            99999999 9   9999999999999998875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.72  E-value=1.9e-16  Score=111.57  Aligned_cols=124  Identities=11%  Similarity=-0.012  Sum_probs=109.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNT----------------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ   68 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~   68 (201)
                      ..+..++..|++++|+..|++++...|.++                .++..+|.++...|++++|+..+++++..+|+++
T Consensus        43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  122 (198)
T 2fbn_A           43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV  122 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH
Confidence            356678899999999999999999998887                8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHH-HHHHHH
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI-SHYLMA  131 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~-~~~~~a  131 (201)
                      .+++.+|.++...|++++|+.+|++++.++|+++.++..++.++...+   +..++. ..|.+.
T Consensus       123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~  183 (198)
T 2fbn_A          123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK---EARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---HHHC---------
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888   776665 333333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.72  E-value=7.4e-16  Score=99.53  Aligned_cols=112  Identities=21%  Similarity=0.268  Sum_probs=105.9

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      ..+..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus        14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   93 (125)
T 1na0_A           14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY   93 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      ++|+..+++++..+|+++.++..++.++...|
T Consensus        94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999877654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.72  E-value=3.1e-16  Score=111.27  Aligned_cols=127  Identities=12%  Similarity=0.052  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY  113 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  113 (201)
                      ...++.+|.++...|++++|+..+++++   +.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            3456788999999999999999999985   3378999999999999999999999999999999999999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHcCCcccH----------------HHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        114 TQGGLENIELAISHYLMAINLNEKNI----------------RALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       114 ~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      ..|   ++++|+..|+++++..|++.                .++++++.++...|++++|.....+..
T Consensus        83 ~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           83 QTE---KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             HTT---CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             Hcc---cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999   99999999999999777655                999999999999999999977555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.72  E-value=1.3e-16  Score=108.85  Aligned_cols=112  Identities=14%  Similarity=0.084  Sum_probs=102.8

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhc------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKI------------------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT   66 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~   66 (201)
                      -.+..++..|+|++|+..|.+++..                  +|.+..++..+|.++..+|++++|+..+.+++..+|+
T Consensus        16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~   95 (162)
T 3rkv_A           16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET   95 (162)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence            3567789999999999999999998                  7788899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHcC
Q psy12642         67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH-LLHQRYADILYTQG  116 (201)
Q Consensus        67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~  116 (201)
                      ++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+.....
T Consensus        96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 66777777665544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.71  E-value=3.1e-16  Score=103.02  Aligned_cols=103  Identities=13%  Similarity=0.141  Sum_probs=92.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-------ETWQELCDLY   78 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~   78 (201)
                      .+..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|++.       .++..+|.++
T Consensus        14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~   93 (127)
T 4gcn_A           14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF   93 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999988663       5788899999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         79 LSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        79 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      ..+|++++|+.+|++++...|+ +.....+.
T Consensus        94 ~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           94 QKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            9999999999999999998885 55544443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.71  E-value=2.8e-17  Score=130.83  Aligned_cols=129  Identities=14%  Similarity=0.154  Sum_probs=116.6

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..++..|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|+++.++..+|.+|..+|++++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHH--HHHcCCcccHHHHHHHHH-----------HHHcCCccc
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADI--LYTQGGLENIELAISHYL-----------MAINLNEKN  138 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~--~~~~~~~~~~~~A~~~~~-----------~al~~~p~~  138 (201)
                      |+..|+++++.+|++..++..++.+  +...+   ++++|++.++           +++.++|+.
T Consensus        93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQK---AFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHH---HHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999999999999988  88889   9999999999           888887754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.71  E-value=1.2e-15  Score=99.73  Aligned_cols=114  Identities=10%  Similarity=0.045  Sum_probs=103.2

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHH
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCD   76 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~   76 (201)
                      .+..+..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..+++++..+|++   +.+++.+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            34567788999999999999999999999988   799999999999999999999999999999999   899999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      ++..+|++++|+..|++++...|+++.+......+....+
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988777666554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.70  E-value=7.6e-17  Score=122.99  Aligned_cols=131  Identities=11%  Similarity=0.004  Sum_probs=68.9

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNT-----------------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ   68 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~   68 (201)
                      .+..++..|+|++|+..|++++...|.+.                 .++..+|.++..+|++++|+..+++++..+|++.
T Consensus       185 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  264 (338)
T 2if4_A          185 DGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP  264 (338)
T ss_dssp             HHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            45567778888888888888888887766                 3677777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY-TQGGLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                      .+++.+|.+|..+|++++|+.+|++++.++|++..++..++.+.. ..+   ..+.+...|.+++...|+++
T Consensus       265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~---~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA---LYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhCCCCCCC
Confidence            777777777777777777777777777777777777777776633 334   56667777777777777654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.70  E-value=1.5e-16  Score=109.99  Aligned_cols=119  Identities=18%  Similarity=0.239  Sum_probs=107.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHcCCcccH-
Q psy12642         44 LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI-LYTQGGLENI-  121 (201)
Q Consensus        44 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~~-  121 (201)
                      +...|++++|+..+++++..+|+++.+|..+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|   ++ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~---~~~   96 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS---QHM   96 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT---TCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC---Ccc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999 77889   88 


Q ss_pred             -HHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        122 -ELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       122 -~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                       ++|+..|+++++.+|+++.+++.++.++...|++++|.....+.
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence             99999999999999999999999999999999999997655443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.70  E-value=4.9e-16  Score=119.90  Aligned_cols=124  Identities=15%  Similarity=0.008  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLK----------------KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      ...+..+|..+...|++++|+..|+++++                ..|.+..++..+|.+|..+|++++|+.++++++..
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            46688899999999999999999999998                77788899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642         98 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        98 ~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      +|+++.+++.+|.++...+   ++++|+..|+++++++|++..++..++.++...++..++..
T Consensus       303 ~p~~~~a~~~lg~~~~~~g---~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLK---EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999   99999999999999999999999999999999998877743

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.70  E-value=5.3e-16  Score=102.52  Aligned_cols=112  Identities=10%  Similarity=-0.044  Sum_probs=102.1

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ...+..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|+
T Consensus        13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   92 (137)
T 3q49_B           13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   92 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh
Confidence            44667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHc
Q psy12642         84 YAKAVFCMEELFLHHPH-----NHLLHQRYADILYTQ  115 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~  115 (201)
                      +++|+.+|++++..+|+     +..+...+..+....
T Consensus        93 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           93 YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887     666666666654443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.70  E-value=2.7e-15  Score=112.52  Aligned_cols=146  Identities=15%  Similarity=0.037  Sum_probs=135.5

Q ss_pred             HHHhhhhccCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----
Q psy12642          6 YIIGCFHFFRY-EEALEHLETIIKIDETNTAARKRKICILKAKN--KIPEAIKELTEYLKKFMTDQETWQELCDLY----   78 (201)
Q Consensus         6 ~~~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~----   78 (201)
                      ++....+.|.+ ++|+..+++++..+|++..+|..++.++...+  ++++++..+..++..+|++..+|...+.+.    
T Consensus        38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~  117 (306)
T 3dra_A           38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM  117 (306)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence            33444555665 68999999999999999999999999999999  999999999999999999999999999988    


Q ss_pred             Hhc---CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH--HHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         79 LSE---GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE--LAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        79 ~~~---~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      ...   +++++++.++++++..+|.|..+|...+.++...+   .++  ++++++.++++.+|.|..+|.+.+.+....+
T Consensus       118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~---~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~  194 (306)
T 3dra_A          118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFD---LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK  194 (306)
T ss_dssp             HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred             HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            666   78999999999999999999999999999999999   888  9999999999999999999999999999887


Q ss_pred             h
Q psy12642        154 T  154 (201)
Q Consensus       154 ~  154 (201)
                      .
T Consensus       195 ~  195 (306)
T 3dra_A          195 H  195 (306)
T ss_dssp             G
T ss_pred             c
Confidence            6

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=1.1e-15  Score=122.89  Aligned_cols=151  Identities=8%  Similarity=-0.042  Sum_probs=136.4

Q ss_pred             ccCHH-------HHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCC
Q psy12642         13 FFRYE-------EALEHLETIIK-IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-ETWQELCDLYLSEGD   83 (201)
Q Consensus        13 ~~~~~-------~A~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~   83 (201)
                      .|+++       +|+..|+++++ ..|++..+|..++.++...|++++|...|++++...|.++ .+|..+|.++.+.|+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  371 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG  371 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence            68887       99999999997 7999999999999999999999999999999999999986 699999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADIL-YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      +++|...|++++...|.+...+...+.+. ...|   ++++|+..|+++++..|+++..|..++.++...|+.++|+...
T Consensus       372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~---~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~  448 (530)
T 2ooe_A          372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK---DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF  448 (530)
T ss_dssp             HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence            99999999999999988877777666553 3578   9999999999999999999999999999999999999997765


Q ss_pred             HHHH
Q psy12642        163 KKEI  166 (201)
Q Consensus       163 ~~~~  166 (201)
                      .+..
T Consensus       449 ~~al  452 (530)
T 2ooe_A          449 ERVL  452 (530)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.69  E-value=1.8e-16  Score=106.88  Aligned_cols=102  Identities=14%  Similarity=0.039  Sum_probs=93.7

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcc-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------cC
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDET-------NTA-----ARKRKICILKAKNKIPEAIKELTEYLKK-------FM   65 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p   65 (201)
                      -.+..++..|+|++|+..|+++++.+|+       +..     +|..+|.++..+|++++|+..+++++.+       +|
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p   95 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   95 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence            3556789999999999999999999999       444     9999999999999999999999999999       99


Q ss_pred             CCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642         66 TDQETW----QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ  106 (201)
Q Consensus        66 ~~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  106 (201)
                      ++..+|    +.+|.++..+|++++|+.+|++++.++|++....-
T Consensus        96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A           96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            999999    99999999999999999999999999998765433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.69  E-value=1.1e-16  Score=103.44  Aligned_cols=100  Identities=13%  Similarity=0.076  Sum_probs=78.3

Q ss_pred             ccCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKI---DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      .|++++|+..|+++++.   +|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            57888888888888888   588888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHH
Q psy12642         90 CMEELFLHHPHNHLLHQRYADIL  112 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~  112 (201)
                      .+++++...|+++........+.
T Consensus        83 ~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHH
Confidence            88888888888876654444333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.69  E-value=6e-16  Score=119.47  Aligned_cols=193  Identities=10%  Similarity=-0.008  Sum_probs=154.5

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKID-------ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETW   71 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~   71 (201)
                      ..+..+...|++++|+.+++++++..       +....++..+|.++...|++++|+..+++++...|..      ..++
T Consensus       148 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  227 (383)
T 3ulq_A          148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTL  227 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            35566888999999999999999974       3345789999999999999999999999999876543      2588


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhh-----cC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC-----cccHH
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELFL-----HH-PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN-----EKNIR  140 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al~-----~~-~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~  140 (201)
                      ..+|.+|..+|++++|+.++++++.     .+ |..+.++..+|.++...|   ++++|+.++++++++.     |....
T Consensus       228 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~  304 (383)
T 3ulq_A          228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG---KIDKAHEYHSKGMAYSQKAGDVIYLS  304 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            8999999999999999999999998     46 777889999999999999   9999999999999884     44445


Q ss_pred             HHHHHHHHHHHhhh---hhhhhhhhHHHH-HHHhHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        141 ALYGLALSCHQVLT---SAKCSAAKKKEI-SKQMMWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       141 ~~~~l~~~~~~~~~---~~~a~~~~~~~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      .+..++.++...|+   ..+|....++.. ......+...+...|..+...++++..+.+++.+
T Consensus       305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            56789999999888   555544332221 1223334556888888888888877777666543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.69  E-value=5.6e-16  Score=116.57  Aligned_cols=154  Identities=12%  Similarity=0.086  Sum_probs=131.2

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--C----HHHHHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETN------TAARKRKICILKAKNKIPEAIKELTEYLKKFMT--D----QETWQELC   75 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~   75 (201)
                      ..+...|++++|+..|.++++..+..      ..++..+|.+|..+|++++|+..+++++.+.+.  +    ..++..+|
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44677899999999999999876532      568889999999999999999999999987543  2    45788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc------HHHHH
Q psy12642         76 DLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRALY  143 (201)
Q Consensus        76 ~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  143 (201)
                      .+|.. |++++|+.+|++++.+.|..      ..++..+|.++...|   ++++|+.+|++++++.|++      ..++.
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ---KFDEAAASLQKEKSMYKEMENYPTCYKKCI  199 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            99998 99999999999999887643      567899999999999   9999999999999987653      34788


Q ss_pred             HHHHHHHHhhhhhhhhhhhHHH
Q psy12642        144 GLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       144 ~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      .++.++..+|++.+|.....+.
T Consensus       200 ~~g~~~~~~g~~~~A~~~~~~a  221 (307)
T 2ifu_A          200 AQVLVQLHRADYVAAQKCVRES  221 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            8999999999999997765554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2.4e-15  Score=100.31  Aligned_cols=111  Identities=14%  Similarity=0.098  Sum_probs=103.7

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS   80 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~   80 (201)
                      ...+..++..|++++|+..|+++++.+|++   ..++..+|.++...|++++|+..+++++..+|+++.+++.+|.++..
T Consensus        32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  111 (148)
T 2dba_A           32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK  111 (148)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence            345677889999999999999999999998   89999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      .|++++|+.+|++++..+|++..++..++.+...
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          112 LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9999999999999999999999999888877543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.67  E-value=8e-17  Score=128.19  Aligned_cols=128  Identities=12%  Similarity=0.004  Sum_probs=116.1

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL  112 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  112 (201)
                      .+..+..+|.++...|++++|+..++++++.+|++..++..+|.+|..+|++++|+..+++++.++|+++.++..+|.++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34455667888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH--HHHhhhhhhhhhhhH
Q psy12642        113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALS--CHQVLTSAKCSAAKK  163 (201)
Q Consensus       113 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~  163 (201)
                      ...|   ++++|+..|+++++++|++..++..++.+  +...|++++|.....
T Consensus        85 ~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           85 MALG---KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHT---CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999   99999999999999999999999999998  888899999966433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.67  E-value=5.6e-15  Score=105.37  Aligned_cols=159  Identities=14%  Similarity=0.043  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q psy12642         17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG----DYAKAVFCME   92 (201)
Q Consensus        17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~   92 (201)
                      .+|+.+|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+  ++++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3578889998875  6899999999999999999999999999987  4689999999999998 7    9999999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCc--ccHHHHHHHHHHHHH----hhhhhhhhhhh
Q psy12642         93 ELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNE--KNIRALYGLALSCHQ----VLTSAKCSAAK  162 (201)
Q Consensus        93 ~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~a~~~~  162 (201)
                      +++  ++.++.+++.+|.++..    .+   ++++|+.+|+++++..|  +++.+++.|+.+|..    .++..+|....
T Consensus        78 ~A~--~~g~~~a~~~Lg~~y~~g~g~~~---d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           78 KAV--EAGSKSGEIVLARVLVNRQAGAT---DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHH--HTTCHHHHHHHHHHHTCGGGSSC---CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHH--HCCCHHHHHHHHHHHHcCCCCcc---CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            996  46789999999999987    66   99999999999999998  569999999999999    88888887766


Q ss_pred             HHHHHH-HhHHHHHHHHHHHHhhh
Q psy12642        163 KKEISK-QMMWVSKHLARQYEEQQ  185 (201)
Q Consensus       163 ~~~~~~-~~~~~~~~l~~~y~~~~  185 (201)
                      .+.... -...+...|...|....
T Consensus       153 ~~A~~~~~~~~a~~~Lg~~y~~g~  176 (212)
T 3rjv_A          153 KGSSSLSRTGYAEYWAGMMFQQGE  176 (212)
T ss_dssp             HHHHHTSCTTHHHHHHHHHHHHCB
T ss_pred             HHHHHcCCCHHHHHHHHHHHHcCC
Confidence            666543 34456667788887654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.67  E-value=1.5e-15  Score=120.34  Aligned_cols=125  Identities=12%  Similarity=-0.020  Sum_probs=110.9

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETN---------------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE   69 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~   69 (201)
                      ..+..++..|+|++|+..|+++++.+|.+               ..++..+|.++..+|++++|+..+++++.++|+++.
T Consensus       273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~  352 (457)
T 1kt0_A          273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK  352 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence            35667889999999999999999999988               799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHH-HHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAIS-HYLMAI  132 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~-~~~~al  132 (201)
                      +++.+|.+|..+|++++|+..|++++.++|++..++..++.++...+   +++++.+ .|.+.+
T Consensus       353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~---~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK---EHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH---HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999   8887764 344333

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.67  E-value=1.3e-16  Score=103.16  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=89.9

Q ss_pred             HcCCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642         46 AKNKIPEAIKELTEYLKK---FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE  122 (201)
Q Consensus        46 ~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~  122 (201)
                      .+|++++|+..|+++++.   +|+++.++..+|.+|..+|++++|+.+|++++..+|+++.+++.+|.++...|   +++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~   78 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG---RYE   78 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC---CHH
Confidence            468999999999999999   68889999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642        123 LAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus       123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      +|+..|++++...|+++........+...
T Consensus        79 ~A~~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           79 QGVELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            99999999999999988765544444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.67  E-value=1.8e-15  Score=106.23  Aligned_cols=153  Identities=14%  Similarity=0.116  Sum_probs=123.4

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhcCC
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ++..|++++|.+.++.+....+....++..+|.++...|++++|+..+++++..      .|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            456899999999666655544477899999999999999999999999999983      34446788999999999999


Q ss_pred             HHHHHHHHHHHhhc---CCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------cHHHHHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLH---HPHN----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------NIRALYGLALSCH  150 (201)
Q Consensus        84 ~~~A~~~~~~al~~---~~~~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~  150 (201)
                      +++|+.++++++..   .+++    ..++..+|.++...|   ++++|+.++++++...+.      ...++..++.++.
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  158 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG---DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ  158 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            99999999999987   4433    456889999999999   999999999999976432      2345689999999


Q ss_pred             HhhhhhhhhhhhHHH
Q psy12642        151 QVLTSAKCSAAKKKE  165 (201)
Q Consensus       151 ~~~~~~~a~~~~~~~  165 (201)
                      ..|++++|.....+.
T Consensus       159 ~~g~~~~A~~~~~~a  173 (203)
T 3gw4_A          159 QEKNLLEAQQHWLRA  173 (203)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHH
Confidence            999999996654433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=2e-15  Score=122.41  Aligned_cols=142  Identities=8%  Similarity=0.021  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAKN--KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG-DYAKAVFCME   92 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~   92 (201)
                      +++++.+++++++.+|.+..+|..++.++...+  ++++++..+.++++.+|.+..+|...+.+....| .++++++++.
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            999999999999999999999999999999999  7799999999999999999999999999999999 9999999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHcCC-----------cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhh
Q psy12642         93 ELFLHHPHNHLLHQRYADILYTQGG-----------LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK  157 (201)
Q Consensus        93 ~al~~~~~~~~~~~~la~~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  157 (201)
                      +++..+|.|..+|..++.++.....           ...++++++++.+++.++|++..+|++++.++...+...+
T Consensus       169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            9999999999999999999888521           1278999999999999999999999999999998877444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.66  E-value=8.2e-16  Score=114.35  Aligned_cols=105  Identities=13%  Similarity=0.018  Sum_probs=101.7

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642         31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD  110 (201)
Q Consensus        31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  110 (201)
                      |.++..+..+|..+...|++++|+..+++++..+|+++.++..+|.+|...|++++|+..+++++..+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642        111 ILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus       111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      ++...|   ++++|+..|+++++++|++
T Consensus        81 ~~~~~g---~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           81 CQLEME---SYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcC---CHHHHHHHHHHHHHhCccc
Confidence            999999   9999999999999999975

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.66  E-value=7.5e-15  Score=118.09  Aligned_cols=162  Identities=9%  Similarity=-0.004  Sum_probs=139.2

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHh
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNT-AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL-YLS   80 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~   80 (201)
                      ++.++..+...|++++|...|+++++..|.++ .+|..++.++...|++++|+..|+++++..|.+...+...+.+ +..
T Consensus       324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~  403 (530)
T 2ooe_A          324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  403 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            34566677889999999999999999999885 6999999999999999999999999999988887777766655 346


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH----HHHHHHHHHHHHhhhhh
Q psy12642         81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI----RALYGLALSCHQVLTSA  156 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~  156 (201)
                      .|++++|...|+++++.+|+++.+|..++.++...|   +.++|...|++++...|.++    ..|..........|+.+
T Consensus       404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g---~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~  480 (530)
T 2ooe_A          404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  480 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT---CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred             cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC---CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999   99999999999999876544    37777788888889888


Q ss_pred             hhhhhhHHHHH
Q psy12642        157 KCSAAKKKEIS  167 (201)
Q Consensus       157 ~a~~~~~~~~~  167 (201)
                      .+.....+...
T Consensus       481 ~~~~~~~r~~~  491 (530)
T 2ooe_A          481 SILKVEKRRFT  491 (530)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77554444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.66  E-value=6.5e-16  Score=104.02  Aligned_cols=93  Identities=17%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIP----------EAIKELTEYLKKFMTDQETWQELCDLYL   79 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~l~~~~~   79 (201)
                      ..+.+.|++|+..++++++.+|+++.++..+|.++...++++          +|+..|+++++++|++..+|+.+|.+|.
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            345567888888888888888888888888888888777654          7777777777777777777777777776


Q ss_pred             hcC-----------CHHHHHHHHHHHhhcCCCCH
Q psy12642         80 SEG-----------DYAKAVFCMEELFLHHPHNH  102 (201)
Q Consensus        80 ~~~-----------~~~~A~~~~~~al~~~~~~~  102 (201)
                      .+|           ++++|+.+|++++.++|++.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            654           45555555555555555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.65  E-value=5.8e-16  Score=104.23  Aligned_cols=101  Identities=15%  Similarity=0.124  Sum_probs=88.9

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642         46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY----------AKAVFCMEELFLHHPHNHLLHQRYADILYTQ  115 (201)
Q Consensus        46 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  115 (201)
                      +.+.+++|+..++++++.+|+++++|..+|.++...+++          ++|+..|+++++++|++..+++++|.+|...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999998875          5999999999999999999999999999876


Q ss_pred             CC--------cccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642        116 GG--------LENIELAISHYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus       116 ~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~l~  146 (201)
                      |.        ..++++|+.+|+++++++|++...+..+.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            30        01799999999999999999876555444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.65  E-value=2.3e-14  Score=108.23  Aligned_cols=144  Identities=11%  Similarity=0.018  Sum_probs=132.7

Q ss_pred             HHhhhhccCHH-HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy12642          7 IIGCFHFFRYE-EALEHLETIIKIDETNTAARKRKICILKAKNK----------IPEAIKELTEYLKKFMTDQETWQELC   75 (201)
Q Consensus         7 ~~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~   75 (201)
                      +....+.|.++ +|+..+++++..+|.+..+|..++.+....+.          +++++.++..++..+|.+..+|...+
T Consensus        36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~  115 (331)
T 3dss_A           36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC  115 (331)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34455667776 89999999999999999999999999988766          68999999999999999999999999


Q ss_pred             HHHHhcC--CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642         76 DLYLSEG--DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLEN-IELAISHYLMAINLNEKNIRALYGLALSCHQV  152 (201)
Q Consensus        76 ~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  152 (201)
                      .+....|  .+++++.++.+++..+|.|..+|...+.+....+   . ++++++++.+++..+|.+..+|.+++.+...+
T Consensus       116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~---~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA---VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            9999998  4999999999999999999999999999999999   7 69999999999999999999999999999988


Q ss_pred             h
Q psy12642        153 L  153 (201)
Q Consensus       153 ~  153 (201)
                      +
T Consensus       193 ~  193 (331)
T 3dss_A          193 H  193 (331)
T ss_dssp             S
T ss_pred             h
Confidence            4

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.65  E-value=7e-18  Score=128.73  Aligned_cols=123  Identities=13%  Similarity=0.040  Sum_probs=96.9

Q ss_pred             hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHhcCCHHHHHHH
Q psy12642         28 KIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-----------------ETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        28 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      +..+.....+..+|..++..|++++|+..|++++...|++.                 .++..+|.+|..+|++++|+.+
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34456678889999999999999999999999999999877                 4899999999999999999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         91 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        91 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      +++++..+|+++.+++.+|.++...|   ++++|+..|+++++++|++..++..++.+.....
T Consensus       253 ~~~al~~~p~~~~a~~~lg~a~~~~g---~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~  312 (338)
T 2if4_A          253 CNIVLTEEEKNPKALFRRGKAKAELG---QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK  312 (338)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999   9999999999999999999999999998865543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.64  E-value=5.2e-15  Score=114.17  Aligned_cols=119  Identities=8%  Similarity=0.009  Sum_probs=112.0

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHh----------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIK----------------IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ   68 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~----------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~   68 (201)
                      ..+..++..|++++|+..|+++++                .+|.+..++..+|.++..+|++++|+..++++++.+|+++
T Consensus       228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  307 (370)
T 1ihg_A          228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT  307 (370)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH
Confidence            356678899999999999999998                7888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHH
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAIS  126 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~  126 (201)
                      .+++.+|.+|..+|++++|+..|++++.++|++..++..++.++...+   +++++.+
T Consensus       308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~---~~~~a~k  362 (370)
T 1ihg_A          308 KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK---AQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHH
Confidence            999999999999999999999999999999999999999999999888   8777754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.63  E-value=6.7e-15  Score=95.83  Aligned_cols=112  Identities=11%  Similarity=0.136  Sum_probs=102.3

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQELCD   76 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~   76 (201)
                      ...+..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++       +.++..+|.
T Consensus         8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~   87 (131)
T 1elr_A            8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence            3456678889999999999999999999999999999999999999999999999999998877       889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      ++...|++++|+.+|++++...| ++.....++.+....+
T Consensus        88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 5888888887766544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=2.9e-14  Score=115.62  Aligned_cols=145  Identities=12%  Similarity=0.008  Sum_probs=133.2

Q ss_pred             hhhhccCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy12642          9 GCFHFFRY-EEALEHLETIIKIDETNTAARKRKICILKAKNK----------IPEAIKELTEYLKKFMTDQETWQELCDL   77 (201)
Q Consensus         9 ~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~   77 (201)
                      .....|.+ ++|++.+++++..+|.+..+|..++.++...|+          +++++..+++++..+|++..+|...+.+
T Consensus        37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~  116 (567)
T 1dce_A           37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  116 (567)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34444444 577999999999999999999999999999988          9999999999999999999999999999


Q ss_pred             HHhcC--CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh
Q psy12642         78 YLSEG--DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS  155 (201)
Q Consensus        78 ~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  155 (201)
                      ....|  ++++++.+++++++.+|.|..+|...+.+....+.  .++++++++.++++.+|.+..+|.+++.++..++..
T Consensus       117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~--~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC--CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence            99999  77999999999999999999999999999988773  589999999999999999999999999999987544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.63  E-value=7.4e-15  Score=93.11  Aligned_cols=100  Identities=17%  Similarity=0.182  Sum_probs=94.3

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHh
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT--DQETWQELCDLYLS   80 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~   80 (201)
                      ....+..++..|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.  +..++..+|.++..
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~   88 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY   88 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            3446677889999999999999999999999999999999999999999999999999999999  99999999999999


Q ss_pred             c-CCHHHHHHHHHHHhhcCCCCH
Q psy12642         81 E-GDYAKAVFCMEELFLHHPHNH  102 (201)
Q Consensus        81 ~-~~~~~A~~~~~~al~~~~~~~  102 (201)
                      . |++++|+.++++++...|.++
T Consensus        89 ~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           89 IEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HhCCHHHHHHHHHHHhhcccCCC
Confidence            9 999999999999999998753

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.63  E-value=2.4e-13  Score=102.69  Aligned_cols=137  Identities=9%  Similarity=0.015  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAKNK--IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD-YAKAVFCME   92 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~   92 (201)
                      +++++.+++.++..+|.+..+|..++.++...++  +++++.++.+++..+|.+..+|...+.+....|. +++++.++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            7899999999999999999999999999999984  8999999999999999999999999999999998 699999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHcCC-----------cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642         93 ELFLHHPHNHLLHQRYADILYTQGG-----------LENIELAISHYLMAINLNEKNIRALYGLALSCHQV  152 (201)
Q Consensus        93 ~al~~~~~~~~~~~~la~~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  152 (201)
                      +++..+|.|..+|..++.++....+           ...++++++++.+++..+|++..+|+.+.-++...
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999887721           02689999999999999999999998776666554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.62  E-value=1.9e-14  Score=111.01  Aligned_cols=158  Identities=15%  Similarity=0.013  Sum_probs=100.9

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hcCCCHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDE------TNTAARKRKICILKAKNKIPEAIKELTEYLK-----KFMTDQETWQEL   74 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~l   74 (201)
                      .+..+...|++++|+..|+++++..+      ....++..+|.++...|++++|+..+++++.     .+|..+.++..+
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  267 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL  267 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence            44556677777777777777776422      2235666777777777777777777777777     556666677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLHHP-----HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC  149 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  149 (201)
                      |.++...|++++|+.++++++...+     .....+..++.++...+....+.+|+..+++ ....|.....+..+|.+|
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y  346 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVF  346 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHH
Confidence            7777777777777777777776632     2233445556666555511116677776665 233345555666777777


Q ss_pred             HHhhhhhhhhhhhHH
Q psy12642        150 HQVLTSAKCSAAKKK  164 (201)
Q Consensus       150 ~~~~~~~~a~~~~~~  164 (201)
                      ...|++++|....++
T Consensus       347 ~~~g~~~~A~~~~~~  361 (378)
T 3q15_A          347 ESSCHFEQAAAFYRK  361 (378)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHH
Confidence            777777777554433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.62  E-value=5.7e-13  Score=106.15  Aligned_cols=160  Identities=15%  Similarity=0.025  Sum_probs=120.3

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGDY   84 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~   84 (201)
                      .+++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  +++.+++.+|.+|..    .+++
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            68888888888888765  567788888888888    88888888888888763  577888888888887    7888


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH----hhhhh
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ----VLTSA  156 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~  156 (201)
                      ++|+.+|+++...  +++.+++.+|.++..    .+   ++++|+.+|+++++.  +++.+++.++.+|..    .++.+
T Consensus       132 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~---d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          132 AESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTR---DYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHH
Confidence            8888888888754  577888888888876    55   788888888888876  467788888888887    77777


Q ss_pred             hhhhhhHHHHHHHhHHHHHHHHHHHHh
Q psy12642        157 KCSAAKKKEISKQMMWVSKHLARQYEE  183 (201)
Q Consensus       157 ~a~~~~~~~~~~~~~~~~~~l~~~y~~  183 (201)
                      +|....++....-...+...+...|..
T Consensus       205 ~A~~~~~~a~~~~~~~a~~~lg~~y~~  231 (490)
T 2xm6_A          205 ISAQWYRKSATSGDELGQLHLADMYYF  231 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            776655554433333444445555543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.61  E-value=1.8e-14  Score=108.25  Aligned_cols=151  Identities=12%  Similarity=0.082  Sum_probs=123.4

Q ss_pred             hccCHHHHHHHHHHHHhcCc--------cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHH
Q psy12642         12 HFFRYEEALEHLETIIKIDE--------TN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQEL   74 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~--------~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l   74 (201)
                      ..|++++|.++++++.+..+        +.   ...+...+.+|...|++++|+..+.+++...+..      ..++..+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45788888888887776432        11   1345566788999999999999999999876533      4578899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc------HHHH
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLHHPH--N----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRAL  142 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~  142 (201)
                      |.+|..+|++++|+.+|++++.+.+.  +    ..++..+|.++.. |   ++++|+.+|++++.+.|..      ..++
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~  158 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L---DLSKAVHLYQQAAAVFENEERLRQAAELI  158 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            99999999999999999999987432  2    3578899999988 9   9999999999999988753      5788


Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        143 YGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       143 ~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      .+++.++..+|++++|.....+..
T Consensus       159 ~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          159 GKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999987665544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.61  E-value=5.3e-14  Score=106.79  Aligned_cols=139  Identities=12%  Similarity=0.099  Sum_probs=131.4

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-G-DYAKAVF   89 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~-~~~~A~~   89 (201)
                      .+..++|+..+++++..+|.+..+|..++.++...| .+++++..+..++..+|++..+|...+.+.... + ++++++.
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            445578999999999999999999999999999999 599999999999999999999999999999988 8 8999999


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH--------HHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIE--------LAISHYLMAINLNEKNIRALYGLALSCHQVLT  154 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  154 (201)
                      ++++++..+|.|..+|...+.+....+   .++        +++++++++++.+|.|..+|.+.+.+...++.
T Consensus       147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~---~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          147 YIHGSLLPDPKNYHTWAYLHWLYSHFS---TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHTSSCTTCHHHHHHHHHHHHHHH---HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhc---cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999999999998888   776        99999999999999999999999999999886

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.61  E-value=8.3e-15  Score=107.97  Aligned_cols=139  Identities=12%  Similarity=-0.044  Sum_probs=122.2

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHh
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD--QETWQELCDLYLS   80 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~   80 (201)
                      .+.|+..+...|+|++|.+.|+.++..+|.+. +.+.+|.++...+++++|+..++.+....+..  ..+++.+|.++..
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence            35688889999999999999999999999998 99999999999999999999999776643221  3589999999999


Q ss_pred             cCCHHHHHHHHHHHhhcC--CC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642         81 EGDYAKAVFCMEELFLHH--PH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus        81 ~~~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  146 (201)
                      +|++++|+.+|++++.-.  |. .+.+++.+|.++..+|   +.++|...|++++..+|+ ..+...|.
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG---r~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG---NESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            999999999999998544  55 5679999999999999   999999999999999999 77766664

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.60  E-value=5.4e-13  Score=106.30  Aligned_cols=163  Identities=13%  Similarity=0.084  Sum_probs=95.6

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CC
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-----GD   83 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----~~   83 (201)
                      .+++++|+.+|+++.+.  .++.++..+|.++..    .+++++|+.+++++.+.  +++.+++.+|.+|...     ++
T Consensus       236 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~  311 (490)
T 2xm6_A          236 TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN  311 (490)
T ss_dssp             CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC
Confidence            45666666666665543  334555566666665    56666666666665543  4556666666666655     66


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH----hhhhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ----VLTSAKCS  159 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~  159 (201)
                      +++|+.+|++++..  .++.+++.+|.++...|...++++|+.+|+++++.  +++.+++.++.+|..    .++.++|.
T Consensus       312 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~  387 (490)
T 2xm6_A          312 REQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAA  387 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            66666666666553  34556666666665543333566666666666665  446666666666666    56666665


Q ss_pred             hhhHHHHHHHhHHHHHHHHHHHHh
Q psy12642        160 AAKKKEISKQMMWVSKHLARQYEE  183 (201)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~~~y~~  183 (201)
                      ...++....-...+...+...|..
T Consensus       388 ~~~~~A~~~~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          388 IWMRKAAEQGLSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHc
Confidence            555554443344455555555554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.60  E-value=4.5e-14  Score=107.14  Aligned_cols=147  Identities=13%  Similarity=0.046  Sum_probs=134.0

Q ss_pred             hhhhcc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          9 GCFHFF-RYEEALEHLETIIKIDETNTAARKRKICILKAK-N-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         9 ~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+...| .+++++.+++.++..+|.+..+|..++.++... + ++++++.++.+++..+|.+..+|...+.+....|.++
T Consensus        97 iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A           97 LLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            344566 599999999999999999999999999999988 7 8999999999999999999999999999998888887


Q ss_pred             --------HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC----cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         86 --------KAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        86 --------~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                              +++.++++++..+|.|..+|..++.++...+.    ...++++++++.+++..+|++..+|.++..++.+.|
T Consensus       177 ~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          177 RISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence                    99999999999999999999999999988871    012799999999999999999999999999998887


Q ss_pred             hh
Q psy12642        154 TS  155 (201)
Q Consensus       154 ~~  155 (201)
                      ..
T Consensus       257 ~~  258 (349)
T 3q7a_A          257 LP  258 (349)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.58  E-value=4.7e-13  Score=102.70  Aligned_cols=158  Identities=11%  Similarity=0.026  Sum_probs=130.8

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNT-----AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------ETWQE   73 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~   73 (201)
                      +.+..+...|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++...|...      .++..
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            345566789999999999999999876542     3677889999999999999999999998765432      34677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-----cHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLHH--------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-----NIR  140 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~  140 (201)
                      +|.++...|++++|+..+++++...        |....++..+|.++...|   ++++|..++++++...|.     ...
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA---RLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            8999999999999999999999764        333557788999999999   999999999999987764     356


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        141 ALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      ++..++.++...|+.++|.....+.
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7889999999999999997655433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.58  E-value=1.2e-12  Score=97.48  Aligned_cols=166  Identities=13%  Similarity=0.076  Sum_probs=128.7

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--
Q psy12642         30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN--  101 (201)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--  101 (201)
                      +|.....+...+..+...|++++|+..+.+++...|...      ..+..+|.++...|++++|+.++++++...+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            345556667788899999999999999999999887664      345668899999999999999999999765443  


Q ss_pred             ----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHH---cCCccc----HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q psy12642        102 ----HLLHQRYADILYTQGGLENIELAISHYLMAI---NLNEKN----IRALYGLALSCHQVLTSAKCSAAKKKEISKQM  170 (201)
Q Consensus       102 ----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al---~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  170 (201)
                          ..++..+|.++...|   ++++|+.+|++++   +..|++    ..+++++|.+|...|++++|.....+...-..
T Consensus       151 ~~~~~~~~~~lg~~y~~~~---~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                558899999999999   9999999999999   444543    26899999999999999999876655543221


Q ss_pred             --------HHHHHHHHHHHHhhhcchHH-HHHHHhhc
Q psy12642        171 --------MWVSKHLARQYEEQQGNTET-LTELMSAL  198 (201)
Q Consensus       171 --------~~~~~~l~~~y~~~~~~~~~-~~~~~~~~  198 (201)
                              ..+...+...|..+...+++ ...+.+++
T Consensus       228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence                    23444567777777777666 33344444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.57  E-value=2.9e-14  Score=95.95  Aligned_cols=123  Identities=12%  Similarity=0.031  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------H
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN------H  102 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~  102 (201)
                      .++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.++++++...+..      .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            344444444444444444444444444433211      1234444444444444444444444444432211      2


Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc------ccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        103 LLHQRYADILYTQGGLENIELAISHYLMAINLNE------KNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      .++..+|.++...|   ++++|+.++++++...+      ....++..++.++...|++++|..
T Consensus        90 ~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  150 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQ---DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  150 (164)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence            23444444444444   44444444444443321      112344444444444444444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.57  E-value=1.1e-13  Score=101.98  Aligned_cols=153  Identities=10%  Similarity=-0.060  Sum_probs=121.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHH---------------------------------------------
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRK---------------------------------------------   40 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~---------------------------------------------   40 (201)
                      .++++ ..+++.+|.+.|.+++..+|..+.+|..+                                             
T Consensus        13 ~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y   91 (282)
T 4f3v_A           13 SAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY   91 (282)
T ss_dssp             HHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT
T ss_pred             HHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc
Confidence            44555 57999999999999999999999988866                                             


Q ss_pred             -----------------HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--
Q psy12642         41 -----------------ICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN--  101 (201)
Q Consensus        41 -----------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--  101 (201)
                                       +.++...|++++|.+.|..++...|++. +.+.+|.+++..++|++|+..|++++...+..  
T Consensus        92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~  170 (282)
T 4f3v_A           92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA  170 (282)
T ss_dssp             CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred             cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence                             2456667888888888888887788777 88888888888888888888888776643221  


Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC--cc-cHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642        102 HLLHQRYADILYTQGGLENIELAISHYLMAINLN--EK-NIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      ..+++.+|.++...|   ++++|+.+|++++...  |. .+.+++.++.|+.++|+.++|.....
T Consensus       171 ~~a~~~LG~al~~LG---~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          171 GAAGVAHGVAAANLA---LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            347888899988899   8999999999888554  54 66788889999999998888855443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.57  E-value=1.7e-13  Score=108.41  Aligned_cols=170  Identities=12%  Similarity=0.077  Sum_probs=115.1

Q ss_pred             HHHhhhhcc---CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-
Q psy12642          6 YIIGCFHFF---RYEEALEHLETIIKIDETNTAARKRKICILKAK----NKIPEAIKELTEYLKKFMTDQETWQELCDL-   77 (201)
Q Consensus         6 ~~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-   77 (201)
                      ++..+...|   ++++|+.+|+++.+.+|.....++.+|.+|...    +++++|+.+|+++.   |+++.+++.+|.+ 
T Consensus       182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~  258 (452)
T 3e4b_A          182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLL  258 (452)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHH
T ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence            344455566   788888888888888877777777778777654    67788888888776   7777888888877 


Q ss_pred             H--HhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---
Q psy12642         78 Y--LSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG-GLENIELAISHYLMAINLNEKNIRALYGLALSCHQ---  151 (201)
Q Consensus        78 ~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---  151 (201)
                      +  ...+++++|+.+|+++...  +++.+++.+|.++.... ...++++|+.+|+++.   |+++.++++|+.+|..   
T Consensus       259 ~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g  333 (452)
T 3e4b_A          259 YDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYL  333 (452)
T ss_dssp             HHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTT
T ss_pred             HhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCC
Confidence            3  4677888888888887743  47777888887776431 1236788888888877   7777788888877776   


Q ss_pred             -hhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHh
Q psy12642        152 -VLTSAKCSAAKKKEISKQMMWVSKHLARQYEE  183 (201)
Q Consensus       152 -~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~  183 (201)
                       ..+..+|..-..+....-...+...|...|..
T Consensus       334 ~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          334 GKVYPQKALDHLLTAARNGQNSADFAIAQLFSQ  366 (452)
T ss_dssp             SSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHh
Confidence             22556665544444433333344445555543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.57  E-value=9.2e-14  Score=89.21  Aligned_cols=100  Identities=11%  Similarity=0.093  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         52 EAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        52 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      .|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|   ++++|+..|+++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG---DRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence            46677777777777777777777777777777777777777777777777777777777777777   777777777777


Q ss_pred             HcCCcc--cHHHHHHHHHHHHHhhh
Q psy12642        132 INLNEK--NIRALYGLALSCHQVLT  154 (201)
Q Consensus       132 l~~~p~--~~~~~~~l~~~~~~~~~  154 (201)
                      +++.|.  +......+......+++
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHHhcc
Confidence            777764  33444445544444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.55  E-value=8.9e-14  Score=88.25  Aligned_cols=91  Identities=21%  Similarity=0.226  Sum_probs=77.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc------HH
Q psy12642         67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IR  140 (201)
Q Consensus        67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~  140 (201)
                      ++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|   ++++|+..|+++++++|++      ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG---EYTQAIQMCQQGLRYTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            35678888888888888888888888888888888888888888888888   8888888888888888887      78


Q ss_pred             HHHHHHHHHHHhhhhhhhhh
Q psy12642        141 ALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~  160 (201)
                      +++.++.++..+|+...+..
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHHhHhhhHh
Confidence            88888888888887777754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.55  E-value=8e-14  Score=89.51  Aligned_cols=98  Identities=17%  Similarity=0.101  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         18 EALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        18 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      +|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC--CHHHHHHHHHHHHHc
Q psy12642         98 HPH--NHLLHQRYADILYTQ  115 (201)
Q Consensus        98 ~~~--~~~~~~~la~~~~~~  115 (201)
                      .|.  +......+...+...
T Consensus        83 ~~~~~~~~~~~~l~~~l~~l  102 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRRL  102 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHh
Confidence            874  444444444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.53  E-value=6.7e-14  Score=98.19  Aligned_cols=145  Identities=14%  Similarity=0.071  Sum_probs=116.9

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCC----HHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIK------IDETNTAARKRKICILKAKNKIPEAIKELTEYLKK---FMTD----QETW   71 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~----~~~~   71 (201)
                      ..+..+...|++++|+..+++++.      ..|....++..+|.++...|++++|+..+++++..   .+++    ..++
T Consensus        31 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  110 (203)
T 3gw4_A           31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA  110 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence            455667889999999999999999      55677789999999999999999999999999987   4533    4568


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELFLHHP--HNH----LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL  145 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  145 (201)
                      ..+|.++...|++++|+.++++++...+  .++    .++..+|.++...|   ++++|+.++++++++....... ...
T Consensus       111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-~~~  186 (203)
T 3gw4_A          111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK---NLLEAQQHWLRARDIFAELEDS-EAV  186 (203)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHcCCH-HHH
Confidence            8899999999999999999999997532  222    34689999999999   9999999999999876542221 334


Q ss_pred             HHHHHHhh
Q psy12642        146 ALSCHQVL  153 (201)
Q Consensus       146 ~~~~~~~~  153 (201)
                      +.+...++
T Consensus       187 ~~~~~~~~  194 (203)
T 3gw4_A          187 NELMTRLN  194 (203)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhccc
Confidence            44444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.53  E-value=1.3e-13  Score=84.39  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=41.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL  112 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  112 (201)
                      ++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555444


Q ss_pred             H
Q psy12642        113 Y  113 (201)
Q Consensus       113 ~  113 (201)
                      .
T Consensus        88 ~   88 (91)
T 1na3_A           88 Q   88 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.53  E-value=3.7e-13  Score=82.31  Aligned_cols=85  Identities=25%  Similarity=0.386  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642         66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL  145 (201)
Q Consensus        66 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  145 (201)
                      .++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...+   ++++|+.+|+++++.+|+++.++..+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            457789999999999999999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy12642        146 ALSCHQVL  153 (201)
Q Consensus       146 ~~~~~~~~  153 (201)
                      +.++...|
T Consensus        84 ~~~~~~~g   91 (91)
T 1na3_A           84 GNAKQKQG   91 (91)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99998765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.5e-14  Score=91.95  Aligned_cols=94  Identities=11%  Similarity=0.085  Sum_probs=84.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQ  106 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~  106 (201)
                      ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            457788999999999999999999999999999999999999999999999999999999999999998      88899


Q ss_pred             HHHHHHHHcCCcccHHHHHHHHH
Q psy12642        107 RYADILYTQGGLENIELAISHYL  129 (201)
Q Consensus       107 ~la~~~~~~~~~~~~~~A~~~~~  129 (201)
                      .+|.++...|   +++.|+..++
T Consensus        83 ~~~~~~~~~~---~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVG---SVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHH---CCCCCSSSSS
T ss_pred             HHHHHHHHHH---hHhhhHhHHH
Confidence            9999998888   7766665544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.52  E-value=2.7e-13  Score=91.15  Aligned_cols=131  Identities=11%  Similarity=-0.019  Sum_probs=111.8

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT------AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETW   71 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~   71 (201)
                      ...+..+...|++++|+..++++++..+...      .++..+|.++...|++++|+..+++++...+..      ..++
T Consensus        13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   92 (164)
T 3ro3_A           13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC   92 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            3456668889999999999999998765432      588899999999999999999999999876543      5678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELFLHHPH--N----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      ..+|.++...|++++|+.++++++...+.  +    ...+..+|.++...|   ++++|+.++++++++.+.
T Consensus        93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG---NHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999987542  2    357889999999999   999999999999987554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.51  E-value=6.5e-12  Score=96.33  Aligned_cols=157  Identities=12%  Similarity=-0.061  Sum_probs=125.8

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKID--------ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-----QETWQ   72 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~   72 (201)
                      .+..+...|++++|+..+++++...        |....++..+|.++...|++++|...+++++...|..     ..++.
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            4556788999999999999999865        3455677889999999999999999999999987653     45788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCC--CCHHHHH-----HHHHHHHHcCCcccHHHHHHHHHHHHcCCccc----HHH
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHP--HNHLLHQ-----RYADILYTQGGLENIELAISHYLMAINLNEKN----IRA  141 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~-----~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~  141 (201)
                      .+|.++...|++++|...+++++...+  ..+..+.     ..+.++...|   ++++|..++.+++...|..    ...
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG---DKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC---CHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            899999999999999999999987632  2221121     3445577899   9999999999999877643    346


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        142 LYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       142 ~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      +..++.++...|+.++|.......
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a  279 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEEL  279 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            788999999999999997655443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.51  E-value=2.3e-12  Score=96.02  Aligned_cols=161  Identities=14%  Similarity=0.088  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHH
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQE------TWQELCDLYLSEGDYAKAVFCMEELFLHHPHN------HLL  104 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~  104 (201)
                      +...+..+...|++++|+..+++++...+.++.      .+..+|.++...|++++|+.+|++++...+..      ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            334577888999999999999999998877755      23358889999999999999999999864432      336


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHc-------CCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--------
Q psy12642        105 HQRYADILYTQGGLENIELAISHYLMAIN-------LNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ--------  169 (201)
Q Consensus       105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------  169 (201)
                      +..+|.++...|   ++++|+.+|+++++       ..|....+++++|.+|..+|++++|.....+...-.        
T Consensus       158 ~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~  234 (293)
T 3u3w_A          158 ENAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            899999999999   99999999999994       334456689999999999999999977555443211        


Q ss_pred             hHHHHHHHHHHHHhhhcc-hHHHHHHHhhccC
Q psy12642        170 MMWVSKHLARQYEEQQGN-TETLTELMSALQV  200 (201)
Q Consensus       170 ~~~~~~~l~~~y~~~~~~-~~~~~~~~~~~~~  200 (201)
                      ...+...+...|..+... ++++..+.+++.|
T Consensus       235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            133455677778777754 6677777666543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.50  E-value=1.9e-12  Score=96.62  Aligned_cols=145  Identities=16%  Similarity=0.057  Sum_probs=114.1

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHH-
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDE--TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT----DQETWQELCD-   76 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~-   76 (201)
                      ++.+..+...|++++|++.+.+.+..+|  .+..++...+.++..+|+.+.|.+.+++..+.+|+    +..+...++. 
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea  183 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES  183 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence            3455667778999999999999988886  78899999999999999999999999998888883    2233344443 


Q ss_pred             -HHHhcC--CHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC----------CcccHHH
Q psy12642         77 -LYLSEG--DYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINL----------NEKNIRA  141 (201)
Q Consensus        77 -~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~  141 (201)
                       +.+..|  ++.+|...|+++....|+  ++..++.   ++..+|   ++++|...++..++.          +|+++.+
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g---~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~  257 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQR---NIAEAQGIVELLLSDYYSVEQKENAVLYKPTF  257 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHT---CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcC---CHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence             355555  899999999998888776  2333333   788889   999999999977776          4778999


Q ss_pred             HHHHHHHHHHhhh
Q psy12642        142 LYGLALSCHQVLT  154 (201)
Q Consensus       142 ~~~l~~~~~~~~~  154 (201)
                      +.+++.+...+|+
T Consensus       258 LaN~i~l~~~lgk  270 (310)
T 3mv2_B          258 LANQITLALMQGL  270 (310)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCh
Confidence            9899999988886

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.49  E-value=4.8e-12  Score=100.04  Aligned_cols=165  Identities=12%  Similarity=0.062  Sum_probs=133.2

Q ss_pred             HHhhhhcc----CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642          7 IIGCFHFF----RYEEALEHLETIIKIDETNTAARKRKICILKAKN---KIPEAIKELTEYLKKFMTDQETWQELCDLYL   79 (201)
Q Consensus         7 ~~~~~~~~----~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~   79 (201)
                      +..+...+    +.+++..+++.+...+|.   +++.+|.++...|   ++++|+..|+++....|.+...++.+|.+|.
T Consensus       148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~  224 (452)
T 3e4b_A          148 VLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG  224 (452)
T ss_dssp             HHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34444444    455566666666655554   8899999999999   9999999999999999999999899999997


Q ss_pred             hc----CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH---HcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642         80 SE----GDYAKAVFCMEELFLHHPHNHLLHQRYADILY---TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV  152 (201)
Q Consensus        80 ~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  152 (201)
                      ..    +++++|+.+|+++.   |+++.+++.+|.+++   ..+   ++++|+.+|+++.+.  +++.++++++.+|. .
T Consensus       225 ~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~---d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~  295 (452)
T 3e4b_A          225 DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELG---DVEQMMKYLDNGRAA--DQPRAELLLGKLYY-E  295 (452)
T ss_dssp             CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGC---CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-H
T ss_pred             CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-c
Confidence            65    79999999999998   899999999999943   556   999999999999965  47899999999998 6


Q ss_pred             h-----hhhhhhhhhHHHHHHHhHHHHHHHHHHHHhh
Q psy12642        153 L-----TSAKCSAAKKKEISKQMMWVSKHLARQYEEQ  184 (201)
Q Consensus       153 ~-----~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~~  184 (201)
                      |     +..+|.....+.. .-...+...|...|...
T Consensus       296 G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G  331 (452)
T 3e4b_A          296 GKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRG  331 (452)
T ss_dssp             CSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCC
Confidence            6     7888877666666 44555666677777664

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.46  E-value=8.2e-13  Score=82.80  Aligned_cols=88  Identities=17%  Similarity=0.087  Sum_probs=60.3

Q ss_pred             cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc--cHHH
Q psy12642         64 FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRA  141 (201)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~  141 (201)
                      +|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|   ++++|+..|++++++.|.  +...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLD---RTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhhcCCchhH
Confidence            57777777777777777777777777777777777777777777777777777   777777777777776653  3444


Q ss_pred             HHHHHHHHHHhhh
Q psy12642        142 LYGLALSCHQVLT  154 (201)
Q Consensus       142 ~~~l~~~~~~~~~  154 (201)
                      ...+...+...+.
T Consensus        80 ~~~l~~~l~~~~~   92 (100)
T 3ma5_A           80 LSELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccc
Confidence            4455555554443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.44  E-value=6.8e-12  Score=83.33  Aligned_cols=121  Identities=13%  Similarity=0.021  Sum_probs=104.8

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGDYAKAV   88 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~   88 (201)
                      .+++++|+.+|+++.+..+....    +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            46899999999999988754443    899999989999999999999986  789999999999998    89999999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLA  146 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  146 (201)
                      .+|+++...  .++.+.+.+|.++..    .+   ++++|+.+|+++.+..  ++.+...|+
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~---d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVK---NEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCc---CHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            999999876  789999999999998    67   9999999999999984  445555544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.43  E-value=3.2e-13  Score=84.16  Aligned_cols=90  Identities=18%  Similarity=0.244  Sum_probs=62.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         38 KRKICILKAKNKIPEAIKELTEYLKKFMTDQE-TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        38 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      +..|.++...|++++|+..++++++.+|+++. +++.+|.++...|++++|+.+|++++..+|+++.++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            34566677777777777777777777777777 77777777777777777777777777777777665533        3


Q ss_pred             CcccHHHHHHHHHHHHcCCccc
Q psy12642        117 GLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus       117 ~~~~~~~A~~~~~~al~~~p~~  138 (201)
                         .+.+++..|++++..+|++
T Consensus        76 ---~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 ---MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             ---HHHHHHHHHCCTTHHHHCC
T ss_pred             ---HHHHHHHHHHHHhccCccc
Confidence               5666666666666665553

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.42  E-value=2.2e-12  Score=80.85  Aligned_cols=86  Identities=12%  Similarity=-0.020  Sum_probs=73.2

Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHH
Q psy12642         29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQ  106 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~  106 (201)
                      .+|+++.+++.+|.++...|++++|+..++++++.+|+++.+|+.+|.+|...|++++|+..|++++.+.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            479999999999999999999999999999999999999999999999999999999999999999988653  444444


Q ss_pred             HHHHHHHH
Q psy12642        107 RYADILYT  114 (201)
Q Consensus       107 ~la~~~~~  114 (201)
                      .+..++..
T Consensus        82 ~l~~~l~~   89 (100)
T 3ma5_A           82 ELQDAKLK   89 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.39  E-value=1.2e-12  Score=81.57  Aligned_cols=94  Identities=11%  Similarity=0.028  Sum_probs=83.5

Q ss_pred             CchHHHHHhhhhccCHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642          1 MAPIVYIIGCFHFFRYEEALEHLETIIKIDETNTA-ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYL   79 (201)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~   79 (201)
                      |..+-.+..++..|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..++++++.+|+++.++..      
T Consensus         1 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------   74 (99)
T 2kc7_A            1 MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------   74 (99)
T ss_dssp             CCTHHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred             CcHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence            34566778889999999999999999999999999 99999999999999999999999999999999888744      


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCH
Q psy12642         80 SEGDYAKAVFCMEELFLHHPHNH  102 (201)
Q Consensus        80 ~~~~~~~A~~~~~~al~~~~~~~  102 (201)
                        +.+.+++..|++++..+|+++
T Consensus        75 --~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 --KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             --HHHHHHHHHHCCTTHHHHCCS
T ss_pred             --HHHHHHHHHHHHHhccCcccc
Confidence              567888889988888877653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.35  E-value=2.5e-10  Score=99.05  Aligned_cols=130  Identities=16%  Similarity=0.111  Sum_probs=81.9

Q ss_pred             hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12642         12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCM   91 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   91 (201)
                      ..+++++|.++++++     +.+.+|..+|.++...|++++|+..|.++     +++..|..+|.++.+.|+|++|+++|
T Consensus      1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred             HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            456666666666543     44666666666666666666666666553     55666666666666666666666666


Q ss_pred             HHHhhcCCC---------------------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHH
Q psy12642         92 EELFLHHPH---------------------------NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYG  144 (201)
Q Consensus        92 ~~al~~~~~---------------------------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  144 (201)
                      ..+++..++                           +...+..+|..+...|   ++++|+.+|.++        ..|..
T Consensus      1158 ~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg---~YeeA~~~Y~kA--------~ny~r 1226 (1630)
T 1xi4_A         1158 QMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK---MYDAAKLLYNNV--------SNFGR 1226 (1630)
T ss_pred             HHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhh--------hHHHH
Confidence            555543322                           2234556777777777   777777777775        25667


Q ss_pred             HHHHHHHhhhhhhhhhhh
Q psy12642        145 LALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       145 l~~~~~~~~~~~~a~~~~  162 (201)
                      ++.++.++|++++|....
T Consensus      1227 LA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A         1227 LASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred             HHHHHHHhCCHHHHHHHH
Confidence            777777777777775544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.34  E-value=6.4e-11  Score=92.38  Aligned_cols=155  Identities=10%  Similarity=0.004  Sum_probs=128.2

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNT-----------------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ   68 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~   68 (201)
                      -+..+...|+|++|++.|.++++..|...                 .++..+|.+|...|++++|++.+.+++...+...
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            45667889999999999999999877543                 4578899999999999999999999988765542


Q ss_pred             ------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--
Q psy12642         69 ------ETWQELCDLYLSEGDYAKAVFCMEELFLHHP------HNHLLHQRYADILYTQGGLENIELAISHYLMAINL--  134 (201)
Q Consensus        69 ------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~--  134 (201)
                            .+...+|.++...|++++|+.++++++...+      .-..++..+|.++...|   ++++|+..+++++..  
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK---QYKDSLALINDLLREFK  166 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc---ChHHHHHHHHHHHHHHH
Confidence                  2455678888889999999999999986532      23568889999999999   999999999998764  


Q ss_pred             ----CcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642        135 ----NEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       135 ----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                          .|....++..++.+|...|++.+|.....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  199 (434)
T 4b4t_Q          167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT  199 (434)
T ss_dssp             TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence                34456789999999999999999976544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.33  E-value=2.6e-12  Score=99.95  Aligned_cols=165  Identities=18%  Similarity=0.121  Sum_probs=82.5

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      ...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++..+++     .| +...|..+|..+...|.|++|..+
T Consensus        72 e~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~  144 (449)
T 1b89_A           72 NTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLL  144 (449)
T ss_dssp             --------------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3345555555555554443222 3444445555555555555444442     13 335788889999999999999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q psy12642         91 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQM  170 (201)
Q Consensus        91 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  170 (201)
                      |.++        ..+..+|.++...|   ++++|++.++++     +++.+|..+..++...|+++.|...... .. ..
T Consensus       145 Y~~a--------~n~~~LA~~L~~Lg---~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~-~~  206 (449)
T 1b89_A          145 YNNV--------SNFGRLASTLVHLG---EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-VH  206 (449)
T ss_dssp             HHHT--------TCHHHHHHHHHTTT---CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT-TC
T ss_pred             HHHh--------hhHHHHHHHHHHhc---cHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH-hC
Confidence            9876        35889999999999   999999999998     4688999999999999999999553322 11 11


Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        171 MWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       171 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      +.....+...|+.....++++.-+-++|++
T Consensus       207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          207 ADELEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            122234667788888888887777777765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.28  E-value=1.4e-10  Score=86.62  Aligned_cols=141  Identities=10%  Similarity=0.012  Sum_probs=115.2

Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642         19 ALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TDQETWQELCDLYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        19 A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~   96 (201)
                      |+..+++.+...+.+..++..+|.++...|++++|++++.+.+..+|  ++.+++...+.++..+|+.+.|.+.++++..
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78888888877666677778999999999999999999999999887  7899999999999999999999999999999


Q ss_pred             cCCC----CHHHHHHHHHH--HHHcCCcccHHHHHHHHHHHHcCCcc--cHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         97 HHPH----NHLLHQRYADI--LYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        97 ~~~~----~~~~~~~la~~--~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      .+|+    +......++..  ....|+ .++.+|...|++..+..|+  .+..+++   ++.++|++++|.....
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~-~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNK-ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTC-STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence            9983    23344555444  443332 2799999999999999887  3445555   8999999999977554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.27  E-value=1.8e-10  Score=87.59  Aligned_cols=123  Identities=17%  Similarity=0.068  Sum_probs=100.3

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----HHHHHH----HHHH--HHHhcCCCHHHHHHHHHHHHhcC
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK----IPEAIK----ELTE--YLKKFMTDQETWQELCDLYLSEG   82 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----~~~A~~----~~~~--~~~~~p~~~~~~~~l~~~~~~~~   82 (201)
                      ..++.+|+.+|+++++.+|+++.++..++.++.....    ......    .+..  .+...|.++.++..++..+...|
T Consensus       212 ~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g  291 (372)
T 3ly7_A          212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG  291 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence            4556899999999999999999999988887763211    111111    1221  22467999999999999999899


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI  139 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  139 (201)
                      ++++|+..+++++.++|+ +..+..+|.++...|   ++++|++.|.+|+.++|..+
T Consensus       292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G---~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG---MNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSCSHH
T ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCcC
Confidence            999999999999999975 788899999999999   99999999999999999865

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.26  E-value=5.1e-11  Score=92.79  Aligned_cols=173  Identities=14%  Similarity=0.170  Sum_probs=116.1

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..|+..|+|++|..+|.++        ..+..+|.++..+|++++|++.+.++     +++.+|...+.++...|+++
T Consensus       128 IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~  194 (449)
T 1b89_A          128 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR  194 (449)
T ss_dssp             ---------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHH
Confidence            455677777777777777765        35567788888888888888888777     46777888778888888888


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH--hhhhhhhhhhhH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ--VLTSAKCSAAKK  163 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~~~~~~a~~~~~  163 (201)
                      .|..+... +..+|+   -...+...|...|   .+++|+.++++++.+++.+...+..++.+|.+  .++..++.....
T Consensus       195 lA~~~~l~-L~~~ad---~l~~lv~~Yek~G---~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~  267 (449)
T 1b89_A          195 LAQMCGLH-IVVHAD---ELEELINYYQDRG---YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW  267 (449)
T ss_dssp             HHHHTTTT-TTTCHH---HHHHHHHHHHHTT---CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             HHHHHHHH-HHhCHh---hHHHHHHHHHHCC---CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            88766664 224443   3445778889999   99999999999999999999999999999886  344444433222


Q ss_pred             HH--HHHHhHHH-----HHHHHHHHHhhhcchHHHHHHHhhc
Q psy12642        164 KE--ISKQMMWV-----SKHLARQYEEQQGNTETLTELMSAL  198 (201)
Q Consensus       164 ~~--~~~~~~~~-----~~~l~~~y~~~~~~~~~~~~~~~~~  198 (201)
                      ..  +..+.+.+     ...+.-.|-+.+..++++.++++.+
T Consensus       268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~  309 (449)
T 1b89_A          268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP  309 (449)
T ss_dssp             TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence            11  12222222     2345666777777888888888764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.19  E-value=2e-10  Score=91.44  Aligned_cols=120  Identities=8%  Similarity=-0.096  Sum_probs=66.3

Q ss_pred             hhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCH---HHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKK-----FMTDQ---ETWQE   73 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~   73 (201)
                      +..+|+|++|+..++++++.        +|.-..++..+|.+|..+|++++|+.++++++..     .|+++   ..+..
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44566666666666666653        1223345555666666666666666666666542     23332   34555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLH-----HPHNHL---LHQRYADILYTQGGLENIELAISHYLMAI  132 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~---~~~~la~~~~~~~~~~~~~~A~~~~~~al  132 (201)
                      +|.+|..+|++++|+..+++++.+     .|+++.   ....++.++..++   .+++|...|.++.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~---~~~~ae~~~~~~~  462 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR---MFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            666666666666666666666542     344433   3345555555555   5666666555553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.19  E-value=1.4e-09  Score=94.42  Aligned_cols=175  Identities=15%  Similarity=0.068  Sum_probs=120.0

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---------------   67 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------   67 (201)
                      +.-++..+...|++++|+..|.++     +++..+..++.++...|++++|++++..+++..++.               
T Consensus      1108 WsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A         1108 WSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence            344667778888888888888664     667777788888888888888888888877655331               


Q ss_pred             ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         68 ------------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        68 ------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                                  ...+..+|..+...|+|++|..+|.++        ..|..+|.++...|   ++++|++.++++    
T Consensus      1183 leele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLg---e~q~AIEaarKA---- 1247 (1630)
T 1xi4_A         1183 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG---EYQAAVDGARKA---- 1247 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhC---CHHHHHHHHHHh----
Confidence                        223556777788888888888888774        57788888888888   888888888877    


Q ss_pred             cccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        136 EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       136 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                       .++.+|..++.++...|++..|...-..  ..........+...|......++++.-.-++|++
T Consensus      1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             -CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence             4567788888888888888777543221  1112222224555566655565565555555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.18  E-value=3.4e-10  Score=75.38  Aligned_cols=95  Identities=15%  Similarity=0.072  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         15 RYEEALEHLETIIKIDETNTAARKRKICILKAKN---KIPEAIKELTEYLKKF-M-TDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      ....+.+.|.+.+..+|.+..+.+.+|.++.+.+   +.++++.+++.+++.+ | +..++++.+|..|++.|+|++|..
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3445556666666666666666666666666665   4456666666666665 4 345666666666666666666666


Q ss_pred             HHHHHhhcCCCCHHHHHHHH
Q psy12642         90 CMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la  109 (201)
                      +++++++.+|+|..+.....
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHH
Confidence            66666666666665544433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.17  E-value=2e-09  Score=88.82  Aligned_cols=162  Identities=11%  Similarity=-0.038  Sum_probs=134.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcC-----------cc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKID-----------ET-----------NTAARKRKICILKAKNKIPEAIKELTEYL   61 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~-----------~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   61 (201)
                      +.|+......|++++|...|++++..-           |.           ...+|...+.+..+.|..+.|...|.+++
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456666778899999999999999752           42           44578888888888999999999999999


Q ss_pred             Hh-cCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc---
Q psy12642         62 KK-FMTDQETWQELCDLYLSEG-DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE---  136 (201)
Q Consensus        62 ~~-~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p---  136 (201)
                      +. .+....+|...+.+....+ +++.|...|+.+++..|+++..+..++......|   +.+.|..+|++++...|   
T Consensus       462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~---~~~~AR~lferal~~~~~~~  538 (679)
T 4e6h_A          462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN---EESQVKSLFESSIDKISDSH  538 (679)
T ss_dssp             HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHTTTSSSTT
T ss_pred             HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcCCHH
Confidence            87 5555778888888777765 4999999999999999999999999999988999   99999999999999988   


Q ss_pred             ccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q psy12642        137 KNIRALYGLALSCHQVLTSAKCSAAKKKEISK  168 (201)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  168 (201)
                      .....|..........|+.+.+..-.++....
T Consensus       539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45677888888888889888776555544433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.17  E-value=5.6e-10  Score=68.80  Aligned_cols=71  Identities=10%  Similarity=0.073  Sum_probs=38.5

Q ss_pred             cCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642         64 FMTDQETWQELCDLYLSEGD---YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      +|+++.++..+|.+++..++   .++|...+++++..+|+++.+++.+|..++..|   +|++|+.+|+++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g---~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF---RFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC
Confidence            35555555555555543333   455555555555555555555555555555555   555555555555555554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.16  E-value=1.2e-09  Score=72.40  Aligned_cols=108  Identities=12%  Similarity=-0.021  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHH
Q psy12642         48 NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT----QGGLENIEL  123 (201)
Q Consensus        48 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~  123 (201)
                      +++++|+.+|+++.+..+..  +.  +|.+|...+.+++|+.+|+++...  .++.+.+.+|.++..    .+   ++++
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~---d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK---DLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC---CHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc---cHHH
Confidence            46899999999999876444  44  999999999999999999999976  789999999999988    66   9999


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHH----hhhhhhhhhhhHHHH
Q psy12642        124 AISHYLMAINLNEKNIRALYGLALSCHQ----VLTSAKCSAAKKKEI  166 (201)
Q Consensus       124 A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~  166 (201)
                      |+.+|+++.+.  .++.+.++|+.+|..    .++.++|..-.++..
T Consensus        80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  124 (138)
T 1klx_A           80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  124 (138)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence            99999999987  678999999999998    788888866555444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.16  E-value=2.8e-09  Score=88.01  Aligned_cols=160  Identities=8%  Similarity=-0.131  Sum_probs=119.9

Q ss_pred             hHHHHHhhhhccCHHHHH-HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------CC----
Q psy12642          3 PIVYIIGCFHFFRYEEAL-EHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-----------MT----   66 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------p~----   66 (201)
                      ++-|+.-+...|+.++|. ..|++++...|.+...|...+.+....|+++.|..+|++++...           |.    
T Consensus       346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~  425 (679)
T 4e6h_A          346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA  425 (679)
T ss_dssp             HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence            344555566677777886 88888888888888888888888888888888888888887642           43    


Q ss_pred             -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642         67 -------DQETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus        67 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                             ...+|...+.+..+.|+.+.|...|.++++. .+..+..+...+.+....++  +++.|...|+.+++..|++
T Consensus       426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~--d~e~Ar~ife~~Lk~~p~~  503 (679)
T 4e6h_A          426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK--DTKTACKVLELGLKYFATD  503 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS--CCHHHHHHHHHHHHHHTTC
T ss_pred             hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHCCCc
Confidence                   2446777778877888888888888888876 44456667666766666541  4788888888888888888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642        139 IRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus       139 ~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      +..|...+......|+.++|+.-.+.
T Consensus       504 ~~~w~~y~~fe~~~~~~~~AR~lfer  529 (679)
T 4e6h_A          504 GEYINKYLDFLIYVNEESQVKSLFES  529 (679)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            88877777777778888777664433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.15  E-value=4.3e-10  Score=69.31  Aligned_cols=74  Identities=12%  Similarity=-0.027  Sum_probs=68.7

Q ss_pred             CcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642         30 DETNTAARKRKICILKAKNK---IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL  103 (201)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  103 (201)
                      +|+++.++..+|.+++..++   .++|...++++++.+|+++.++..+|..++..|+|++|+.++++++..+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            68999999999999987666   799999999999999999999999999999999999999999999999998543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.13  E-value=1.1e-09  Score=72.89  Aligned_cols=100  Identities=15%  Similarity=-0.024  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642         50 IPEAIKELTEYLKKFMTDQETWQELCDLYLSEG---DYAKAVFCMEELFLHH-P-HNHLLHQRYADILYTQGGLENIELA  124 (201)
Q Consensus        50 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~~~~~~~~~A  124 (201)
                      ...+.+.|.+.+..+|.+.++.+.+|.++.+.+   +.++++..++.++..+ | ++..+++.+|..+++.+   +|++|
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~---~Y~~A   90 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK---EYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS---CHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc---CHHHH
Confidence            456677788888888999999999999999988   6779999999999998 7 56889999999999999   99999


Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642        125 ISHYLMAINLNEKNIRALYGLALSCHQV  152 (201)
Q Consensus       125 ~~~~~~al~~~p~~~~~~~~l~~~~~~~  152 (201)
                      +++++++++.+|++..+......+-.+.
T Consensus        91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999877766665554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.10  E-value=5.4e-10  Score=87.09  Aligned_cols=153  Identities=7%  Similarity=-0.064  Sum_probs=121.6

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNT------AARKRKICILKAKNKIPEAIKELTEYLKKFMT------DQETWQE   73 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~   73 (201)
                      .+..|...|++++|++.+.+++...+...      .+...++.++...|+++.|+..+++++...+.      ...++..
T Consensus        61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (434)
T 4b4t_Q           61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK  140 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            45668899999999999999988654322      34556777888889999999999999875432      2678889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc-------HH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLHH------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-------IR  140 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  140 (201)
                      +|.+|...|+|++|+..+++++...      +....++..+|.++...|   ++++|...+++++...+..       ..
T Consensus       141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR---NLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            9999999999999999999998652      233568899999999999   9999999999998765421       24


Q ss_pred             HHHHHHHHHHHhhhhhhhhhh
Q psy12642        141 ALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      .+..++.++...+++.+|...
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~  238 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSY  238 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHH
Confidence            556677777778888887553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.06  E-value=3e-09  Score=66.88  Aligned_cols=76  Identities=21%  Similarity=0.235  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELFLHH-------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      +.-++.+|..++..|+|..|+.+|++++...       +..+.++..+|.+++..|   +++.|+.+++++++++|+++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g---~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG---DLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHH
Confidence            4455667777777777777777777777642       234566777777777777   777777777777777777777


Q ss_pred             HHHHHH
Q psy12642        141 ALYGLA  146 (201)
Q Consensus       141 ~~~~l~  146 (201)
                      +..++.
T Consensus        82 ~~~n~~   87 (104)
T 2v5f_A           82 ANGNLK   87 (104)
T ss_dssp             HHHHHH
T ss_pred             HHhhHH
Confidence            766665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.04  E-value=4.3e-09  Score=77.20  Aligned_cols=107  Identities=17%  Similarity=0.116  Sum_probs=92.9

Q ss_pred             cCcccHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-----CCHHHHHHH
Q psy12642         29 IDETNTAARKRKICILKA---K--N------KIPEAIKELTEYLKKFMT--DQETWQELCDLYLSE-----GDYAKAVFC   90 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~---~--~------~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~-----~~~~~A~~~   90 (201)
                      .+|+++.++++.|.....   .  |      ....|...++++++++|+  +..+|..+|.+|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            457788888888776543   1  3      257899999999999999  677999999999985     999999999


Q ss_pred             HHHHhhcCCCC-HHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHcCCccc
Q psy12642         91 MEELFLHHPHN-HLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus        91 ~~~al~~~~~~-~~~~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      |++++.++|+. ...++.+|..+... +   +++++.++++++++.+|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~g---d~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLN---NRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTT---CHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCC
Confidence            99999999975 99999999999884 8   9999999999999999874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.03  E-value=3.8e-09  Score=84.08  Aligned_cols=120  Identities=14%  Similarity=0.020  Sum_probs=97.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHH---
Q psy12642         40 KICILKAKNKIPEAIKELTEYLKK-----FMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHL---  103 (201)
Q Consensus        40 ~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~---  103 (201)
                      .+..+..+|++++|+..+++++..     .|++   ...+..+|.+|..+|+|++|+.++++++..     .|+++.   
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            344567899999999999999984     4555   456788999999999999999999999964     455554   


Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHcC-----CcccH---HHHHHHHHHHHHhhhhhhhhhhh
Q psy12642        104 LHQRYADILYTQGGLENIELAISHYLMAINL-----NEKNI---RALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      .+.++|.+|...|   ++++|..+|++++++     .|+++   ....+++.++..++.+..|....
T Consensus       395 ~l~nLa~~~~~~G---~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~  458 (490)
T 3n71_A          395 AVMRAGLTNWHAG---HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY  458 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999   999999999999964     45554   45678888888888888874433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.98  E-value=1.2e-08  Score=64.15  Aligned_cols=76  Identities=11%  Similarity=0.080  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKF-------MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ  106 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  106 (201)
                      +.-.+.+|..++..|++..|+.+++++++..       +..+.++..+|.+++++|++++|+..+++++..+|+++.+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4556789999999999999999999999864       234788999999999999999999999999999999998877


Q ss_pred             HHH
Q psy12642        107 RYA  109 (201)
Q Consensus       107 ~la  109 (201)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.83  E-value=4.6e-08  Score=76.71  Aligned_cols=84  Identities=15%  Similarity=0.137  Sum_probs=40.1

Q ss_pred             ccCHHHHHHHHHHHHhc-----CcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKI-----DETNT---AARKRKICILKAKNKIPEAIKELTEYLKK-----FMTDQ---ETWQELCD   76 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~-----~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~   76 (201)
                      .|+|++|+..++++++.     .|+++   .++..+|.+|..+|++++|+.++++++..     .|+++   ..+..+|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            34555555555555542     12222   33444555555555555555555555442     22332   23444555


Q ss_pred             HHHhcCCHHHHHHHHHHHhh
Q psy12642         77 LYLSEGDYAKAVFCMEELFL   96 (201)
Q Consensus        77 ~~~~~~~~~~A~~~~~~al~   96 (201)
                      +|..+|++++|+..|++++.
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            55555555555555555543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.81  E-value=6.3e-07  Score=71.56  Aligned_cols=141  Identities=9%  Similarity=-0.146  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH------------------
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL------------------   77 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------------   77 (201)
                      .++....|++++...|..+.+|...+......|+.+.|...+++++.. |.+...|...+..                  
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~  273 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence            456778999999999999999999999999999999999999999999 9886655544332                  


Q ss_pred             ----------------------HHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         78 ----------------------YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        78 ----------------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                                            ..+.++.+.|...|+++ ...+.....+...+.+.+..++  +.+.|...|+.+++..
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~--d~~~ar~ife~al~~~  350 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG--SRATPYNIFSSGLLKH  350 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHC
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHC
Confidence                                  22466788899999999 4333456677766766665551  5899999999999988


Q ss_pred             cccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        136 EKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       136 p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      |+.+..+...+......|+.++++.
T Consensus       351 ~~~~~~~~~yid~e~~~~~~~~aR~  375 (493)
T 2uy1_A          351 PDSTLLKEEFFLFLLRIGDEENARA  375 (493)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            9888877777777788888877754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.79  E-value=3.8e-08  Score=77.20  Aligned_cols=85  Identities=12%  Similarity=0.083  Sum_probs=46.6

Q ss_pred             HcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHH---HHHHHH
Q psy12642         46 AKNKIPEAIKELTEYLKK-----FMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHL---LHQRYA  109 (201)
Q Consensus        46 ~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~---~~~~la  109 (201)
                      .+|++++|+..+++++..     .|++   ...+..+|.+|..+|+|++|+.++++++..     .|+++.   .+.++|
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            445566666666665542     2333   234455556666666666666666666532     233332   455666


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHc
Q psy12642        110 DILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus       110 ~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      .++...|   ++++|+.+|+++++
T Consensus       379 ~~~~~~g---~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          379 KLQLHQG---MFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HHHHhcC---CHHHHHHHHHHHHH
Confidence            6666666   66666666666654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.78  E-value=5e-07  Score=68.83  Aligned_cols=137  Identities=11%  Similarity=-0.051  Sum_probs=101.8

Q ss_pred             HHhcCcccHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH----HHHHH----HHH
Q psy12642         26 IIKIDETNTAAR--KRKICILKAKNK---IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY----AKAVF----CME   92 (201)
Q Consensus        26 ~l~~~~~~~~~~--~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----~~A~~----~~~   92 (201)
                      +....|.++.+|  +..|.-++..++   ..+|+.+|+++++++|+++.++..++.+|.....+    .....    .+.
T Consensus       186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~  265 (372)
T 3ly7_A          186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID  265 (372)
T ss_dssp             HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence            334456655443  345565665544   58899999999999999999999888777521111    11111    222


Q ss_pred             --HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642         93 --ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus        93 --~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                        .++..+|.++.++..++..+...|   ++++|+..+++++.++|+ ..++..++.++...|+.++|.....+..
T Consensus       266 a~~a~~~~~~~a~~~~alal~~l~~g---d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          266 NIVTLPELNNLSIIYQIKAVSALVKG---KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             HHHTCGGGTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhcccCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              233567999999999999998899   999999999999999976 6788899999999999999977665544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.78  E-value=1.2e-07  Score=60.89  Aligned_cols=94  Identities=14%  Similarity=0.045  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642         16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPE---AIKELTEYLKKF-M-TDQETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      ...+...|...+..++.+..+.+.+|+++.+.++...   ++.+++..++.. | ..-+..+.+|..+++.|+|++|..+
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3445555555555555566666666666666655544   666666665554 3 2345566666666666666666666


Q ss_pred             HHHHhhcCCCCHHHHHHHH
Q psy12642         91 MEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        91 ~~~al~~~~~~~~~~~~la  109 (201)
                      ++.+++..|+|..+.....
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHH
Confidence            6666666666665544433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.77  E-value=4.5e-08  Score=71.88  Aligned_cols=89  Identities=10%  Similarity=-0.010  Sum_probs=81.2

Q ss_pred             hccCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-cC
Q psy12642         12 HFFRYEEALEHLETIIKIDET--NTAARKRKICILKAK-----NKIPEAIKELTEYLKKFMTD-QETWQELCDLYLS-EG   82 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~~   82 (201)
                      ..+...+|...++++++.+|+  +..+|..+|.+|...     |+.++|..+|+++++++|+. ...++..|..+.. +|
T Consensus       175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence            345678899999999999999  677999999999995     99999999999999999975 9999999999988 49


Q ss_pred             CHHHHHHHHHHHhhcCCC
Q psy12642         83 DYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~  100 (201)
                      +++++..++++++..+|.
T Consensus       255 d~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGG
T ss_pred             CHHHHHHHHHHHHcCCCC
Confidence            999999999999998876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.70  E-value=2.9e-07  Score=72.16  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=74.5

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcC-----ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCH---HH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKID-----ETN---TAARKRKICILKAKNKIPEAIKELTEYLKK-----FMTDQ---ET   70 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~   70 (201)
                      +..+..+|+|++|+..++++++..     |++   ..++..+|.+|..+|++++|+.++++++..     .|+++   ..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344667888999999999888752     444   466777888888899999999999888863     34544   45


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHHH
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHLL  104 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~  104 (201)
                      ++.+|.+|..+|++++|+..+++++.+     .|+++.+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~  412 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI  412 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence            777889999999999999999988864     4666554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.67  E-value=1e-05  Score=64.69  Aligned_cols=153  Identities=8%  Similarity=-0.013  Sum_probs=122.3

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhc-CCCHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKID-ETNTAARKRKICILKAKN---------KIPEAIKELTEYLKKF-MTDQETWQEL   74 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~~~~~~-p~~~~~~~~l   74 (201)
                      .+..|.+.|+.++|++.|+.+.+.. +-+..++..+..++...+         ..+.|...|++..... +.|...|..+
T Consensus        32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l  111 (501)
T 4g26_A           32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG  111 (501)
T ss_dssp             HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            3567889999999999999998864 224556666666665444         3688999999877643 3467788999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC--cccHHHHHHHHHHHHH
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLHH-PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN--EKNIRALYGLALSCHQ  151 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~  151 (201)
                      ...|.+.|++++|...|++..... +.+...+..+-..+...|   +.++|.+.|....+..  |+ ...+..+..+|.+
T Consensus       112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g---~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~  187 (501)
T 4g26_A          112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG---DADKAYEVDAHMVESEVVPE-EPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhh
Confidence            999999999999999999988652 335778888888999999   9999999999987654  44 7789999999999


Q ss_pred             hhhhhhhhhhh
Q psy12642        152 VLTSAKCSAAK  162 (201)
Q Consensus       152 ~~~~~~a~~~~  162 (201)
                      .|+.++|..-.
T Consensus       188 ~g~~d~A~~ll  198 (501)
T 4g26_A          188 TKNADKVYKTL  198 (501)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999996533

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.64  E-value=7.1e-08  Score=75.66  Aligned_cols=93  Identities=9%  Similarity=-0.030  Sum_probs=77.7

Q ss_pred             HcCCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHH---HHHHHH
Q psy12642         46 AKNKIPEAIKELTEYLKK-----FMTDQ---ETWQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHL---LHQRYA  109 (201)
Q Consensus        46 ~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~---~~~~la  109 (201)
                      ..|++++|+..+++++..     .|+++   ..+..+|.+|..+|+|++|+.++++++..     .|+++.   .+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468899999999999884     46664   56778999999999999999999999964     455554   688999


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHcC-----CcccHHH
Q psy12642        110 DILYTQGGLENIELAISHYLMAINL-----NEKNIRA  141 (201)
Q Consensus       110 ~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~  141 (201)
                      .+|...|   ++++|+.+|++++++     .|+++..
T Consensus       390 ~~~~~qg---~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLE---NKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhcc---CHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999   999999999999874     4666543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.63  E-value=1e-06  Score=56.57  Aligned_cols=100  Identities=13%  Similarity=-0.063  Sum_probs=83.9

Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhcC-C-CCHHHHHHHHHHHHHcCCcccHHH
Q psy12642         49 KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK---AVFCMEELFLHH-P-HNHLLHQRYADILYTQGGLENIEL  123 (201)
Q Consensus        49 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~~~~~~~~~  123 (201)
                      ....+...|.+....++.+..+.+.+|.++.+..+...   ++..++..+..+ | ..-..++.+|..+++.|   +|++
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg---~Y~~   92 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK---EYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh---hHHH
Confidence            34566677777777788899999999999999887766   999999999876 4 45678999999999999   9999


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642        124 AISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus       124 A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      |+++++..++..|++..+......+-.+
T Consensus        93 A~~~~~~lL~~eP~n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKELERLIDKA  120 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999887655555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.61  E-value=5.3e-06  Score=66.25  Aligned_cols=153  Identities=14%  Similarity=0.011  Sum_probs=116.8

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHH---------------------------------------
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICI---------------------------------------   43 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~---------------------------------------   43 (201)
                      ++-|+.-+...|+.++|...|++++.. |.+...+...+..                                       
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~  294 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN  294 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence            455666677889999999999999999 8876555443332                                       


Q ss_pred             -HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccH
Q psy12642         44 -LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG-DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI  121 (201)
Q Consensus        44 -~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~  121 (201)
                       ....+..+.|...|.++ ...+....+|...+.+....+ +.+.|...|+.+++..|+++..+..++......|   +.
T Consensus       295 ~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~---~~  370 (493)
T 2uy1_A          295 YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG---DE  370 (493)
T ss_dssp             HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CH
T ss_pred             HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CH
Confidence             22356688899999998 433345677877777777666 6999999999999999999998888888888899   99


Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642        122 ELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus       122 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      +.|...|+++    +.....|......-...|+.+.+..-..+
T Consensus       371 ~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~  409 (493)
T 2uy1_A          371 ENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQ  409 (493)
T ss_dssp             HHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999998    34566777777777777877666443333

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.46  E-value=3.6e-06  Score=56.47  Aligned_cols=132  Identities=9%  Similarity=-0.074  Sum_probs=67.1

Q ss_pred             chHHHHHhhhhccCHHHHHHHHHHHHhcCcccH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCHH
Q psy12642          2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNT---------AARKRKICILKAKNKIPEAIKELTEYLKKF---MTDQE   69 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~   69 (201)
                      +.+-.+..+++.|.|+.|+-..+.++....+++         .++..+|..++..++|..|...|+++++..   +..+.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            344455566666777777766666555432222         355666667777777777777777665421   21211


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC  149 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  149 (201)
                      ....++    ....++..       .. .+.+.++.+.++.|+...+   ++++|+..++.. ......++....||..|
T Consensus       102 ~~~~~~----~~ss~p~s-------~~-~~~e~Elkykia~C~~~l~---~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          102 VRPSTG----NSASTPQS-------QC-LPSEIEVKYKLAECYTVLK---QDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             --------------------------C-CCCHHHHHHHHHHHHHHTT---CHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             cccccc----ccCCCccc-------cc-ccchHHHHHHHHHHHHHHC---CHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            100000    00000000       00 1223466777788888888   788888777753 22233455666666655

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.39  E-value=1.3e-05  Score=52.78  Aligned_cols=120  Identities=12%  Similarity=0.094  Sum_probs=95.0

Q ss_pred             cCcccHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642         29 IDETNTAARKRKICILKAKNKI------PEAIKELTEYLKKFMTD--------QETWQELCDLYLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~~~~------~~A~~~~~~~~~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a   94 (201)
                      ..|++++.|.......-..|+.      +.-++.|++++..-|..        ...|...+.. ...++.++|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            5688999998888888888998      88889999999877754        3355556644 5668999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642         95 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus        95 l~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      +.+....+.+|...|....+.|   +...|.+.+.+++.+.|..... ...+..-.+.|
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqg---nl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~  141 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQG---NVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQ  141 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTT
T ss_pred             HHHhHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcC
Confidence            9888888999999999999999   9999999999999999985543 33444333444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.30  E-value=2.5e-05  Score=50.38  Aligned_cols=79  Identities=19%  Similarity=0.147  Sum_probs=57.8

Q ss_pred             cHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642         33 NTAARKRKICILKAKNKI---PEAIKELTEYLKKFMT-DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY  108 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  108 (201)
                      ++.+.+.+|.++.+..+.   ..++.+++..++..|. .-+.++.+|..+++.|+|++|..+.+.++...|+|..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            567777788777776554   4577777777777774 367777788888888888888888888888888887766555


Q ss_pred             HHH
Q psy12642        109 ADI  111 (201)
Q Consensus       109 a~~  111 (201)
                      ..+
T Consensus       119 ~~I  121 (134)
T 3o48_A          119 SMV  121 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.25  E-value=9.5e-05  Score=48.30  Aligned_cols=80  Identities=19%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             cccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642         31 ETNTAARKRKICILKAKNKI---PEAIKELTEYLKKFMT-DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ  106 (201)
Q Consensus        31 ~~~~~~~~~~a~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  106 (201)
                      +-++.+.+.+++++....+.   .+++.+++..++..|. .-+..+.+|..+++.|+|++|..+.+.+++..|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            44567777777777776654   4577777777777774 3567777777788888888888888888888887776655


Q ss_pred             HHHH
Q psy12642        107 RYAD  110 (201)
Q Consensus       107 ~la~  110 (201)
                      ....
T Consensus       116 Lk~~  119 (144)
T 1y8m_A          116 LKSM  119 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.25  E-value=1.8e-05  Score=53.09  Aligned_cols=114  Identities=11%  Similarity=0.017  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---------ETWQELCDLYLSEGDYAKAVFCMEELFLHH---PHNH  102 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~  102 (201)
                      ++++.-...+...|.|+.|+-....++....+++         .+...+|++++.+++|..|...|+++++..   +.++
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4555667778889999999998888766543322         367889999999999999999999998653   2332


Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642        103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus       103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      .....++.    ..   ....       ...+ +.+.+..+.++.||..+++...|.....
T Consensus       101 s~~~~~~~----~s---s~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          101 KVRPSTGN----SA---STPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             Cccccccc----cC---CCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence            22111211    11   1111       1223 4567888999999999999999977554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.16  E-value=3.2e-05  Score=50.95  Aligned_cols=103  Identities=9%  Similarity=-0.042  Sum_probs=86.1

Q ss_pred             chHHHHHhhhhccCH------HHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642          2 APIVYIIGCFHFFRY------EEALEHLETIIKIDETN--------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD   67 (201)
Q Consensus         2 ~~~~~~~~~~~~~~~------~~A~~~~~~~l~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~   67 (201)
                      .+..|+..+.+.|+.      ++-++.|++++..-|-.        ...|...+.. ...++.+.|...|+.+++.....
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF   93 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF   93 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH
Confidence            356677778888999      89999999999876542        3555556644 56699999999999999988888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH  105 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  105 (201)
                      +.+|...|+.-.++|+..+|.+.+.+++.+.|.....+
T Consensus        94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            99999999999999999999999999999999865543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.10  E-value=0.00023  Score=56.95  Aligned_cols=134  Identities=8%  Similarity=-0.066  Sum_probs=106.7

Q ss_pred             ccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      .+..++|.+.|+...... +-+..++..+...+...|++++|..++++..+.. +.+...|..+-..|.+.|+.++|...
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            345789999999988764 2356788889999999999999999999988753 34678888899999999999999999


Q ss_pred             HHHHhhcC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc--CCcccHHHHHHHHHHHH
Q psy12642         91 MEELFLHH-PHNHLLHQRYADILYTQGGLENIELAISHYLMAIN--LNEKNIRALYGLALSCH  150 (201)
Q Consensus        91 ~~~al~~~-~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~  150 (201)
                      |++..... ..+...+..+-..+...|   +.++|.+.+++.-+  ..|+ ...+..+...+.
T Consensus       163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g---~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~  221 (501)
T 4g26_A          163 DAHMVESEVVPEEPELAALLKVSMDTK---NADKVYKTLQRLRDLVRQVS-KSTFDMIEEWFK  221 (501)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHh
Confidence            99988653 235778888999999999   99999999998764  4455 344444444444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.04  E-value=0.00019  Score=46.30  Aligned_cols=85  Identities=7%  Similarity=-0.049  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642         66 TDQETWQELCDLYLSEGDY---AKAVFCMEELFLHHPH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA  141 (201)
Q Consensus        66 ~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  141 (201)
                      -++.+.+.+|.++.+..+.   .+++..++..+..+|. .-..++.+|..+++.|   +|++|+++.+..++..|++..+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg---dY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG---EYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCCHHH
Confidence            3578888898888877654   5799999999998884 4678999999999999   9999999999999999999988


Q ss_pred             HHHHHHHHHHhh
Q psy12642        142 LYGLALSCHQVL  153 (201)
Q Consensus       142 ~~~l~~~~~~~~  153 (201)
                      ......+-.++.
T Consensus       115 ~~Lk~~Ie~ki~  126 (134)
T 3o48_A          115 GALKSMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            766655555443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.00  E-value=0.00071  Score=44.18  Aligned_cols=84  Identities=7%  Similarity=-0.058  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         65 MTDQETWQELCDLYLSEGDY---AKAVFCMEELFLHHPH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        65 p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      +.++.+.+.++.++.+..+.   .+++..++..+...|. .-..++.+|..+++.+   +|++|.++.+..++..|++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~---~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG---EYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh---hHHHHHHHHHHHHhcCCCcHH
Confidence            45688899999998887764   5799999999998884 5668999999999999   999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q psy12642        141 ALYGLALSCHQ  151 (201)
Q Consensus       141 ~~~~l~~~~~~  151 (201)
                      +......+-.+
T Consensus       113 A~~Lk~~Ie~~  123 (144)
T 1y8m_A          113 VGALKSMVEDK  123 (144)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            76655555444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.0012  Score=55.06  Aligned_cols=115  Identities=16%  Similarity=0.039  Sum_probs=85.5

Q ss_pred             ccC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------cCCC----------HHH
Q psy12642         13 FFR-YEEALEHLETIIKIDETNTAARKRKICILK--AK-NKIPEAIKELTEYLKK--------FMTD----------QET   70 (201)
Q Consensus        13 ~~~-~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~--~~-~~~~~A~~~~~~~~~~--------~p~~----------~~~   70 (201)
                      .++ ++.|+..+++....+|.....+ ..+.+..  .. .+--+|+..+.+.++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            344 5889999999999999765333 2233222  12 3345677777777642        2222          234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA  131 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  131 (201)
                      +..-+..+...|+++-|+.+.++++...|.....|+.++.+|..++   +++.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~---d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKE---EYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc---cHHHHHHHHhcC
Confidence            4455778889999999999999999999999999999999999999   999999887765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.47  E-value=0.01  Score=40.13  Aligned_cols=126  Identities=17%  Similarity=0.155  Sum_probs=91.2

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +.-|...++-.+|+.++-.- ..+  -|..+.....++..+.-.|.+..++-++..     -+.....+.-+.||.+.++
T Consensus         6 ~~kI~Ks~kY~dYdt~~fLs-a~L--~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKd   77 (242)
T 3kae_A            6 IGKICKSIRYRDYETAIFLA-ACL--LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKD   77 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-HHH--C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhcccccHHHHHH-HHH--ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHH
Confidence            45667778888998887443 332  344445566777788889999988876542     3445666667889999999


Q ss_pred             HHHHHHHHHHHhh--c---------------CCCCHH-HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         84 YAKAVFCMEELFL--H---------------HPHNHL-LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        84 ~~~A~~~~~~al~--~---------------~~~~~~-~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      |.+|+.+++..+.  .               +|.+.. .+..+|.++...|   +.++|+.+|...+..+|-.+.
T Consensus        78 YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g---~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A           78 YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSG---YREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhc---CHHHhhhHhhhhcCCccccch
Confidence            9999999999982  2               234443 4567899999999   999999999999988875443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00082  Score=56.06  Aligned_cols=111  Identities=16%  Similarity=0.114  Sum_probs=81.6

Q ss_pred             HcCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHhh--------cCCCCH----------H
Q psy12642         46 AKNK-IPEAIKELTEYLKKFMTDQETWQELCDLYL---SEGDYAKAVFCMEELFL--------HHPHNH----------L  103 (201)
Q Consensus        46 ~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~--------~~~~~~----------~  103 (201)
                      ..++ ++.|+..+++....+|.....+. .+.+..   ...+--+|+..+.+.++        ..+.+.          .
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            3455 58899999999999887644332 222211   22345667777777763        223332          2


Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        104 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      .+..-+..+...+   +++-|+.+.++++...|.+...|+.|+.||..+|+++.|.-
T Consensus       339 LL~~Qa~FLl~K~---~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL  392 (754)
T 4gns_B          339 LLNIQTNFLLNRG---DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF  392 (754)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhccC---cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence            4455577777888   99999999999999999999999999999999999999954

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.05  E-value=0.0081  Score=47.86  Aligned_cols=81  Identities=16%  Similarity=0.036  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC  149 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  149 (201)
                      ....+|.+....+.+..|..+|.+|+.+.|++...+..+|.+....+   +.-+|+-+|.+++......+.+..++...+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~---~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG---DHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT---CHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc---ccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            44567888888888999999999999999999999999999998888   888899999999988777788888888888


Q ss_pred             HHhh
Q psy12642        150 HQVL  153 (201)
Q Consensus       150 ~~~~  153 (201)
                      .+.-
T Consensus       231 ~~~~  234 (497)
T 1ya0_A          231 SKAL  234 (497)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            7643

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.00  E-value=0.0099  Score=47.38  Aligned_cols=79  Identities=13%  Similarity=0.032  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY  113 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  113 (201)
                      .++..+|.+......+..|..+|.++....|++...+..+|.+....|+.-+|+.+|-+++......+.+..++...+.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            4566788998889999999999999999999999999999999999999999999999999776666776666665554

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.0039  Score=49.57  Aligned_cols=148  Identities=12%  Similarity=0.000  Sum_probs=68.8

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHh-----------cCcccHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHh
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIK-----------IDETNTAARKRKICILKAKNKIPEA----------IKELTEYLKK   63 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~-----------~~~~~~~~~~~~a~~~~~~~~~~~A----------~~~~~~~~~~   63 (201)
                      +..+.+++.+++++|.++-...+.           .++-...+|+..+.++-..|+....          ...+-.+++.
T Consensus       141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt  220 (523)
T 4b4t_S          141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI  220 (523)
T ss_dssp             --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence            344567889999999988776651           1233446666666666666665442          2233333332


Q ss_pred             -----cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         64 -----FMTD-QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN-------HLLHQRYADILYTQGGLENIELAISHYLM  130 (201)
Q Consensus        64 -----~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~~~~A~~~~~~  130 (201)
                           ++.. ..++..+-..|...+.|+.|.....++.  .|.+       ...++.+|.++...+   +|.+|.+++..
T Consensus       221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~---~Y~eA~~~L~~  295 (523)
T 4b4t_S          221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQL---DYSTANEYIIA  295 (523)
T ss_dssp             CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHH
Confidence                 2222 5577778899999999999999999986  3422       346788899999999   99999999999


Q ss_pred             HHcCCcccH-------HHHHHHHHHHHHhhhhhh
Q psy12642        131 AINLNEKNI-------RALYGLALSCHQVLTSAK  157 (201)
Q Consensus       131 al~~~p~~~-------~~~~~l~~~~~~~~~~~~  157 (201)
                      |+...|.+.       .++..+..|-.-+|+...
T Consensus       296 A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~  329 (523)
T 4b4t_S          296 AIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE  329 (523)
T ss_dssp             HTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence            999887532       233344455455676543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.91  E-value=0.068  Score=38.84  Aligned_cols=120  Identities=17%  Similarity=0.090  Sum_probs=84.0

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A   87 (201)
                      ..+++.|+.++|++.....++.+|.+......+..+++-.|+++.|...++.+.+++|.....-..+..+       =.|
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~a   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKA   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHH
Confidence            3567889999999999999999999999999999999999999999999999999999875432221111       011


Q ss_pred             HHHHHHHhh--c------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642         88 VFCMEELFL--H------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK  137 (201)
Q Consensus        88 ~~~~~~al~--~------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  137 (201)
                      ...=.+.+.  .      .|..+.....-+......|   +.++|...-.++++..|.
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G---~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ---DYEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHhcCcc
Confidence            111122221  1      1222223344455556678   899999999999887664

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.89  E-value=0.02  Score=44.18  Aligned_cols=61  Identities=15%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      +...++..+...|++.+++..+..++..+|.+..++..+-.++...|   +..+|++.|+++-+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~G---r~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSD---RQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence            44556777778888888888888888888888888888888888888   88888877777543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.88  E-value=0.059  Score=45.06  Aligned_cols=102  Identities=17%  Similarity=0.109  Sum_probs=64.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHH
Q psy12642         43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFL--------HHPHNHLLHQRYADILYT  114 (201)
Q Consensus        43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~  114 (201)
                      .....|+++.|.+..+     ..+++..|..+|..+...++++.|..+|.++-.        ....+...+..++.....
T Consensus       661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455677776666543     346788999999999999999999999987521        123445555566666666


Q ss_pred             cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642        115 QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      .|   ++..|...|.+.     ++   ......+|...+++++|..
T Consensus       736 ~~---~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~  770 (814)
T 3mkq_A          736 TG---KFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAF  770 (814)
T ss_dssp             TT---CHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHH
T ss_pred             cC---chHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHH
Confidence            66   666666665542     11   1234455666676666644

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.81  E-value=0.043  Score=42.29  Aligned_cols=61  Identities=10%  Similarity=-0.060  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy12642        104 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS  167 (201)
Q Consensus       104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  167 (201)
                      +...++..+...|   ++.+++..+..++..+|-+...+..+..++...|+..+|.........
T Consensus       173 a~~~~~~~~l~~g---~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACG---RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455666777777   888888888888888887777888888888888888777665554443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.06  Score=36.61  Aligned_cols=42  Identities=14%  Similarity=0.117  Sum_probs=21.3

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTE   59 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   59 (201)
                      .|+++.|.+..+..     ++...|..+|......|+++-|..+|.+
T Consensus        18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            45555555544432     3344555555555555555555555544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.57  E-value=0.053  Score=46.89  Aligned_cols=94  Identities=9%  Similarity=-0.021  Sum_probs=74.7

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKI----DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLY   78 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~   78 (201)
                      -.++.+|.+.|+.++|...|+...+.    -.-+...|..+...++..|+.++|.+.|++..... ..|...|..+-.++
T Consensus       131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~gl  210 (1134)
T 3spa_A          131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM  210 (1134)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            35678899999999999999775432    23357788889999999999999999999987743 34677788888888


Q ss_pred             HhcCC-HHHHHHHHHHHhhc
Q psy12642         79 LSEGD-YAKAVFCMEELFLH   97 (201)
Q Consensus        79 ~~~~~-~~~A~~~~~~al~~   97 (201)
                      .+.|+ .++|...|++....
T Consensus       211 cK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          211 GRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHTCCHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHc
Confidence            88887 47888999888764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.57  E-value=0.089  Score=35.61  Aligned_cols=94  Identities=21%  Similarity=0.099  Sum_probs=75.0

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h---------------cCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK--K---------------FMT   66 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~---------------~p~   66 (201)
                      +++.+.++-.|.|.+++-.+..     -+.....+..+.||...+++..|+..++..+.  .               +|.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~  111 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG  111 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred             hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence            4566778889999999987654     35567777789999999999999999999983  1               344


Q ss_pred             CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH
Q psy12642         67 DQE-TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH  102 (201)
Q Consensus        67 ~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  102 (201)
                      +.+ .+..+|.++...|+-++|+.++......+|--+
T Consensus       112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~  148 (242)
T 3kae_A          112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS  148 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence            544 455679999999999999999999988877543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.23  Score=39.03  Aligned_cols=97  Identities=18%  Similarity=0.138  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCCHH--
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKF--MTD----QETWQELCDLYLSEGDYAKAVFCMEELFL---HHPHNHL--  103 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~--  103 (201)
                      .....++.++...|++.+|...+.......  ..+    .+++.....+|...+++.+|...++++..   ..+.++.  
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk  217 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK  217 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence            455678999999999999999999876532  112    45777788999999999999999998742   2344443  


Q ss_pred             --HHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642        104 --LHQRYADILYTQGGLENIELAISHYLMAINL  134 (201)
Q Consensus       104 --~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  134 (201)
                        .+...|.++...+   +|.+|..+|..++..
T Consensus       218 ~~~~~~~~~~~~~e~---~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          218 LEYYNLLVKISLHKR---EYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh---hHHHHHHHHHHHHhc
Confidence              5677788888889   999999999998864

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.32  E-value=0.25  Score=38.10  Aligned_cols=113  Identities=15%  Similarity=0.040  Sum_probs=81.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCHH----HH
Q psy12642         39 RKICILKAKNKIPEAIKELTEYLKKFM--TD----QETWQELCDLYLSEGDYAKAVFCMEELFLHH---PHNHL----LH  105 (201)
Q Consensus        39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~----~~  105 (201)
                      .+|.+|+..|++.+|.+.+.+..+.-.  ++    .+++..-...|...+++.++...+.++....   +.+|.    ..
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            789999999999999999988877322  22    4556667788999999999999998887542   13333    44


Q ss_pred             HHHHHHHH-HcCCcccHHHHHHHHHHHHcCC-----cccHHHHHHHHHHHHHhhh
Q psy12642        106 QRYADILY-TQGGLENIELAISHYLMAINLN-----EKNIRALYGLALSCHQVLT  154 (201)
Q Consensus       106 ~~la~~~~-~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~  154 (201)
                      ..-|..+. ..+   +|..|...|-.+++..     |....+...++.|-...++
T Consensus       184 ~~~Gi~~l~~~r---dyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          184 LQSGILHAADER---DFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHHHHHHTTS---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhHHHHHhcc---CHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence            55677777 788   9999999999987433     2223455566666666554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.041  Score=43.06  Aligned_cols=99  Identities=12%  Similarity=-0.046  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCHH----H
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLH--HPHNHL----L  104 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~----~  104 (201)
                      ..++..+|..|...|+++.|.+.+.++.......   .+++.....++...+++..+...++++...  ...++.    .
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            3577889999999999999999999988754333   678888888999999999999999998654  223332    3


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642        105 HQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus       105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      ....|.++...+   +|.+|...|..++...
T Consensus       211 k~~~gl~~l~~r---~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          211 KTYYGIHCLAVR---NFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHGGGGTS---CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhC---hHHHHHHHHHHHhccC
Confidence            455677777788   9999999999887644

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.26  E-value=0.28  Score=37.91  Aligned_cols=110  Identities=16%  Similarity=0.021  Sum_probs=78.8

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCHH----HHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDE------TNTAARKRKICILKAKNKIPEAIKELTEYLKKF---MTDQE----TWQE   73 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~----~~~~   73 (201)
                      +.-|+..|+|.+|...+.++++.-.      .-..++.....+|...+++.++...+.++....   +.+|.    ....
T Consensus       106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~  185 (394)
T 3txn_A          106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQ  185 (394)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence            4457889999999999999887421      223667777889999999999999998887643   23443    3444


Q ss_pred             HHHHHH-hcCCHHHHHHHHHHHhhcCC--CCH---HHHHHHHHHHHHcC
Q psy12642         74 LCDLYL-SEGDYAKAVFCMEELFLHHP--HNH---LLHQRYADILYTQG  116 (201)
Q Consensus        74 l~~~~~-~~~~~~~A~~~~~~al~~~~--~~~---~~~~~la~~~~~~~  116 (201)
                      -|..++ ..++|.+|...|-+++....  .++   .+...++.+....+
T Consensus       186 ~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~  234 (394)
T 3txn_A          186 SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLG  234 (394)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcC
Confidence            688899 89999999999998875432  222   23444555555555

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.16  E-value=0.042  Score=39.93  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=52.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHH
Q psy12642         43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL  104 (201)
Q Consensus        43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  104 (201)
                      -.+..|+.++++..+...++..|.|...-..+.++++-.|+|++|..-++.+.+++|.....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            34567888999999999999999998888888888899999999999999999999885443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.15  E-value=0.19  Score=43.61  Aligned_cols=97  Identities=7%  Similarity=-0.060  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLK----KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHH-PHNHLLHQRYA  109 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la  109 (201)
                      ..+..+...+++.|+.++|...+....+    ....|...|..+-..|.+.|++++|...|++..... ..|...+..+-
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            5677888899999999999999976543    234578889999999999999999999999987643 23477777777


Q ss_pred             HHHHHcCCccc-HHHHHHHHHHHHcC
Q psy12642        110 DILYTQGGLEN-IELAISHYLMAINL  134 (201)
Q Consensus       110 ~~~~~~~~~~~-~~~A~~~~~~al~~  134 (201)
                      .++.+.|   + .++|.+.|++....
T Consensus       208 ~glcK~G---~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          208 QCMGRQD---QDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHT---CCHHHHHHHHHHHHHH
T ss_pred             HHHHhCC---CcHHHHHHHHHHHHHc
Confidence            7888888   6 47788888887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.15  E-value=0.26  Score=41.17  Aligned_cols=76  Identities=14%  Similarity=0.029  Sum_probs=51.1

Q ss_pred             hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hcCCCHHHHHHHHHHHHhcCC
Q psy12642         12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK--------KFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      ..|++++|.+..+     ..+++..|..+|..+...++++.|+.+|.++-.        ....+.+.+..++......|+
T Consensus       664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~  738 (814)
T 3mkq_A          664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK  738 (814)
T ss_dssp             HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence            4566666666542     345678999999999999999999999987522        224444555555555556666


Q ss_pred             HHHHHHHHH
Q psy12642         84 YAKAVFCME   92 (201)
Q Consensus        84 ~~~A~~~~~   92 (201)
                      +..|...|.
T Consensus       739 ~~~A~~~~~  747 (814)
T 3mkq_A          739 FNLAFNAYW  747 (814)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            655555543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.37  E-value=0.18  Score=39.43  Aligned_cols=96  Identities=8%  Similarity=-0.135  Sum_probs=74.5

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCH----HHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKID---ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TDQ----ETWQEL   74 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~----~~~~~l   74 (201)
                      .-.+.-+++.|++++|.+.|.++....   ..-...+.....++...+++..+...+.++.....  .++    ......
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~  214 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY  214 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence            345666889999999999999988754   23457788888999999999999999999876432  232    234445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642         75 CDLYLSEGDYAKAVFCMEELFLHHP   99 (201)
Q Consensus        75 ~~~~~~~~~~~~A~~~~~~al~~~~   99 (201)
                      |..+...++|.+|...|-.++....
T Consensus       215 gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          215 GIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhChHHHHHHHHHHHhccCC
Confidence            7788899999999999988876543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.97  E-value=0.76  Score=37.74  Aligned_cols=124  Identities=13%  Similarity=0.054  Sum_probs=79.4

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccH-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNT-AA---RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE   81 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~---~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~   81 (201)
                      +++.-....+.+.|...+.......+-+. ..   +..++.-....+...++...+.+..... .+......++...++.
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~  298 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGT  298 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHHC
Confidence            34444455688889888887754333222 22   2222222223343556677777655443 3333333344445677


Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642         82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        82 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      |+++.|..+|+..-...+......+-+|.++...|   +.++|...|.++..
T Consensus       299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g---~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG---REAEAKEILHQLMQ  347 (618)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcC---CHHHHHHHHHHHhc
Confidence            99999999998766544456777888899989999   99999999999876

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.63  E-value=1.1  Score=39.58  Aligned_cols=115  Identities=12%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------c---C
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------------------F---M   65 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------~---p   65 (201)
                      .+...+.++-+.++    +...|.++...+.+|.++...|++++|..+|.++-..                    .   .
T Consensus       821 ~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~  896 (1139)
T 4fhn_B          821 KLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN  896 (1139)
T ss_dssp             HHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred             HHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence            35555666544432    2334556666677888888888888888888764210                    0   0


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCHH----HHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP-HNHL----LHQRYADILYTQGGLENIELAISHYLM  130 (201)
Q Consensus        66 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~----~~~~la~~~~~~~~~~~~~~A~~~~~~  130 (201)
                      .-+..|..+..++...|.++.+++..+.++...+ ++..    .|..+=..+...+   +|++|...+..
T Consensus       897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~---~ye~Ay~aL~~  963 (1139)
T 4fhn_B          897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG---KFDAAHVALMV  963 (1139)
T ss_dssp             SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC---CSGGGGHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC---CHHHHHHHHHh
Confidence            1123455566677777888888888887776543 3332    4555556666777   77777666643

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.61  E-value=1  Score=39.76  Aligned_cols=114  Identities=12%  Similarity=0.011  Sum_probs=82.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---------------------
Q psy12642         40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHH---------------------   98 (201)
Q Consensus        40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------------   98 (201)
                      +...+...+.++-+.+    .....|.++..-+.+|.++...|++++|..+|+++-.--                     
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            4445556677765543    445668888888999999999999999999998874211                     


Q ss_pred             --CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc-ccH----HHHHHHHHHHHHhhhhhhhhh
Q psy12642         99 --PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-KNI----RALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        99 --~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~----~~~~~l~~~~~~~~~~~~a~~  160 (201)
                        ..-+..+..+..++...+   .++.+++.-+.|++..+ ++.    ..|..+-..+..+|++++|-.
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~---~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~  959 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEES---AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV  959 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTS---CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred             ccccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence              111235566667777778   89999999999997553 222    256778888889999999944

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.36  E-value=0.94  Score=35.55  Aligned_cols=92  Identities=14%  Similarity=0.076  Sum_probs=71.5

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCCH----HHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLK---KFMTDQ----ETWQ   72 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~----~~~~   72 (201)
                      ++.-+...|++.+|...+..+...-      ..-..++.....++...+++..|...+.++..   ..+..+    ..+.
T Consensus       143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~  222 (445)
T 4b4t_P          143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN  222 (445)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence            3455788999999999999986532      12246777888999999999999999988643   234443    3556


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLH   97 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~   97 (201)
                      ..|.++...++|.+|..+|..++..
T Consensus       223 ~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          223 LLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            6789999999999999999998864

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.32  E-value=0.37  Score=38.49  Aligned_cols=66  Identities=12%  Similarity=0.091  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN  101 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  101 (201)
                      ..++..+-..|...+.+++|..+..+..  +|.+       ...++.+|.++.-+++|.+|..++..++...|.+
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            4677788889999999999999999874  5543       3456778999999999999999999999988754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.66  E-value=1.6  Score=29.61  Aligned_cols=48  Identities=19%  Similarity=0.282  Sum_probs=42.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642         42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   94 (201)
                      .+....|+++.|.++.+..     ++...|..+|...+..|+++-|..+|.++
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            3466899999999987764     67889999999999999999999999875

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=90.87  E-value=2.4  Score=29.35  Aligned_cols=69  Identities=12%  Similarity=-0.011  Sum_probs=46.1

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642         31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKK--FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  100 (201)
                      |....+|...+..+ ..+...++..+|.-....  .-..+..|...|..+...|++.+|..+|+.++.....
T Consensus        77 ~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~  147 (202)
T 3esl_A           77 PRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR  147 (202)
T ss_dssp             HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence            44456666666644 234355677777666553  3445777777888888888888888888888876654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=89.28  E-value=2.8  Score=27.35  Aligned_cols=120  Identities=11%  Similarity=0.006  Sum_probs=79.9

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccH------------------HHHHHHHHHH--HHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNT------------------AARKRKICIL--KAKNKIPEAIKELTEYLKKFMTDQ   68 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~------------------~~~~~~a~~~--~~~~~~~~A~~~~~~~~~~~p~~~   68 (201)
                      .+.-.|..++..+...+.....|-..                  .++-.+|..+  ...|+....+.++-+   .+- +.
T Consensus        16 ~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~---~n~-~s   91 (172)
T 1wy6_A           16 KFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVI---NNT-LN   91 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHH---TTC-CC
T ss_pred             HHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHH---hcc-hH
Confidence            45557888888888888877654332                  1122223322  134667777666654   222 22


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642         69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus        69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      +..-.--.....+|+-++--+.+...+...+-++..+..+|.+|.+.|   +..+|-+.+.+|.+..
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg---~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVG---DERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhc---chhhHHHHHHHHHHhh
Confidence            222222245567888888888888877777778999999999999999   9999999999998765

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=89.03  E-value=8.5  Score=31.62  Aligned_cols=142  Identities=12%  Similarity=-0.038  Sum_probs=85.3

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      .+...+...++...+.......+++. ....++...+..|+++.|..++...-...+..+...+-+|.++...|+.++|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~  339 (618)
T 1qsa_A          261 RLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK  339 (618)
T ss_dssp             TSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH
Confidence            34445535566777777655444333 33344444556788988888887655433445667777888888889998888


Q ss_pred             HHHHHHhhcCCCCHH------------------------------HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642         89 FCMEELFLHHPHNHL------------------------------LHQRYADILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus        89 ~~~~~al~~~~~~~~------------------------------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      ..|+++...  .+..                              .-+..+..++..|   ....|...+...+...+  
T Consensus       340 ~~~~~~a~~--~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g---~~~~a~~ew~~~~~~~~--  412 (618)
T 1qsa_A          340 EILHQLMQQ--RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWN---LDNTARSEWANLVKSKS--  412 (618)
T ss_dssp             HHHHHHHTS--CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCC--
T ss_pred             HHHHHHhcC--CChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCC---ChhhHHHHHHHHHhcCC--
Confidence            888877642  1110                              1234455566667   77777777776665422  


Q ss_pred             HHHHHHHHHHHHHhhhhhhh
Q psy12642        139 IRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       139 ~~~~~~l~~~~~~~~~~~~a  158 (201)
                      +.-...++......|....+
T Consensus       413 ~~~~~~la~~a~~~~~~~~~  432 (618)
T 1qsa_A          413 KTEQAQLARYAFNNQWWDLS  432 (618)
T ss_dssp             HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHH
Confidence            22234455555555555444

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=87.65  E-value=2.6  Score=23.98  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH  105 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  105 (201)
                      +|..+...|++++|+.+|-+|+...|.-...+
T Consensus        23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL   54 (73)
T 3ax2_A           23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL   54 (73)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            56666667777777777777777666654443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.71  E-value=15  Score=31.86  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=61.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCC------------------
Q psy12642         40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH-HPH------------------  100 (201)
Q Consensus        40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~------------------  100 (201)
                      +...+...|.++-+.    ..+..-|.++..-+.+|.+|...|++++|..+|+++-.- .+.                  
T Consensus       816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            444556677776543    455677888888888999999999999999999877521 111                  


Q ss_pred             ----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642        101 ----NHLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus       101 ----~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                          ...++.....++...+   -++-++...+.|++.-
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~---a~~~vi~fA~lAI~~~  927 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEES---AYIDALEFSLLADASK  927 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred             ccchhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhc
Confidence                0124555666666667   7888888888888643

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=84.80  E-value=6.7  Score=26.08  Aligned_cols=58  Identities=7%  Similarity=-0.131  Sum_probs=30.3

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHH------HHHHHHcCCHHHHHHHHHHHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRK------ICILKAKNKIPEAIKELTEYLK   62 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~------a~~~~~~~~~~~A~~~~~~~~~   62 (201)
                      ...+.+|..|+|-+|-+.++.+....+..   ...+..+      |......|+...|...+.+++.
T Consensus        37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~  103 (161)
T 2ijq_A           37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ  103 (161)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34455666677777766666666654332   1122222      1223345666666666666554

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=82.64  E-value=5.2  Score=26.32  Aligned_cols=31  Identities=23%  Similarity=0.165  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642        102 HLLHQRYADILYTQGGLENIELAISHYLMAINLN  135 (201)
Q Consensus       102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  135 (201)
                      +..+...|..+...|   ++.+|.+.|+.+++..
T Consensus       101 AlfYe~wA~~lE~~g---~~~~A~~Vy~~Gi~~~  131 (152)
T 4a1g_A          101 SPLYIAWAGHLEAQG---ELQHASAVLQRGIQNQ  131 (152)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC
Confidence            344444444444455   5555555555555443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=82.24  E-value=24  Score=30.63  Aligned_cols=148  Identities=7%  Similarity=-0.015  Sum_probs=78.9

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcC-ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---C---CH----H
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKID-ETN----TAARKRKICILKAKNKIPEAIKELTEYLKKFM---T---DQ----E   69 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~---~~----~   69 (201)
                      ++.+++...|+.++++..+.+-+-.. .++    ..+.+.+|.++...+  .+++..+...+....   .   +.    .
T Consensus       379 ~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~g  456 (963)
T 4ady_A          379 TASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHG  456 (963)
T ss_dssp             HHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred             HHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHH
Confidence            45566777788888888777766421 122    244555565555444  467777777665432   0   11    2


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642         70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH--LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL  147 (201)
Q Consensus        70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  147 (201)
                      +...+|.++...++ +++...+...+..+....  .+-+.+|.++.-.+   +-+-....+..+.+...+.......++.
T Consensus       457 AaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg---n~~ai~~LL~~~~e~~~e~vrR~aalgL  532 (963)
T 4ady_A          457 ASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG---KPEAIHDMFTYSQETQHGNITRGLAVGL  532 (963)
T ss_dssp             HHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC---CHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            44456666666655 456666666665333211  23445666666666   5444444444444443343333344444


Q ss_pred             HHHHhhhhhhh
Q psy12642        148 SCHQVLTSAKC  158 (201)
Q Consensus       148 ~~~~~~~~~~a  158 (201)
                      .....|+.+.+
T Consensus       533 Gll~~g~~e~~  543 (963)
T 4ady_A          533 ALINYGRQELA  543 (963)
T ss_dssp             HHHTTTCGGGG
T ss_pred             HhhhCCChHHH
Confidence            44455665555

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=81.71  E-value=4.7  Score=27.87  Aligned_cols=92  Identities=9%  Similarity=-0.040  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW-----QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY  108 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  108 (201)
                      ....+.+|.+++..+++.+|.+.+..+++..|.+....     ..+--+-+-+|+.+. ...+++    .+.  ..+..+
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L   86 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEV   86 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHH
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHH
Confidence            35677789999999999999999999999877664322     223334456677543 333332    121  134555


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642        109 ADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus       109 a~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      ..+ .+.|+...++++++-++..+.
T Consensus        87 ~~A-vr~Gdl~~f~~~l~~~~~~f~  110 (203)
T 3t5x_A           87 TRA-VSEGNLLLLHEALAKHEAFFI  110 (203)
T ss_dssp             HHH-HHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHH-HHhCCHHHHHHHHHHhHHHHH
Confidence            554 556644455666655554433

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.59  E-value=28  Score=30.22  Aligned_cols=95  Identities=14%  Similarity=0.094  Sum_probs=68.9

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------c
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK---------------------F   64 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------~   64 (201)
                      .+..+...|.++-|.    ..+.--|.++..-+.+|.++...|++++|..+|+++-.-                     .
T Consensus       816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            445566677776544    355667788888899999999999999999999875321                     0


Q ss_pred             CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCHHH
Q psy12642         65 MTD--QETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHNHLL  104 (201)
Q Consensus        65 p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~  104 (201)
                      ++.  ...|.....++...+-++-++...+.||.. .++++..
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l  934 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL  934 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence            111  225566778888999999999999999964 4555553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 4e-12
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 3/137 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             + A++     I++      A       LK K  + EA       L+   T  ++   L
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            ++   +G+  +AV    +     P     H   A +L  QG    ++ A+ HY  AI +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRI 368

Query: 135 NEKNIRALYGLALSCHQ 151
           +     A   +  +  +
Sbjct: 369 SPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-10
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 3/137 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            ++ A+      + +   +        C+   +  I  AI      ++      + +  L
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            +    +G  A+A  C        P +       A+I   QG   NIE A+  Y  A+ +
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEV 334

Query: 135 NEKNIRALYGLALSCHQ 151
             +   A   LA    Q
Sbjct: 335 FPEFAAAHSNLASVLQQ 351

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 35/102 (34%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
              EA +   T +++  T+  +      I + +  I EA++   + L+ F         L
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116
             +   +G   +A+   +E     P     +    + L    
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 73  ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132
           EL       GD+  A     +L+   P N  +    + I +       ++ +     +AI
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR---RLDRSAHFSTLAI 60

Query: 133 NLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKH 176
             N     A   L     +     +     +  +  +  ++  +
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 14/94 (14%), Positives = 29/94 (30%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            +E A  H   + + +  NT        I     ++  +    T  +K+     E +  L
Sbjct: 14  DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108
            ++Y   G   +A+          P     +   
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 12/69 (17%), Positives = 27/69 (39%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
             EEA+      +++     AA      +L+ + K+ EA+    E ++   T  + +  +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

Query: 75  CDLYLSEGD 83
            +      D
Sbjct: 380 GNTLKEMQD 388

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 4/135 (2%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
           + ++ALE L   IK    + + R   I +L        A ++L + +K F        +L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 75  CDLYLSEGDYAKAVF-CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133
             L  +                L             ++        + E      L    
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ---DYEQVSELALQIEE 127

Query: 134 LNEKNIRALYGLALS 148
           L ++        + S
Sbjct: 128 LRQEKGFLANDTSFS 142

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 11/102 (10%), Positives = 33/102 (32%)

Query: 46  AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105
           ++ ++ +A++ L E +K    D        +L   +GD+ +A   + +     P      
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147
            +   ++      ++     +   +     E     +     
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS 109

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 5/124 (4%)

Query: 78  YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
            LSEG   +A+  + E     P +  L   + ++L   G   + E A    + +I L  +
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG---DFERADEQLMQSIKLFPE 62

Query: 138 NIRA--LYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELM 195
            +         +   Q        AA  K + +        ++        + E ++EL 
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 196 SALQ 199
             ++
Sbjct: 123 LQIE 126

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 6e-08
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 5/132 (3%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
            Y + L+ L T+  +D        +   I   +      +K  +         Q     L
Sbjct: 101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHL 158

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
            D+       ++A           P N   + + A +  ++G   +    I +Y  +I +
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG---DHLTTIFYYCRSIAV 215

Query: 135 NEKNIRALYGLA 146
                 A   L 
Sbjct: 216 KFPFPAASTNLQ 227

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 15/132 (11%), Positives = 47/132 (35%), Gaps = 4/132 (3%)

Query: 15  RYEEALEHLETIIKIDETN-TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE 73
           R E A +     I+++  N T    R++ +   +  + E +  +T  +++   + + W  
Sbjct: 58  RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117

Query: 74  LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133
              L     D ++ +  + ++      N+   Q    ++      +  +  + +    + 
Sbjct: 118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE---FKLWDNELQYVDQLLK 174

Query: 134 LNEKNIRALYGL 145
            + +N       
Sbjct: 175 EDVRNNSVWNQR 186

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 13/137 (9%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 15  RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
              E L   +++I  + +N ++   + C+L   +  P++  +        + + E  Q  
Sbjct: 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218

Query: 75  CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
                      ++ +      L         +   +       L++   +          
Sbjct: 219 FFTD----PNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV---LQSELESCKELQELEPE 271

Query: 135 NEKNIRALYGLALSCHQ 151
           N+  +  +  L  +   
Sbjct: 272 NKWCLLTIILLMRALDP 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.87
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.87
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.84
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.82
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.81
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.8
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.77
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.76
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.76
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.76
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.75
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.73
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.72
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.71
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.7
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.69
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.69
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.69
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.65
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.56
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.53
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.45
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.4
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.33
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.28
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.2
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.18
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.11
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.83
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.76
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.75
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.35
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.45
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.77
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.33
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.39
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	86.18
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.04

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-22  Score=150.58  Aligned_cols=194  Identities=12%  Similarity=0.082  Sum_probs=166.4

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +-.+..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++.+|+++..|..+|.+|...|+
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence            44677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC---------------------------------------------------CHHHHHHHHHHH
Q psy12642         84 YAKAVFCMEELFLHHPH---------------------------------------------------NHLLHQRYADIL  112 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~---------------------------------------------------~~~~~~~la~~~  112 (201)
                      +++|+..+++++...|.                                                   ++.++..+|.++
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            99988888777655443                                                   244567788999


Q ss_pred             HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--HhHHHHHHHHHHHHhhhcchHH
Q psy12642        113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISK--QMMWVSKHLARQYEEQQGNTET  190 (201)
Q Consensus       113 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~y~~~~~~~~~  190 (201)
                      ...|   ++++|+..|++++..+|+++.+|..+|.++...|++++|.....+....  -...+...+...|..+...+++
T Consensus       183 ~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         183 NLSG---EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHH---HHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence            9999   9999999999999999999999999999999999999998766655432  2233455677778888887888


Q ss_pred             HHHHHhhccC
Q psy12642        191 LTELMSALQV  200 (201)
Q Consensus       191 ~~~~~~~~~~  200 (201)
                      +..+.+++.+
T Consensus       260 ~~~~~~al~l  269 (323)
T d1fcha_         260 VEHFLEALNM  269 (323)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888777654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5e-23  Score=155.73  Aligned_cols=178  Identities=16%  Similarity=0.112  Sum_probs=152.6

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +.++..+...|++++|+..++++...+|..+..+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus       207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  286 (388)
T d1w3ba_         207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred             HHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            44566788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK  163 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (201)
                      +++|+..+++++...|.++..+..+|.++...|   ++++|+..|+++++++|+++.+++.+|.++...|++++|.....
T Consensus       287 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  363 (388)
T d1w3ba_         287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCccchhhhHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999   99999999999999999999999999999999999999977666


Q ss_pred             HHHHHH--hHHHHHHHHHHHHhh
Q psy12642        164 KEISKQ--MMWVSKHLARQYEEQ  184 (201)
Q Consensus       164 ~~~~~~--~~~~~~~l~~~y~~~  184 (201)
                      +...--  -..+...+...|+++
T Consensus       364 ~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         364 EAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHc
Confidence            554211  123445566666553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-21  Score=148.25  Aligned_cols=192  Identities=17%  Similarity=0.080  Sum_probs=166.8

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+...|++++|...++++++.+|+++.++..+|.++...|++++|+..+++.....|.++..+..+|.++...|+++
T Consensus       175 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  254 (388)
T d1w3ba_         175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHH
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      +|+..|++++..+|+++.++..+|.++...|   ++++|+..++.++...|.+...+..++.++...|++++|....++.
T Consensus       255 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  331 (388)
T d1w3ba_         255 LAIDTYRRAIELQPHFPDAYCNLANALKEKG---SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999   9999999999999999999999999999999999999997766654


Q ss_pred             HHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642        166 ISKQ--MMWVSKHLARQYEEQQGNTETLTELMSALQV  200 (201)
Q Consensus       166 ~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~  200 (201)
                      ....  ...+...+...|......++++..+.+++.+
T Consensus       332 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4221  2234455777788888888888888877765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.5e-22  Score=148.25  Aligned_cols=147  Identities=10%  Similarity=0.027  Sum_probs=140.0

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      ...+.+.+.+++|+..++++++.+|.+..+|..+|.++...| ++++|+..+++++..+|++..+|..+|.++..+|+++
T Consensus        50 ~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~  129 (315)
T d2h6fa1          50 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS  129 (315)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHH
Confidence            344667899999999999999999999999999999999987 5999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA  156 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  156 (201)
                      +|+..+++++.++|.+..+|..+|.++...+   ++++|+..|+++++++|++..+|.+++.++...+...
T Consensus       130 eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~---~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         130 QELEFIADILNQDAKNYHAWQHRQWVIQEFK---LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHhhhhhhhhcchHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence            9999999999999999999999999999999   9999999999999999999999999999998887754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-21  Score=145.49  Aligned_cols=161  Identities=20%  Similarity=0.206  Sum_probs=145.7

Q ss_pred             hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----------------
Q psy12642          3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM-----------------   65 (201)
Q Consensus         3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----------------   65 (201)
                      +...+..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|                 
T Consensus        56 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (323)
T d1fcha_          56 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG  135 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred             HHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcc
Confidence            445677889999999999999999999999999999999999999999999888877655443                 


Q ss_pred             --------------------------------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642         66 --------------------------------T--DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI  111 (201)
Q Consensus        66 --------------------------------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  111 (201)
                                                      +  ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  215 (323)
T d1fcha_         136 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT  215 (323)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhc
Confidence                                            2  245677889999999999999999999999999999999999999


Q ss_pred             HHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        112 LYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       112 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      +...|   ++++|++.|+++++++|+++.+++++|.+|..+|++++|.....+..
T Consensus       216 ~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  267 (323)
T d1fcha_         216 LANGN---QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL  267 (323)
T ss_dssp             HHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ccccc---cchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999   99999999999999999999999999999999999999977665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.7e-20  Score=135.68  Aligned_cols=146  Identities=14%  Similarity=0.088  Sum_probs=124.8

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          8 IGCFHFFRYEEALEHLETIIKID----ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +.+....+++.|+..+++++...    |....+++.+|.+|...|++++|+..|+++++++|+++.+|..+|.+|..+|+
T Consensus         7 ~~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~   86 (259)
T d1xnfa_           7 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN   86 (259)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred             hcccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH
Confidence            34455667788888888888753    44567888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA  156 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  156 (201)
                      +++|+..|++++.++|+++.++..+|.++...|   ++++|+..|+++++.+|++......++.++...+...
T Consensus        87 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  156 (259)
T d1xnfa_          87 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG---RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ  156 (259)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh---hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHH
Confidence            999999999999999999999999999999999   9999999999999999988887777777777666443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=6.4e-21  Score=137.93  Aligned_cols=112  Identities=8%  Similarity=-0.136  Sum_probs=105.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   84 (201)
                      ..+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++
T Consensus        42 ~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  121 (259)
T d1xnfa_          42 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD  121 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      ++|+..|+++++.+|.+......++.+....+
T Consensus       122 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_         122 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence            99999999999999999988877777766666

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.8e-20  Score=119.24  Aligned_cols=111  Identities=20%  Similarity=0.065  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      +...|..++..|++++|+..|.++++.+|+++.+|..+|.+|..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642        117 GLENIELAISHYLMAINLNEKNIRALYGLALSCH  150 (201)
Q Consensus       117 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  150 (201)
                         ++++|+..|+++++++|+++.++..++.+..
T Consensus        86 ---~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          86 ---RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             ---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence               9999999999999999999998888877643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.4e-20  Score=138.45  Aligned_cols=151  Identities=12%  Similarity=0.076  Sum_probs=136.9

Q ss_pred             HHhhhhcc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          7 IIGCFHFF-RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         7 ~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      +..+...| ++++|+.+++++++.+|.+..+|..+|.++..+|++++|+..+.++++.+|++..+|..+|.++...|+++
T Consensus        84 ~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~  163 (315)
T d2h6fa1          84 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD  163 (315)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhH
Confidence            44456655 59999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC---cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGG---LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      +|+.++++++.++|.+..+|..+|.++...+.   ...+++|+..+.++++++|++..+|..++.++...|. .++
T Consensus       164 ~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~-~~~  238 (315)
T d2h6fa1         164 NELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL-SKY  238 (315)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG-GGC
T ss_pred             HHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcCh-HHH
Confidence            99999999999999999999999999887762   1237899999999999999999999999998876553 444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.2e-20  Score=116.78  Aligned_cols=106  Identities=13%  Similarity=0.073  Sum_probs=102.2

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      +..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.++++.+|+++.+|+.+|.++..+|++++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642         87 AVFCMEELFLHHPHNHLLHQRYADIL  112 (201)
Q Consensus        87 A~~~~~~al~~~~~~~~~~~~la~~~  112 (201)
                      |+.+|++++..+|+++.++..++.+.
T Consensus        90 A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          90 AKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.5e-19  Score=120.07  Aligned_cols=115  Identities=13%  Similarity=0.000  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642         36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ  115 (201)
Q Consensus        36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  115 (201)
                      .+...|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++...
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            35567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642        116 GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus       116 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      |   ++++|+..|++++.++|+++.++..++.+....+
T Consensus        92 g---~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          92 G---KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             T---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9   9999999999999999999999988888765544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.9e-19  Score=121.67  Aligned_cols=135  Identities=13%  Similarity=0.104  Sum_probs=116.3

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK   86 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~   86 (201)
                      ++.+...|+|++|++.|.++   .|.++.+++.+|.++..+|++++|+..|+++++++|+++.+|..+|.++..+|++++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence            45678899999999999864   556788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCC----------------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642         87 AVFCMEELFLHHPHN----------------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL  147 (201)
Q Consensus        87 A~~~~~~al~~~~~~----------------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  147 (201)
                      |+..|++++...+.+                ..+++.+|.++...+   ++++|++.+.+++.+.|+........+.
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~---~~~~A~~~l~~A~~~~~~~~~~~~~~Al  162 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE---EWKKAEEQLALATSMKSEPRHSKIDKAM  162 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence            999999999765543                367889999999999   9999999999999998875444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-18  Score=117.78  Aligned_cols=121  Identities=14%  Similarity=0.118  Sum_probs=107.9

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      .+..+++.|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++.+|+++.+|..+|.++..+|+++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH  127 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~  127 (201)
                      +|+.++++++.++|+++.++..++.+....+ ...+++|+..
T Consensus        96 eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~~~a~~~  136 (159)
T d1a17a_          96 AALRDYETVVKVKPHDKDAKMKYQECNKIVK-QKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence            9999999999999999999888887754333 0035555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.7e-19  Score=124.61  Aligned_cols=101  Identities=14%  Similarity=0.013  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      ..+...|..++..|++++|+..|++++..+|+++.+|..+|.+|...|++++|+.+|++++.++|+++.+++.+|.++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCcccHHHHHHHHHHHHcCCccc
Q psy12642        115 QGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                      +|   ++++|+..|+++++++|++
T Consensus        85 l~---~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          85 ME---SYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             TT---CHHHHHHHHHHHHHHHHHT
T ss_pred             CC---CHHHHHHHHHHHHHhCccc
Confidence            66   6666666666666666643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.9e-17  Score=111.72  Aligned_cols=121  Identities=13%  Similarity=0.099  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---------------QETWQELCDLYLSEGDYAKAVFCMEELFLHHP   99 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   99 (201)
                      ..+...|..++..|++++|+..|++++...|..               ..++..+|.+|.++|++++|+.++++++.++|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence            445567888888888888888888888876654               24567799999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642        100 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       100 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      +++.+++.+|.++..+|   ++++|+..|+++++++|+++.+...++.+....+...+.
T Consensus        94 ~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVN---DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhh---hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   999999999999999999999999999998887765544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.2e-18  Score=121.35  Aligned_cols=111  Identities=11%  Similarity=-0.027  Sum_probs=98.3

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA   85 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   85 (201)
                      -+..++..|+|++|+..|+++++.+|.++.+|..+|.+|...|++++|+..++++++++|+++.+|..+|.+|..+|+++
T Consensus        10 ~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~   89 (201)
T d2c2la1          10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD   89 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         86 KAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      +|+..|++++.++|++...+...+......+
T Consensus        90 ~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~  120 (201)
T d2c2la1          90 EAIANLQRAYSLAKEQRLNFGDDIPSALRIA  120 (201)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            9999999999988865444333333333333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=7.2e-17  Score=120.83  Aligned_cols=146  Identities=12%  Similarity=0.026  Sum_probs=130.8

Q ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--
Q psy12642         15 RYEEALEHLETIIKIDETNTAARKRKICILKAK----------NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG--   82 (201)
Q Consensus        15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--   82 (201)
                      ..++|++.++++++.+|++..+|..++.++...          |++++|+.+++++++.+|+++.+|..+|.++...+  
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            358999999999999999999998877775554          34789999999999999999999999999888766  


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHH-HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLH-QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~-~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      ++++|+..+++++..+|.+...+ ...|.++...+   .+++|+..++++++.+|++..+|.+++.++..+|++++|...
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~  200 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAV---APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC---CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc---ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence            48999999999999999998886 56778888889   999999999999999999999999999999999999999664


Q ss_pred             hH
Q psy12642        162 KK  163 (201)
Q Consensus       162 ~~  163 (201)
                      ..
T Consensus       201 ~~  202 (334)
T d1dcea1         201 GR  202 (334)
T ss_dssp             CS
T ss_pred             HH
Confidence            43

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.5e-17  Score=112.94  Aligned_cols=122  Identities=11%  Similarity=0.046  Sum_probs=109.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q psy12642         38 KRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG  117 (201)
Q Consensus        38 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~  117 (201)
                      +..|..+...|++++|+..|.+   ..|.++.+|+.+|.+|..+|++++|+.+|++++.++|+++.+++.+|.++..+| 
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g-   84 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE-   84 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc-
Confidence            3568999999999999999986   457788999999999999999999999999999999999999999999999999 


Q ss_pred             cccHHHHHHHHHHHHcCCcc----------------cHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642        118 LENIELAISHYLMAINLNEK----------------NIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       118 ~~~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                        ++++|+..|++++...|.                ...++++++.++..+|++++|.......
T Consensus        85 --~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          85 --KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             --CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              999999999999976543                2478899999999999999997654443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.75  E-value=6.4e-17  Score=108.15  Aligned_cols=118  Identities=21%  Similarity=0.156  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD----------------QETWQELCDLYLSEGDYAKAVFCMEELFLHH   98 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   98 (201)
                      ..+...|..++..|++.+|+..|.+++...|..                ..++..+|.+|+.+|++++|+.++++++.++
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            334456777777888888888888877755432                1356779999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh
Q psy12642         99 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS  155 (201)
Q Consensus        99 ~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  155 (201)
                      |.+..+++.+|.++..+|   ++++|+..|+++++++|++..+...+..+..++++.
T Consensus        98 p~~~ka~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFG---FLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHhHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999   999999999999999999999999999988877653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.74  E-value=4.4e-17  Score=103.23  Aligned_cols=94  Identities=13%  Similarity=0.099  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642         36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ  115 (201)
Q Consensus        36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  115 (201)
                      ..+.+|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+.+|++++.++|+++.++..+|.++...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            34667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcccHHHHHHHHHHHH
Q psy12642        116 GGLENIELAISHYLMAI  132 (201)
Q Consensus       116 ~~~~~~~~A~~~~~~al  132 (201)
                      |   ++++|++.+++.+
T Consensus        98 g---~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 H---NANAALASLRAWL  111 (112)
T ss_dssp             H---HHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHh
Confidence            8   8888888888865

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=7.7e-17  Score=109.50  Aligned_cols=119  Identities=15%  Similarity=0.006  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------------cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642         37 RKRKICILKAKNKIPEAIKELTEYLKK----------------FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  100 (201)
                      +...|..++..|++++|+..|.++++.                .|....++..+|.++.++|++++|+..++++++++|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            345677778888888888888777653                4555678889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642        101 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus       101 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      ++.+++.+|.++...|   ++++|+..|+++++++|++..+...+..+........+.
T Consensus       110 ~~~a~~~~g~~~~~l~---~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         110 NTKALYRRAQGWQGLK---EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999   999999999999999999999999999998877765554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-16  Score=107.99  Aligned_cols=110  Identities=15%  Similarity=0.065  Sum_probs=101.0

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETN---------------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW   71 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   71 (201)
                      +..++..|+|++|+..|.+++...|..               ..++..+|.+|..+|++++|+..+++++..+|+++.++
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~   99 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL   99 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhh
Confidence            456889999999999999999886643               25567799999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      +.+|.+|..+|++++|+.+|++++.++|+++.+...++.+....+
T Consensus       100 ~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1         100 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999877666

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.72  E-value=4.4e-16  Score=105.59  Aligned_cols=121  Identities=17%  Similarity=0.159  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---------------QETWQELCDLYLSEGDYAKAVFCMEELFLHH   98 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   98 (201)
                      ...+...|..++..|++.+|+..|.+++...|..               ..++..+|.+|..+|++++|+..+++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            3456678888999999999999999888755432               2356679999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhh
Q psy12642         99 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK  157 (201)
Q Consensus        99 ~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  157 (201)
                      |.++.+++.+|.++...|   ++++|+..|.++++++|+++.++..++.+....+...+
T Consensus        95 p~~~~a~~~~~~~~~~l~---~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMN---EFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999   99999999999999999999999999988877765544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.8e-17  Score=105.54  Aligned_cols=111  Identities=14%  Similarity=-0.025  Sum_probs=80.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHH
Q psy12642         40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG---DYAKAVFCMEELFLHHPHN--HLLHQRYADILYT  114 (201)
Q Consensus        40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~  114 (201)
                      ++..+...+++++|.+.|++++..+|+++.+++.+|.++.+.+   ++++|+..|++++..+|.+  +.+++.+|.++..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            4556667777777777777777777777777777777776543   4456777777777776654  3467777777777


Q ss_pred             cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642        115 QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL  153 (201)
Q Consensus       115 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  153 (201)
                      .|   ++++|+++|+++++++|++..+...+..+..+++
T Consensus        85 ~g---~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          85 LK---EYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             Hh---hhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            77   7777777777777777777777777776666554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.71  E-value=8.2e-17  Score=101.96  Aligned_cols=92  Identities=13%  Similarity=0.002  Sum_probs=88.5

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +-.+..+++.|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+|..+|.+|..+|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            44667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy12642         84 YAKAVFCMEELF   95 (201)
Q Consensus        84 ~~~A~~~~~~al   95 (201)
                      +++|++++++.|
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999986

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=8.4e-17  Score=106.56  Aligned_cols=125  Identities=14%  Similarity=0.114  Sum_probs=71.3

Q ss_pred             hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642         10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF   89 (201)
Q Consensus        10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~   89 (201)
                      +.+.+.|++|+..|+++++.+|+++.++..+|.++...+++..+.+                        ..+.+++|+.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai~   62 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAIT   62 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHHH
Confidence            3455667777777777777777777777777777765433321111                        1122344555


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHcCC--------cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         90 CMEELFLHHPHNHLLHQRYADILYTQGG--------LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        90 ~~~~al~~~~~~~~~~~~la~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      .|+++++++|+++.+++++|.++...|.        ...+++|+++|+++++++|++...+..|+.+....+.+.++
T Consensus        63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555554443320        01456677777777777777777777777666665555444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=3.9e-16  Score=105.92  Aligned_cols=115  Identities=8%  Similarity=0.015  Sum_probs=103.5

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKI----------------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET   70 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   70 (201)
                      +..++..|+|.+|+..|.++++.                +|....++..+|.++..+|++++|+..+.++++++|+++.+
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a  113 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA  113 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhH
Confidence            45678899999999999999863                45667788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA  124 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A  124 (201)
                      |+.+|.+|..+|++++|+..|+++++++|++..+...++.+.....   ...++
T Consensus       114 ~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~---~~~~~  164 (169)
T d1ihga1         114 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK---AQKDK  164 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HHHHH
T ss_pred             HHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHH
Confidence            9999999999999999999999999999999999999998877666   55443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.69  E-value=9.2e-16  Score=103.99  Aligned_cols=123  Identities=12%  Similarity=-0.017  Sum_probs=105.1

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDET---------------NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW   71 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   71 (201)
                      +..+++.|+|.+|+..|.+++...|.               ...++..+|.++..+|++++|+..+++++.++|++..++
T Consensus        22 G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~  101 (168)
T d1kt1a1          22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGL  101 (168)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHH
Confidence            56689999999999999999974322               225566799999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH-HHHHHHHHHH
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE-LAISHYLMAI  132 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~-~A~~~~~~al  132 (201)
                      +.+|.++..+|++++|+..|++++.++|+++.+...++.+....+   .+. ...+.|.+.+
T Consensus       102 ~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~---~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         102 YRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK---EHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999877666   443 3444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.69  E-value=4.8e-16  Score=103.79  Aligned_cols=110  Identities=13%  Similarity=0.033  Sum_probs=98.9

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCccc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETN----------------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET   70 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   70 (201)
                      +..++..|+|.+|+..|.+++...|..                ..++..+|.+|..+|++++|+..+.+++..+|++..+
T Consensus        24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka  103 (153)
T d2fbna1          24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKA  103 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhh
Confidence            466899999999999999999865422                2466789999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642         71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG  116 (201)
Q Consensus        71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  116 (201)
                      |+.+|.++..+|++++|+.+|++++.++|+|..+...++.+....+
T Consensus       104 ~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         104 LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888765543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.9e-16  Score=100.65  Aligned_cols=109  Identities=16%  Similarity=0.084  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH-------HHHH
Q psy12642         35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL-------LHQR  107 (201)
Q Consensus        35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~  107 (201)
                      ..+..+|..++..|++++|+.+|.++++.+|+++.++..+|.+|..+|+|++|+..+++++.++|.++.       ++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            345578999999999999999999999999999999999999999999999999999999998887643       5667


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642        108 YADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL  147 (201)
Q Consensus       108 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  147 (201)
                      +|.++...+   ++++|+.+|++++..+|+ +.....+..
T Consensus        85 lg~~~~~~~---~~~~A~~~~~kal~~~~~-~~~~~~l~~  120 (128)
T d1elra_          85 IGNSYFKEE---KYKDAIHFYNKSLAEHRT-PDVLKKCQQ  120 (128)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             HHHHHHHhC---CHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence            788888888   999999999999988765 444444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=1.2e-16  Score=105.84  Aligned_cols=73  Identities=14%  Similarity=0.116  Sum_probs=54.6

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----------cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642         79 LSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT----------QGGLENIELAISHYLMAINLNEKNIRALYGLALS  148 (201)
Q Consensus        79 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  148 (201)
                      .+.+.|++|+..|+++++++|+++.+++.+|.++..          .+   .+++|+..|+++++++|+++.+++++|.+
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~---~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ---MIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHH---HHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            344455566666666666666666666666655542          35   89999999999999999999999999999


Q ss_pred             HHHhhh
Q psy12642        149 CHQVLT  154 (201)
Q Consensus       149 ~~~~~~  154 (201)
                      |...|.
T Consensus        85 y~~~g~   90 (145)
T d1zu2a1          85 YTSFAF   90 (145)
T ss_dssp             HHHHHH
T ss_pred             HHHccc
Confidence            998775

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.3e-16  Score=101.18  Aligned_cols=107  Identities=14%  Similarity=0.024  Sum_probs=95.8

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcC
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN---KIPEAIKELTEYLKKFMTD--QETWQELCDLYLSEG   82 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~   82 (201)
                      -.+...+++++|.+.|++++..+|.++.+++.+|.++...+   ++++|+..+++++..+|.+  ..+++.+|.+|...|
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g   86 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   86 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh
Confidence            45677899999999999999999999999999999998755   4567999999999988765  458999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642         83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYT  114 (201)
Q Consensus        83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  114 (201)
                      ++++|+.+|++++.++|++..+...++.+...
T Consensus        87 ~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          87 EYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999998888877544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.2e-15  Score=112.66  Aligned_cols=156  Identities=8%  Similarity=-0.030  Sum_probs=134.4

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhcCCHHHH
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK--IPEAIKELTEYLKKFMTDQETW-QELCDLYLSEGDYAKA   87 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~-~~l~~~~~~~~~~~~A   87 (201)
                      ...|++++|+.+++++++.+|.++.+|..+|.++...++  +++|+..+++++..+|.+..++ ...|.++...+.+++|
T Consensus        84 ~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence            445678999999999999999999999999999888765  8999999999999999998886 4678899999999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCc-------------------------------------------------
Q psy12642         88 VFCMEELFLHHPHNHLLHQRYADILYTQGGL-------------------------------------------------  118 (201)
Q Consensus        88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-------------------------------------------------  118 (201)
                      +.++++++..+|++..++..+|.++...|..                                                 
T Consensus       164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~  243 (334)
T d1dcea1         164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF  243 (334)
T ss_dssp             HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhh
Confidence            9999999999999999999999998887621                                                 


Q ss_pred             ------------ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        119 ------------ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       119 ------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                                  .++.+|+..+.+++..+|++..++..+|.++...|++++|.....+..
T Consensus       244 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai  303 (334)
T d1dcea1         244 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK  303 (334)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                        146778888888888888888888888888888888888866555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=7.9e-15  Score=107.67  Aligned_cols=156  Identities=14%  Similarity=0.037  Sum_probs=128.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQE   73 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~   73 (201)
                      .+..|...|+|++|++.|.++++..      +....++..+|.+|..+|++++|+..+++++...+..      ..++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            3455778999999999999999863      3345788999999999999999999999999876554      567788


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH-------
Q psy12642         74 LCDLYLS-EGDYAKAVFCMEELFLHHPH------NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI-------  139 (201)
Q Consensus        74 l~~~~~~-~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------  139 (201)
                      +|.+|.. .|++++|+.+|++++.+.+.      ...++..+|.++...|   ++++|+..|++++...|..+       
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g---~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG---QYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC---hHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            8988865 69999999999999976432      2346888999999999   99999999999999887643       


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642        140 RALYGLALSCHQVLTSAKCSAAKKK  164 (201)
Q Consensus       140 ~~~~~l~~~~~~~~~~~~a~~~~~~  164 (201)
                      ..+...+.++...|+...|.....+
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~  224 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQE  224 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4567888899999999988664443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.8e-15  Score=95.48  Aligned_cols=103  Identities=12%  Similarity=0.190  Sum_probs=90.8

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-------ETWQELCDLY   78 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~   78 (201)
                      .+..++..|+|++|+.+|.++++.+|+++.++..+|.+|..+|++++|+..+++++..+|+++       .++..+|.++
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999988774       3666788888


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         79 LSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        79 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      ...+++++|+.+|++++..+|. +.....+.
T Consensus        90 ~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  119 (128)
T d1elra_          90 FKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQ  119 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            9999999999999999998875 44444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8e-15  Score=115.37  Aligned_cols=142  Identities=15%  Similarity=0.054  Sum_probs=100.6

Q ss_pred             hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12642         12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCM   91 (201)
Q Consensus        12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   91 (201)
                      ..+.|+.|+..+.+++..+|.+...+..+|.++...|+.+.|+..+.+++..+|  ..++..+|.++...|++++|+.+|
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y  175 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHH
Confidence            356778888888888888999999999999999999999999999999988766  467888999999999999999999


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642         92 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC  158 (201)
Q Consensus        92 ~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  158 (201)
                      ++++.++|++...+..+|.++...|   ++.+|+.+|.+++..+|..+.++.+|+..+.+..+..++
T Consensus       176 ~~A~~l~P~~~~~~~~Lg~~~~~~~---~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~  239 (497)
T d1ya0a1         176 RHAAQLVPSNGQPYNQLAILASSKG---DHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE  239 (497)
T ss_dssp             HHHHHHCTTBSHHHHHHHHHHHHTT---CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999999999999999   999999999999999999999999999999887765544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.8e-13  Score=100.04  Aligned_cols=152  Identities=9%  Similarity=-0.049  Sum_probs=87.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-hcCC
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETNT-AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYL-SEGD   83 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~   83 (201)
                      |+......|++++|...|+++++..|.+. .+|...+......|+++.|...|.++++..|.+...|...+.... ..|+
T Consensus       105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~  184 (308)
T d2onda1         105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD  184 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccC
Confidence            44445556666666666666666655443 345555666666666666666666666666666666655555433 3456


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc----HHHHHHHHHHHHHhhhhhhhh
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN----IRALYGLALSCHQVLTSAKCS  159 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~a~  159 (201)
                      .+.|...|++++..+|.++..|..++..+...|   +++.|...|+++++..|.+    ...|..........|+...+.
T Consensus       185 ~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g---~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~  261 (308)
T d2onda1         185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL  261 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            666666666666666666666666666666666   6666666666666654422    234444455555555555543


Q ss_pred             h
Q psy12642        160 A  160 (201)
Q Consensus       160 ~  160 (201)
                      .
T Consensus       262 ~  262 (308)
T d2onda1         262 K  262 (308)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.1e-14  Score=86.12  Aligned_cols=83  Identities=19%  Similarity=0.175  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642         68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN-------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR  140 (201)
Q Consensus        68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  140 (201)
                      ++-++.+|.+++.+|+|++|+.+|++++.+.|.+       ..++..+|.++...|   ++++|+.+|+++++++|+++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g---~~~~A~~~y~~aL~l~P~~~~   81 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG---DLDKALLLTKKLLELDPEHQR   81 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC---ChHHHHHHHHHHHHhCcCCHH
Confidence            4456677777777777777777777777664432       456777777777777   777777777777777777777


Q ss_pred             HHHHHHHHHHHhh
Q psy12642        141 ALYGLALSCHQVL  153 (201)
Q Consensus       141 ~~~~l~~~~~~~~  153 (201)
                      ++.+++.+...++
T Consensus        82 a~~Nl~~~~~~l~   94 (95)
T d1tjca_          82 ANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            7777776665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.1e-12  Score=96.83  Aligned_cols=150  Identities=8%  Similarity=-0.046  Sum_probs=134.9

Q ss_pred             ccCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q psy12642         13 FFRYEEALEHLETIIKI-DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-ETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      .+..++|...|+++++. .|.+...|...+.+....|+++.|...+++++...|.+. .+|..++.+..+.|+++.|...
T Consensus        77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            34568899999999974 789999999999999999999999999999999999774 5799999999999999999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHH-HcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642         91 MEELFLHHPHNHLLHQRYADILY-TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus        91 ~~~al~~~~~~~~~~~~la~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      |++++...|.+...+...+.... ..+   +.+.|...|++++...|+++..|...+......|+.++|+.-.++.
T Consensus       157 ~~~al~~~~~~~~~~~~~a~~e~~~~~---~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         157 FKKAREDARTRHHVYVTAALMEYYCSK---DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHTSTTCCTHHHHHHHHHHHHTSC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            99999999999999999888754 457   8999999999999999999999999999999999999997755443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.45  E-value=6.1e-13  Score=88.66  Aligned_cols=97  Identities=10%  Similarity=-0.021  Sum_probs=82.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------
Q psy12642         39 RKICILKAKNKIPEAIKELTEYLKKFMTD------------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPH------  100 (201)
Q Consensus        39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------  100 (201)
                      ..|..++..|++++|+..|++++++.|+.            ..+|..+|.+|..+|++++|+..+++++.+.|.      
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            34778888999999999999999988764            357888999999999999999999999976432      


Q ss_pred             -----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642        101 -----NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN  138 (201)
Q Consensus       101 -----~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  138 (201)
                           ...+++++|.++..+|   ++++|+..|++++++.|+.
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg---~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLG---RGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHC
T ss_pred             cccchhHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHhhHHh
Confidence                 1336788999999999   9999999999999987753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=4.4e-12  Score=92.71  Aligned_cols=143  Identities=14%  Similarity=0.003  Sum_probs=112.1

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCC------HHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDETN------TAARKRKICILKA-KNKIPEAIKELTEYLKKFMTD------QETWQ   72 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~------~~~~~   72 (201)
                      .+..|...|++++|+..|+++++..+..      ..++..+|.++.. .|++++|+..+++++.+.+..      ..++.
T Consensus        83 ~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~  162 (290)
T d1qqea_          83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI  162 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence            3566888999999999999999876544      5777788888865 699999999999998864432      45688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCH-------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH-----
Q psy12642         73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNH-------LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR-----  140 (201)
Q Consensus        73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----  140 (201)
                      .+|.++..+|+|++|+..|++++...|.++       ..++..|.++...+   +++.|...++++++.+|..+.     
T Consensus       163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---d~~~A~~~~~~~~~~~~~~~~sre~~  239 (290)
T d1qqea_         163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT---DAVAAARTLQEGQSEDPNFADSRESN  239 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT---CHHHHHHHHHGGGCC---------HH
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCccchHHHH
Confidence            899999999999999999999999887654       35678888889999   999999999999999986443     


Q ss_pred             HHHHHHHHHHH
Q psy12642        141 ALYGLALSCHQ  151 (201)
Q Consensus       141 ~~~~l~~~~~~  151 (201)
                      ....+..++..
T Consensus       240 ~l~~l~~a~~~  250 (290)
T d1qqea_         240 FLKSLIDAVNE  250 (290)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            33444444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-12  Score=79.95  Aligned_cols=81  Identities=11%  Similarity=0.069  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642         34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ  106 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  106 (201)
                      +.-.+.+|.++...|++++|+..++++++..|.+       ..++..+|.++.+.|++++|+.+++++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4456789999999999999999999999986544       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy12642        107 RYADILYT  114 (201)
Q Consensus       107 ~la~~~~~  114 (201)
                      +++.+...
T Consensus        85 Nl~~~~~~   92 (95)
T d1tjca_          85 NLKYFEYI   92 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.40  E-value=3e-13  Score=97.69  Aligned_cols=130  Identities=14%  Similarity=0.017  Sum_probs=113.2

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      ..+..|++++|+..++++++.+|+++.++..++.+++..|++++|+..++++++.+|++...+..++.++...+..+++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999988877777766


Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642         89 FCMEELFL-HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA  141 (201)
Q Consensus        89 ~~~~~al~-~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  141 (201)
                      ....+... ..|.++..+...+..+...|   ++++|...+.++.+..|+.+..
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~g---d~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQ---DYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCCCCcc
Confidence            65544333 35666677788899999999   9999999999999999876543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=7.1e-11  Score=87.01  Aligned_cols=155  Identities=10%  Similarity=0.001  Sum_probs=126.6

Q ss_pred             HHHHhhhhccCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHH
Q psy12642          5 VYIIGCFHFFRYEEALEHLETIIKIDETNT-----AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQE   73 (201)
Q Consensus         5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~   73 (201)
                      +.+..++..|++++|+..++++++..|.+.     .++..+|.++...|++++|+..+++++...|..      ...+..
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            345567889999999999999999988763     577889999999999999999999999865433      346677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCC--------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-----cHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLHHP--------HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-----NIR  140 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~  140 (201)
                      ++.++...|++..|...+.+++...+        ........+|.++...|   +++.+...+.+++...+.     ...
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA---RLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc---chhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            89999999999999999999986532        12346778899999999   999999999999876543     356


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhh
Q psy12642        141 ALYGLALSCHQVLTSAKCSAAK  162 (201)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~  162 (201)
                      ++...+.++...++..++....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~  195 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQL  195 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHH
Confidence            7778888888888888775533

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.33  E-value=7.6e-13  Score=88.20  Aligned_cols=94  Identities=14%  Similarity=-0.006  Sum_probs=80.7

Q ss_pred             HHhhhhccCHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------
Q psy12642          7 IIGCFHFFRYEEALEHLETIIKIDETN------------TAARKRKICILKAKNKIPEAIKELTEYLKKFMT--------   66 (201)
Q Consensus         7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------   66 (201)
                      +..++..|+|++|+..|+++++..|+.            ..++..+|.+|..+|++++|+..+++++...|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            455778899999999999999987653            367889999999999999999999999986542        


Q ss_pred             ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642         67 ---DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH  100 (201)
Q Consensus        67 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  100 (201)
                         ...+++.+|.+|..+|++++|+..|++++.+.|.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence               1346788999999999999999999999988653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3.2e-09  Score=77.86  Aligned_cols=157  Identities=14%  Similarity=-0.021  Sum_probs=130.7

Q ss_pred             HHHhhhhccCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHH
Q psy12642          6 YIIGCFHFFRYEEALEHLETIIKIDE-----TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQE   73 (201)
Q Consensus         6 ~~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~   73 (201)
                      .+..+...|+++.+...+.+++...+     ....++...+..+...+++..+...+.++....+..       ..++..
T Consensus       139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~  218 (366)
T d1hz4a_         139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV  218 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence            34567789999999999999998654     335677788889999999999999999888754332       346777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc------CCcccHHHHH
Q psy12642         74 LCDLYLSEGDYAKAVFCMEELFLHHPHN----HLLHQRYADILYTQGGLENIELAISHYLMAIN------LNEKNIRALY  143 (201)
Q Consensus        74 l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~  143 (201)
                      ++.++...|++++|...+++++...|.+    ...+..+|.++...|   ++++|+..+++++.      ..|....++.
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  295 (366)
T d1hz4a_         219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG---EFEPAEIVLEELNENARSLRLMSDLNRNLL  295 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence            8999999999999999999999887754    346778999999999   99999999999983      4567788999


Q ss_pred             HHHHHHHHhhhhhhhhhhhHHH
Q psy12642        144 GLALSCHQVLTSAKCSAAKKKE  165 (201)
Q Consensus       144 ~l~~~~~~~~~~~~a~~~~~~~  165 (201)
                      .++.+|...|+.++|.....+.
T Consensus       296 ~la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         296 LLNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999997765544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.2e-12  Score=98.66  Aligned_cols=118  Identities=14%  Similarity=-0.049  Sum_probs=74.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHH
Q psy12642         44 LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIEL  123 (201)
Q Consensus        44 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~  123 (201)
                      ....+.++.++..+.+.+..+|++...+..+|..+...|++++|+..+.+++..+|  ..++..+|.++...+   ++++
T Consensus        96 ~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~---~~~~  170 (497)
T d1ya0a1          96 EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRN---QTSQ  170 (497)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcc---cHHH
Confidence            33445566677777777778899999999999999999999999999999988776  467889999999999   9999


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642        124 AISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI  166 (201)
Q Consensus       124 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (201)
                      |+.+|+++++++|+++.++.+||.++...|+..+|.....+..
T Consensus       171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999977665554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=3.8e-10  Score=76.47  Aligned_cols=115  Identities=12%  Similarity=0.088  Sum_probs=82.0

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA   87 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A   87 (201)
                      ......|++++|++.|.+++...+.......       ..+.+     .......+.+....++..++.++...|++++|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~-------~~~~w-----~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL-------RDFQF-----VEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG-------TTSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccC-------cchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            4455666666666666666666554321100       00111     01111222233456788899999999999999


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH-------HcCCcc
Q psy12642         88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA-------INLNEK  137 (201)
Q Consensus        88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a-------l~~~p~  137 (201)
                      +.++++++..+|.+..+|..++.++...|   ++.+|++.|+++       +.+.|.
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~G---r~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSD---RQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            99999999999999999999999999999   999999999998       456665

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.18  E-value=3.9e-11  Score=86.41  Aligned_cols=117  Identities=10%  Similarity=-0.014  Sum_probs=100.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccH
Q psy12642         42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI  121 (201)
Q Consensus        42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~  121 (201)
                      .-.+..|++++|+..++++++.+|++..++..+|.+++..|++++|+..|+++++++|++...+..++.++...+   ..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~---~~   80 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ---AR   80 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc---cc
Confidence            345678999999999999999999999999999999999999999999999999999999999999999988877   77


Q ss_pred             HHHHHHHHHHHc-CCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642        122 ELAISHYLMAIN-LNEKNIRALYGLALSCHQVLTSAKCSAA  161 (201)
Q Consensus       122 ~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~a~~~  161 (201)
                      +++...+..... ..|.....+...+.++...|+.++|...
T Consensus        81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~  121 (264)
T d1zbpa1          81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL  121 (264)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            776665554333 3466677778888999999999988553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.11  E-value=2.9e-08  Score=70.82  Aligned_cols=71  Identities=8%  Similarity=0.064  Sum_probs=51.3

Q ss_pred             HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy12642          4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCDLY   78 (201)
Q Consensus         4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~   78 (201)
                      +-.+..++..+++++|+++|+++.+.  .++.+.+.+|.+|..    ..++..|..++..+..  +.++.++..+|.++
T Consensus         6 ~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l~~~~   80 (265)
T d1ouva_           6 VGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhcccccc
Confidence            34566788899999999999999765  477888899999887    5677777777777554  23444444444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=1.3e-09  Score=73.81  Aligned_cols=69  Identities=16%  Similarity=0.125  Sum_probs=63.6

Q ss_pred             HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642         27 IKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELF   95 (201)
Q Consensus        27 l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al   95 (201)
                      ....+....++..++.++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus        60 ~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          60 TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            334566678899999999999999999999999999999999999999999999999999999999983

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=4e-08  Score=61.36  Aligned_cols=78  Identities=19%  Similarity=0.122  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642         34 TAARKRKICILKAKNK---IPEAIKELTEYLKKFMTDQ-ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA  109 (201)
Q Consensus        34 ~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  109 (201)
                      +.+.+..|.++.+..+   .++++.+++.+++.+|.+. ++++.+|..|++.|+|++|..++++++.++|+|..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            5666666776665533   3567777777776666553 56677777777777777777777777777777766655444


Q ss_pred             HH
Q psy12642        110 DI  111 (201)
Q Consensus       110 ~~  111 (201)
                      .+
T Consensus       115 ~I  116 (124)
T d2pqrb1         115 MV  116 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.83  E-value=1e-07  Score=61.01  Aligned_cols=117  Identities=11%  Similarity=0.058  Sum_probs=93.1

Q ss_pred             ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHH
Q psy12642         13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGDYAKAV   88 (201)
Q Consensus        13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~   88 (201)
                      ..|+++|+.+|+++.+..  ++.+.+.++.  ....+.++|+.+++++.+  .+++.+.+.+|.+|..    ..++++|+
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHH
Confidence            358999999999998765  3445555553  345789999999999877  4689999999999886    56799999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHcCCcc
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILYTQG-GLENIELAISHYLMAINLNEK  137 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~~~~A~~~~~~al~~~p~  137 (201)
                      .+|+++...  .++.+.+.+|.++..-. -..+..+|+.+|+++.+....
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            999999864  57889999999987621 123899999999999987643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.76  E-value=1.1e-06  Score=62.30  Aligned_cols=113  Identities=14%  Similarity=0.059  Sum_probs=90.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642         33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGDYAKAVFCMEELFLHHPHNHLLHQRY  108 (201)
Q Consensus        33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l  108 (201)
                      +|.+++.+|..+...+++++|+++|+++.+  .++..+++.+|.+|..    ..++..|..+++.+..  +.++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhcc
Confidence            577899999999999999999999999976  4689999999999987    7799999999999874  4477888888


Q ss_pred             HHHHHHcC-CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642        109 ADILYTQG-GLENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus       109 a~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      |.++.... ...+.+.|...++++....+.  .+...++..+..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~  118 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYHD  118 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhh--hHHHhhcccccC
Confidence            88776521 122789999999999887554  444555555553

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=8.4e-08  Score=59.88  Aligned_cols=84  Identities=7%  Similarity=-0.059  Sum_probs=72.9

Q ss_pred             CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642         67 DQETWQELCDLYLSEG---DYAKAVFCMEELFLHHPHNH-LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL  142 (201)
Q Consensus        67 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  142 (201)
                      .....|..|.++.+..   +..+++..++.++..+|.+. ..++.+|..++..|   +|++|+++++++++++|++..+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklg---dy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG---EYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHccCCCcHHHH
Confidence            3678888888888664   45799999999999998775 79999999999999   99999999999999999999998


Q ss_pred             HHHHHHHHHhh
Q psy12642        143 YGLALSCHQVL  153 (201)
Q Consensus       143 ~~l~~~~~~~~  153 (201)
                      .....+..++.
T Consensus       111 ~L~~~Ie~~~~  121 (124)
T d2pqrb1         111 ALKSMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            87777766654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.35  E-value=6.8e-06  Score=52.11  Aligned_cols=96  Identities=11%  Similarity=-0.030  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC-CcccHHHHHH
Q psy12642         48 NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG-GLENIELAIS  126 (201)
Q Consensus        48 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~~~~A~~  126 (201)
                      .|+++|+.+|+++.+..  ++.+.+.++.  ....++++|+.+++++..  .+++.+.+.+|.++..-. ...++++|++
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHHH
Confidence            36889999999998764  5566666664  456789999999999976  468899999999987522 2348999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642        127 HYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus       127 ~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      +|+++.+.  .++.+.+.|+.+|..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHc
Confidence            99999886  567889999999986

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.45  E-value=0.27  Score=35.29  Aligned_cols=123  Identities=15%  Similarity=0.219  Sum_probs=50.6

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      .|++.|.|+.|..+|...    ++    +..+..++...++++.|.+.+.+.     +++..|..+...+....+..-+.
T Consensus        23 ~c~~~~lye~A~~lY~~~----~d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~   89 (336)
T d1b89a_          23 RCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQ   89 (336)
T ss_dssp             ------CTTTHHHHHHHT----TC----HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHhC----CC----HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHH
Confidence            355666666666666532    11    113344555666666666555432     23444544444444443333221


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ  151 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  151 (201)
                      .+ ...+   ..++.-...+...+...|   .+++.+.+++.++...+.+...+..++.+|.+
T Consensus        90 i~-~~~~---~~~~d~l~~~v~~ye~~~---~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          90 MC-GLHI---VVHADELEELINYYQDRG---YFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HT-TTTT---TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HH-HHHh---hcCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            11 0000   112222233333334444   44555555554444444444444444444443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.53  Score=34.94  Aligned_cols=84  Identities=14%  Similarity=0.034  Sum_probs=38.1

Q ss_pred             hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642         11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC   90 (201)
Q Consensus        11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   90 (201)
                      ...+..+.+...+........+........+ .....+++..+...+...-......+...+-+|..+...|+.+.|...
T Consensus       263 ~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~  341 (450)
T d1qsaa1         263 MGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI  341 (450)
T ss_dssp             CSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence            3344445555555444433333222222222 233445555555554433222222244445556666666666666666


Q ss_pred             HHHHh
Q psy12642         91 MEELF   95 (201)
Q Consensus        91 ~~~al   95 (201)
                      |..+.
T Consensus       342 ~~~~a  346 (450)
T d1qsaa1         342 LHQLM  346 (450)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.49  Score=35.11  Aligned_cols=122  Identities=13%  Similarity=0.056  Sum_probs=82.3

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICI----LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD   83 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~----~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   83 (201)
                      +.-....+.+.|...+.......+.....+......    ....+..+.+...+........ +......++......++
T Consensus       222 l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~w~~~~al~~~~  300 (450)
T d1qsaa1         222 FASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGD  300 (450)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc-chHHHHHHHHHHHHcCC
Confidence            333345688889998888777665544333333222    2234666777777777665444 43333333334567789


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642         84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN  133 (201)
Q Consensus        84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  133 (201)
                      +..+...++..-......+...+-+|..+...|   +.+.|...|..+..
T Consensus       301 ~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G---~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERG---REAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhcCcccccHHHHHHHHHHHHHHcC---ChhhHHHHHHHHhc
Confidence            999999888765444455777899999999999   99999999999875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.39  E-value=0.89  Score=32.48  Aligned_cols=139  Identities=11%  Similarity=0.045  Sum_probs=94.6

Q ss_pred             hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642          9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV   88 (201)
Q Consensus         9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~   88 (201)
                      .+...+++..|.+...+.     +++.+|..............-+... ...   .-.+++-.......|...|.+++.+
T Consensus        49 ~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li  119 (336)
T d1b89a_          49 TLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELI  119 (336)
T ss_dssp             HHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHH
Confidence            455677777777766654     4667888888877777666544221 111   1124455556677888999999999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-cCCccc-------HHHHHHHHHHHHHhhhhhhhhh
Q psy12642         89 FCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI-NLNEKN-------IRALYGLALSCHQVLTSAKCSA  160 (201)
Q Consensus        89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al-~~~p~~-------~~~~~~l~~~~~~~~~~~~a~~  160 (201)
                      .+++.++..++.+...+..++.++.+.+    .++-+++++... ..++..       ...|-.+..+|.+.|++++|..
T Consensus       120 ~~Le~~~~~~~~~~~~~~~L~~lyak~~----~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~  195 (336)
T d1b89a_         120 TMLEAALGLERAHMGMFTELAILYSKFK----PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  195 (336)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHTTC----HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCccchHHHHHHHHHHHHhC----hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Confidence            9999999988889998889998766544    566667766532 233321       1234567888899999988855

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=86.18  E-value=2.3  Score=25.79  Aligned_cols=121  Identities=12%  Similarity=0.018  Sum_probs=78.2

Q ss_pred             HhhhhccCHHHHHHHHHHHHhcCcccHH------------------HHHHHHHHH--HHcCCHHHHHHHHHHHHHhcCCC
Q psy12642          8 IGCFHFFRYEEALEHLETIIKIDETNTA------------------ARKRKICIL--KAKNKIPEAIKELTEYLKKFMTD   67 (201)
Q Consensus         8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~------------------~~~~~a~~~--~~~~~~~~A~~~~~~~~~~~p~~   67 (201)
                      ..+.-.|..++..+.+.+.....|-...                  ++-.+|..+  ...++....+.++-.   .+..+
T Consensus        10 Kk~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~---~n~~s   86 (161)
T d1wy6a1          10 KKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVI---NNTLN   86 (161)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHH---TTCCC
T ss_pred             HHHHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHH---hcchH
Confidence            3456678888888888888776543321                  111222221  123455555554432   22222


Q ss_pred             HHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642         68 QETWQELC-DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE  136 (201)
Q Consensus        68 ~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  136 (201)
                       + +..++ .+...+|+-++--+.++..++...-+|..+..+|.+|.+.|   ...++-+.+.+|.+..-
T Consensus        87 -e-~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig---~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          87 -E-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVG---DERDATTLLIEACKKGE  151 (161)
T ss_dssp             -H-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTC
T ss_pred             -H-HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---chhhHHHHHHHHHHHhH
Confidence             2 22333 45567888888888888888877788999999999999999   99999999999887653

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.04  E-value=1.4  Score=24.21  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=13.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH
Q psy12642         72 QELCDLYLSEGDYAKAVFCMEEL   94 (201)
Q Consensus        72 ~~l~~~~~~~~~~~~A~~~~~~a   94 (201)
                      -..+.-+...|.|++|+++.+++
T Consensus        12 ~RrAer~l~~~rydeAIech~kA   34 (83)
T d2crba1          12 SRRADRLLAAGKYEEAISCHRKA   34 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            34455666666666666665544